Query 021621
Match_columns 310
No_of_seqs 159 out of 811
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2957 Peptidylarginine deimi 100.0 6.7E-99 1E-103 698.6 28.5 284 2-302 5-346 (346)
2 PLN02690 Agmatine deiminase 100.0 5.2E-95 1.1E-99 703.3 32.0 296 3-302 1-373 (374)
3 PRK13551 agmatine deiminase; P 100.0 5.5E-95 1.2E-99 700.9 31.9 286 3-301 1-360 (362)
4 TIGR03380 agmatine_aguA agmati 100.0 1E-94 2.2E-99 697.9 31.6 284 5-301 1-357 (357)
5 PF04371 PAD_porph: Porphyromo 100.0 1.7E-90 3.6E-95 664.0 18.9 271 12-300 1-329 (329)
6 PF02274 Amidinotransf: Amidin 98.5 5.5E-06 1.2E-10 77.5 15.3 205 41-299 26-279 (281)
7 COG1834 N-Dimethylarginine dim 98.3 1.9E-05 4.2E-10 74.0 14.7 141 141-298 93-266 (267)
8 PRK01388 arginine deiminase; P 96.6 0.014 2.9E-07 58.3 10.3 87 196-299 314-401 (406)
9 TIGR01078 arcA arginine deimin 96.0 0.0099 2.2E-07 59.2 5.2 52 240-299 348-400 (405)
10 COG2235 ArcA Arginine deiminas 91.8 0.22 4.8E-06 49.5 4.6 90 194-299 314-404 (409)
11 PF08260 Kinin: Insect kinin p 63.8 2.8 6.1E-05 18.8 0.3 6 123-128 3-8 (8)
12 PF04343 DUF488: Protein of un 50.5 17 0.00036 29.8 3.0 28 186-215 25-52 (122)
13 COG3724 AstB Succinylarginine 46.5 88 0.0019 30.8 7.6 148 136-301 209-372 (442)
14 PF05005 Ocnus: Janus/Ocnus fa 45.9 20 0.00044 29.4 2.8 23 253-276 86-108 (108)
15 COG0603 Predicted PP-loop supe 43.5 55 0.0012 30.3 5.5 85 117-214 29-123 (222)
16 TIGR00323 eIF-6 translation in 32.5 2.2E+02 0.0047 26.1 7.6 52 145-208 117-171 (215)
17 COG1834 N-Dimethylarginine dim 31.3 81 0.0017 30.0 4.7 50 242-298 123-173 (267)
18 PRK13373 putative dioxygenase; 30.7 2.2E+02 0.0049 28.0 7.7 103 20-157 11-118 (344)
19 smart00654 eIF6 translation in 30.7 4.1E+02 0.0088 24.0 9.4 60 140-208 117-176 (200)
20 cd02520 Glucosylceramide_synth 28.2 79 0.0017 27.1 3.9 33 248-280 4-37 (196)
21 cd04823 ALAD_PBGS_aspartate_ri 26.6 71 0.0015 31.1 3.5 34 261-297 97-130 (320)
22 COG0191 Fba Fructose/tagatose 26.1 1.5E+02 0.0033 28.4 5.6 43 140-212 191-233 (286)
23 KOG3432 Vacuolar H+-ATPase V1 26.0 81 0.0018 26.2 3.2 27 184-210 30-63 (121)
24 PF04996 AstB: Succinylarginin 25.7 2.4E+02 0.0051 28.6 6.9 142 136-300 208-369 (439)
25 TIGR00550 nadA quinolinate syn 25.3 98 0.0021 29.9 4.3 69 230-298 58-131 (310)
26 TIGR03472 HpnI hopanoid biosyn 25.2 84 0.0018 30.5 3.8 32 248-279 44-76 (373)
27 PRK13364 protocatechuate 4,5-d 25.2 2.6E+02 0.0056 26.6 7.0 187 42-290 30-234 (278)
28 PF00535 Glycos_transf_2: Glyc 25.1 75 0.0016 25.2 3.0 35 248-282 1-36 (169)
29 COG1171 IlvA Threonine dehydra 24.0 78 0.0017 31.2 3.3 23 194-216 85-107 (347)
30 cd00527 IF6 Ribosome anti-asso 23.3 5.8E+02 0.013 23.4 8.8 100 71-208 78-177 (220)
31 PF02177 APP_N: Amyloid A4 N-t 23.0 92 0.002 25.4 3.0 22 259-280 36-57 (102)
32 PRK13384 delta-aminolevulinic 22.4 1E+02 0.0022 30.1 3.6 34 261-297 102-135 (322)
33 PRK10018 putative glycosyl tra 21.0 1E+02 0.0022 29.0 3.3 36 248-283 8-44 (279)
34 PRK15418 transcriptional regul 20.9 1.1E+02 0.0024 29.4 3.7 26 190-215 66-91 (318)
35 TIGR03241 arg_catab_astB succi 20.9 8.9E+02 0.019 24.6 12.0 150 135-302 207-376 (443)
36 PF05265 DUF723: Protein of un 20.8 1.2E+02 0.0026 22.4 2.9 39 261-299 6-48 (60)
37 PF04198 Sugar-bind: Putative 20.5 99 0.0022 28.7 3.2 23 194-216 6-28 (255)
38 cd00384 ALAD_PBGS Porphobilino 20.4 1.2E+02 0.0025 29.6 3.6 35 260-297 91-125 (314)
No 1
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-99 Score=698.56 Aligned_cols=284 Identities=51% Similarity=0.902 Sum_probs=267.0
Q ss_pred CCCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC-C
Q 021621 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP-E 80 (310)
Q Consensus 2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~-~ 80 (310)
.+++||+..+||||||||||+++||+|| |+.++|+.++.+||++|+++|++||+||+|+|+|+.++++.|+++|+ .
T Consensus 5 ~~~~tpr~~gf~mpaEwep~~a~~m~wP---~~~~~W~~~l~~aq~~f~~~~~aIarfe~V~l~V~~~~~~~a~a~l~~~ 81 (346)
T COG2957 5 PFKGTPRLLGFRMPAEWEPQEAIWMAWP---HRPDDWRGHLKPAQQAFAALAKAIARFERVLLCVPDDDLEDARARLDDA 81 (346)
T ss_pred CCCCCCchhcccCCcccCchhceeEecc---CCccchhhhHHHHHHHHHHHHHHHhccceEEEEechHHHHHHHhhcCCC
Confidence 3578999999999999999999999999 99999999999999999999999999999999999999989999998 7
Q ss_pred CeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcC-CCcccc
Q 021621 81 NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTER-LPRFPH 159 (310)
Q Consensus 81 ~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g-~~~~~~ 159 (310)
+|+++++++||+|+||+||+||++++|+ +++|||+||+||| .|++|+.|++|+.++++..+ .++.+.
T Consensus 82 ~V~~~~i~~nDtW~RDtGP~~~i~~~g~--------~~a~d~~FNaWGG----lkf~~e~Dd~Va~k~~~~~~k~~~~~~ 149 (346)
T COG2957 82 NVEIVRIDTNDTWLRDTGPTIVINDKGD--------LRAVDFGFNAWGG----LKFPWELDDQVASKLAELLFKAPLKTD 149 (346)
T ss_pred ceEEEEccCCCcHhhccCCcEEecCCCc--------EEEecceeccccc----cccccccchHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999998 9999999999997 36899999999999999876 667788
Q ss_pred cceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC--------------------
Q 021621 160 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-------------------- 219 (310)
Q Consensus 160 ~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g-------------------- 219 (310)
++|||||+|++||+||+|||++||||+||||+|||++||..|+++||++|||||++|+.|
T Consensus 150 ~fiLEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~kkvlWL~~Gl~~D~TDgHiDtlarFv~p~~iv 229 (346)
T COG2957 150 PFILEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAKKVLWLEYGLKNDDTDGHIDTLARFVAPGEIV 229 (346)
T ss_pred CeeeecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCccEEEEccCCCcCCcccchhhhhhhhcCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999877
Q ss_pred ----------------------------------eecCCCCccc--cCCccccccceeEEEECCeEEeccCCCchhHHHH
Q 021621 220 ----------------------------------MIHDGEAKPR--LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 263 (310)
Q Consensus 220 ----------------------------------l~~~p~~~~~--~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~A 263 (310)
|.++|-|.+. ++|+|++|||+||||+|++||||+|+|+ +|+.|
T Consensus 230 ~~~~dde~Dp~y~~~q~~~~~L~~~~d~~G~~~~l~~Lp~P~~~~~e~~~rL~aSY~NFlI~N~avIvP~y~D~-~D~~a 308 (346)
T COG2957 230 LSWCDDENDPHYAALQAMLEELKELRDAKGRPLKLHKLPIPKPVTDEDGERLPASYVNFLIINGAVIVPQYDDP-NDALA 308 (346)
T ss_pred EEecCCCCChhHHHHHHHHHHHHhccccCCCeeEEEEcCCCcccccccCCCCcccceeEEEecCeEEeeccCCc-chHHH
Confidence 2334434332 4589999999999999999999999999 99999
Q ss_pred HHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021621 264 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 302 (310)
Q Consensus 264 l~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~ 302 (310)
+++|+++||+|+||||+ |++|++|||||||||||+|+.
