BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021623
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 178/306 (58%), Gaps = 21/306 (6%)
Query: 1 MAKSSGINPELLLSQKLPEQKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQ 60
MA +SG + QKLP ++ YTE +A +YALGVGA +D D LK++Y G
Sbjct: 1 MAATSGFAGAI--GQKLPPF-SYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSS 52
Query: 61 FIQVLPTFSALFSFE-LEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACI 119
LPTF + + + G ++PGL + +LHG+QY+ELYKP P + ++ EA +
Sbjct: 53 DFSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVV 112
Query: 120 AGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVS 179
A + DKG ++ ++ SY+ + EL+C N+ + FL G+GGF K + V
Sbjct: 113 ADVLDKGSGVVIIMDVYSYSEK--ELICHNQFSLFLVGSGGFGG--------KRTSDKVK 162
Query: 180 V-VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGF 238
V V IP P AV D T +QA +YRLSGD+NPLH DP A AGF +PILHGLCT GF
Sbjct: 163 VAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGF 222
Query: 239 AVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALS 298
+ R +++ D + K + +RF VYPG+TL TEMW +G R+ +Q KV+E +S
Sbjct: 223 SARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVIS 282
Query: 299 -GFVDV 303
+VD+
Sbjct: 283 NAYVDL 288
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 25/314 (7%)
Query: 1 MAKSSGINPELLLSQKLPE------QKTFTYTERDAAIYALGVGACGRDAVDADELKYVY 54
+A++SG E+L +KL E + F + ++ YALG+GA ++A D ++++Y
Sbjct: 299 IAEASGTLLEVL--EKLKEGGGDAIEDAFEFNSKELITYALGIGASVKNAKD---MRFLY 353
Query: 55 HENGQQFIQVLPTFSALFSFELEPSG----AIDLPGLQHDPRLLLHGQQYMELYKPFPSS 110
EN F +PTF L L+ S + LP Q D +LHG+QY+E+ P+S
Sbjct: 354 -ENDADF-AAIPTFFVLPGLLLQMSTDKLLSKALPNSQVDFSNILHGEQYLEIVDDLPTS 411
Query: 111 ASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSY 170
++ + + DKG A++ ++S++ ESG LL N+ T F+ GAG F P +
Sbjct: 412 GTLLTNGKVFDVMDKGSGAVVVTNSESFD-ESGRLLVRNQSTTFIVGAGKFGGKKDPIA- 469
Query: 171 SKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPIL 230
+P+ P QP A + T QA +YRLSGD NPLH DP +A AGF PIL
Sbjct: 470 ---GVVPLQ--PAPNRQPDATVQYTTSEDQAALYRLSGDKNPLHIDPQMALLAGFKTPIL 524
Query: 231 HGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVK 290
HGLCT+GF+VRA++ +P + K + RF V PG+TL ++W QG R+ ++ V
Sbjct: 525 HGLCTLGFSVRAVLAQFADNNPALFKAVKVRFSGPVIPGQTLRVDLWKQGTRINFRTVVV 584
Query: 291 ERNRSALSG-FVDV 303
E + +SG +VD+
Sbjct: 585 ETGKEVISGAYVDL 598
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 154/292 (52%), Gaps = 47/292 (16%)
Query: 13 LSQKLPEQKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALF 72
+ QKLP ++ YTE +A +YALGVGA +D D LK++Y G LPTF +
Sbjct: 2 IGQKLPP-FSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSDFSCLPTFGVI- 54
Query: 73 SFELEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILE 132
+ ++LHG+QY+ELYKP P + ++ EA +A + ++
Sbjct: 55 --------------IGQKSMMVLHGEQYLELYKPLPRAGKLKCEAVVADV-------LVV 93
Query: 133 IETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVF 192
I Y+ EL+C N+ + FL + V+V IP P AV
Sbjct: 94 IIMDVYSYSEKELICHNQFSLFLS-----------------DKVKVAVA-IPNRPPDAVL 135
Query: 193 EDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDP 252
D T +QA +YRLSGD+NPLH DP A AGF +PILHGLCT GF+ R +++ D
Sbjct: 136 TDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDV 195
Query: 253 NMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALS-GFVDV 303
+ K + +RF VYPG+TL TEMW +G R+ +Q KV+E +S +VD+
Sbjct: 196 SRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 247
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 154/292 (52%), Gaps = 37/292 (12%)
Query: 22 TFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGA 81
T TY +RD +YA+G+G +L++ Y E ++F P + F+ +
Sbjct: 51 TATYNQRDLLMYAVGIGES--------DLQFTY-EFDEKF-SAFPLYPVCLPFKGQSQDV 100
Query: 82 IDLP---------GL-QHDPRLLLHGQQYMELYKPF-PSSASIRNEACIAGLHDKGKAAI 130
+ P G+ +P ++LHG+Q +E+ +P PS ++ + + +DKGK +
Sbjct: 101 VPFPPETISAAPDGMPSFNPAMILHGEQSVEILRPLDPSGGTLTGKTKVISFYDKGKGTL 160
Query: 131 LEIETK--SYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQP 188
+E +T+ N +L+ +F+RG G+ K + +P V +IPK QP
Sbjct: 161 METQTQFEDGNGPVAKLIS----GSFIRGLTGYEG--------KGRKLPARV-QIPKRQP 207
Query: 189 FAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFIC 248
E T P QA VYRLSGDYN LH DP +AK+ GF +PILHGLC+MG A RA+ K C
Sbjct: 208 DFNDEFKTSPHQAQVYRLSGDYNSLHIDPEIAKSVGFKQPILHGLCSMGVASRALFKQFC 267
