Query 021621
Match_columns 310
No_of_seqs 159 out of 811
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7c_X Agmatine deiminase; str 100.0 1E-100 5E-105 741.6 25.9 299 3-304 4-376 (383)
2 3hvm_A Agmatine deiminase; hyd 100.0 1.1E-95 4E-100 695.9 21.6 268 13-300 3-330 (330)
3 2jer_A Agmatine deiminase; hyd 100.0 2.3E-94 7.9E-99 700.4 23.9 287 2-301 5-364 (389)
4 2ewo_A Putative agmatine deimi 100.0 1.1E-93 3.6E-98 694.1 26.7 290 2-304 5-371 (377)
5 1xkn_A Putative peptidyl-argin 100.0 8.8E-93 3E-97 682.9 18.5 278 8-302 2-347 (355)
6 1zbr_A AAQ65385, conserved hyp 100.0 1.1E-91 3.9E-96 673.9 20.7 273 10-303 2-339 (349)
7 2ci1_A NG, NG-dimethylarginine 99.9 1.5E-22 5.2E-27 187.8 13.4 226 12-301 11-274 (275)
8 1h70_A NG, NG-dimethylarginine 99.9 1.6E-21 5.6E-26 179.2 16.1 201 40-299 27-255 (255)
9 1jdw_A L-arginine\:glycine ami 99.7 8.4E-18 2.9E-22 165.3 11.5 128 160-306 250-419 (423)
10 1bwd_A ADT, protein (inosamine 99.6 2.7E-16 9.4E-21 150.7 7.4 126 160-303 175-341 (348)
11 2a9g_A Arginine deiminase; arg 99.3 1.6E-12 5.3E-17 127.5 9.3 127 159-301 219-413 (418)
12 3i4a_A N(G),N(G)-dimethylargin 99.3 2.9E-11 1E-15 114.1 16.7 230 13-302 28-305 (308)
13 4e4j_A Arginine deiminase; L-a 97.5 0.00026 8.9E-09 69.3 8.9 52 240-299 374-426 (433)
14 1s9r_A Arginine deiminase; hyd 96.3 0.0019 6.5E-08 62.9 3.5 54 238-299 349-403 (410)
15 1wdd_S Ribulose bisphosphate c 58.2 26 0.00089 28.5 6.6 79 190-280 19-104 (128)
16 2hw4_A 14 kDa phosphohistidine 40.0 19 0.00066 29.8 3.1 25 252-277 114-138 (144)
17 2nmm_A 14 kDa phosphohistidine 39.9 18 0.00061 29.7 2.8 25 252-277 105-129 (135)
18 2dew_X Protein-arginine deimin 38.5 20 0.00068 36.7 3.5 57 240-298 595-657 (671)
19 3i4a_A N(G),N(G)-dimethylargin 35.9 23 0.00079 32.6 3.3 39 240-280 152-190 (308)
20 2r5f_A Transcriptional regulat 35.6 24 0.00082 31.5 3.3 28 187-214 2-29 (264)
21 3nze_A Putative transcriptiona 33.0 37 0.0013 30.3 4.1 26 187-212 2-27 (267)
22 3kv1_A Transcriptional repress 25.8 48 0.0016 29.6 3.5 25 190-215 6-30 (267)
23 3efb_A Probable SOR-operon reg 25.5 40 0.0014 30.0 2.9 27 189-215 8-34 (266)
24 1mwp_A Amyloid A4 protein; hep 23.8 53 0.0018 25.3 2.9 38 259-296 38-80 (96)
25 3djh_A Macrophage migration in 21.3 50 0.0017 25.3 2.4 65 141-208 19-90 (114)
26 1ynf_A Succinylarginine dihydr 21.0 4.5E+02 0.015 25.4 9.2 147 136-300 220-382 (458)
27 1s9r_A Arginine deiminase; hyd 20.1 2.4E+02 0.0083 26.6 7.4 54 12-66 11-74 (410)
No 1
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=100.00 E-value=1.5e-100 Score=741.58 Aligned_cols=299 Identities=73% Similarity=1.247 Sum_probs=270.0
Q ss_pred CCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCCe
Q 021621 3 MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPENI 82 (310)
Q Consensus 3 ~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~~v 82 (310)
..++|++.+||||||||||++|||+|| |+.++|+..++++|++|++||++||+||||+|+|++++.+.|+++|+.+|
T Consensus 4 ~~~~p~~~~~rmPaEweph~~~wm~WP---~~~~~W~~~l~~a~~~~~~ia~aIa~~EpV~i~v~~~~~~~a~~~l~~~v 80 (383)
T 3h7c_X 4 SRESPAEHGYYMPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDI 80 (383)
T ss_dssp CSSCTGGGTCBCCCTTSCEEEEEECCC---CCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHSCTTS
T ss_pred CCCCcccCCcccCCCcChhhcEEEEeC---CCCcchhHHHHHHHHHHHHHHHHHhcCCcEEEEECHHHHHHHHHhccCCc
Confidence 467899999999999999999999999 99999999999999999999999999999999999999889999999999
Q ss_pred EEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcccccce
Q 021621 83 RVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMV 162 (310)
Q Consensus 83 ~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~~~lv 162 (310)
+|+++++||+|+||+||+||++++|...+...+++++|||+||+||+|++++|++|++|++++++|++..|++++.++||
T Consensus 81 ~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v~~~~g~~~~~~~lV 160 (383)
T 3h7c_X 81 RVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMI 160 (383)
T ss_dssp EEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHHHHHhCCCcccCCee
Confidence 99999999999999999999987651000011128999999999999877778899999999999999999999999999
Q ss_pred ecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-----------------------
Q 021621 163 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG----------------------- 219 (310)
Q Consensus 163 lEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g----------------------- 219 (310)
+||||||+||+|||||||+||||+||||+|||+|||++||++||++||||||+|+.|
T Consensus 161 lEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~kvIWL~~Gl~gDddTdgHID~larFv~pg~Vl~~ 240 (383)
T 3h7c_X 161 LEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLS 240 (383)
T ss_dssp CCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEE
T ss_pred ecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCcEEEEeCCCcCCCCCcCcceeeeEEecCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999998755
Q ss_pred --------------------------------eecCCCCcc-------------------ccCCccccccceeEEEECCe
Q 021621 220 --------------------------------MIHDGEAKP-------------------RLAGTRLAASYVNFYIANGG 248 (310)
Q Consensus 220 --------------------------------l~~~p~~~~-------------------~~~g~~l~asY~Nfli~N~~ 248 (310)
|+++|.|.+ |.+|+|++|||+||||+|++
T Consensus 241 ~~~d~~dp~y~~~~~~~~~L~~~tda~Gr~~~i~~lp~P~~~~~~~~e~~g~~~~~~~~~r~~g~rl~aSY~Nfli~Ng~ 320 (383)
T 3h7c_X 241 WTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGG 320 (383)
T ss_dssp ECCCTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTE
T ss_pred ccCCCCCcCHHHHHHHHHHHHhhhhccCCceEEEEecCCCccccchhhccccccccccccccCCCcccccccceeeECCE
Confidence 222333322 23588999999999999999
Q ss_pred EEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021621 249 IITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT 304 (310)
Q Consensus 249 VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~ 304 (310)
||||+||++++|++|+++||++||+|+||+|++|++|+++||||||+|||+|+...