T Consensus 309 ~~~L~~~fP~reVVGVp-~r~il~ggGs~HCiTqQ~p~~ 346 (346)
T COG2957 309 LDVLQQAFPGREVVGVP-AREILLGGGSLHCITQQIPAG 346 (346)
T ss_pred HHHHHHhCCCCeEeccc-cHHheecCCceEEEeecccCC
Confidence 99999999999999999 999999999999999999974
No 2
>PLN02690 Agmatine deiminase
Probab=100.00 E-value=5.2e-95 Score=703.27 Aligned_cols=296 Identities=75% Similarity=1.277 Sum_probs=264.6
Q ss_pred CCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC--C
Q 021621 3 MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP--E 80 (310)
Q Consensus 3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~--~ 80 (310)
+..+|+..+||||||||||++|||+|| |+.++|+..+.++|++|++||++||+||||+|+|++++.+.+++.+. .
T Consensus 1 ~~~~p~~~~~rmPaEwep~~~~wmawP---~~~~~w~~~l~~~~~~~~~ia~aia~~e~V~~~~~~~~~~~~~~~l~~~~ 77 (374)
T PLN02690 1 GRATPKELGYRMPAEWEPHAGCWMGWP---ERPDNWRDNAKPAQQQFAAVAKAISKFEPVTVCASPAQWENAREQLPGVS 77 (374)
T ss_pred CCCCccCCCceeCCCcCccccEEEEcC---CCCccchhhhHHHHHHHHHHHHHHhcCCCEEEEECHHHHHHHHHhcccCC
Confidence 357899999999999999999999999 99999999999999999999999999999999999888888888886 5
Q ss_pred CeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccccc
Q 021621 81 NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHS 160 (310)
Q Consensus 81 ~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~ 160 (310)
+|+|+++++||+|+||+||+||+++++.....+..++++|||+||+||+|.++||++|..|++++++|++..|++.+.++
T Consensus 78 ~v~~~~~~~~D~W~RD~GP~fv~~~~~~~~~~~~~~~~~vdf~FN~WG~~~~gk~~~~~~D~~v~~~la~~~g~~~~~~~ 157 (374)
T PLN02690 78 NVRVVEMSMNDSWFRDTGPTFVVRDVPVDSSSGEREVAGIDWDFNAWGGALKGCYPDWSLDLLVARKILEAERLPRFPHS 157 (374)
T ss_pred ceEEEEcCCCCchhhccCCeEEEcCCccccccccCcEEEEeeeeecCCCcccCCcCCcchHHHHHHHHHHHcCCCeecCC
Confidence 99999999999999999999999762100000011288999999999988778888999999999999999999999999
Q ss_pred ceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC---------------------
Q 021621 161 MVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG--------------------- 219 (310)
Q Consensus 161 lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g--------------------- 219 (310)
||+||||||+||+||+||||+||||+||||++||+|||++||++||++||||||+|+.|
T Consensus 158 lvlEGGsie~DG~GtlltTe~clln~nRNP~lsk~~ie~~Lk~~LGv~kvIWL~~g~~~DddTdGHID~larFv~~~tvl 237 (374)
T PLN02690 158 MILEGGSIHVDGEGTCLTTEECLLNPNRNPHLTKEEIEEELKEYLGVEKVIWLPRGLYGDDDTNGHVDNMCCFARPGVVL 237 (374)
T ss_pred eEEcCCcEEECCCceEEEehhhhcCCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCcCCCCCCCccceeeEEecCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999987643
Q ss_pred ----------------------------------eecCCCCcc-------------------ccCCccccccceeEEEEC
Q 021621 220 ----------------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIAN 246 (310)
Q Consensus 220 ----------------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N 246 (310)
|+++|.|.+ +..|+|+++||+||||+|
T Consensus 238 ~~~~~d~~d~~y~~~~~~~~~L~~~~da~Gr~~~i~~lP~P~~~~~~~~~~~g~~~~~~~~~~~~g~~l~aSY~Nfli~N 317 (374)
T PLN02690 238 LSWTDDEDDPQYERSVEALSILSNTTDARGRKLQVIKLHVPGPLYMTFEEASGVAQDGAAKPRLAGERLAASYVNFYIAN 317 (374)
T ss_pred EEecCCCCCccHHHHHHHHHHHHhhhhccCCccEEEEecCCCccccccccccccccccccccccCCCcccccceeEEEEC
Confidence 223333321 124679999999999999
Q ss_pred CeEEeccCCCchhHHHHHHHHHHhCCCCEEEec-CchhHHhhCCCceeeecCccCCC
Q 021621 247 GGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGI-ERAREIVLGGGNIHCITQQQPAI 302 (310)
Q Consensus 247 ~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I-~~~~~l~~~GG~iHCiT~q~P~~ 302 (310)
++||||+||++++|++|+++||++||+|+||+| + |++|+.+||||||+|||+|+.
T Consensus 318 ~~VivP~fgd~~~D~~A~~~l~~~fP~r~Vv~i~~-~~~l~~~GG~iHCiTqQ~P~~ 373 (374)
T PLN02690 318 GGIVAPQFGDAKWDKEAIEVLSEAFPNHKVVGVES-AREIVLGGGNIHCITQQQPAE 373 (374)
T ss_pred CEEEEecCCCCcccHHHHHHHHHHCCCCeEEEecC-HHHHHhCCCccEEeeccCcCC
Confidence 999999999944899999999999999999999 9 999999999999999999964
No 3
>PRK13551 agmatine deiminase; Provisional
Probab=100.00 E-value=5.5e-95 Score=700.85 Aligned_cols=286 Identities=61% Similarity=1.032 Sum_probs=266.2
Q ss_pred CCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCe
Q 021621 3 MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENI 82 (310)
Q Consensus 3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~~v 82 (310)
++.+|+..+||||||||||++|||+|| |..++|+..+.++|++|++||++||++|||+|+|++++.+.++++|+.+|
T Consensus 1 ~~~~~~~~~~~~PaEwep~~~~~l~wP---~~~~~w~~~~~~~~~~~~~ia~~ia~~e~V~~~v~~~~~~~~~~~l~~~i 77 (362)
T PRK13551 1 LNSTPKQDGFRMPAEWEPHDAVWMIWP---ERPDNWRLGGKPAQAAFAKVAEAIARFEPVTMGVSAAQYANARARLPDNV 77 (362)
T ss_pred CCCCccCCCceeCCCcCccccEEEEcC---CCCcccccchhhHHHHHHHHHHHHhCCCcEEEEECHHHHHHHHHhcccCe
Confidence 467899999999999999999999999 99999999999999999999999999999999999888878888888899
Q ss_pred EEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccc-cc
Q 021621 83 RVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPH-SM 161 (310)
Q Consensus 83 ~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~-~l 161 (310)
+|+++|+||+|+||+||+||.+.+|+ +++|||+||+||+|.++||+++..|++++++|++.+|++.+++ +|
T Consensus 78 ~~~~~p~~D~W~RD~GP~fv~~~~g~--------~~~vdf~FNgWG~k~~~~~~~~~~D~~v~~~la~~~g~~~~~~~~l 149 (362)
T PRK13551 78 RVVEMSSDDAWVRDTGPTFVINDKGE--------VRGVDWGFNAWGGLVGGLYFPWDKDDQVAQKVLEIEGRDRYRAKPF 149 (362)
T ss_pred EEEECCCCCeeecccCCeEEEcCCCC--------EEEEeeeeecCCCcccCccCCCccHHHHHHHHHHHcCCCcccccCe
Confidence 99999999999999999999987777 8999999999999988888899999999999999999999887 99
Q ss_pred eecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC----------------------
Q 021621 162 VLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG---------------------- 219 (310)
Q Consensus 162 vlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g---------------------- 219 (310)
|+|||||++||+||+||||+||||+||||++||+|||++||++||++||||||+|+.|
T Consensus 150 vlEGG~ie~DG~GtlltTe~clln~nRNP~ls~~~ie~~Lk~~LGv~kvIWL~~g~~~DdTdGHiD~~arFv~~~~vl~~ 229 (362)
T PRK13551 150 VLEGGSIHVDGEGTLLTTEECLLNPNRNPHLTKEQIEQLLRDYLGVEKVIWLPDGIYNDETDGHVDNVCCFVRPGEVALA 229 (362)
T ss_pred EEcCCcEEECCCeEEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcchhheEEeeCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999988554
Q ss_pred --------------------------------eecCCCCcc-------------------ccCCccccccceeEEEECCe
Q 021621 220 --------------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGG 248 (310)
Q Consensus 220 --------------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~ 248 (310)
|+++|.|.+ +.+|+++++||+|||++|++
T Consensus 230 ~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP~P~~~~~~~~~~~~~~~~~~~~~~~~g~~l~asY~Nfli~N~~ 309 (362)
T PRK13551 230 WTDDENDPQYARSKAALEVLENTTDAKGRKLKVHKLPIPGPLYATEEESAGVDAVEGTVPREAGERLAASYVNFLIANGG 309 (362)
T ss_pred ecCCCCCccHHHHHHHHHHHHhhhhccCCccEEEEecCCCccccccccccccccccccccccCCCccccceeeEEEECCE
Confidence 222333321 12467899999999999999
Q ss_pred EEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021621 249 IITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 301 (310)
Q Consensus 249 VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 301 (310)
||||+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus 310 VivP~fg~~-~D~~A~~~l~~~fP~r~Vv~I~-~~~i~~~gG~iHCiT~q~P~ 360 (362)
T PRK13551 310 IIFPLFDDP-NDALALEILQQMFPDRKVVGVP-AREILLGGGNIHCITQQIPA 360 (362)
T ss_pred EEEecCCCc-hhHHHHHHHHHHCCCCeEEEEE-cHHHHhcCCcceEccccccC
Confidence 999999998 9999999999999999999999 99999999999999999997
No 4
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=100.00 E-value=1e-94 Score=697.90 Aligned_cols=284 Identities=63% Similarity=1.053 Sum_probs=263.5
Q ss_pred CCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEE
Q 021621 5 GTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRV 84 (310)
Q Consensus 5 ~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~~v~~ 84 (310)
.+|+..+||||||||||++|||+|| |..++|+..+.++|++|++||++||+||||+|+|++++.+.++++|..+|++
T Consensus 1 ~~~~~~~~rmPaEwep~~~~wlawP---~~~~~w~~~~~~~~~~~~~ia~aia~~e~V~~~~~~~~~~~~~~~l~~~v~~ 77 (357)
T TIGR03380 1 TTPKQDGFRMPAEFEPQAQCWMIWP---ERPDNWRNGAKPAQKAFAEVAEAIAEFEPVTMLVSPAQYENARAQLPSNIRV 77 (357)