Query: 249 RGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGL-RVIYQVKVKERNRSALSG 299
GD K+I RF +PGET+ T MW +G +V++Q VKER + G
Sbjct: 268 GGDVARFKSIRVRFSSPCFPGETIQTRMWQEGSGKVLFQAVVKERGAVIVDG 319
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 137/275 (49%), Gaps = 23/275 (8%)
Query: 19 EQKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEP 78
E F +T+RD +YA+GVGA D L + + QVLPT++ +
Sbjct: 34 EPMLFEWTDRDTLLYAIGVGAGTGD------LAFTTENSHGIDQQVLPTYAVICCPAFGA 87
Query: 79 SGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKG--KAAILEIETK 136
+ + +P LLHG Q + L+ P P++ + +A + DKG K AI+ + +
Sbjct: 88 AAKVG----TFNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGR 143
Query: 137 SYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYT 196
+ ESG L+ T LR + + P + P P A + T
Sbjct: 144 GCDPESGSLVAETLTTLVLR-----GQGGFGGARGERPAAP----EFPDRHPDARIDMPT 194
Query: 197 QPSQALVYRLSGDYNPLHSDPMVA-KAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMV 255
+ QAL+YRLSGD NPLHSDP A + AGF +PILHGLCT G A RA++ + G +
Sbjct: 195 REDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANI 254
Query: 256 KNIFSRFLLHVYPGETLVTEMW-LQGLRVIYQVKV 289
+I +RF V+PGETL T +W + R +++ +V
Sbjct: 255 TSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEV 289
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 140/285 (49%), Gaps = 23/285 (8%)
Query: 19 EQKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEP 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F
Sbjct: 3 DDPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGK 54
Query: 79 SGAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETK 136
S L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +K
Sbjct: 55 SQNSFAKLLRNFNPXLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSK 114
Query: 137 SYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYT 196
S + +SGEL+ N T F+R + Y+ + PK P +
Sbjct: 115 SVDNKSGELIYSNEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDVPV 169
Query: 197 QPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMV 255
A +YRLSGD NPLH DP AK A F +PILHG CT G + +A+I KF G N +
Sbjct: 170 SEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGXCTYGLSAKALIDKF---GXFNEI 226
Query: 256 KNIFSRFLLHVYPGETLVTEMWLQG-LRVIYQVKVKERNRSALSG 299
K +RF V+PGETL W + +++Q V +R A++
Sbjct: 227 K---ARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTIAINN 268
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 139/287 (48%), Gaps = 23/287 (8%)
Query: 17 LPEQKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFEL 76
+ + + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F
Sbjct: 1 MEDDPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNS 52
Query: 77 EPSGAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIE 134
S L++ +P LLLHG+ Y++++ P P+ I+ KG ++
Sbjct: 53 GKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHG 112
Query: 135 TKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFED 194
+KS + +SGEL+ N T F+R + Y+ + PK P +
Sbjct: 113 SKSVDNKSGELIYSNEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDV 167
Query: 195 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPN 253
A +YRLSGD NPL DP AK A F +PILHG+CT G + +A+I KF
Sbjct: 168 PVSEDLAALYRLSGDRNPLQIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKF------G 221
Query: 254 MVKNIFSRFLLHVYPGETLVTEMWLQG-LRVIYQVKVKERNRSALSG 299
M I +RF V+PGETL W + +++Q V +R A++
Sbjct: 222 MFNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTIAINN 268
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
Length = 134
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 206 LSGDYNPLHSDPMVAKAAGFSRPILHGLC 234
LS D+NPLH DP A F RPI+HG+
Sbjct: 29 LSEDFNPLHLDPAFAATTAFERPIVHGML 57
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 181 VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAV 240
V + P AV + YT + R+SGD NP+H A A I HG+ + +V
Sbjct: 1531 VNLENPIPIAVLDSYTPSTNEPYARVSGDLNPIHVSRHFASYANLPGTITHGMFSSA-SV 1589
Query: 241 RAIIK-FICRGDPNMVKNIFSRFLLHVYPGETLVTEM----WLQGLRVIYQVKVKERNRS 295
RA+I+ + + V+ +F+ V P L T + + G ++I E +
Sbjct: 1590 RALIENWAADSVSSRVRGYTCQFVDMVLPNTALKTSIQHVGMINGRKLIKFETRNEDDVV 1649
Query: 296 ALSGFVDVHRLASSL 310
L+G ++ + ++
Sbjct: 1650 VLTGEAEIEQPVTTF 1664
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 88 QHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETK------SYNAE 141
QHD LL GQ L S +N+ + + G+ +LE+ TK S + E
Sbjct: 1460 QHDIELL--GQT---LVFRLQSLVRFKNKNVYSSVQTIGQV-LLELPTKEIIQVASVDYE 1513