T Consensus 321 VivP~fgd~~~D~~A~~~l~~~fP~R~Vv~I~~~~~i~~ggG~iHCiTqQ~P~~~~ 376 (383)
T 3h7c_X 321 IIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT 376 (383)
T ss_dssp EEEECCCCTTHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCHHHHEEEEECCCC
T ss_pred EEEecCCCcccHHHHHHHHHHHCCCCEEEeCccHHHHHhcCCcceEcCCccccCcc
Confidence 99999999768999999999999999999997799999999999999999998543
No 2
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=100.00 E-value=1.1e-95 Score=695.94 Aligned_cols=268 Identities=33% Similarity=0.540 Sum_probs=247.9
Q ss_pred cCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhC-CCCeEEEEeCCCC
Q 021621 13 LMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQL-PENIRVIEMSMNG 91 (310)
Q Consensus 13 r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l-~~~v~~~~~~~~D 91 (310)
|||||||||++|||+|| |+.++|+..++++|++|++||++||+||||+|+|++++...++.++ .++|+++++++||
T Consensus 3 rmPaEweph~~~wm~wP---~~~~~w~~~l~~~~~~~~~ia~aIa~~e~V~i~v~~~~~~~~~~l~~~~~v~~~~~~~nD 79 (330)
T 3hvm_A 3 RMLAEFEKIQAILMAFP---HEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYEMLKNLPGVEIAKVDTND 79 (330)
T ss_dssp EECCTTSCCSEEEEECC---CSSSGGGGGHHHHHHHHHHHHHHHHTTSEEEEEECTTCHHHHHHHHTCTTEEEEECCCSS
T ss_pred ccCCCcCccccEEEEeC---CCCcchhhhHHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcCCCceEEEEcCCCC
Confidence 89999999999999999 9999999999999999999999999999999999988876663333 5799999999999
Q ss_pred ccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHH--hcCCCcccccceecCCceE
Q 021621 92 SWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILS--TERLPRFPHSMVLEGGSIH 169 (310)
Q Consensus 92 ~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~--~~g~~~~~~~lvlEGG~ie 169 (310)
+|+||+||+||. ++|+ +++|||+|||||+| ++|++|++++++|++ ..|+++..++||+||||||
T Consensus 80 ~W~RD~GP~fv~-~~g~--------~~~vdf~FNgWG~k-----~~~~~D~~v~~~~~~~~~~~~~~~~~~lVlEGGsIe 145 (330)
T 3hvm_A 80 TWARDFGAISIE-NHGV--------LECLDFGFNGWGLK-----YPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIE 145 (330)
T ss_dssp SCHHHHSCEEEE-ETTE--------EEEEEEECCHHHHT-----SCCTTGGGHHHHHHHTTCCCSCEEEEEEECCGGGEE
T ss_pred chhhccCceEEe-cCCC--------EEEEeeecccccCc-----CCcchHHHHHHHHHHHhhcCCceecCCeEecCCcEE
Confidence 999999999995 4666 89999999999995 578999999999999 7899999999999999999
Q ss_pred ECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCC-ccC-----------------------------
Q 021621 170 VDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRG-LFG----------------------------- 219 (310)
Q Consensus 170 ~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G-~~g----------------------------- 219 (310)
+||+||+||||+||||+||||+|||+|||++||++||++||||||+| +.|
T Consensus 146 ~DG~GTlltTe~clLn~nRNP~lsk~eiE~~L~~~LGv~kviWL~~G~l~~DdTdgHID~larFv~p~~v~~~~~~d~~d 225 (330)
T 3hvm_A 146 SDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSACEDKND 225 (330)
T ss_dssp ECSSSEEEEEHHHHTCTTTSTTSCHHHHHHHHHHHHCCSEEEEECCCCCTTCCSSCCGGGTEEEEETTEEEEEECCCTTS
T ss_pred ECCCceEEEEeehhcCCCCCCCCCHHHHHHHHHHHhCCCEEEEECCCCcCCCCCCccchheeEecCCCEEEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999 665
Q ss_pred -------------------------eecCCCCccc--cCCccccccceeEEEECCeEEeccCCCchhHHHHHHHHHHhCC
Q 021621 220 -------------------------MIHDGEAKPR--LAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFP 272 (310)
Q Consensus 220 -------------------------l~~~p~~~~~--~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP 272 (310)
|+++|.|.+. .+|+|++|||+||||+|++||||+||++ +|++|+++||++||
T Consensus 226 ~~y~~~~~~~~~L~~~~da~Gr~~~i~~lp~P~~~~~~~g~rl~aSY~Nfli~Ng~VivP~fgd~-~D~~A~~~l~~~fP 304 (330)
T 3hvm_A 226 EHYTALKKMQEELKTFKKLDKTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNDALIVPTYNDP-KDALILETLKQHTP 304 (330)
T ss_dssp TTHHHHHHHHHHHHHCBCTTSCBCEEEEEECCSCCBCTTCCBCCCCTTCCEEETTEEEEEECSCT-THHHHHHHHHTTCS
T ss_pred ccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCccccCCCCCcccchhheeeECCEEEEecCCCh-HHHHHHHHHHHhCC
Confidence 2333444333 3689999999999999999999999999 89999999999999
Q ss_pred CCEEEecCchhHHhhCCCceeeecCccC
Q 021621 273 KYEVVGIERAREIVLGGGNIHCITQQQP 300 (310)
Q Consensus 273 ~r~Vv~I~~~~~l~~~GG~iHCiT~q~P 300 (310)
+ +||+|+ |++|+.+||||||+|||+|
T Consensus 305 ~-~Vv~i~-~~~i~~~gG~iHCiTqQ~p 330 (330)
T 3hvm_A 305 L-EVIGVD-CNTLIKQHGSLHCVTMQLY 330 (330)
T ss_dssp S-EEEEEE-CHHHHHTTCCGGGGCEEEC
T ss_pred C-CEEEEE-hHHHHhCCCccEEccCcCC
Confidence 9 999999 9999999999999999998
No 3
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=100.00 E-value=2.3e-94 Score=700.43 Aligned_cols=287 Identities=47% Similarity=0.844 Sum_probs=268.5
Q ss_pred CCCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCCCC
Q 021621 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLPEN 81 (310)
Q Consensus 2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~~~ 81 (310)
++.++|++.+||||||||||++|||+|| |+.++|+..+.++|++|++||++||+||||+|+|++++.+.|+++|+.+
T Consensus 5 ~~~~~p~~~~~rmPaEweph~~~wm~wP---~~~~~w~~~~~~~~~~~~~ia~aIa~~e~V~i~v~~~~~~~a~~~l~~~ 81 (389)
T 2jer_A 5 IVGSTPKQDGFRMPGEFEPQEKVWMIWP---ERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPE 81 (389)
T ss_dssp CCSCCHHHHTCBCCCTTSCEEEEEEECC---CCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTT
T ss_pred cccCCcccCCcccCCCccchheEEEecC---CCccchhhhHHHHHHHHHHHHHHHhCCCcEEEEECHHHHHHHHHHccCC
Confidence 3567787789999999999999999999 9999999999999999999999999999999999999888899999989
Q ss_pred eEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc-cc
Q 021621 82 IRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HS 160 (310)
Q Consensus 82 v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~-~~ 160 (310)
|+++++++||+|+||+||+||++++|+ +++|+|+||+||++.++||++|..|+++++++++.+|++++. ++
T Consensus 82 V~~~~~~~~D~W~RD~GP~~v~~~~g~--------~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~~~~~~~g~~~~~~~~ 153 (389)
T 2jer_A 82 ITVYEMSNNDAWVRDCGPSFVINDHGE--------IRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDD 153 (389)
T ss_dssp SEEEECCCSSSCHHHHSCEEEECTTSC--------EEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEE
T ss_pred cEEEEcCCCCEecccccceEEecCCCC--------EEEEEeecccccccccccccCccchHHHHHHHHHHcCCCeEecCC
Confidence 999999999999999999999987777 899999999999877777889999999999999999999988 89
Q ss_pred ceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC---------------------
Q 021621 161 MVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG--------------------- 219 (310)
Q Consensus 161 lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g--------------------- 219 (310)
+|+|||+|++||+||+|||++||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 154 ~vlEGGsi~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv~kvIWL~~Gl~~DdTdgHID~~arFv~p~~vl~ 233 (389)
T 2jer_A 154 FVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVAC 233 (389)
T ss_dssp EECCGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEE
T ss_pred eEEccCcEEECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCCCEEEEcCCcCCCCCCCCchhheeEEeCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998755
Q ss_pred ---------------------------------eecCCCCcc------------------ccCCccccccceeEEEECCe
Q 021621 220 ---------------------------------MIHDGEAKP------------------RLAGTRLAASYVNFYIANGG 248 (310)
Q Consensus 220 ---------------------------------l~~~p~~~~------------------~~~g~~l~asY~Nfli~N~~ 248 (310)
|+++|.+.+ +.+|+|+++||+||||+|++
T Consensus 234 ~~~~d~~dp~y~~~~~~~~~L~~~~da~Gr~~~ii~lP~p~~~~~~~~~~~~~~~~g~~~~~~g~rl~asY~Nfli~Ng~ 313 (389)
T 2jer_A 234 IYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDG 313 (389)
T ss_dssp ECCCCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTE
T ss_pred EecCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCcccccccccccccccccccccCCCCccceeeEEEEECCE
Confidence 222333332 45688999999999999999
Q ss_pred EEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021621 249 IITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 301 (310)
Q Consensus 249 VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 301 (310)
||||+||++ +|++|+++||++||+|+||+|+ |++|+++||||||+|||+|+
T Consensus 314 VivP~fgd~-~D~~A~~~L~~~fP~r~Vi~v~-~~~i~~gGG~iHCiTqq~P~ 364 (389)
T 2jer_A 314 VIVPQYGDE-NDRLALEQVQTMFPDKKIVGVN-TVEVVYGGGNIHXITQQEPK 364 (389)
T ss_dssp EEEEECSCT-THHHHHHHHHHHSTTSEEEEEE-CHHHHTTTCCTGGGCEEEEC
T ss_pred EEEccCCCc-hhHHHHHHHHHHCCCCEEEEee-HHHHHhcCCCCeEeccccCc
Confidence 999999999 8999999999999999999999 99999999999999999998
No 4
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=100.00 E-value=1.1e-93 Score=694.13 Aligned_cols=290 Identities=50% Similarity=0.869 Sum_probs=267.1
Q ss_pred CCCCCCCCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC--
Q 021621 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP-- 79 (310)
Q Consensus 2 ~~~~~~~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~-- 79 (310)
+|.++|++.+||||||||||++|||+|| |+.++|+..++++|++|++||++||+||||+|+|++++.+.|+++|+
T Consensus 5 ~~~~~p~~~~~rmPaEweph~~~~m~wP---~~~~~w~~~~~~~~~~~~~ia~aIa~~e~V~~~v~~~~~~~a~~~l~~~ 81 (377)
T 2ewo_A 5 IKNTTPKQDGFRMPGEFEKQKQIWMLWP---WRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSEL 81 (377)
T ss_dssp ECSSCHHHHTCCCCCTTSCEEEEEECCC---CCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred hccCCcccCCcccCCCcChhheEEEecC---CCccchhhhHHHHHHHHHHHHHHHHCCCcEEEEECHHHHHHHHHHhhhc
Confidence 4567888789999999999999999999 99999999999999999999999999999999999988888999986
Q ss_pred --CCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCcc
Q 021621 80 --ENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRF 157 (310)
Q Consensus 80 --~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~ 157 (310)
.+|+++++++||+|+||+||+||++++|+ +++|+|+||+||++.++||++|..|+++++++++.+|++.+
T Consensus 82 ~~~~V~~~~~~~dD~W~RD~Gp~~v~~~~g~--------~~~vdf~FN~WG~~~~g~~~~~~~D~~v~~~~~~~~g~~~~ 153 (377)
T 2ewo_A 82 GSHNIRIIEMTNDDAWIRDCGPTFLVNDKGD--------LRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSY 153 (377)
T ss_dssp TCCSEEEEECCCSSCCTTTSSCEEEECSSSC--------EEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEE
T ss_pred CCCceEEEEcCCCCEecccccceEEEcCCCC--------EEEEEeecccccccccccccCccchhHHHHHHHHHcCCCeE
Confidence 78999999999999999999999987777 89999999999999999999999999999999999999998
Q ss_pred c-ccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-----------------
Q 021621 158 P-HSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG----------------- 219 (310)
Q Consensus 158 ~-~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g----------------- 219 (310)
. +++|+|||+|++||+||+|||++||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 154 ~~~~~vlEGGsi~~dG~GTlltTe~clLn~nRNp~lsk~eie~~Lk~~LG~~kvIWL~~gl~~DdTdgHiD~~arfv~p~ 233 (377)
T 2ewo_A 154 KTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPG 233 (377)
T ss_dssp EEEEEECCGGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETT
T ss_pred ecCCeEEcCCceEECCCceEEEEcccccCCCCCCccCHHHHHHHHHHHcCCCEEEEcCCccCCCCCCCchhheeEEeCCC
Confidence 8 8999999999999999999999999999999999999999999999999999999998655
Q ss_pred -------------------------------------eecCCCCcc------------------ccCCccccccceeEEE
Q 021621 220 -------------------------------------MIHDGEAKP------------------RLAGTRLAASYVNFYI 244 (310)
Q Consensus 220 -------------------------------------l~~~p~~~~------------------~~~g~~l~asY~Nfli 244 (310)
|+++|.+.+ +.+|+|+++||+|||+
T Consensus 234 ~vl~~~~~d~~dp~y~~~~~~~~~L~~~~da~Gr~~~ii~lp~p~~~~~~~~~~g~~~~~g~~~~~~g~rl~asY~Nfli 313 (377)
T 2ewo_A 234 EVACIYTDDKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLI 313 (377)
T ss_dssp EEEEBCCCCTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEE
T ss_pred EEEEEecCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCcccccccccccccccccccccCCCCccceeeEEEE
Confidence 222333322 4567899999999999
Q ss_pred ECCeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCCc
Q 021621 245 ANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPT 304 (310)
Q Consensus 245 ~N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~~ 304 (310)
+|++||||+||++ +|++|+++|+++||+|+||+|+ |++|+++||||||+|||+|+...