T ss_pred CCccCCCceeCCCcCccccEEEEcC---CCCcccccchhHHHHHHHHHHHHHhCCCCEEEEECHHHHHHHHHhcccCeEE
Confidence 3678889999999999999999999 9999999999999999999999999999999999988887888888889999
Q ss_pred EEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccceec
Q 021621 85 IEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLE 164 (310)
Q Consensus 85 ~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvlE 164 (310)
+++|+||+|+||+||+||.+++|+ +++|||+||+||+|..+||+++..|++++++|++.+|++.+.++||+|
T Consensus 78 ~~~p~~D~W~RD~GP~fv~~~~g~--------~~~vdf~FNgWG~k~~~k~~~~~~D~~v~~~ia~~~g~~~~~~~lvlE 149 (357)
T TIGR03380 78 VEMSSNDAWMRDTGPTFVVNDKGE--------IRGVDWEFNAWGGLVDGLYFPWDKDDLVARKVCELEGIDRYRADFVLE 149 (357)
T ss_pred EECCCCCchhhcCCCEEEEcCCCC--------EEEEeeeeecccCcccCccCCcchHHHHHHHHHHHcCCCccccCeEEe
Confidence 999999999999999999988777 899999999999987778889999999999999999999999999999
Q ss_pred CCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-------------------------
Q 021621 165 GGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG------------------------- 219 (310)
Q Consensus 165 GG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g------------------------- 219 (310)
|||||+||+||+||||+||||+||||+|||+|||++||++||++||||||+|+.|
T Consensus 150 GG~ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~kviWL~~g~~~DdTdGHID~~arFv~~~tvl~~~~~ 229 (357)
T TIGR03380 150 GGSIHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVEKVIWLPDGLYNDETNGHVDNLCCFVRPGEVALSWTD 229 (357)
T ss_pred CCcEEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcceeeEEEeCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999988554
Q ss_pred -----------------------------eecCCCCcc-------------------ccCCccccccceeEEEECCeEEe
Q 021621 220 -----------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGGIIT 251 (310)
Q Consensus 220 -----------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~Viv 251 (310)
|+++|.|.+ +.+|+++++||+|||++|++|||
T Consensus 230 d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~Viv 309 (357)
T TIGR03380 230 DESDPQYEISKEAYDVLSNTTDAKGRKLKVHKLPIPGPLYITEEEAAGVDPVEGTLPREAGERLAASYVNFYIANGGIIL 309 (357)
T ss_pred CCCCccHHHHHHHHHHHHhhhhccCCccEEEEecCCCccccccccccccccccccccccCCCCcccceeeEEEECCEEEE
Confidence 222333321 11366899999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021621 252 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 301 (310)
Q Consensus 252 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 301 (310)
|+||++ +|++|+++||++||+|+||+|+ |++|+.+||||||+|||+|+
T Consensus 310 P~fg~~-~D~~A~~~l~~~fP~r~Vv~I~-~~~i~~~gG~iHCiT~q~P~ 357 (357)
T TIGR03380 310 PLFDDP-NDKLAQQQLQELFPDRKVVGVP-AREILLGGGNIHCITQQQPA 357 (357)
T ss_pred ecCCCc-hhHHHHHHHHHHCCCCeEEEEE-cHHHHhCCCccEEeecCCCC
Confidence 999998 9999999999999999999999 99999999999999999995
No 5
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=100.00 E-value=1.7e-90 Score=663.96 Aligned_cols=271 Identities=51% Similarity=0.924 Sum_probs=228.2
Q ss_pred ccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCC-CeEEEEeCCC
Q 021621 12 YLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPE-NIRVIEMSMN 90 (310)
Q Consensus 12 ~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~-~v~~~~~~~~ 90 (310)
||||||||||++|||+|| |..++|+..++++|++|++||++|++||||+|+|++++.+.|++.|.. +|+++.++++
T Consensus 1 fr~paEwep~~~~~~~wP---~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~l~~~~v~~~~~~~~ 77 (329)
T PF04371_consen 1 FRMPAEWEPHEATWMAWP---HREDDWPEGLDPAQQEYAAIAKAIARFEPVTMLVNPEDYAQARELLGSQNVTFVEAPTD 77 (329)
T ss_dssp EEE--TTS-EEEEEEE-----SSTTCSGGGHHHHHHHHHHHHHHHHTTSEEEEEESTTHHHHHHHHHCTTTEEEEE---S
T ss_pred CCCCCCcchhheEEEEcC---CCCcchhhHHHHHHHHHHHHHHHHhCCCCEEEEECcHHHHHHHHhCCCceEEEEEccCC
Confidence 799999999999999999 999999999999999999999999999999999999998899999986 9999999999
Q ss_pred CccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccceecCCceEE
Q 021621 91 GSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHV 170 (310)
Q Consensus 91 D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lvlEGG~ie~ 170 (310)
|+|+|||||+||.+++|+ +++|+|+||+||+| +++..|+++++++|+.+|+++++++|++|||||++
T Consensus 78 D~W~RD~GP~~v~~~~g~--------~~~vdf~fN~wG~k-----~~~~~D~~~~~~~a~~~~~~~~~~~lvlEGG~i~~ 144 (329)
T PF04371_consen 78 DIWCRDYGPIFVVDDDGQ--------LRAVDFRFNGWGGK-----YPWDLDNQVARKIAKALGLPVIKSPLVLEGGNIES 144 (329)
T ss_dssp SS-HHHHS-EEEEEETTE--------EEEEEEE--HHHHT-----S--TTGGGHHHHHHHHHTTTEEEEEEE--GGGEEE
T ss_pred CchhcccCceEEEecCCc--------EEEEeeeecCcccc-----CCcchHHHHHHHHHHHhCCCcccCCeEEecCcEEE
Confidence 999999999999998887 99999999999995 47899999999999999999999999999999999
Q ss_pred CCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-------------------------------
Q 021621 171 DGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG------------------------------- 219 (310)
Q Consensus 171 dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g------------------------------- 219 (310)
||+||+|||++||||+||||++||+|||++||++||++||||||+|+.+
T Consensus 145 dG~Gtli~Te~~ll~~nRNp~~s~~eie~~L~~~lG~~kviwL~~g~~~~d~t~GHiD~~arFv~~~~vl~~~~~d~~d~ 224 (329)
T PF04371_consen 145 DGEGTLITTESCLLNPNRNPGLSKAEIEAELKRYLGVEKVIWLPHGLLGDDDTDGHIDGIARFVDPGTVLVSRCDDPSDP 224 (329)
T ss_dssp ESSSEEEEEHHHHTSTTTSTTS-HHHHHHHHHHHHT-SEEEEESS-STTTTTTSS-GGGTEEEEETTEEEEEE-S-TTST
T ss_pred CCCceEEEEeeeEecCccCccCCHHHHHHHHHHHhCCCEEEEecCCcCCCCCcCCccceeEEecCCCEEEEEecCCCCCc
Confidence 9999999999999999999999999999999999999999999987432
Q ss_pred ------------------------eecCCCCc--cccCCccccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCCC
Q 021621 220 ------------------------MIHDGEAK--PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPK 273 (310)
Q Consensus 220 ------------------------l~~~p~~~--~~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~ 273 (310)
|+++|.+. .+.++.++++||+|||++|++||||+||++ +|++|+++||++||+
T Consensus 225 ~~~~~~~~~~~L~~~~da~G~~~~i~~lp~p~~~~~~~~~~~~~sY~Nfli~n~~VivP~fg~~-~D~~Al~~l~~~fP~ 303 (329)
T PF04371_consen 225 NYERLEENLEILSAATDADGRPFEIVELPLPDPPYDEDGERLPASYVNFLITNGAVIVPVFGDP-ADEAALEILQEAFPD 303 (329)
T ss_dssp THHHHHHHHHHHHT-B-TTSSB-EEEEEEB-SS-BETTTEEE--BTT--EEETTEEEEEE-SST-THHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhhhccCCCeeEEEEecCCCcccccCCcCccceeeeeEEECCEEEEccCCCh-HHHHHHHHHHHHCCC
Confidence 11122221 234577899999999999999999999999 999999999999999
Q ss_pred CEEEecCchhHHhhCCCceeeecCccC
Q 021621 274 YEVVGIERAREIVLGGGNIHCITQQQP 300 (310)
Q Consensus 274 r~Vv~I~~~~~l~~~GG~iHCiT~q~P 300 (310)
|+||+|+ |++|+.+||||||+|||+|
T Consensus 304 r~Vv~i~-~~~l~~~GG~iHC~T~q~P 329 (329)
T PF04371_consen 304 RKVVGID-ARELIEGGGGIHCITQQQP 329 (329)
T ss_dssp SEEEEEE-THHHHTTT--TGGGEEEEE
T ss_pred CEEEEEe-HHHHHhCCCccEEccccCc
Confidence 9999999 9999999999999999998
No 6
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=98.47 E-value=5.5e-06 Score=77.46 Aligned_cols=205 Identities=19% Similarity=0.213 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEe
Q 021621 41 DALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI 120 (310)
Q Consensus 41 ~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~v 120 (310)
..+.+++++.++++++.+. -|.|+.-+.... .--.|-+++||.+=+ .. + .++
T Consensus 26 ~~~~a~~e~~~l~~~L~~~-Gv~V~~~~~~~~-------------~~~p~~vF~rD~~~~--~~--~----------~~i 77 (281)
T PF02274_consen 26 DPEKAREEHDALVEALRSN-GVEVIELPPLLE-------------EPLPDMVFTRDPGVV--IG--G----------GVI 77 (281)
T ss_dssp -HHHHHHHHHHHHHHHHTT-T-EEEEEHHHHH-------------TT-TTTT-TTCCEEE--EC--T----------EEE
T ss_pred hHHHHHHHHHHHHHHHHhC-CcEEEEeCCccC-------------CCCCCeEEcCCcEEE--Ec--C----------CEE
Confidence 4567888888888888666 333332222211 012566999998843 22 1 344
Q ss_pred eeeeccCCCCCCCCCCCCchhHHHHHHHHHhc--------CCC-cccccceecCCceEECCCccEEEecceecCCCCCCC
Q 021621 121 DWNFNSWGGVDDGCYRDWSLDLQVARKILSTE--------RLP-RFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPH 191 (310)
Q Consensus 121 df~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~--------g~~-~~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~ 191 (310)
-.++.. +.........+.+.+.. +++ ....+-.+|||.+...|.+++++--+.
