BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021625
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MDU|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Guanidino-L-Glutamate
 pdb|3MDW|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|B Chain B, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|C Chain C, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|D Chain D, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
          Length = 453

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 116 IIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLS 157
           + GLC  +S +  L    FP  D L +G  LG+  D+  SLS
Sbjct: 287 VAGLC--LSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLS 326


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.141    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,502,035
Number of Sequences: 62578
Number of extensions: 317920
Number of successful extensions: 758
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 1
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)