T Consensus 314 ~N~~VivP~f~d~-~D~~A~~~L~~~fP~r~Vi~v~-~~~i~~gGG~iHCiTqq~p~~~~ 371 (377)
T 2ewo_A 314 VNGGIILPQYGDE-NDQLAKQQVQEMFPDRKVVGVR-TEEIAYGGGNIHCITQQQPATLE 371 (377)
T ss_dssp ETTEEEEECCSCT-THHHHHHHHHHHSTTSEEEEEC-THHHHTTSCCTTTTCEEEECCC-
T ss_pred ECCEEEEccCCCh-hhHHHHHHHHHHCCCCEEEEee-HHHHHhcCCCCeeeCccccCccc
Confidence 9999999999998 8999999999999999999999 99999999999999999997643
No 5
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=100.00 E-value=8.8e-93 Score=682.95 Aligned_cols=278 Identities=39% Similarity=0.783 Sum_probs=256.9
Q ss_pred CCCCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhH-HHHHhhCC-------
Q 021621 8 ALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQW-ENARSQLP------- 79 (310)
Q Consensus 8 ~~~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~-~~a~~~l~------- 79 (310)
++.+||||||||||++|||+|| |+.++|+..++++|++|++||++||+||||+|+|++++. +.|+++|+
T Consensus 2 ~~~~~rmPaEweph~~~~m~wP---~~~~~w~~~~~~~~~~~~~ia~aIa~~e~V~i~v~~~~~~~~a~~~l~~~~~~~~ 78 (355)
T 1xkn_A 2 SEPTYFMPPEWAPHASTWLSWP---HKLESWPGKFEPVPAVFAELAYQLSRSETVNINVLDDAMEAQARELLKERDPEGK 78 (355)
T ss_dssp CCCEEECCCTTSCEEEEEEECC---CCGGGSTTCCTTHHHHHHHHHHHHHHHSEEEEEESSHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCceeCCCcCccceEEEecC---CCccchhhHHHHHHHHHHHHHHHHhCCCcEEEEECcHHHHHHHHHHhhhcccccC
Confidence 4569999999999999999999 999999999999999999999999999999999999887 56888885
Q ss_pred --CCeEEEEeCCCCccccccCceEEEc-CCC-CCCCCCCCce-eEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCC
Q 021621 80 --ENIRVIEMSMNGSWFRDTGPTIVVN-KSS-ASSGAQAPKV-AGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERL 154 (310)
Q Consensus 80 --~~v~~~~~~~~D~W~RD~gPi~v~~-~~g-~~~~~~~~~~-~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~ 154 (310)
.+|+|+++++||+|+||+||+||++ ++| + + ++|||+||+||+| |.+|+.|+++++++++.+|+
T Consensus 79 ~~~~v~~~~~~~~D~W~RD~GP~fv~~~~~g~~--------~~~~vdf~FN~WG~k----~~~~~~D~~v~~~~~~~~g~ 146 (355)
T 1xkn_A 79 YAERIVFHRIPTNDAWCRDHGPNYVIRTQDGRR--------DKVIMNWEYNAWGGK----YEPYDDDNAVPERVAKAQGL 146 (355)
T ss_dssp TGGGEEEEECCCSSSCHHHHSCEEEEEEETTEE--------EEEEEEEECCHHHHT----SSCCHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEcCCCCchhhcCcceEEEecCCCcc--------eeEEEcceeeccccc----CccCchHHHHHHHHHHHcCC
Confidence 5899999999999999999999987 666 6 7 9999999999995 66699999999999999999
Q ss_pred CcccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC---------------
Q 021621 155 PRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG--------------- 219 (310)
Q Consensus 155 ~~~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g--------------- 219 (310)
+++.+++|+|||+|++||+||+|||++||||+||||+|||+|||++|+++||++||||||+|+.|
T Consensus 147 ~~~~~~~vlEGG~i~~dG~GTlltT~~clLn~nRNp~ls~~~ie~~L~~~LG~~~viwL~~Gl~~DdtdgHiD~~arfv~ 226 (355)
T 1xkn_A 147 PMVSTGMVLEGGAIDVNGAGLLLTTTACLLNPNRNPSLGKAEIEAQLRRYLGIEKVLWLGDGIAGDDTDGHVDDMARFVN 226 (355)
T ss_dssp CEEEEEEECCGGGEEECSSSEEEEEHHHHTCTTTCTTCCHHHHHHHHHHHHCCSEEEEECCCCTTCTTSSCGGGTEEEEE
T ss_pred CeecCCeEEccCcEEECCCceEEEEeeeecCCCCCCCCCHHHHHHHHHHHcCCcEEEEeCCccCCCCCCcchhheeEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999988655
Q ss_pred ---------------------------------------eecCCCCcc-ccCCccccccceeEEEECCeEEeccCCCchh
Q 021621 220 ---------------------------------------MIHDGEAKP-RLAGTRLAASYVNFYIANGGIITPQFGDKKW 259 (310)
Q Consensus 220 ---------------------------------------l~~~p~~~~-~~~g~~l~asY~Nfli~N~~VivP~fg~~~~ 259 (310)
|+++|.+.+ +.+|+|+++||+|||++|++||||+||++ +
T Consensus 227 p~~vl~~~~~d~~d~~y~~~~~~~~~L~~~~da~Gr~~~ii~lp~p~~~~~~g~rl~asY~Nfli~Ng~VivP~fgd~-~ 305 (355)
T 1xkn_A 227 ENTVVIAVEEDPEDENYKPLRENYELLKTMTGLDGKPLNIVKLPMPEPVYYDGERLPASYANFYIANTVVLVPTYRCP-R 305 (355)
T ss_dssp TTEEEEECCCCTTSTTHHHHHHHHHHHTTCBCTTSCBCEEEEECCCSCCEETTEECCCCTTCCEECSSEEEEEECSST-H
T ss_pred CCEEEEEcCCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCccccCCCcccceeeEEEEECCEEEEeeCCCc-c
Confidence 122233322 35678999999999999999999999999 8
Q ss_pred HHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCC
Q 021621 260 DGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 302 (310)
Q Consensus 260 D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~ 302 (310)
|++|+++|+++||+|+||+|+ |++|+++||||||+|||+|+.