T Consensus 78 i~~m~~---------~~R~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEGGDv~~~~~~~~v~G~g~--------- 139 (281)
T PF02274_consen 78 IGRMRA---------PSRRGEEDVYKEIFEKHPFNIPRVLDIEEENGDPGYLEGGDVLVLGDNVLVIGVGS--------- 139 (281)
T ss_dssp E-B-SS---------GGGHGHHHHHHHHHHHSCCCTCCEEEEEEC--TTS-B-GGGEEEESTEEEEEEESS---------
T ss_pred EeCCCh---------HHhcCcchHHHHHHHhhccccceeeCCccccccCceecCcEEEEECCEEEEEeecC---------
Confidence 445531 22233444555555551 111 123478999999999999888844321
Q ss_pred CCHHHHHHHHHHHhCCc----eE----EEcCCCccCe------------ecCCC---Cc-----c---ccCC--------
Q 021621 192 LTKGQIENELKAYLGVM----KI----IWLPRGLFGM------------IHDGE---AK-----P---RLAG-------- 232 (310)
Q Consensus 192 lsk~eie~~Lk~~LGv~----kv----IWL~~G~~gl------------~~~p~---~~-----~---~~~g-------- 232 (310)
-|..+--+.|++.|+.. ++ +..+.+...+ +-.|. .. . ...|
T Consensus 140 RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI~v~~ 219 (281)
T PF02274_consen 140 RTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEIIEVPE 219 (281)
T ss_dssp SS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEEEESS
T ss_pred CCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEEEecc
Confidence 25677778889999887 33 3333333221 00011 00 0 0011
Q ss_pred ccccccceeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021621 233 TRLAASYVNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 233 ~~l~asY~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
+...+.=+|+|.++ +.|+++. .-....+.|++. +.+|+.|+ .+++.++|||+||+|+.+
T Consensus 220 ~e~~~~~~N~l~l~~~~vi~~~-----~~~~~~~~L~~~--G~~v~~v~-~~el~k~gGg~~C~t~~L 279 (281)
T PF02274_consen 220 EEQWNFACNVLSLGPGKVIAYA-----SNPRTNEQLEKA--GIEVIEVD-FSELEKGGGGLRCMTLPL 279 (281)
T ss_dssp CSCSGGGGS-EEECTTEEEEET-----THHHHHHHHHHT--T-EEEEE--HHHHHTTT--TTTTEEEE
T ss_pred chhhhccCCEEEecCCEEEECC-----CCHHHHHHHHhc--CCeEEEEc-HHHhhcCCCchhhhceEC
Confidence 11224559999999 6676654 223344566665 99999999 999999999999999853
No 7
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.9e-05 Score=73.98 Aligned_cols=141 Identities=22% Similarity=0.322 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhcCCCccc--ccceecC-CceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhC-CceEEE--cC
Q 021621 141 DLQVARKILSTERLPRFP--HSMVLEG-GSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLG-VMKIIW--LP 214 (310)
Q Consensus 141 D~~v~~~l~~~~g~~~~~--~~lvlEG-G~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LG-v~kvIW--L~ 214 (310)
....-....+.+|++.+. ..-+.|| |.+..+|..|+++-.+ .| |..+-.++|+++|+ -.+|+- +|
T Consensus 93 E~~~~~~~~~~lgi~i~~~~~~~~~eG~GD~l~~~~~~v~iG~s-----~R----Tn~egi~~l~~~L~~~~~v~~~~~~ 163 (267)
T COG1834 93 EEEAIKETLESLGIPIYPRVEAGVFEGAGDVLMDGGDTVYIGYS-----FR----TNLEGIEQLQAWLEEGYEVSLVRLD 163 (267)
T ss_pred CHHHHHHHHHHcCCcccccccCCCccccccEEEeCCcEEEEEec-----cc----cchHHHHHHHHHhccCcEEEEEecC
Confidence 444556667788998443 4588899 9999997668887654 22 45666677777887 444443 34
Q ss_pred CCccCe------------ecCCCCc---------cc-c-----CCccccccceeEEEECCeEEeccCCCchhHHHHHHHH
Q 021621 215 RGLFGM------------IHDGEAK---------PR-L-----AGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVL 267 (310)
Q Consensus 215 ~G~~gl------------~~~p~~~---------~~-~-----~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l 267 (310)
.+...+ ...|+.. .+ + ......+-++|++..+..+++..++.+ . .++|
T Consensus 164 ~~~lHLdt~~~~l~e~~al~y~~~~~~~~~~~lk~r~~~~I~Vpe~e~~~l~~n~v~~g~~~v~~~~~~~-~----~e~L 238 (267)
T COG1834 164 ERYLHLDTVFNPLAEGLALAYPPAFSEGANDVLKERGFELIEVPEEEAFALGCNVVSLGPNVVIALPRTP-K----AEQL 238 (267)
T ss_pred CceeehhheeeeccCcceeecchhcchhHHHHHhhCCceEEecCHhHhhhhccceeecCCceeecCcccc-h----HHHH
Confidence 332221 0011100 00 0 111234689999999999999998877 4 5778
Q ss_pred HHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021621 268 SQAFPKYEVVGIERAREIVLGGGNIHCITQQ 298 (310)
Q Consensus 268 ~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 298 (310)
+++ +.+|+.++ .++|.+.|||+||+|+-
T Consensus 239 ~~~--GfeVi~~~-~~ei~k~gGg~~C~tl~ 266 (267)
T COG1834 239 AAA--GFEVIEVD-LTEILKGGGGLRCMTLP 266 (267)
T ss_pred HhC--CceEEecC-HHHHHHcCCCceeeccc
Confidence 877 89999999 99999999999999974
No 8
>PRK01388 arginine deiminase; Provisional
Probab=96.64 E-value=0.014 Score=58.30 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCceEEEcCCCccCeecCCCCccccCCcc-ccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCCCC
Q 021621 196 QIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTR-LAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKY 274 (310)
Q Consensus 196 eie~~Lk~~LGv~kvIWL~~G~~gl~~~p~~~~~~~g~~-l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~r 274 (310)
.+++.|+++||++++-.++-| |-. ....+ ....=.|+|.....+||-- . ....-.+.|+++ +.
T Consensus 314 ~l~~~L~~~lg~~~~~lI~~g--gd~--------~~~~~Eq~~~g~N~l~i~pg~Vv~~-~---~n~~t~~~L~~~--G~ 377 (406)
T PRK01388 314 PFLEVLAEALGLDKLRVIETG--GDD--------IAAEREQWNDGNNTLAIAPGVVVAY-D---RNTVTNALLRKA--GI 377 (406)
T ss_pred CHHHHHHHHhCCCCceEEecC--CCc--------ccchHHHHhcCCCEEEecCCEEEEe-C---CcHHHHHHHHHC--CC
Confidence 488999999999876666644 100 00111 1122378888865554432 1 222345778887 99
Q ss_pred EEEecCchhHHhhCCCceeeecCcc
Q 021621 275 EVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 275 ~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
+|+.|+ .++|..+|||+||+|+..
T Consensus 378 ~v~~i~-~~el~~~~Gg~~C~t~pl 401 (406)
T PRK01388 378 EVITIP-GSELGRGRGGPRCMSCPI 401 (406)
T ss_pred EEEEeC-hHHhhcCCCCCeecccee
Confidence 999999 999999999999999864
No 9
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=95.99 E-value=0.0099 Score=59.23 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=40.6
Q ss_pred eeEEE-ECCeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021621 240 VNFYI-ANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 240 ~Nfli-~N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
.|+|. .+|.||++-= -..-.+.|+++ +.+|+.|+ .++|.++|||.||+|+..
