BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021622
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2
OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
Length = 469
Score = 319 bits (817), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/290 (57%), Positives = 219/290 (75%), Gaps = 13/290 (4%)
Query: 1 MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
MASRKLVRDL +++Q P QL + RL L+ NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1 MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59
Query: 61 ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
+SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ GVW EAES KKVS+S+
Sbjct: 60 DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119
Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
K+K SAATEEVK +F+ G +++ G + GE++Q+Q+ S++ +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176
Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
SSISSPK + AF K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFH-----KPLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231
Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEVCSN 286
T++V+ P+K+S W K L+EKMQGYPVFKR++G+SEPVV K QE+ +
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAED 281
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1
OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1
Length = 474
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/292 (52%), Positives = 211/292 (72%), Gaps = 12/292 (4%)
Query: 1 MASRKLVRDLFLSRQRPRFLQL--TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG 58
MA RK++RDL +++Q P QL + ++ R + A GY+S+R+FSVF EFSK I+G
Sbjct: 1 MAIRKIIRDLLITKQ-PLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRG 59
Query: 59 EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
EA SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES KKVS+
Sbjct: 60 EAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSS 119
Query: 119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGK 178
S+K+K+SAA+EEVK +F+ G + + + G +AS GE ++Q+ S++ TF+ K
Sbjct: 120 SVKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAK 174
Query: 179 LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKS 238
KSS+SSPK + F +LKEAK D+ K+ DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct: 175 FKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERS 234
Query: 239 TRTDLVVTPSKKS----MWSKLKEKMQGYPVFKRITGISEPVVTKGQEVCSN 286
RT++VVT +K+S W +EKMQG PVFKR++G+SEPVV K QE+ +
Sbjct: 235 MRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAED 286
>sp|B4U237|UXAC_STREM Uronate isomerase OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uxaC PE=3 SV=1
Length = 465
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDH 156
>sp|C0MA32|UXAC_STRE4 Uronate isomerase OS=Streptococcus equi subsp. equi (strain 4047)
GN=uxaC PE=3 SV=1
Length = 465
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDH 156
>sp|B9DSL9|UXAC_STRU0 Uronate isomerase OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=uxaC PE=3 SV=1
Length = 467
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S Q FK F++ ++ + NP + S ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASQLDKFKAFARTLQ-RSYGNPVYHWSAMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ G++E L T++ E++Y +++ +E + + +K+ A K T+
Sbjct: 109 -VFGIEEVL---TEENAEEIYNRLNTYLLENKVSPRKLIADSKVTFIGTTDH 156
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSKK----IKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSKK----IKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSKK----IKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|B2TS45|MUTS2_CLOBB MutS2 protein OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=mutS2 PE=3 SV=1
Length = 785
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 16 RPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG-EAESNPEFKHSVKEL- 73
RP + L + G S N + +++ + KE K ++ N EF+ ++ L
Sbjct: 473 RPTYRLLIGVPGKS--------NAFEISKRIGLGKEVIDCAKNYMSKENLEFEGLIRNLQ 524
Query: 74 ------KKKAEEIKGVKEE---LKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEK 123
KK A + K +K+E LK++ +Q E+L K D +MEA KK+ A+ K++
Sbjct: 525 EKSIIAKKDARDAKVIKDEADNLKKKYEQKLERLEKVKDKAYMEAREEAKKIVANAKDE 583
>sp|A9N0C1|SYA_SALPB Alanine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=alaS PE=3 SV=1
Length = 876
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 30/227 (13%)
Query: 3 SRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAES 62
+R L R L L + LQ L G T RL G+ + V +E + K+
Sbjct: 368 ARTLERGLALLDEELAKLQGDTLDGE-TAFRLYDTYGFPVDLTADVCRERNIKV-----D 421
Query: 63 NPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122
F+ +++E +++A E G + + + +K D + + + T V E
Sbjct: 422 EAGFEAAMEEQRRRAREASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVE 481
Query: 123 KISAATE----------------------EVKGTFRTGSTDTSAKHDDDVRDGFKASSGE 160
I+A E E+KG T S D + K+ + K S+G
Sbjct: 482 AINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFSVDDTQKYGQAIGHLGKLSAGA 541
Query: 161 EKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKG 207
K V +D E +++ + S+ A L++ +A+KG
Sbjct: 542 LKVGDAVQADVDEARRARIRLNHSATHLMHA--ALRQVLGTHVAQKG 586
>sp|Q0VBM2|FA83B_MOUSE Protein FAM83B OS=Mus musculus GN=Fam83b PE=1 SV=1
Length = 1012
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 209 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 268
D+ K+E + P+ +K + +PS G + R+ L +TP K+ +K K P F R
Sbjct: 745 DVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKA-----PAFYR 799
Query: 269 ITGISEPVVTKGQE 282
+ S+ +V++G+E
Sbjct: 800 MCSSSDTLVSEGEE 813
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,829,202
Number of Sequences: 539616
Number of extensions: 4422656
Number of successful extensions: 22889
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 582
Number of HSP's that attempted gapping in prelim test: 21545
Number of HSP's gapped (non-prelim): 1493
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)