T Consensus 306 D~~A~~~L~~~fP~r~Vi~v~-~~~i~~gGG~iHCiTqq~p~~ 347 (355)
T 1xkn_A 306 DQQAIDILQQCFPKREVVGID-CSDLIWGLGAIHCVTHEEPAM 347 (355)
T ss_dssp HHHHHHHHHHHCTTSEEEEEE-CTTGGGGSCCTTTTCEEEECC
T ss_pred cHHHHHHHHHHCCCCEEEEee-HHHHHHcCCCCeeeCccchhh
Confidence 999999999999999999999 999999999999999999964
No 6
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6
Probab=100.00 E-value=1.1e-91 Score=673.90 Aligned_cols=273 Identities=32% Similarity=0.546 Sum_probs=251.3
Q ss_pred CCccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHHcCccEEEEeCchhHHHHHhhCC----CCeEEE
Q 021621 10 HGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQWENARSQLP----ENIRVI 85 (310)
Q Consensus 10 ~~~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia~~e~V~v~v~~~~~~~a~~~l~----~~v~~~ 85 (310)
.+||||||||||++|||+|| |+.++|+..++++|++|++||++||+||||+|+|++++ .|+++|+ .+|+|+
T Consensus 2 ~~~rmPaEwep~~~~~m~wP---~~~~~w~~~l~~~~~~~~~ia~aIa~~e~V~i~v~~~~--~a~~~l~~~~~~~v~~~ 76 (349)
T 1zbr_A 2 TKRLFLPEWAPQEAVQLTWP---HDRTDWAYMLDEVETCFVRIATAILRHERLIVVCPDRK--RVFGLLPPELHHRLYCF 76 (349)
T ss_dssp -CEEECCSSSCEEEEEEECC---CTTSGGGGGHHHHHHHHHHHHHHHTTTSEEEEEESCHH--HHHHHSCGGGTTTEEEE
T ss_pred CCceeCCCcCceeeEEEEcC---CCCcchhhHHHHHHHHHHHHHHHHhCCCcEEEEECCHH--HHHHHhhhcCCCceEEE
Confidence 47999999999999999999 99999999999999999999999999999999999987 6888997 789999
Q ss_pred EeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHH--HhcCCCc-c--ccc
Q 021621 86 EMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKIL--STERLPR-F--PHS 160 (310)
Q Consensus 86 ~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~--~~~g~~~-~--~~~ 160 (310)
++++||+|+||+||+||+++ |+ +++|||+||+||+| ++|..|++++++++ +.+|+++ . .++
T Consensus 77 ~~~~nD~W~RD~GP~fv~~~-~~--------~~~vdf~FN~WG~k-----~~~~~D~~v~~~l~~~~~~g~~~~~~~~~~ 142 (349)
T 1zbr_A 77 ELPSNDTWARDHGGISLLAD-GR--------PMIADFAFNGWGMK-----FAAHHDNLITRRLHALGLFAEGVTLDNRLA 142 (349)
T ss_dssp ECCCSCCCHHHHSCEEEEET-TE--------EEEEEEECCHHHHS-----SCCTTGGGHHHHHHHTTCBCTTCEEEEEEE
T ss_pred ECCCCCeeeccCcceEEecC-Cc--------eEEEeeeeeccccc-----cCccccHHHHHHHHhhhhcCCceeeecCCC
Confidence 99999999999999999865 44 79999999999995 45899999999999 6799998 6 688
Q ss_pred ceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCC-ccC--------------------
Q 021621 161 MVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRG-LFG-------------------- 219 (310)
Q Consensus 161 lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G-~~g-------------------- 219 (310)
+|+|||||++||+||+|||++||||+||||+|||+|||++||++||++||||||+| +.|
T Consensus 143 ~vlEGGsi~~dG~GTlltTe~clLn~nRNp~ls~~eie~~L~~~LGv~kviWL~~G~l~~DdTdgHiD~larFv~p~~vl 222 (349)
T 1zbr_A 143 FVLEGGALETDGEGTLLTTDSCLFEPNRNAGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIV 222 (349)
T ss_dssp EECCGGGCCBCSSSEEEEEHHHHTCTTTSTTSCHHHHHHHHHHHSCCSEEEEESSCCCTTCCSSSCGGGSEEEEETTEEE
T ss_pred EEEcCCcEEECCCceEEEeeeeeecCCcCCCCCHHHHHHHHHHHhCCcEEEEecCCccCCCCcCcchhheEEecCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999998 655
Q ss_pred ----------------------------------eecCCCCcc-ccCCccccccceeEEEECCeEEeccCCCchhHHHHH
Q 021621 220 ----------------------------------MIHDGEAKP-RLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAV 264 (310)
Q Consensus 220 ----------------------------------l~~~p~~~~-~~~g~~l~asY~Nfli~N~~VivP~fg~~~~D~~Al 264 (310)
|+++|.+.+ +.+|+|+++||+|||++|++||||+||++ +|++|+
T Consensus 223 ~~~~~d~~d~~y~~~~~~~~~L~~~~da~Gr~~~ii~lp~p~~~~~~g~rl~asY~Nfli~Ng~VivP~fgd~-~D~~A~ 301 (349)
T 1zbr_A 223 YVRSEDPSDEHYSDLTAMEQELKELRRPDGQPYRLVPLPMAEALYDGADRLPATYANFLIINGAVLVPTYDSH-LDAVAL 301 (349)
T ss_dssp EEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEECCCCCEETTEECCCCSSCCEEETTEEEEEECSST-TTTHHH
T ss_pred EEcCCCCCCccHHHHHHHHHHHHhhhhccCCceEEEEeCCCCccccCCCcccceeeEEEEECCEEEEeeCCCc-ccHHHH
Confidence 122233322 45688999999999999999999999999 899999
Q ss_pred HHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCCCC
Q 021621 265 RVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIP 303 (310)
Q Consensus 265 ~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~~~ 303 (310)
++||++||+|+||+|+ |++|+++||||||+|||+|+..
T Consensus 302 ~~l~~~fP~r~Vv~i~-~~~i~~~gG~iHCiTqq~P~~~ 339 (349)
T 1zbr_A 302 SVMQGLFPDREVIGID-CRPLVKQHGSLHCVTMQYPQGF 339 (349)
T ss_dssp HHHHHHCTTSEEEEEE-CHHHHHTSCCGGGGEEEEETTS
T ss_pred HHHHHHCCCCEEEEee-HHHHHhcCCCCeeeCccccCCC
Confidence 9999999999999999 9999999999999999999753
No 7
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A*
Probab=99.88 E-value=1.5e-22 Score=187.75 Aligned_cols=226 Identities=10% Similarity=0.039 Sum_probs=158.3
Q ss_pred ccCCCCCccceeEEEecCCCCCCCCCchhhhHHHHHHHHHHHHHHH--cCccEEEEeCchhHHHHHhhCCCCeEEEEeCC
Q 021621 12 YLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAIS--KFEPVTVCASAAQWENARSQLPENIRVIEMSM 89 (310)
Q Consensus 12 ~r~paEwe~~~~~~lawP~~~~~~~~w~~~l~~~~~~~~~la~aia--~~e~V~v~v~~~~~~~a~~~l~~~v~~~~~~~ 89 (310)
.|.|+++-++...||. + .. ...++.|++++.++++++. ....|..+...+. -.
T Consensus 11 v~~p~~~~~~~~~~~~-~---~~----~~~~~~A~~e~~~~~~~L~~~~Gv~V~~l~~~~~-----------------~P 65 (275)
T 2ci1_A 11 VRALPESLAQQALRRT-K---GD----EVDFARAERQHQLYVGVLGSKLGLQVVQLPADES-----------------LP 65 (275)
T ss_dssp EECCCTTHHHHSCCSS-C---CS----CCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCTT-----------------CT
T ss_pred EeCCCHHHhhhhcccc-c---cC----CCCHHHHHHHHHHHHHHHHhccCcEEEEeCCCCC-----------------CC
Confidence 5677777776655553 2 11 2357889999999999996 3567777654321 13
Q ss_pred CCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc---ccceecCC
Q 021621 90 NGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP---HSMVLEGG 166 (310)
Q Consensus 90 ~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~---~~lvlEGG 166 (310)
|.+|+||.+++ .+ +. ++-.+|-. +....+....+.+++.+|++... .+.++|||
T Consensus 66 d~vF~rD~~~v--~~--~~----------~~~~~~~~---------~~R~~E~~~~~~~~~~~g~~~~~~~~~~~~lEGG 122 (275)
T 2ci1_A 66 DCVFVEDVAVV--XE--ET----------ALITRPGA---------PSRRKEADMMKEALEKLQLNIVEMKDENATLDGG 122 (275)
T ss_dssp TTTCGGGGEEE--ET--TE----------EEECCCSS---------GGGTTHHHHHHHHHHHTTCEEEECCCTTCCCCGG
T ss_pred CceeccceEEE--eC--Cc----------eEEecCCc---------ccccccHHHHHHHHHHcCCCEEEecCCCceEccc
Confidence 77999999974 33 22 33333322 22345667888888888987664 46999999
Q ss_pred ceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCceEEEcCCCccC-e---ec---------CCCCccc----
Q 021621 167 SIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG-M---IH---------DGEAKPR---- 229 (310)
Q Consensus 167 ~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~kvIWL~~G~~g-l---~~---------~p~~~~~---- 229 (310)
+++++|+ |++++.+ +|+ ..+.++.|+++||..+|+||+..-.+ | .. .+.....
T Consensus 123 dv~~~g~-~~~vg~s-----~Rt----~~~~~~~l~~~l~~~~V~~l~~~~~~HlD~~~~~~~~~~~~~~~~~~~~~~~~ 192 (275)
T 2ci1_A 123 DVLFTGR-EFFVGLS-----KRT----NQRGAEILADTFKDYAVSTVPVVDALHLKSFCSMAGPNLIAIGSSESAQKALK 192 (275)
T ss_dssp GEEECSS-EEEEEES-----SSC----CHHHHHHHHHHCTTSEEEEEECCSSSSGGGSEEEEETTEEEEECSHHHHHHHH
T ss_pred cEEEECC-EEEEEec-----CCC----CHHHHHHHHHhcCCCeEEEeeCCCCcChhhhccccCCCEEEEECchhchHHHH
Confidence 9999999 9999985 454 57778999999998999999742111 1 00 0110000
Q ss_pred ----cC--Cc---ccc-ccceeEEEEC----CeEEecc--CCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCcee
Q 021621 230 ----LA--GT---RLA-ASYVNFYIAN----GGIITPQ--FGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIH 293 (310)
Q Consensus 230 ----~~--g~---~l~-asY~Nfli~N----~~VivP~--fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iH 293 (310)
.. +. .++ .+|+|||.+| |.||+|. ++++ .+.+++++++ +++||+|+ +++|.++|||+|
T Consensus 193 ~l~~l~~~~~~ii~~~~~~~~N~l~~N~l~~g~Vi~p~~~~~~~----~~~~~l~~~~-g~~vi~v~-~~el~k~gGg~h 266 (275)
T 2ci1_A 193 IMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRTPEEYP----ESAKVYEKLK-DHMLIPVS-NSELEKVDGLLT 266 (275)
T ss_dssp HHHHHCSSCCEEEEESSGGGGCCEEEEETTTEEEEEECCTTTCH----HHHHHHTTCT-TSEEEECC-CHHHHTTTCCGG
T ss_pred HHHHHhcCCceEEECCChhhceEEEECCCCCCcEEEecCcccCh----hhHHHHHhcC-CCEEEEEE-cHHHhhCCcCce
Confidence 00 11 112 4999999999 9999998 4444 5666777777 99999999 999999999999
Q ss_pred eecCccCC
Q 021621 294 CITQQQPA 301 (310)
Q Consensus 294 CiT~q~P~ 301 (310)
|+|||++.