T Consensus 348 ~NvLai~pg~Vi~y~r-----n~~tn~~L~~~--Gi~V~~i~-~sEl~rg~GG~rCmT~PL 400 (405)
T TIGR01078 348 NNVLAIAPGVVVGYSR-----NVYTNALLEKA--GIKVLTIP-GSELSRGRGGPRCMSMPL 400 (405)
T ss_pred CcEEEeCCCEEEEecC-----CHHHHHHHHHC--CCEEEEeC-hHHHhcCCCCCeecceEE
Confidence 78888 4455555432 23455788887 99999999 999999999999999854
No 10
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]
Probab=91.80 E-value=0.22 Score=49.54 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCCceEEEcCCCccCeecCCCCccccCCcc-ccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCC
Q 021621 194 KGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTR-LAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFP 272 (310)
Q Consensus 194 k~eie~~Lk~~LGv~kvIWL~~G~~gl~~~p~~~~~~~g~~-l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP 272 (310)
+...-+.+.+.||++++=.++-|--..+ ...| ....=.|+|-+...+||+- +.. -..-+.++++
T Consensus 314 ~~~~~~~~~~~lgi~~~~~I~~gg~d~i---------~~~reqw~dg~N~L~i~PG~Vv~y-drN---~~tN~~l~e~-- 378 (409)
T COG2235 314 LGDLLEYLAEALGIDKVRLIETGGGDVI---------AAEREQWDDGTNTLTIAPGVVVAY-DRN---IYTNNLLREA-- 378 (409)
T ss_pred chhHHHHHHHHhCCCcceEEEeCCCccc---------hhhHHHhhcCCceEEecCCEEEee-cCC---ccchhhHHHc--
Confidence 4456677777788777655553311111 1112 2235578999998888874 322 1222567776
Q ss_pred CCEEEecCchhHHhhCCCceeeecCcc
Q 021621 273 KYEVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 273 ~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
+.+|+.|+ .++|-.|-||.||+|+..
T Consensus 379 Gi~Vi~I~-~sEL~rGrGG~~CMt~pl 404 (409)
T COG2235 379 GIKVITIP-GSELGRGRGGPRCMTCPL 404 (409)
T ss_pred CcEEEEEe-cccccCCCCCCceeeeee
Confidence 99999999 999999999999999864
No 11
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=63.80 E-value=2.8 Score=18.78 Aligned_cols=6 Identities=83% Similarity=1.857 Sum_probs=4.7
Q ss_pred eeccCC
Q 021621 123 NFNSWG 128 (310)
Q Consensus 123 ~FN~WG 128 (310)
.||.||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 588887
No 12
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=50.50 E-value=17 Score=29.75 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=24.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCceEEEcCC
Q 021621 186 KNRNPHLTKGQIENELKAYLGVMKIIWLPR 215 (310)
Q Consensus 186 ~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~ 215 (310)
..|||+++|+.++..|++ .|+. .+|+|.
T Consensus 25 ~S~~~~~~k~~l~~~l~~-~gi~-Y~~~~~ 52 (122)
T PF04343_consen 25 RSRKPGFNKEDLASFLEE-AGIE-YVWLPE 52 (122)
T ss_pred CCCCCCCCHHHHHHHHHH-CCce-Eeechh
Confidence 457999999999999998 7986 999985
No 13
>COG3724 AstB Succinylarginine dihydrolase [Amino acid transport and metabolism]
Probab=46.51 E-value=88 Score=30.84 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=95.0
Q ss_pred CCCchhHHHHHHHHHhcCCCc------ccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCce
Q 021621 136 RDWSLDLQVARKILSTERLPR------FPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMK 209 (310)
Q Consensus 136 ~~~~~D~~v~~~l~~~~g~~~------~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~k 209 (310)
+|..+-.+..+.+++..|+.- ...+-++++|.++-|= ..+.+++||+. ..---.+++++-++|+..++--.
T Consensus 209 yPaRQt~eAsqAvaRl~g~~~~~~vfaqQnp~vIdqGvFHNDV--iaV~nr~vLf~-He~AF~~~~~ll~elrar~~g~~ 285 (442)
T COG3724 209 YPARQTREASEAVARLHGVNPQQVVFAQQNPAVIDQGVFHNDV--IAVSNRQVLFC-HEQAFARQSQLLAELRARVNGFM 285 (442)
T ss_pred CchHHHHHHHHHHHHHhCCCccceeeeccCHHHhhccccccce--EEecccceEEe-cHHhhccHHHHHHHHHhhcCCce
Confidence 355666677777888777741 2457899999998775 57788888874 23345788999999998887644
Q ss_pred EEEcCCCccCeecCCCCccccCCccccccce-eE--EEE-CC--eEEeccCCCchhHHHHHHHHHHhC----CCCEEEec
Q 021621 210 IIWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NF--YIA-NG--GIITPQFGDKKWDGEAVRVLSQAF----PKYEVVGI 279 (310)
Q Consensus 210 vIWL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nf--li~-N~--~VivP~fg~~~~D~~Al~~l~~~f----P~r~Vv~I 279 (310)
.|-+|..-. .-....+||+ |. |-. +| .+++|+=-. ....+-..++++. |=.+|.-+
T Consensus 286 ~ieVp~~~v------------sv~DaVasYLFNSQLls~~dg~m~Lv~P~E~r--dn~~vw~yl~~l~a~d~PI~~vkvf 351 (442)
T COG3724 286 AIEVPAAQV------------SVSDAVASYLFNSQLLSRADGSMLLVLPQECR--DNAGVWRYLNELLAADNPISEVKVF 351 (442)
T ss_pred EEEeccccc------------cHHHHHHHHhhhhhheecCCCeEEEEechHhc--cChHHHHHHHHHHccCCCcceeEEE
Confidence 555553210 0012223332 11 111 11 256787321 2345666666664 77888899
Q ss_pred CchhHHhhCCCceeeecCccCC
Q 021621 280 ERAREIVLGGGNIHCITQQQPA 301 (310)
Q Consensus 280 ~~~~~l~~~GG~iHCiT~q~P~ 301 (310)
+ -+.-...|||--|+-.-++-
T Consensus 352 D-lrqSM~NGGGPACLRLRVvl 372 (442)
T COG3724 352 D-LRQSMANGGGPACLRLRVVL 372 (442)
T ss_pred e-HHHHhhcCCCceeEEEeeec
Confidence 9 99999999999999876653
No 14
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=45.94 E-value=20 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=17.1
Q ss_pred cCCCchhHHHHHHHHHHhCCCCEE
Q 021621 253 QFGDKKWDGEAVRVLSQAFPKYEV 276 (310)
Q Consensus 253 ~fg~~~~D~~Al~~l~~~fP~r~V 276 (310)
.||.+ .=+.+.++|++.||+++|
T Consensus 86 ~fG~A-dH~~t~~il~~~yp~y~i 108 (108)
T PF05005_consen 86 GFGRA-DHSITAEILKKKYPDYEI 108 (108)
T ss_dssp TTBB---HHHHHHHHHHHSTTSEE
T ss_pred ccCCC-CHHHHHHHHHHHCcCCCC
Confidence 56766 566788999999999886
No 15
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=43.54 E-value=55 Score=30.26 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=53.7
Q ss_pred eeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccccc--cee-cCCceEECCCccEEEec-------ceecCC
Q 021621 117 VAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHS--MVL-EGGSIHVDGEGTCLTTE-------ECLLNK 186 (310)
Q Consensus 117 ~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~--lvl-EGG~ie~dG~GtlltTe-------~~lln~ 186 (310)
+.++.|+|. +.+...-+.++++|+.+|++..-.+ +.. =||+=.+|+..-+...+ ..++ |
T Consensus 29 v~alsfdYG----------Qrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLtd~~~~vp~~~~~~~~~p~t~V-P 97 (222)
T COG0603 29 VHALTFDYG----------QRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALTDDSIDVPKYEFAEEEIPATFV-P 97 (222)
T ss_pred EEEEEeeCC----------CCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCcCCCccccccccccccCcceEe-c
Confidence 567888875 2336777899999999999865333 333 33555555543332222 2233 7
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEEcC
Q 021621 187 NRNPHLTKGQIENELKAYLGVMKIIWLP 214 (310)
Q Consensus 187 nRNp~lsk~eie~~Lk~~LGv~kvIWL~ 214 (310)
+||-- =--+-..+.+.+|++.|++-=
T Consensus 98 ~RN~i--flsiA~~~Ae~~g~~~I~~Gv 123 (222)
T COG0603 98 ARNLI--FLSIAAAYAEALGADAIIIGV 123 (222)
T ss_pred cccHH--HHHHHHHHHHHcCCCeEEEEe
Confidence 88832 124677888899999998843
No 16
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=32.45 E-value=2.2e+02 Score=26.09 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCccc---ccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021621 145 ARKILSTERLPRFP---HSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 208 (310)
Q Consensus 145 ~~~l~~~~g~~~~~---~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~ 208 (310)
-+.+.+.++.+... ..+..=|+++..+-+| ||+ +|.+|++++ +.|++.||++
