Query 021622
Match_columns 310
No_of_seqs 70 out of 72
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 06:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j1va_ a.4.12.2 (A:) Chromoso 54.4 4.1 0.0003 29.7 3.0 36 41-76 56-91 (94)
2 d1l8qa1 a.4.12.2 (A:290-399) C 34.9 11 0.00082 28.2 2.8 35 42-76 70-104 (110)
3 d2etda1 a.29.9.1 (A:35-183) Hy 25.4 71 0.0052 24.2 6.2 50 47-102 68-117 (149)
4 d1gs9a_ a.24.1.1 (A:) Apolipop 23.3 1.4E+02 0.0098 22.1 9.3 10 66-75 43-52 (144)
5 d1gm5a1 a.24.21.1 (A:7-105) Re 20.2 22 0.0016 27.0 2.0 32 48-79 35-66 (99)
6 d2ev0a2 a.76.1.1 (A:63-136) Ma 15.9 45 0.0033 22.9 2.7 21 56-76 54-74 (74)
7 d1ez3a_ a.47.2.1 (A:) Syntaxin 15.4 1.9E+02 0.014 20.6 9.5 22 112-133 56-77 (124)
8 d1ef1c_ a.137.5.1 (C:) Moesin 15.3 20 0.0014 26.8 0.6 31 58-95 23-53 (90)
9 d1ey1a_ a.79.1.1 (A:) Antiterm 14.4 41 0.003 24.7 2.3 30 35-64 109-138 (139)
10 d2piha1 a.281.1.1 (A:2-124) Un 14.3 2.1E+02 0.015 20.5 6.9 51 53-103 28-82 (123)
No 1
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=54.42 E-value=4.1 Score=29.73 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 021622 41 SSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (310)
Q Consensus 41 s~~rr~gffsef~dnIK~E~~KNkEmKesiKkFrEe 76 (310)
.++|..+-..-=+++|++++..||+|++.|.+++++
T Consensus 56 fg~rdHsTV~~a~kki~~~~~~d~~~~~~i~~i~~~ 91 (94)
T d1j1va_ 56 FGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 91 (94)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 366888888889999999999999999999998876
No 2
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=34.87 E-value=11 Score=28.18 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=30.1
Q ss_pred CCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 021622 42 SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKK 76 (310)
Q Consensus 42 ~~rr~gffsef~dnIK~E~~KNkEmKesiKkFrEe 76 (310)
++|..+-..-=+++|++.+..||+|+.-|..++.+
T Consensus 70 g~rdHsTV~~a~kki~~~~~~D~~l~~~v~~i~~k 104 (110)
T d1l8qa1 70 KRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEKQ 104 (110)
T ss_dssp SCCCSTHHHHHHHHHHHTTC--CCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 66888999999999999999999999999999876
No 3
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=25.36 E-value=71 Score=24.19 Aligned_cols=50 Identities=14% Similarity=0.338 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHhhh
Q 021622 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQV 102 (310)
Q Consensus 47 gffsef~dnIK~E~~KNkEmKesiKkFrEeAekLe~skEaLK~rtkqtArqkyk~V 102 (310)
+.+++.+..|---+...|++|-+ .-|..=..+|.++.+.+ ..||+.|+.-
T Consensus 68 ~~l~~al~~l~~~~E~yP~Lka~-~~~~~l~~~l~~~E~~I-----a~aR~~YN~~ 117 (149)
T d2etda1 68 AELSSALSRLLAIAENYPNLKAD-ANFRQLMDELAGTENRI-----AVARRDYNEA 117 (149)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHC-HHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 46777788888899999999855 44444444577766667 5999999875
No 4
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=23.34 E-value=1.4e+02 Score=22.13 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 021622 66 FKHSVKELKK 75 (310)
Q Consensus 66 mKesiKkFrE 75 (310)
+.+++.++..