T Consensus 267 C~T~~~~R 274 (275)
T 2ci1_A 267 XSSVLINK 274 (275)
T ss_dssp GGCEEECC
T ss_pred EEEEEEec
Confidence 99999873
No 8
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=99.87 E-value=1.6e-21 Score=179.15 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHHHHHHHcC-ccEEEEeCchhHHHHHhhCCCCeEEEEeCCCCccccccCceEEEcCCCCCCCCCCCcee
Q 021621 40 DDALHAQRVFAKVATAISKF-EPVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVA 118 (310)
Q Consensus 40 ~~l~~~~~~~~~la~aia~~-e~V~v~v~~~~~~~a~~~l~~~v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~ 118 (310)
..++.|++++.++++++.+. ..|..+-..+. -.|.+|+||.+.++ + +. ..
T Consensus 27 ~~~~~A~~e~~~~~~~L~~~Gv~V~~l~~~~~-----------------~Pd~vF~rD~~~~~--~--~~--------~~ 77 (255)
T 1h70_A 27 PDYAKALEQHNAYIRALQTCDVDITLLPPDER-----------------FPDSVFVEDPVLCT--S--RC--------AI 77 (255)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEEECCCTT-----------------CTTTTCTTTTEEEC--S--SC--------EE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEcCCccc-----------------CcCcEeecCcEEEE--C--Cc--------EE
Confidence 35789999999999999766 56766654321 14789999999763 2 22 34
Q ss_pred EeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcC-CCcc--cccceecCCceEECCCccEEEecceecCCCCCCCCCHH
Q 021621 119 GIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTER-LPRF--PHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKG 195 (310)
Q Consensus 119 ~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g-~~~~--~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~ 195 (310)
...|.+. ....+....+.+++..| .+.. ..+.++|||+++.||+| ++++.+ +| |.+
T Consensus 78 ~~~m~~~-----------~R~~E~~~~~~~l~~~g~~~v~~~~~~~~lEGGdv~~~g~~-~~vg~s-----~R----t~~ 136 (255)
T 1h70_A 78 ITRPGAE-----------SRRGETEIIEETVQRFYPGKVERIEAPGTVEAGDIMMVGDH-FYIGES-----AR----TNA 136 (255)
T ss_dssp ECBCSSG-----------GGTTHHHHHHHHHHHHSTTCEEECCTTCCBCGGGEEEETTE-EEEEEC-----SS----SCH
T ss_pred EeCCCCh-----------HHhchHHHHHHHHHHcCCCcEEEeCCCceEecceEEEECCE-EEEEEc-----cC----CcH
Confidence 4444333 23445567778888888 8776 56699999999999999 566654 34 578
Q ss_pred HHHHHHHHHh---CCceEEEcCCCccC-e---ec---------CCCC--ccccCCc---cc---cccceeEEEECCeEEe
Q 021621 196 QIENELKAYL---GVMKIIWLPRGLFG-M---IH---------DGEA--KPRLAGT---RL---AASYVNFYIANGGIIT 251 (310)
Q Consensus 196 eie~~Lk~~L---Gv~kvIWL~~G~~g-l---~~---------~p~~--~~~~~g~---~l---~asY~Nfli~N~~Viv 251 (310)
+.++.|++.| |.+ |+|++..-.+ + .. .+.. .....+. .+ .++|+|||.+|+.||+
T Consensus 137 ~~~~~l~~~l~~~g~~-vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~~~~~~~ii~~~~~e~~~~N~l~i~~~Vi~ 215 (255)
T 1h70_A 137 EGARQMIAILEKHGLS-GSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKPEFQDFNIIEIPEEESYAANCIWVNERVIM 215 (255)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECSSSSSGGGSEEECSTTEEEECGGGTTCGGGTTSEEEECCGGGGGGGCCEEETTEEEE
T ss_pred HHHHHHHHHHhhCCCE-EEEEECCCCcchhheeeecCCCEEEEECCcCCHhHhCceEEEECCCcccccccEEEECCEEEe
Confidence 8999999999 987 9999732111 0 00 0100 0000011 01 2799999999999999
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021621 252 PQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 252 P~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
|.+. ..+.++|+++ +++|++|+ +++|.++|||+||+|||+
T Consensus 216 ~~~~-----~~~~~~l~~~--g~~vi~v~-~~el~~~gG~~~C~t~~l 255 (255)
T 1h70_A 216 PAGY-----PRTREKIARL--GYRVIEVD-TSEYRKIDGGVSSMSLRF 255 (255)
T ss_dssp ESSC-----HHHHHHHHTT--TCEEEEEC-CHHHHTTTCCTTTTCEEC
T ss_pred CCCC-----HHHHHHHHHC--CCeEEEec-hHHHhcCCcCCeeeeeeC
Confidence 9864 3588999988 99999999 999999999999999984
No 9
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=99.73 E-value=8.4e-18 Score=165.29 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=100.1
Q ss_pred cceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhC-CceEEEcCCCc--cC--------------e--
Q 021621 160 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLG-VMKIIWLPRGL--FG--------------M-- 220 (310)
Q Consensus 160 ~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LG-v~kvIWL~~G~--~g--------------l-- 220 (310)
..++|||+++++|+ |+++|.+ +|+ +++.||+ |+++|| ..+||||+.+- .+ +
T Consensus 250 e~~lEGGDvl~~G~-~llvg~s-----~Rt---n~~~ie~-L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~ 319 (423)
T 1jdw_A 250 EPCFDAADFIRAGR-DIFAQRS-----QVT---NYLGIEW-MRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSN 319 (423)
T ss_dssp SCCBCGGGEEEETT-EEEECCC-----SSC---CHHHHHH-HHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEEC
T ss_pred cceeecceeEEeCC-EEEEEec-----ccC---CHHHHHH-HHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEe
Confidence 47999999999999 9999987 355 6899997 999998 79999998431 11 0
Q ss_pred ------------------ecCCCCccccCCcccccc----ceeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEE
Q 021621 221 ------------------IHDGEAKPRLAGTRLAAS----YVNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVV 277 (310)
Q Consensus 221 ------------------~~~p~~~~~~~g~~l~as----Y~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv 277 (310)
+.+|.+... .+.++++| |+|||.+| +.||+|. .+..+.++|+++ +++||
T Consensus 320 ~~~~~~~~~~L~~~~~~iI~~p~~~~~-~~~~~~~s~~~~~~N~L~inpg~VI~~~-----~~~~~~~~L~~~--G~~Vi 391 (423)
T 1jdw_A 320 PDRPCHQIDLFKKAGWTIITPPTPIIP-DDHPLWMSSKWLSMNVLMLDEKRVMVDA-----NEVPIQKMFEKL--GITTI 391 (423)
T ss_dssp TTSCBTTHHHHHHTTCEEECCCCCCCC-TTSCCSSSCGGGGGCCEEEETTEEEEET-----TCHHHHHHHHHT--TCEEE
T ss_pred cchhHHHHHHHHhCCCEEEECCCchhc-cccccccccccceeeEEEECCCEEEEeC-----CCHHHHHHHHHC--CCEEE
Confidence 111111111 13345655 99999999 9999987 357899999998 99999
Q ss_pred ecCchhHHhhCCCceeeecCccCCCCccc
Q 021621 278 GIERAREIVLGGGNIHCITQQQPAIPTNA 306 (310)
Q Consensus 278 ~I~~~~~l~~~GG~iHCiT~q~P~~~~~~ 306 (310)
+|+ +++|.++|||+||+||+++....+-
T Consensus 392 ~v~-~~el~kggGg~hC~T~~l~R~~~l~ 419 (423)
T 1jdw_A 392 KVN-IRNANSLGGGFHCWTCDVRRRGTLQ 419 (423)
T ss_dssp EEC-CHHHHTTTCCTTTTEEEEEESCCCC
T ss_pred Eec-HHHHHhCCCCceeeeEEeECCCchh
Confidence 999 9999999999999999998655443
No 10
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=99.63 E-value=2.7e-16 Score=150.66 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=94.2
Q ss_pred cceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCc-eEEEcCCCc-cC--------------ee--
Q 021621 160 SMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVM-KIIWLPRGL-FG--------------MI-- 221 (310)
Q Consensus 160 ~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~-kvIWL~~G~-~g--------------l~-- 221 (310)
+.++|||+++++|. +++++.+ +|| +++.+| .|++.||.+ +++.++... .+ ++
T Consensus 175 ~~~lEGGdv~~~g~-~~~vg~s-----~Rt---~~~~ie-~l~~~l~~~~~v~~~~~~~~~~HlDt~~~~v~~~~vl~~~ 244 (348)
T 1bwd_A 175 EPVFDAANVLRFGT-DLLYLVS-----DSG---NELGAK-WLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNP 244 (348)
T ss_dssp SCCBCGGGEEEETT-EEEEECB-----TTB---CHHHHH-HHHHHHCTTSEEEEESSSCCSSCGGGTEEEEETTEEEECT
T ss_pred ceeEecceEEEECC-EEEEEec-----ccC---CHHHHH-HHHHHhcCCcEEEEecCCCCCcchhheEEecCCCEEEEeC
Confidence 59999999999996 6777765 688 799999 499999642 566665211 11 11
Q ss_pred ------------------cCCCCccccCCcccccc----ceeEEEE-CCeEEeccCCCchhHHHHHHHHHHhCCCCEEEe
Q 021621 222 ------------------HDGEAKPRLAGTRLAAS----YVNFYIA-NGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVG 278 (310)
Q Consensus 222 ------------------~~p~~~~~~~g~~l~as----Y~Nfli~-N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~ 278 (310)
.+|+......++++++| |+|||.+ |+.||+|. .|..+.++|+++ +++||+
T Consensus 245 ~~~~~~~~~~~L~~~~iI~~~~~~~~~~~~~~~~~~~w~~~N~l~i~~~~Vi~~~-----~~~~~~~~L~~~--G~~vi~ 317 (348)
T 1bwd_A 245 SRVNDENMPDFLRSWENITCPELVDIGFTGDKPHCSVWIGMNLLVVRPDLAVVDR-----RQTALIRLLEKH--GMNVLP 317 (348)
T ss_dssp TTCCTTTSCGGGTTSEEEECCCCCCCCCCSSSCSSCGGGGGCCEEEETTEEEEET-----TCHHHHHHHHHT--TCEEEE
T ss_pred CCCCcHHHHHHhcCCEEEECCCccccccccccccccccceeeEEEEcCCEEEEcC-----CCHHHHHHHHHC--CCEEEE
Confidence 01100001124566776 9999966 58999985 478899999998 999999
Q ss_pred cCchhHHhhCCCceeeecCccCCCC
Q 021621 279 IERAREIVLGGGNIHCITQQQPAIP 303 (310)
Q Consensus 279 I~~~~~l~~~GG~iHCiT~q~P~~~ 303 (310)
|+ +++|.++|||+||+|||+....