T Consensus 117 ~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G-------~lv----hP~~s~ee~-~~i~d~LgV~ 171 (215)
T TIGR00323 117 EELISDVLGVEVFRGTIAGLITVGSYAVVTNRG-------GLV----HPQTSVQEQ-EELSSLLGVE 171 (215)
T ss_pred HHHHHHhcCCcEEEEecccccccceEEEEeCcE-------EEE----CCCCCHHHH-HHHHHHhCCc
Confidence 34566667777654 3456666666655555 444 678887665 5789999997
No 17
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=31.27 E-value=81 Score=29.99 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=37.8
Q ss_pred EEEECCeEEeccCCCchhHHHHHHHHHHhCC-CCEEEecCchhHHhhCCCceeeecCc
Q 021621 242 FYIANGGIITPQFGDKKWDGEAVRVLSQAFP-KYEVVGIERAREIVLGGGNIHCITQQ 298 (310)
Q Consensus 242 fli~N~~VivP~fg~~~~D~~Al~~l~~~fP-~r~Vv~I~~~~~l~~~GG~iHCiT~q 298 (310)
++++.+..++=.++.. +|.++.++|++++| +++|+.+. ...+-+|=-|.-
T Consensus 123 ~l~~~~~~v~iG~s~R-Tn~egi~~l~~~L~~~~~v~~~~------~~~~~lHLdt~~ 173 (267)
T COG1834 123 VLMDGGDTVYIGYSFR-TNLEGIEQLQAWLEEGYEVSLVR------LDERYLHLDTVF 173 (267)
T ss_pred EEEeCCcEEEEEeccc-cchHHHHHHHHHhccCcEEEEEe------cCCceeehhhee
Confidence 4566566677778888 99999999999999 99999988 344456644443
No 18
>PRK13373 putative dioxygenase; Provisional
Probab=30.74 E-value=2.2e+02 Score=28.04 Aligned_cols=103 Identities=14% Similarity=0.226 Sum_probs=57.9
Q ss_pred cceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCcc-EEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccC
Q 021621 20 PHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP-VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTG 98 (310)
Q Consensus 20 ~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~-V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~g 98 (310)
+|+=.++.|| ... =++...++.+.+.++.+.|.++.| |.|++.++... ....|.+
T Consensus 11 SHsPl~~g~~---d~p--~~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~-------------------~Ff~d~m 66 (344)
T PRK13373 11 SHAPGALGWP---DAP--SASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFE-------------------NHFRSLM 66 (344)
T ss_pred CCCCcccCCC---CCC--CHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhh-------------------hhccccC
Confidence 4554455777 321 123456778888888888888877 44444443322 3446778
Q ss_pred ceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCC-CCCCCCchhHHHHHHHHHh---cCCCcc
Q 021621 99 PTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDD-GCYRDWSLDLQVARKILST---ERLPRF 157 (310)
Q Consensus 99 Pi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~-~~~~~~~~D~~v~~~l~~~---~g~~~~ 157 (310)
|.|.+.-... -.=.|.+||...+ ....++..+..++..|++. .|+++.
T Consensus 67 P~F~IG~a~~-----------~~g~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfDva 118 (344)
T PRK13373 67 PTVGIGVADS-----------HPGPATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYDVA 118 (344)
T ss_pred CceEEEeccc-----------ccCCccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 8888742211 0012557773210 0113456678889888876 366554
No 19
>smart00654 eIF6 translation initiation factor 6.
Probab=30.70 E-value=4.1e+02 Score=24.01 Aligned_cols=60 Identities=23% Similarity=0.358 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCCcccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021621 140 LDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 208 (310)
Q Consensus 140 ~D~~v~~~l~~~~g~~~~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~ 208 (310)
.+++.-+.+.+.++++.....+ +|.- .=|.|.+.+..-||+ +|.-|..|++ +|++.||++
T Consensus 117 ~s~ee~~~i~d~L~V~v~~gTi---~G~~-~VGs~~VannkG~lv----~~~tt~~El~-~ie~~l~v~ 176 (200)
T smart00654 117 LSKETEEIISDVLGVEVFRGTI---AGNI-TVGSYCVVTNKGGLV----HPDTSEEELK-ELSELLGVP 176 (200)
T ss_pred CCHHHHHHHHHHhCCeEEEEEe---cCcc-cceEEEEEECCEEEE----CCCCCHHHHH-HHHHHhCCC
Confidence 4445556777788998876544 4544 335567777777887 5566777764 678889876
No 20
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=28.21 E-value=79 Score=27.07 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEeccCCCchhHHHHHHHHH-HhCCCCEEEecC
Q 021621 248 GIITPQFGDKKWDGEAVRVLS-QAFPKYEVVGIE 280 (310)
Q Consensus 248 ~VivP~fg~~~~D~~Al~~l~-~~fP~r~Vv~I~ 280 (310)
.||+|+|+..+.=.++++-+. +.+|+.+||-|+
T Consensus 4 sviip~~n~~~~l~~~L~sl~~q~~~~~eiivVd 37 (196)
T cd02520 4 SILKPLCGVDPNLYENLESFFQQDYPKYEILFCV 37 (196)
T ss_pred EEEEecCCCCccHHHHHHHHHhccCCCeEEEEEe
Confidence 478888876533334554443 347888887765
No 21
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.63 E-value=71 Score=31.10 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecC
Q 021621 261 GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ 297 (310)
Q Consensus 261 ~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~ 297 (310)
.+|++.+++.||+--|+. |+|.-=...+| ||=-.
T Consensus 97 ~~air~iK~~~p~l~vi~-DVclc~YT~hG--HcGil 130 (320)
T cd04823 97 CRAIRAIKEAFPELGIIT-DVALDPYTSHG--HDGIV 130 (320)
T ss_pred HHHHHHHHHhCCCcEEEE-eeeccCCCCCC--cceec
Confidence 689999999999987665 43666666777 88543
No 22
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=26.11 E-value=1.5e+02 Score=28.42 Aligned_cols=43 Identities=35% Similarity=0.567 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhcCCCcccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEE
Q 021621 140 LDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIW 212 (310)
Q Consensus 140 ~D~~v~~~l~~~~g~~~~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIW 212 (310)
.|-.+-+++.+..++ +|||-||| +.+.+||.+-++ ||+.||=.
T Consensus 191 L~~~~L~~i~~~~~~-----PlVlHGgS-----------------------Gip~~eI~~aI~--~GV~KvNi 233 (286)
T COG0191 191 LDFDRLKEIQEAVSL-----PLVLHGGS-----------------------GIPDEEIREAIK--LGVAKVNI 233 (286)
T ss_pred CCHHHHHHHHHHhCC-----CEEEeCCC-----------------------CCCHHHHHHHHH--hCceEEee
Confidence 565666666666554 49999999 778999999997 89999865
No 23
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=25.97 E-value=81 Score=26.16 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=21.0
Q ss_pred cCCCCCCCC-------CHHHHHHHHHHHhCCceE
Q 021621 184 LNKNRNPHL-------TKGQIENELKAYLGVMKI 210 (310)
Q Consensus 184 ln~nRNp~l-------sk~eie~~Lk~~LGv~kv 210 (310)
+|.||+|++ |.+|||..+++++--+.|
T Consensus 30 v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDI 63 (121)
T KOG3432|consen 30 VNENREPNFLVVDSKTTVEEIEDAFKSFTARDDI 63 (121)
T ss_pred cccCCCCCEEEEeccCCHHHHHHHHHhhccccCe
Confidence 456677764 899999999999875554
No 24
>PF04996 AstB: Succinylarginine dihydrolase; InterPro: IPR007079 Succinylarginine dihydrolase (AstB) transforms N(2)-succinylglutamate into succinate and glutamate. This enzyme is the second in the five-step ammonia-producing arginine succinyltransferase pathway, the major pathway in Escherichia coli and in other related bacteria for arginine catabolism as a sole nitrogen source. AstB assumes a five-stranded alpha/beta propeller structure, placing it in the amidinotransferase (AT) superfamily of proteins, which are characterised by their Cys-His-Glu active site triad [].; GO: 0009015 N-succinylarginine dihydrolase activity, 0006525 arginine metabolic process; PDB: 1YNH_B 1YNF_B 1YNI_C.