Query: 142 SGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQA 201
+GE N + +L+ G S+ QP ++ IP+S + + A E+Y
Sbjct: 1514 AGESHG-NPVIDYLQRHG--SSIEQPVNFE--NPIPLSGKTPLELRAPASNENYA----- 1563
Query: 202 LVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-FICRGDPNMVKNIFS 260
R+SGDYNP+H + + A I HG+ T AVR++++ + + V++
Sbjct: 1564 ---RVSGDYNPIHVSRVFSSYANLPGTITHGMYTSA-AVRSLVETWAAENNIGRVRSYHV 1619
Query: 261 RFLLHVYPGETLVTEMWLQGL---RVIYQV--KVKERNRSALSGFVDVHR 305
+ V P + + ++ G+ R I +V + K+ + S L G +V +
Sbjct: 1620 NMVGMVLPNDAITVKLEHVGMIAGRKIIKVDARNKDTDESVLQGEAEVEQ 1669
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 206 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRF 262
+SGD+NP+H+D A AG PI+HG+ A + G P + +RF
Sbjct: 1242 VSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVVTA--TDGKPVPPAKLIGWTARF 1299
Query: 263 LLHVYPGETL 272
L V PG+ +
Sbjct: 1300 LGMVKPGDQV 1309
>pdb|1Q6W|A Chain A, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|B Chain B, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|C Chain C, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|D Chain D, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|E Chain E, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|F Chain F, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|G Chain G, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|H Chain H, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|I Chain I, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|J Chain J, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|K Chain K, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|L Chain L, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
Length = 161
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 206 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRG-DPNMVKNIFS---- 260
L+ D+ PLH+D AK F +PI G + A+ + + I D + V F
Sbjct: 42 LTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYDVSSVIAFFGIKDV 101
Query: 261 RFLLHVYPGETL 272
RFL V+ G+T+
Sbjct: 102 RFLRPVFIGDTI 113
>pdb|3IR3|A Chain A, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
pdb|3IR3|B Chain B, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
Length = 148
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 195 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNM 254
+TQ A L+GD NPLH + AK F I+HG+ G + A++ G +
Sbjct: 28 FTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVHGVLINGL-ISALLGTKMPGPGCV 86
Query: 255 VKNIFSRFLLHVYPGETLVTEMWLQGLR-----VIYQVKVKERNRSALSGFVDV 303
+ F +Y GE ++ ++ L+ + V E ++ + G+V V
Sbjct: 87 FLSQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEGWVKV 140
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 185 KSQPFAVFEDYTQPSQALVYR-------------LSGDYNPLHSDPMVAKAAGFSRPILH 231
K +PF FE + Y +SGD NP+H D A F ++H
Sbjct: 25 KVKPFEKFEGELKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFASKTRFGGRVVH 84
Query: 232 GLCTMGFAVRAIIKF 246
G+ T A+ +
Sbjct: 85 GMLTTSLVSAAVARL 99
>pdb|2C2I|A Chain A, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
pdb|2C2I|B Chain B, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
Length = 151
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 196 TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVR 241
TQ L +GD+ +H DP A A F I HG T+ R
Sbjct: 27 TQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFXTLALLPR 72
>pdb|4E3E|A Chain A, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
pdb|4E3E|B Chain B, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
Length = 352
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 29/140 (20%)
Query: 185 KSQPFAVFEDY--------------TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPIL 230
K+ P FED+ T+ AL L G L S A++ G R +
Sbjct: 4 KTNPGNFFEDFRLGQTIVHATPRTITEGDVALYTSLYGSRFALTSSTPFAQSLGLERAPI 63
Query: 231 HGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRFLLHVYPGETLVTEMWLQGLRVIYQV 287
L + I N + N+ RF VYPG+TL T + GLR
Sbjct: 64 DSLLVFHIVFGKTVPDISL---NAIANLGYAGGRFGAVVYPGDTLSTTSKVIGLR----- 115
Query: 288 KVKERNRSALSGFVDVHRLA 307
+N+ +G V VH +
Sbjct: 116 ----QNKDGKTGVVYVHSVG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,126,130
Number of Sequences: 62578
Number of extensions: 372519
Number of successful extensions: 686
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 17
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)