T Consensus 318 v~-~~el~~ggGg~hC~T~~l~R~~ 341 (348)
T 1bwd_A 318 LQ-LTHSRTLGGGFHCATLDVRRTG 341 (348)
T ss_dssp EC-CTTHHHHTCCTTTTCEEEEESC
T ss_pred Ec-hHHHhcCCCCccccceeeEcCC
Confidence 99 9999999999999999997544
No 11
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A*
Probab=99.35 E-value=1.6e-12 Score=127.50 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=92.5
Q ss_pred ccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhC---CceEEEcCCCc----cC------------
Q 021621 159 HSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLG---VMKIIWLPRGL----FG------------ 219 (310)
Q Consensus 159 ~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LG---v~kvIWL~~G~----~g------------ 219 (310)
.+.++|||.++++|+||++++. .+|| +++.+++..+..|| .++|+|++.+- ..
T Consensus 219 ~~~~lEGGDvl~~g~~~llvG~-----s~RT---n~~~ie~l~~~l~~~g~~~~V~~l~~~~~~~~~HLDt~~~~l~~~~ 290 (418)
T 2a9g_A 219 GSSTLEGGDVMPIGNGVVLIGM-----GERS---SRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDL 290 (418)
T ss_dssp TTCCCCGGGEECCSSSEEEEEE-----SSSS---CHHHHHHHHHHHHHTTSCSEEEEEECCCCSSCCCHHHHEEEEETTE
T ss_pred CCCcEecceEEEECCceEEEEc-----CCcC---CHHHHHHHHHHhcCCCCccEEEEEecCCCCCCcChhheeEecCCCE
Confidence 3589999999999999999886 3688 78888886666557 78999997541 11
Q ss_pred -ee-c--CCCC---c------------------c-----cc----CCc--------------cccccceeEEEEC-CeEE
Q 021621 220 -MI-H--DGEA---K------------------P-----RL----AGT--------------RLAASYVNFYIAN-GGII 250 (310)
Q Consensus 220 -l~-~--~p~~---~------------------~-----~~----~g~--------------~l~asY~Nfli~N-~~Vi 250 (310)
++ + .+.. . . .. ++- ....+|+|+|.+| +.||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~~g~~~~~iI~~~~d~~~~~~e~~~~~~N~L~i~pg~Vi 370 (418)
T 2a9g_A 291 VTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVV 370 (418)
T ss_dssp EEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCHHHHHHHHTTCSCCEEEECC-------CCSCCCCCCCEEEETTEEE
T ss_pred EEEECCccCCccceeeccccccccceeecccchhHHHHHHHhcCCCceEEEeCCCchhhhhhHHhhccCcEEEECCCEEE
Confidence 00 0 0000 0 0 00 001 0125899999887 8787
Q ss_pred eccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCccCC
Q 021621 251 TPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 301 (310)
Q Consensus 251 vP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~P~ 301 (310)
+ |+. ...+.++|+++ +++||+|+ +++|.++|||+||+|++++.
T Consensus 371 ~--y~~---~~~~~~~L~~~--G~eVi~v~-~sel~kggGg~hCmT~~l~R 413 (418)
T 2a9g_A 371 G--YDR---NTYTNTLLRKA--GVEVITIS-ASELGRGRGGGHAMTCPIVR 413 (418)
T ss_dssp E--ETT---CHHHHHHHHHT--TCEEEEEC-HHHHGGGSCCTGGGCEEEEE
T ss_pred E--eCC---CHHHHHHHHHC--CCEEEEec-hHHHhhcCCCceecceeEec
Confidence 5 544 35788889998 99999999 99999999999999999874
No 12
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=99.33 E-value=2.9e-11 Score=114.12 Aligned_cols=230 Identities=12% Similarity=0.080 Sum_probs=142.6
Q ss_pred cCCCCCccceeEEEecCCCCCCCC-----Cc----hhhhHHHHHHHHHHHHHHH-cC-ccEEEEeCchhHHHHHhhCCCC
Q 021621 13 LMPAEWEPHSQCWMGWPVRYERLD-----NW----RDDALHAQRVFAKVATAIS-KF-EPVTVCASAAQWENARSQLPEN 81 (310)
Q Consensus 13 r~paEwe~~~~~~lawP~~~~~~~-----~w----~~~l~~~~~~~~~la~aia-~~-e~V~v~v~~~~~~~a~~~l~~~ 81 (310)
-||.+|..=..+++.=| ...- .| +..++.|++++.++++++- +. -.|..+- +.+ .+
T Consensus 28 ~~~~~~~~~~~aivr~p---~~s~~~~~~~~~~~~~~d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~-~~~------~~--- 94 (308)
T 3i4a_A 28 GHPAAFGRATHAVVRAL---PESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGLQVVELP-ADE------SL--- 94 (308)
T ss_dssp ---CCTTCCSEEEEECC---CTTHHHHSCCSSCCCCCCHHHHHHHHHHHHHHHHTTTCCEEEEEC-CCT------TC---
T ss_pred cCcccccceeEEEEeCC---CHHHhccccccccCCCCCHHHHHHHHHHHHHHHhhcCCCEEEEcC-CCC------CC---
Confidence 36778888888888777 3210 11 1346678888888888886 33 2333332 111 11
Q ss_pred eEEEEeCCCCccccccCceEEEcCCCCCCCCCCCceeEeeeeeccCCCCCCCCCCCCchhHHHHHHHHHhcCCCccc---
Q 021621 82 IRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP--- 158 (310)
Q Consensus 82 v~~~~~~~~D~W~RD~gPi~v~~~~g~~~~~~~~~~~~vdf~FN~WG~k~~~~~~~~~~D~~v~~~l~~~~g~~~~~--- 158 (310)
-|-+++||.+- +.+ + .++-.++. | +.........+.+.+..|.+...
T Consensus 95 -------Pd~vF~rD~~~--vi~-~-----------~vii~~m~-~--------~~Rr~E~~~~~~~l~~~g~~i~~~~~ 144 (308)
T 3i4a_A 95 -------PDCVFVEDVAV--VCE-E-----------TALITRPG-A--------PSRRKEVDMMKEALEKLQLNIVEMKD 144 (308)
T ss_dssp -------TTTTCGGGGEE--EET-T-----------EEEECCCS-S--------GGGGGGHHHHHHHHHTTTCEEEECCC
T ss_pred -------CCeEeecCeEE--EEC-C-----------EEEEeCCC-c--------hhhhhhHHHHHHHHHHCCCeEEEccC
Confidence 25589999885 332 1 23333332 1 12223334556666777877654
Q ss_pred ccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHh-CCceEEEcCCC-ccC------e------ecCC
Q 021621 159 HSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYL-GVMKIIWLPRG-LFG------M------IHDG 224 (310)
Q Consensus 159 ~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~L-Gv~kvIWL~~G-~~g------l------~~~p 224 (310)
.+..+|||.+..+|+. +++-.+ .| |..+.-+.|++.| |. +|+.++-. ... + +-.+
T Consensus 145 ~~~~lEGGDvl~~g~~-v~vG~s-----~R----Tn~~gi~~l~~~l~~~-~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~ 213 (308)
T 3i4a_A 145 ENATLDGGDVLFTGRE-FFVGLS-----KR----TNQRGAEILADTFKDY-AVSTVPVADGLHLKSFCSMAGPNLIAIGS 213 (308)
T ss_dssp TTCCCCGGGEEECSSC-EEEEES-----SS----CCHHHHHHHHHHTTTS-CEEEEECCTTCCGGGSEEEEETTEEEEEC
T ss_pred CCCcCccceEEEECCE-EEEEEc-----hh----cCHHHHHHHHHHcCCC-eEEEEECCCccChhheEEeeCCCEEEEEC
Confidence 3589999999999975 555432 12 4466667788888 64 68777532 111 0 0001
Q ss_pred CCccc-------c---CCc-c--c-cccceeEEEEC-----CeEEec-cCCCchhHHHHHHHHHHhCCCCEEEecCchhH
Q 021621 225 EAKPR-------L---AGT-R--L-AASYVNFYIAN-----GGIITP-QFGDKKWDGEAVRVLSQAFPKYEVVGIERARE 284 (310)
Q Consensus 225 ~~~~~-------~---~g~-~--l-~asY~Nfli~N-----~~VivP-~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~ 284 (310)
..... . .+. . + ...++|+|.+| ++|++| .++.+ .+.++++.+ |+++|++|+ +++
T Consensus 214 ~~~~~~~l~~l~~~~~~~~~iI~vpe~~a~N~L~ln~~~~~~vvi~~~~~~~p-~~~~~l~~l----~g~~vi~vd-~se 287 (308)
T 3i4a_A 214 SESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYP-ESAKVYEKL----KDHMLIPVS-MSE 287 (308)
T ss_dssp SHHHHHHHHHHHHTCSSCCEEEEESSGGGGCCEEEEETTTEEEEEEECTTTCH-HHHHHHHHC----TTEEEEEEC-CHH
T ss_pred chhcHHHHHHHHhhccCCCEEEECChHHhCCEEEEccCCCCCEEEecCcccCc-ccHHHHHhc----CCCEEEEec-HHH
Confidence 10000 0 111 1 1 13688999999 788898 68888 788877766 899999999 999
Q ss_pred HhhCCCceeeecCccCCC
Q 021621 285 IVLGGGNIHCITQQQPAI 302 (310)
Q Consensus 285 l~~~GG~iHCiT~q~P~~ 302 (310)
+.++|||+||+|++++..