Probab=25.71 E-value=2.4e+02 Score=28.60 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCCchhHHHHHHHHHhcCCCc-----ccccceecCCceEECC-----CccEEEecceecCCCCCCCCCHHHHHHHHHHHh
Q 021621 136 RDWSLDLQVARKILSTERLPR-----FPHSMVLEGGSIHVDG-----EGTCLTTEECLLNKNRNPHLTKGQIENELKAYL 205 (310)
Q Consensus 136 ~~~~~D~~v~~~l~~~~g~~~-----~~~~lvlEGG~ie~dG-----~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~L 205 (310)
+|..+-.+..+.||+..+++- ...+-+++.|.++-|= +.+|+.-|+.+ +.++++.++|++.+
T Consensus 208 fPARQt~eAS~AVARlH~L~~~~vf~qQnp~aId~GvFHNDVIaV~N~~vLf~He~AF--------~d~~~~l~~lr~k~ 279 (439)
T PF04996_consen 208 FPARQTLEASQAVARLHGLPERTVFAQQNPAAIDAGVFHNDVIAVGNENVLFYHEQAF--------LDQAAVLAELRAKF 279 (439)
T ss_dssp S--S-BHHHHHHHHHHTTBGGGEEEEEB-HHHHTTT--SGGGTEEEETTEEEEETTSB--------TTHHHHHHHHHHHS
T ss_pred CCchhHHHHHHHHHHHhCCCcceEEeccCHHHHhcCCcccceEEeeccceeeehHhhh--------CCHHHHHHHHHHHc
Confidence 466777788899999888732 2357889999987653 12444455544 46899999999999
Q ss_pred CCceEEEcCCCccCeecCCCCccccCCccccccce-eEEEE-----CCeEEeccCCCchhHHHHHHHHHHh----CCCCE
Q 021621 206 GVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NFYIA-----NGGIITPQFGDKKWDGEAVRVLSQA----FPKYE 275 (310)
Q Consensus 206 Gv~kvIWL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nfli~-----N~~VivP~fg~~~~D~~Al~~l~~~----fP~r~ 275 (310)
+-=.+|=+|..-..|. ..-.||+ |.=++ .-.+|+|.=- . +...+...++++ -|=++
T Consensus 280 ~~~~~ieVp~~~vsl~------------dAV~sYLFNSQLlt~pdg~M~Lv~P~Ec-~-~~~~v~~yl~~l~~~~~PI~~ 345 (439)
T PF04996_consen 280 PGLHFIEVPEAEVSLE------------DAVKSYLFNSQLLTLPDGSMALVVPEEC-R-ENPAVWAYLEELVASNGPIDE 345 (439)
T ss_dssp TT-EEEEE-TTTS-HH------------HHHHHTTTSSEEEE-TTS-EEEEEEHHH-H-SSHHHHHHHHHHHHSSSSEEE
T ss_pred CCCEEEEeccccCcHH------------HHHHHccccceeeecCCCcEEEEechHH-h-cCHHHHHHHHHHHhcCCCcce
Confidence 8755666664311100 0011111 10000 1237788732 1 355556666655 47789
Q ss_pred EEecCchhHHhhCCCceeeecCccC
Q 021621 276 VVGIERAREIVLGGGNIHCITQQQP 300 (310)
Q Consensus 276 Vv~I~~~~~l~~~GG~iHCiT~q~P 300 (310)
|..+| -+.--..|||--|+-.-++
T Consensus 346 v~~~D-lrqSM~NGGGPACLRLRVv 369 (439)
T PF04996_consen 346 VHVFD-LRQSMRNGGGPACLRLRVV 369 (439)
T ss_dssp EEEE---HHHHTTT--TTTTEEEEE
T ss_pred eEEec-hhhhhhcCCCcchheeeee
Confidence 99999 9999999999999865444
No 25
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=25.34 E-value=98 Score=29.92 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=51.5
Q ss_pred cCCccccccceeEEEECCeEEeccCC--Cc---hhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021621 230 LAGTRLAASYVNFYIANGGIITPQFG--DK---KWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 298 (310)
Q Consensus 230 ~~g~~l~asY~Nfli~N~~VivP~fg--~~---~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 298 (310)
+-|.+.-|.|+.-|-.++.|++|--+ .+ .-+.+.+..+++.+|+..|+..++|+.=+..--.+=|.|-+
T Consensus 58 F~gv~fMae~a~~l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~aeVka~aD~v~TSsn 131 (310)
T TIGR00550 58 FCGVHFMGETAKILNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTAEVKALADIVCTSSN 131 (310)
T ss_pred EeCCchHHHHHHHhCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCHHHHHhCCEEEchHH
Confidence 45677789999988999999997653 11 14567799999999999988776677666555556676644
No 26
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=25.21 E-value=84 Score=30.47 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=16.6
Q ss_pred eEEeccCCCchhHHHHHHHH-HHhCCCCEEEec
Q 021621 248 GIITPQFGDKKWDGEAVRVL-SQAFPKYEVVGI 279 (310)
Q Consensus 248 ~VivP~fg~~~~D~~Al~~l-~~~fP~r~Vv~I 279 (310)
.||+|.|+.++.=.++++-+ ++-||+.+||-+
T Consensus 44 SViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivv 76 (373)
T TIGR03472 44 SVLKPLHGDEPELYENLASFCRQDYPGFQMLFG 76 (373)
T ss_pred EEEEECCCCChhHHHHHHHHHhcCCCCeEEEEE
Confidence 36667776552333444333 444666666554
No 27
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=25.19 E-value=2.6e+02 Score=26.56 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHcCccE-EEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEe
Q 021621 42 ALHAQRVFAKVATAISKFEPV-TVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI 120 (310)
Q Consensus 42 l~~~~~~~~~la~aia~~e~V-~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~v 120 (310)
..++.+.|.++.+.|+++.|= .|++.+.... ...+|.+|-|.+....+ .
T Consensus 30 ~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~~-------------------~ff~d~~p~f~i~~~~~--------~--- 79 (278)
T PRK13364 30 WKPFFDGFPPVREWLEKVKPDVAVVFYNDHGL-------------------NFFLDKMPTFAVGAAPE--------Y--- 79 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEECCchHh-------------------hhccccCCeEEEeeCce--------e---
Confidence 356788899999999888774 3344433321 34567788888754322 1
Q ss_pred eeeeccCCCCCCCCCCCCchhHHHHHHHHHh---cCCCcccc-cceecCCceE----ECCCc-cEEEecceecCCCCCCC
Q 021621 121 DWNFNSWGGVDDGCYRDWSLDLQVARKILST---ERLPRFPH-SMVLEGGSIH----VDGEG-TCLTTEECLLNKNRNPH 191 (310)
Q Consensus 121 df~FN~WG~k~~~~~~~~~~D~~v~~~l~~~---~g~~~~~~-~lvlEGG~ie----~dG~G-tlltTe~~lln~nRNp~ 191 (310)
.-.+.+||.... .++..|..++++|++. .|++...+ .+.++=|... ..+++ .-+-.=.+.+|....|.
T Consensus 80 ~g~~~~~g~~~~---~~~~~~~~lA~~i~~~l~~~gid~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~ 156 (278)
T PRK13364 80 SNADEGWGIPTL---APFKGDTELSWHIIESLVEEEFDITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPL 156 (278)
T ss_pred cCChhhcCCCCC---CCCCCCHHHHHHHHHHHHHcCCCeecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCC
Confidence 223345664311 3556788888888765 46655332 3444444321 11111 10001134456666677
Q ss_pred CCHHH---HHHHHHHHhC----CceEEEcCCC-ccCeecCCCCccccCCccccccceeEEEECCeEEeccCCCchhHHHH
Q 021621 192 LTKGQ---IENELKAYLG----VMKIIWLPRG-LFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 263 (310)
Q Consensus 192 lsk~e---ie~~Lk~~LG----v~kvIWL~~G-~~gl~~~p~~~~~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~A 263 (310)
.|-++ +-+.|++... -++|..+-.| +.. . .. .-|..|+| ++-|++-
T Consensus 157 ~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH--~-------l~--~~p~G~~~---------------~~fD~~~ 210 (278)
T PRK13364 157 PSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSH--Q-------LD--GERAGFIN---------------KDFDLQC 210 (278)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCcccc--C-------CC--CCCcccCC---------------HHHHHHH
Confidence 77654 5555666532 2567776544 221 0 00 12345522 4478888
Q ss_pred HHHHHHhCCCCEEEecCchhHHhhCCC
Q 021621 264 VRVLSQAFPKYEVVGIERAREIVLGGG 290 (310)
Q Consensus 264 l~~l~~~fP~r~Vv~I~~~~~l~~~GG 290 (310)
++.|++ =+ ..+..++ -.+++..+|
T Consensus 211 l~~l~~-d~-~~l~~~~-~~e~~~~AG 234 (278)
T PRK13364 211 MDSLVS-DP-EWLTQYS-NHELVELAG 234 (278)
T ss_pred HHHHHh-CH-HHHHcCC-HHHHHHHcc
Confidence 998886 22 3366666 667777766
No 28
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=25.11 E-value=75 Score=25.18 Aligned_cols=35 Identities=11% Similarity=0.463 Sum_probs=25.7
Q ss_pred eEEeccCCCchhHHHHHHHHHHh-CCCCEEEecCch
Q 021621 248 GIITPQFGDKKWDGEAVRVLSQA-FPKYEVVGIERA 282 (310)
Q Consensus 248 ~VivP~fg~~~~D~~Al~~l~~~-fP~r~Vv~I~~~ 282 (310)
.|++|+|+.++.=.++++.+++. .+..+|+-|++.