T Consensus 43 l~e~~~~l~~ 52 (144)
T d1gs9a_ 43 MDETMKELKA 52 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 5
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.23 E-value=22 Score=27.03 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhhChhhHHHHHHHHHHHHH
Q 021622 48 VFKEFSKKIKGEAESNPEFKHSVKELKKKAEE 79 (310)
Q Consensus 48 ffsef~dnIK~E~~KNkEmKesiKkFrEeAek 79 (310)
.+.|+++.|.+.+.-|||+++-+++|=+=-.+
T Consensus 35 ~~~El~eeIdDpLlen~el~~kLqeF~~Yi~~ 66 (99)
T d1gm5a1 35 RIHQLLKELDDPLLENKDLEEKLQAFLDYVKE 66 (99)
T ss_dssp THHHHHHHCCCGGGGCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHhhcCHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999776333
No 6
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=15.94 E-value=45 Score=22.92 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=16.3
Q ss_pred HHHHhhhChhhHHHHHHHHHH
Q 021622 56 IKGEAESNPEFKHSVKELKKK 76 (310)
Q Consensus 56 IK~E~~KNkEmKesiKkFrEe 76 (310)
+-+-+..||+.++.+++|+++
T Consensus 54 ~l~~~~~~P~~~~~~~~~~~~ 74 (74)
T d2ev0a2 54 LVQYFEEDDARKKDLKSIQKK 74 (74)
T ss_dssp HHHHHHTCHHHHHHHHHHHHC
T ss_pred HHCcchhChHHHHHHHHHhcC
Confidence 334456799999999999874
No 7
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.38 E-value=1.9e+02 Score=20.56 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 021622 112 TVKKVSASMKEKISAATEEVKG 133 (310)
Q Consensus 112 ea~KvS~~vKeKlsa~te~VkE 133 (310)
++.+....||.+|.++...+.+
T Consensus 56 ~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 56 DIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777788888887766654
No 8
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=20 Score=26.83 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=23.1
Q ss_pred HHhhhChhhHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q 021622 58 GEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTT 95 (310)
Q Consensus 58 ~E~~KNkEmKesiKkFrEeAekLe~skEaLK~rtkqtA 95 (310)
.++.||+-+|+-|+.|+.+ |++ +|..+|+|+
T Consensus 23 ~~~ek~k~lq~qL~~L~~E---L~~----~kd~~K~T~ 53 (90)
T d1ef1c_ 23 TEAEKNERVQKHLKALTSE---LAN----ARDESKKTA 53 (90)
T ss_dssp CHHHHCHHHHHHHHHHHHH---HHT----TBCTTCCCH
T ss_pred HHHHHhHHHHHHHHHHHHH---HHH----hhcccccCh
Confidence 3589999999999999999 444 444555554
No 9
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=14.40 E-value=41 Score=24.72 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=24.1
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHHhhhCh
Q 021622 35 VSANGYSSNRQFSVFKEFSKKIKGEAESNP 64 (310)
Q Consensus 35 ~~~r~ys~~rr~gffsef~dnIK~E~~KNk 64 (310)
...+.|++..-.||.|..+++|-.++..|.
T Consensus 109 elak~~~~~~~~~fVNgVL~~i~k~~r~~e 138 (139)
T d1ey1a_ 109 ELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 (139)
T ss_dssp HHTTTTTCSSSSHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCCCCccchHHHHHHHHHHHhCccC
Confidence 345677776789999999999998887764
No 10
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=14.34 E-value=2.1e+02 Score=20.51 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=32.8
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHHhhhhH----HHHhhhhHHHHHHHHhhhh
Q 021622 53 SKKIKGEAESNPEFKHSVKELKKKAEEIKGVK----EELKERTKQTTEQLYKQVD 103 (310)
Q Consensus 53 ~dnIK~E~~KNkEmKesiKkFrEeAekLe~sk----EaLK~rtkqtArqkyk~Vd 103 (310)
+...+..+..|||.++-|++|+..-+++.... +..-....+..+.+|..|+
T Consensus 28 ~~~a~~~v~~d~ea~~li~~f~~~q~~~q~~q~~g~~~~~~e~~~el~~l~~~l~ 82 (123)
T d2piha1 28 FKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 82 (123)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh
Confidence 35567889999999999999987655444311 1111233356677777663
Done!