T Consensus 288 l~k~GGsl~C~tl~l~R~ 305 (308)
T 3i4a_A 288 LEKVDGLLTCCSVLINKK 305 (308)
T ss_dssp HHTTTCCSGGGCEEECCC
T ss_pred HHHCCCCceeeEEEEecC
Confidence 999999999999999854
No 13
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=97.49 E-value=0.00026 Score=69.28 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=41.6
Q ss_pred eeEEEE-CCeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021621 240 VNFYIA-NGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 240 ~Nfli~-N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
+|+|-+ ++.||++.- ...-.+.|++. +.+|+.|+ .++|.++|||+||+|+.+
T Consensus 374 ~N~Lai~pg~VI~~~~-----n~~t~~~L~~~--GieVi~i~-~sEl~kggGg~rCmT~pL 426 (433)
T 4e4j_A 374 TNYLTIAPGVVVGYER-----NEKTQKALVEA--GIKVLSFN-GSQLSLGMGSARCMSMPL 426 (433)
T ss_dssp TCCEEEETTEEEEETT-----CHHHHHHHHHT--TCEEEEEC-CTTGGGGSCCTTTTCEEE
T ss_pred cCEEEecCCEEEEeCC-----CHHHHHHHHHC--CCEEEEec-hHHhhcCCCCceeCCeee
Confidence 688866 677777642 23456778886 89999999 999999999999999854
No 14
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Probab=96.33 E-value=0.0019 Score=62.87 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=41.7
Q ss_pred cceeEEEEC-CeEEeccCCCchhHHHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCcc
Q 021621 238 SYVNFYIAN-GGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 299 (310)
Q Consensus 238 sY~Nfli~N-~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q~ 299 (310)
--.|+|.++ |.||+ |.. .....+.|+++ +.+|+.|+ .++|..+|||+||+|+.+
T Consensus 349 ~g~N~L~i~pg~Vi~--~~~---n~~t~~~L~~~--G~~Vi~v~-~sEl~kggGg~rCmt~pl 403 (410)
T 1s9r_A 349 DGTNYLAIRPGVVIG--YSR---NEKTNAALEAA--GIKVLPFH-GNQLSLGMGNARCMSMPL 403 (410)
T ss_dssp TTTCCEEEETTEEEE--ETT---CHHHHHHHHHT--TCEEEEEC-CHHHHTTSCCTTTTCEEE
T ss_pred ccCCEEEECCCEEEe--cCC---CHHHHHHHHHC--CCEEEEec-hHHHhcCCCCceeceeEE
Confidence 356999775 66665 432 23444557887 99999999 999999999999999865
No 15
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=58.16 E-value=26 Score=28.48 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEcCCCccCeecCCCCccccCCccccccceeEEEE--CCeEEeccCCCchhHHH---HH
Q 021621 190 PHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYVNFYIA--NGGIITPQFGDKKWDGE---AV 264 (310)
Q Consensus 190 p~lsk~eie~~Lk~~LGv~kvIWL~~G~~gl~~~p~~~~~~~g~~l~asY~Nfli~--N~~VivP~fg~~~~D~~---Al 264 (310)
|.||.+||.+++.-.|.-- |. .+|.-...+.+..++.+.|+-|-+-|-+ . +|.||.. .-.+ .+
T Consensus 19 P~lt~eqI~kQI~Yll~qG---w~----p~lEf~d~~~~~R~~~~~~~~~~~~yW~mWk----LPmFg~t-d~~~Vl~El 86 (128)
T 1wdd_S 19 PPLTVEDLLKQIEYLLRSK---WV----PCLEFSKVGFVYRENHRSPGYYDGRYWTMWK----LPMFGCT-DATQVLKEL 86 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CE----EEEEEESCCSCBCSSCCSTTCCBSCCCEEES----CCCTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---Ce----eeEEecCCCceeeccCCCCCcccCCcccccC----ccCccCC-CHHHHHHHH
Confidence 8899999999998877421 11 1233212221222345677777776655 3 7999976 3333 45
Q ss_pred HHHHHhCCCC--EEEecC
Q 021621 265 RVLSQAFPKY--EVVGIE 280 (310)
Q Consensus 265 ~~l~~~fP~r--~Vv~I~ 280 (310)
+..+++||+. +||++|
T Consensus 87 ~~C~k~~P~~YVRligfD 104 (128)
T 1wdd_S 87 EEAKKAYPDAFVRIIGFD 104 (128)
T ss_dssp HHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHCCCCeEEEEEEe
Confidence 5566679987 578888
No 16
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=40.00 E-value=19 Score=29.82 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=20.9
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEE
Q 021621 252 PQFGDKKWDGEAVRVLSQAFPKYEVV 277 (310)
Q Consensus 252 P~fg~~~~D~~Al~~l~~~fP~r~Vv 277 (310)
-.||.+ .=+.+.++|++.||+++|.
T Consensus 114 ~gfG~A-dH~~t~~iLk~~YpdY~It 138 (144)
T 2hw4_A 114 MAYGPA-QHAISTEKIKAKYPDYEVT 138 (144)
T ss_dssp TTTCBC-CHHHHHHHHHHHSTTSEEE
T ss_pred cccCCC-CHHHHHHHHHHHCCCcEEE
Confidence 357877 6778999999999999974
No 17
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=39.85 E-value=18 Score=29.74 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=20.8
Q ss_pred ccCCCchhHHHHHHHHHHhCCCCEEE
Q 021621 252 PQFGDKKWDGEAVRVLSQAFPKYEVV 277 (310)
Q Consensus 252 P~fg~~~~D~~Al~~l~~~fP~r~Vv 277 (310)
-.||.+ .=+.+.++|++.||+++|.
T Consensus 105 ~~fG~A-dH~~t~~iLk~~ypdy~It 129 (135)
T 2nmm_A 105 MAYGPA-QHAISTEKIKAKYPDYEVT 129 (135)
T ss_dssp TTTBBC-CHHHHHHHHHHHCTTSEEE
T ss_pred cccCCC-CHHHHHHHHHHHCCCcEEE
Confidence 357777 6778999999999999974
No 18
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A* 3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
Probab=38.49 E-value=20 Score=36.75 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=40.5
Q ss_pred eeEEEECCeEEecc-CCCc--hhH---HHHHHHHHHhCCCCEEEecCchhHHhhCCCceeeecCc
Q 021621 240 VNFYIANGGIITPQ-FGDK--KWD---GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 298 (310)
Q Consensus 240 ~Nfli~N~~VivP~-fg~~--~~D---~~Al~~l~~~fP~r~Vv~I~~~~~l~~~GG~iHCiT~q 298 (310)
+|.++.++.+++|. ||-- ..| ++..+.++.+ +.+|.-|+.-..--..+|.+||-|.-
T Consensus 595 VN~lVLg~~l~iPkP~GPvI~G~d~lee~v~~l~~p~--Gl~vtFIDD~~syH~~~GeVHCgTNv 657 (671)
T 2dew_X 595 VNMLVLGKHLGIPKPFGPVINGRCCLEEKVCSLLEPL--GLQCTFINDFFTYHIRHGEVHAGTNV 657 (671)
T ss_dssp TSCEEETTEEEEECCCCCEETTEEHHHHHHHHHHGGG--TCEEEEECCTTTTGGGTCCTTTTEEE
T ss_pred eeeEEeccceecCCCcCCccCCeeHHHHHHHHHHhhc--CCEEEEEcChHHHHhcCCceeccccc
Confidence 59999999999998 8741 234 2333444444 89999996354556789999999853
No 19
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=35.94 E-value=23 Score=32.55 Aligned_cols=39 Identities=10% Similarity=0.280 Sum_probs=31.7
Q ss_pred eeEEEECCeEEeccCCCchhHHHHHHHHHHhCCCCEEEecC
Q 021621 240 VNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 280 (310)
Q Consensus 240 ~Nfli~N~~VivP~fg~~~~D~~Al~~l~~~fP~r~Vv~I~ 280 (310)
-++++.++.+++= .+.. +|.+|++.|++.|++++|+.++
T Consensus 152 GDvl~~g~~v~vG-~s~R-Tn~~gi~~l~~~l~~~~Vv~v~ 190 (308)
T 3i4a_A 152 GDVLFTGREFFVG-LSKR-TNQRGAEILADTFKDYAVSTVP 190 (308)
T ss_dssp GGEEECSSCEEEE-ESSS-CCHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEECCEEEEE-Echh-cCHHHHHHHHHHcCCCeEEEEE
Confidence 4566677776664 5556 8999999999999999999998
No 20
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=35.62 E-value=24 Score=31.47 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEEcC
Q 021621 187 NRNPHLTKGQIENELKAYLGVMKIIWLP 214 (310)
Q Consensus 187 nRNp~lsk~eie~~Lk~~LGv~kvIWL~ 214 (310)
|-.|.....++|++|++.||+++++.+|
T Consensus 2 ~~~~~~~~~~Le~~L~~~fgL~~~~Vv~ 29 (264)
T 2r5f_A 2 NARPQGLHLELETRLQKMYGIRQVIVVE 29 (264)
T ss_dssp ----CCTTHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCccccHHHHHHHHHHHhCCCEEEEeC
Confidence 3445556689999999999999999998
No 21
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=32.98 E-value=37 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHhCCceEEE
Q 021621 187 NRNPHLTKGQIENELKAYLGVMKIIW 212 (310)
Q Consensus 187 nRNp~lsk~eie~~Lk~~LGv~kvIW 212 (310)
|++|.-...++|++|++.||++.+|.