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~ 36 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDG 36 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccc
Confidence 38999999864556788877776 778888888733
No 29
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=23.96 E-value=78 Score=31.20 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCceEEEcCCC
Q 021621 194 KGQIENELKAYLGVMKIIWLPRG 216 (310)
Q Consensus 194 k~eie~~Lk~~LGv~kvIWL~~G 216 (310)
-+|=-+.=.+.||++-+|.+|.+
T Consensus 85 HaQGvA~aa~~lGi~a~IvMP~~ 107 (347)
T COG1171 85 HAQGVAYAAKRLGIKATIVMPET 107 (347)
T ss_pred HHHHHHHHHHHhCCCEEEEecCC
Confidence 46667777888999999999975
No 30
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=23.31 E-value=5.8e+02 Score=23.37 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=54.5
Q ss_pred HHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHH
Q 021621 71 WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILS 150 (310)
Q Consensus 71 ~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~ 150 (310)
.+..++.|+.+|.++....+.. =.|-+.+.|+.|- .| ++...|.++ +.+.+
T Consensus 78 ~~~l~~~L~~~V~v~~~~~~~s---~iGnli~~Nd~g~----------lv---------------~~~~~~~e~-~~i~~ 128 (220)
T cd00527 78 LQHIRNSLPDEVGVLRVKENLS---ALGNVILCNDHGA----------LV---------------HPDLSKEAE-EIIED 128 (220)
T ss_pred HHHHHHhcCCCeEEEEccccce---eeeeEEEEcCceE----------Ee---------------CCCCCHHHH-HHHHH
Confidence 4455666666787776544332 2355555554432 21 232334333 35656
Q ss_pred hcCCCcccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc
Q 021621 151 TERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM 208 (310)
Q Consensus 151 ~~g~~~~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~ 208 (310)
.++.+....++ || +..=|.-.+.+..-||+ +|.+|++++ +.+++.||++
T Consensus 129 ~L~v~V~~~~i---~~-~~avGn~iv~Nd~g~Lv----hP~~s~ee~-~~i~d~L~V~ 177 (220)
T cd00527 129 VLGVEVFRGTI---AG-IKTVGSAGVLTNKGGLV----HPKTSDEEL-EELSELFKVP 177 (220)
T ss_pred hcCCcEEEEEc---cC-cccceeEEEEeccEEEE----CCCCCHHHH-HHHHHHhCCc
Confidence 67776654221 22 44445433333444665 678886654 5789999997
No 31
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=22.99 E-value=92 Score=25.39 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhCCCCEEEecC
Q 021621 259 WDGEAVRVLSQAFPKYEVVGIE 280 (310)
Q Consensus 259 ~D~~Al~~l~~~fP~r~Vv~I~ 280 (310)
..++.|+.-|+.||++.|..|-
T Consensus 36 ~k~eIL~YCrkvYP~l~ItnVv 57 (102)
T PF02177_consen 36 DKEEILKYCRKVYPELQITNVV 57 (102)
T ss_dssp SHHHHHHHHHHHSTTS-EEEEE
T ss_pred ChHHHHHHHHHhCCCCceeEEE
Confidence 4568999999999999998873
No 32
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.40 E-value=1e+02 Score=30.13 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecC
Q 021621 261 GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ 297 (310)
Q Consensus 261 ~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~ 297 (310)
.+|++.+++.||+--|+. |+|.-=...+| ||=-.
T Consensus 102 ~~air~iK~~~pdl~vi~-DVcLc~YT~hG--HcGil 135 (322)
T PRK13384 102 ARMVRTIKAAVPEMMVIP-DICFCEYTDHG--HCGVL 135 (322)
T ss_pred HHHHHHHHHHCCCeEEEe-eeecccCCCCC--ceeec
Confidence 689999999999987665 44766667788 88543
No 33
>PRK10018 putative glycosyl transferase; Provisional
Probab=20.95 E-value=1e+02 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=25.9
Q ss_pred eEEeccCCCchhHHHHHH-HHHHhCCCCEEEecCchh
Q 021621 248 GIITPQFGDKKWDGEAVR-VLSQAFPKYEVVGIERAR 283 (310)
Q Consensus 248 ~VivP~fg~~~~D~~Al~-~l~~~fP~r~Vv~I~~~~ 283 (310)
.||+|+|+.++.=.++++ ++++-||+.+||-|+.++
T Consensus 8 SVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS 44 (279)
T PRK10018 8 SIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS 44 (279)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 589999998733345554 556668999999998443
No 34
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=20.93 E-value=1.1e+02 Score=29.42 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEcCC
Q 021621 190 PHLTKGQIENELKAYLGVMKIIWLPR 215 (310)
Q Consensus 190 p~lsk~eie~~Lk~~LGv~kvIWL~~ 215 (310)
|.....++|++|++.||+++++.+|.
T Consensus 66 ~~~~~~~Le~~L~~~fgLk~~iVvp~ 91 (318)
T PRK15418 66 RFEGCLELENALRQHFSLQHIRVLPA 91 (318)
T ss_pred CCccHHHHHHHHHHHhCCCEEEEEeC
Confidence 44456789999999999999999985
No 35
>TIGR03241 arg_catab_astB succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway.
Probab=20.86 E-value=8.9e+02 Score=24.61 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCCCchhHHHHHHHHHhcCCCc------ccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCC-
Q 021621 135 YRDWSLDLQVARKILSTERLPR------FPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGV- 207 (310)
Q Consensus 135 ~~~~~~D~~v~~~l~~~~g~~~------~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv- 207 (310)
++|..+--+..+.||+..++.- ...+-+++.|.++-|= ..+.++.+|+- ..---+.++++.++|++.++.
T Consensus 207 rfPARQt~eAS~AVARlH~L~~~~~vf~qQnp~~Id~GvFHNDV--IaV~N~~vLf~-He~AF~d~~~~~~~ir~k~~~~ 283 (443)
T TIGR03241 207 RYPARQTLEASQAVARLHGLNPAQVVFAQQNPDVIDQGVFHNDV--IAVSNRNVLFH-HQQAFLNQSQVLDELRAKLAGL 283 (443)
T ss_pred CCCchhHHHHHHHHHHHhCCCccceEEeccCHHHHhcCCcccce--EEecCcceeeE-hHhhhcCHHHHHHHHHHHhhcc
Confidence 4566777788889998877653 2467899999988663 23334444431 122234688899999988853
Q ss_pred -ceE--EEcCCCccCeecCCCCccccCCccccccce-eEEEE-----CCeEEeccCCCchhHHHHHHHHHHh----CCCC
Q 021621 208 -MKI--IWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NFYIA-----NGGIITPQFGDKKWDGEAVRVLSQA----FPKY 274 (310)
Q Consensus 208 -~kv--IWL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nfli~-----N~~VivP~fg~~~~D~~Al~~l~~~----fP~r 274 (310)
..+ |=+|..-..| .....||+ |.=++ .-.+|+|+=- . ....+-..++++ -|=+
T Consensus 284 ~~~~~~ieVp~~~vsv------------~DAV~sYLFNSQLlt~pdg~M~Lv~P~Ec-r-~n~~v~~yl~~l~~~~~PI~ 349 (443)
T TIGR03241 284 GQQFVAIEVPDAEVSV------------ADAVSSYLFNSQLLSREDGKMMLVVPEEC-R-ENAAVWAYLNELVAGGGPID 349 (443)
T ss_pred CCCeEEEEeccccCcH------------HHHHHHhhhcceeeecCCCcEEEEechHh-h-cCHHHHHHHHHHHhcCCCcc
Confidence 223 3344211000 01112222 11111 1247788732 2 344555555553 5778
Q ss_pred EEEecCchhHHhhCCCceeeecCccCCC
Q 021621 275 EVVGIERAREIVLGGGNIHCITQQQPAI 302 (310)
Q Consensus 275 ~Vv~I~~~~~l~~~GG~iHCiT~q~P~~ 302 (310)
+|..+| -+.--..|||--|+-.-++-.
T Consensus 350 ~v~~fD-lrqSM~NGGGPACLRLRVvl~ 376 (443)
T TIGR03241 350 EVRVFD-LRESMRNGGGPACLRLRVVLN 376 (443)
T ss_pred eEEEec-chhhhhcCCCceeeeeeeeCC
Confidence 999999 999999999999998776643
No 36
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=20.84 E-value=1.2e+02 Score=22.41 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCEEEecCchhHH----hhCCCceeeecCcc
Q 021621 261 GEAVRVLSQAFPKYEVVGIERAREI----VLGGGNIHCITQQQ 299 (310)
Q Consensus 261 ~~Al~~l~~~fP~r~Vv~I~~~~~l----~~~GG~iHCiT~q~ 299 (310)
++|+..+++-||+.++|-..+...- ..-+|..+|.+-|.
T Consensus 6 ~~~~~r~~e~Fp~~slvef~g~~~PvtI~CP~HG~~~~s~~~~ 48 (60)
T PF05265_consen 6 ESAASRFEEKFPHYSLVEFSGVATPVTIRCPKHGNFTCSTFNS 48 (60)
T ss_pred HHHHHHHHHHCCCceEEEEeCCCCceEEECCCCCcEEeccHHh
Confidence 5678889999999988765533332 24589999988643
No 37
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=20.50 E-value=99 Score=28.67 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCceEEEcCCC
Q 021621 194 KGQIENELKAYLGVMKIIWLPRG 216 (310)
Q Consensus 194 k~eie~~Lk~~LGv~kvIWL~~G 216 (310)
..++|++|++.||+++++.+|..
T Consensus 6 ~~~Le~~L~~~fgLk~~~Vv~~~ 28 (255)
T PF04198_consen 6 NSELEEELKEKFGLKEVIVVPSP 28 (255)
T ss_dssp HHHHHHHHHHHHTSSEEEEESSS
T ss_pred HHHHHHHHHHHhCCCEEEEecCC
Confidence 46899999999999999999853
No 38
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=20.44 E-value=1.2e+02 Score=29.61 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecC
Q 021621 260 DGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQ 297 (310)
Q Consensus 260 D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~ 297 (310)
=.+|++.+++.||+--|+. |+|..=...+| ||=-.
T Consensus 91 v~~air~iK~~~p~l~vi~-DvcLc~YT~hG--HcGil 125 (314)
T cd00384 91 VQRAIRAIKEAVPELVVIT-DVCLCEYTDHG--HCGIL 125 (314)
T ss_pred HHHHHHHHHHhCCCcEEEE-eeeccCCCCCC--cceec
Confidence 3689999999999887665 43766667788 88543
Done!