T Consensus 2 ~~~p~~~~~~Le~~L~~~fgL~~~vV 27 (267)
T 3nze_A 2 NASPFDTGPELESQIRNQYGVDVHVV 27 (267)
T ss_dssp -CCTTCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCcchHHHHHHHHHHHhCCcEEEE
Confidence 78898899999999999999955444
No 22
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=25.77 E-value=48 Score=29.58 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEcCC
Q 021621 190 PHLTKGQIENELKAYLGVMKIIWLPR 215 (310)
Q Consensus 190 p~lsk~eie~~Lk~~LGv~kvIWL~~ 215 (310)
|-.+ .++|++|++.||+++++.+|.
T Consensus 6 p~~~-~~Le~~L~~~fgL~~~~Vvp~ 30 (267)
T 3kv1_A 6 PVYS-VQLEQKLVEKFNLKRALISLD 30 (267)
T ss_dssp ---C-HHHHHHHHHHHTCSEEEEECC
T ss_pred CccH-HHHHHHHHHHhCCCEEEEeCC
Confidence 4444 899999999999999999985
No 23
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=25.52 E-value=40 Score=30.04 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHhCCceEEEcCC
Q 021621 189 NPHLTKGQIENELKAYLGVMKIIWLPR 215 (310)
Q Consensus 189 Np~lsk~eie~~Lk~~LGv~kvIWL~~ 215 (310)
+|.-...++|++|++.||+++++.+|.
T Consensus 8 ~p~~~~~~Le~~L~~~fgL~~v~Vvp~ 34 (266)
T 3efb_A 8 YDYNENLWLEQQLKQKFGLKDVVVVSG 34 (266)
T ss_dssp ----CCHHHHHHHHHHHTCSEEEEECC
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEEcC
Confidence 344455799999999999999999985
No 24
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=23.85 E-value=53 Score=25.34 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCCCCEEEecCchhHHhh-----CCCceeeec
Q 021621 259 WDGEAVRVLSQAFPKYEVVGIERAREIVL-----GGGNIHCIT 296 (310)
Q Consensus 259 ~D~~Al~~l~~~fP~r~Vv~I~~~~~l~~-----~GG~iHCiT 296 (310)
..++.|+.-|+.||++.|.-|-.++.-+. ..|+-+|-+
T Consensus 38 ~k~eIL~YCrkvYP~l~ItnVveas~~v~i~~WC~~~~~~Ck~ 80 (96)
T 1mwp_A 38 TKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKT 80 (96)
T ss_dssp SHHHHHHHHHHHSTTSCEEEEEECSSCEEECCEEEGGGEEEEC
T ss_pred ChHHHHHHHHHHCCCCccceeEecCCceeecccccccCcccCC
Confidence 46789999999999999988732443321 134448864
No 25
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=21.31 E-value=50 Score=25.26 Aligned_cols=65 Identities=8% Similarity=0.047 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCCcccccceecCC-ceEECCCc--cEEEecceecCCCCCCC----CCHHHHHHHHHHHhCCc
Q 021621 141 DLQVARKILSTERLPRFPHSMVLEGG-SIHVDGEG--TCLTTEECLLNKNRNPH----LTKGQIENELKAYLGVM 208 (310)
Q Consensus 141 D~~v~~~l~~~~g~~~~~~~lvlEGG-~ie~dG~G--tlltTe~~lln~nRNp~----lsk~eie~~Lk~~LGv~ 208 (310)
-.++.+.+++.+|-|-...-+.++.+ .+...|.. ..+++=+++ ..++|. ++ ++|-+.|.+.||+.
T Consensus 19 ~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P~a~~~v~si--g~~~~~~n~~~s-~~i~~~l~~~Lgi~ 90 (114)
T 3djh_A 19 LSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSI--GKIGGAQNRSYS-KLLCGLLAERLRIS 90 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEES--SCCSHHHHHHHH-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCCEEEEEEEEc--cCCCHHHHHHHH-HHHHHHHHHHhCcC
Confidence 44677888888998876666666654 56666632 344333333 233432 22 35777788888876
No 26
>1ynf_A Succinylarginine dihydrolase; 1.90A {Escherichia coli} SCOP: d.126.1.7 PDB: 1ynh_A* 1yni_A*
Probab=20.96 E-value=4.5e+02 Score=25.41 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=89.2
Q ss_pred CCCchhHHHHHHHHHhcCCCc------ccccceecCCceEECCCccEEEecceecCCCCCCCCCHHHHHHHHHHHhCCce
Q 021621 136 RDWSLDLQVARKILSTERLPR------FPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMK 209 (310)
Q Consensus 136 ~~~~~D~~v~~~l~~~~g~~~------~~~~lvlEGG~ie~dG~GtlltTe~~lln~nRNp~lsk~eie~~Lk~~LGv~k 209 (310)
+|..+--+..+.||+..++.- ...+-+++.|.++-|= ..+..+.+|+- ..---+.++++.++|++.++-=.
T Consensus 220 fPARQt~EAS~AVARlH~L~~~~~vf~qQnp~aId~GvFHNDV--IAV~N~~vLf~-He~AF~d~~~~l~~lr~~~~~~~ 296 (458)
T 1ynf_A 220 YPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDV--IAVSNRQVLFC-HQQAFARQSQLLANLRARVNGFM 296 (458)
T ss_dssp SCCSCBHHHHHHHHHHTTBCGGGEEEEEBCHHHHTTTCCSGGG--TEEEETTEEEE-ETTSBTTHHHHHHHHHHHSTTCE
T ss_pred CCchhHHHHHHHHHHHcCCCccceEEeccCHHHHhcCCcccce--EEeeccceeee-HHhhhcCHHHHHHHHHHhcCCCE
Confidence 466777788899999877753 2467889999987653 23333333331 11222468999999999998655
Q ss_pred EEEcCCCccCeecCCCCccccCCccccccce-eEEE-E----CCeEEeccCCCchhHHHHHHHHHHh----CCCCEEEec
Q 021621 210 IIWLPRGLFGMIHDGEAKPRLAGTRLAASYV-NFYI-A----NGGIITPQFGDKKWDGEAVRVLSQA----FPKYEVVGI 279 (310)
Q Consensus 210 vIWL~~G~~gl~~~p~~~~~~~g~~l~asY~-Nfli-~----N~~VivP~fg~~~~D~~Al~~l~~~----fP~r~Vv~I 279 (310)
+|=+|..-..|. ..-.||+ |.=+ + .-.+|+|.=- . +...+...++++ -|=++|..+
T Consensus 297 ~ieVp~~~vsl~------------DAV~SYLFNSQLlt~pdg~M~Lv~P~Ec-r-~n~~V~~yl~~lv~~~~PI~~v~~~ 362 (458)
T 1ynf_A 297 AIEVPATQVSVS------------DTVSTYLFNSQLLSRDDGSMMLVLPQEC-R-EHAGVWGYLNELLAADNPISELKVF 362 (458)
T ss_dssp EEEECTTTSCHH------------HHHHHTTTSSEEEECTTSCEEEEEEHHH-H-SCHHHHHHHHHHHHSSSSEEEEEEE
T ss_pred EEEeccccCcHH------------HHHHHhhhcceeeecCCCcEEEEcchHH-h-cCHHHHHHHHHHHhCCCCcceEEEe
Confidence 666664211100 0111221 1100 0 1247788732 1 234444445544 477899999
Q ss_pred CchhHHhhCCCceeeecCccC
Q 021621 280 ERAREIVLGGGNIHCITQQQP 300 (310)
Q Consensus 280 ~~~~~l~~~GG~iHCiT~q~P 300 (310)
| -+.--..|||--|+-.-++
T Consensus 363 D-lrqSM~NGGGPACLRLRVv 382 (458)
T 1ynf_A 363 D-LRESMANGGGPACLRLRVV 382 (458)
T ss_dssp C-CHHHHHTTCCTTTTEEEEE
T ss_pred c-hhhhhhcCCCcchheeeee
Confidence 9 9999999999999865554
No 27
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Probab=20.08 E-value=2.4e+02 Score=26.65 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=37.4
Q ss_pred ccCCCCCccceeEEEecCCCCCC--CCCch--------hhhHHHHHHHHHHHHHHHcCccEEEEe
Q 021621 12 YLMPAEWEPHSQCWMGWPVRYER--LDNWR--------DDALHAQRVFAKVATAISKFEPVTVCA 66 (310)
Q Consensus 12 ~r~paEwe~~~~~~lawP~~~~~--~~~w~--------~~l~~~~~~~~~la~aia~~e~V~v~v 66 (310)
+..=.||.+-..++|.=|..+.. ...|. ..++.|++++-++++++-+. -|.|+.
T Consensus 11 ~~v~sE~g~L~~Vlv~rP~~~~~~l~p~~~~~~lf~~~~~~~~A~~Ehd~f~~~Lr~~-GveV~~ 74 (410)
T 1s9r_A 11 IHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKAN-DINVVE 74 (410)
T ss_dssp CBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTT-TCEEEE
T ss_pred cccCCCCccccEEEEECCChHhhcCChhhhhhhcccCCCCHHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 56667999999999998843211 01221 36788999999999999654 455544
Done!