Query 021625
Match_columns 310
No_of_seqs 224 out of 1579
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 80.6 0.32 1.1E-05 32.0 -0.0 29 145-173 12-40 (51)
2 1z2q_A LM5-1; membrane protein 76.9 2.3 7.9E-05 30.7 3.7 28 145-172 19-48 (84)
3 2ayj_A 50S ribosomal protein L 75.9 1.1 3.7E-05 29.9 1.4 30 145-174 17-46 (56)
4 1x4u_A Zinc finger, FYVE domai 75.6 2.4 8.3E-05 30.6 3.5 26 146-171 13-40 (84)
5 1y02_A CARP2, FYVE-ring finger 68.0 2.4 8.3E-05 32.9 2.0 24 148-171 20-45 (120)
6 1wfl_A Zinc finger protein 216 67.1 5.6 0.00019 28.1 3.6 39 147-186 25-68 (74)
7 2yw8_A RUN and FYVE domain-con 66.9 3.7 0.00013 29.4 2.7 27 146-172 18-46 (82)
8 1vfy_A Phosphatidylinositol-3- 65.8 3.1 0.0001 29.2 2.1 24 148-171 12-37 (73)
9 1joc_A EEA1, early endosomal a 64.4 3.2 0.00011 32.4 2.1 25 148-172 70-96 (125)
10 1wfk_A Zinc finger, FYVE domai 64.2 4.7 0.00016 29.4 2.9 26 147-172 9-36 (88)
11 1dvp_A HRS, hepatocyte growth 64.0 5.6 0.00019 33.9 3.8 26 147-172 161-188 (220)
12 3t7l_A Zinc finger FYVE domain 63.2 7.4 0.00025 28.4 3.8 24 148-171 21-46 (90)
13 3zyq_A Hepatocyte growth facto 60.7 4.7 0.00016 34.7 2.7 26 147-172 164-191 (226)
14 1wil_A KIAA1045 protein; ring 52.1 13 0.00043 27.0 3.3 28 144-171 12-39 (89)
15 2cr8_A MDM4 protein; ZF-ranbp 46.0 8.3 0.00028 25.1 1.3 20 150-169 14-33 (53)
16 2c6a_A Ubiquitin-protein ligas 40.9 10 0.00035 24.1 1.2 21 149-169 15-35 (46)
17 2dkt_A Ring finger and CHY zin 35.1 14 0.00048 29.5 1.4 40 146-185 82-125 (143)
18 2jrp_A Putative cytoplasmic pr 34.7 18 0.00063 25.9 1.9 13 161-173 18-30 (81)
19 2dkt_A Ring finger and CHY zin 34.1 16 0.00055 29.1 1.6 31 149-179 103-136 (143)
20 1ffk_W Ribosomal protein L37AE 32.0 21 0.00073 25.0 1.8 31 143-173 23-57 (73)
21 2vrw_B P95VAV, VAV1, proto-onc 29.7 27 0.00093 32.2 2.7 28 146-173 356-386 (406)
22 3u5e_m 60S ribosomal protein L 26.6 17 0.00056 28.0 0.5 24 147-170 93-118 (128)
23 3jyw_9 60S ribosomal protein L 25.6 18 0.00063 25.3 0.5 27 146-172 25-55 (72)
24 2pzo_E CAP-Gly domain-containi 23.2 15 0.00053 22.7 -0.2 12 145-156 18-29 (42)
25 2elu_A Zinc finger protein 406 23.1 22 0.00076 20.8 0.5 9 161-169 9-17 (37)
26 3gj3_B Nuclear pore complex pr 22.9 35 0.0012 20.0 1.3 19 150-168 10-28 (33)
27 1wfh_A Zinc finger (AN1-like) 22.5 99 0.0034 21.0 3.7 39 147-186 15-58 (64)
28 3mpx_A FYVE, rhogef and PH dom 22.5 18 0.00062 33.6 0.0 22 148-169 376-399 (434)
29 2jne_A Hypothetical protein YF 22.2 37 0.0013 25.2 1.6 31 148-179 33-65 (101)
30 1twf_L ABC10-alpha, DNA-direct 21.2 38 0.0013 23.5 1.4 25 148-172 29-56 (70)
31 1wff_A Riken cDNA 2810002D23 p 20.1 89 0.003 22.5 3.2 40 146-186 24-69 (85)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.55 E-value=0.32 Score=32.03 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCCCCcccccccCeEEec
Q 021625 145 ELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (310)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (310)
.....|+.|...-|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 34578999999999999999999875443
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.95 E-value=2.3 Score=30.70 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCC--CCCCcccccccCeEEe
Q 021625 145 ELGVDPDNENSL--SRKRVRYCKICKAHVE 172 (310)
Q Consensus 145 ~~~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 172 (310)
.....|..|+.. --.|-|||+.||+-+=
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEEC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEC
Confidence 345678888763 3468899999998543
No 3
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=75.86 E-value=1.1 Score=29.93 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCCCcccccccCeEEecc
Q 021625 145 ELGVDPDNENSLSRKRVRYCKICKAHVEGF 174 (310)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~ 174 (310)
....+|..|...-|+|+.-|+.||.--+|.
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LRp 46 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLRL 46 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCCc
Confidence 345689999999999999999998755543
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.63 E-value=2.4 Score=30.55 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=19.1
Q ss_pred CCCCCCCCCCC--CCCCcccccccCeEE
Q 021625 146 LGVDPDNENSL--SRKRVRYCKICKAHV 171 (310)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (310)
....|..|+.. --.|-|||+.||+-+
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 34568888763 356899999999744
No 5
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.97 E-value=2.4 Score=32.95 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=18.1
Q ss_pred CCCCCCCCC--CCCCcccccccCeEE
Q 021625 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (310)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (310)
..|..|+.. -..|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 568888763 346899999999844
No 6
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=67.12 E-value=5.6 Score=28.08 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCcccccccCe--EE---ecccccccccccccc
Q 021625 147 GVDPDNENSLSRKRVRYCKICKA--HV---EGFDHHCPAFGNCIG 186 (310)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~--CV---~r~DHHC~Wi~nCIG 186 (310)
.+.|..|+.....-...|+ |+. |- +-=||.|++-..=.|
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 4579999885443347788 775 22 223899987554433
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=66.90 E-value=3.7 Score=29.44 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=19.4
Q ss_pred CCCCCCCCCCC--CCCCcccccccCeEEe
Q 021625 146 LGVDPDNENSL--SRKRVRYCKICKAHVE 172 (310)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 172 (310)
....|..|+.. --.|-|||+.||+-+=
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEC
Confidence 34568888763 3468899999998543
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=65.78 E-value=3.1 Score=29.18 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.8
Q ss_pred CCCCCCCCC--CCCCcccccccCeEE
Q 021625 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (310)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (310)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 358888763 346889999999854
No 9
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.35 E-value=3.2 Score=32.40 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=18.6
Q ss_pred CCCCCCCCC--CCCCcccccccCeEEe
Q 021625 148 VDPDNENSL--SRKRVRYCKICKAHVE 172 (310)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV~ 172 (310)
..|..|... -..|-|||+.||+-+=
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC 96 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFC 96 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCCcCcCCccccccccccCCCCCeEEC
Confidence 568888763 3468999999998543
No 10
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=64.19 E-value=4.7 Score=29.40 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=19.0
Q ss_pred CCCCCCCCCC--CCCCcccccccCeEEe
Q 021625 147 GVDPDNENSL--SRKRVRYCKICKAHVE 172 (310)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 172 (310)
...|..|+.. --.|-|||+.||+-+=
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC 36 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEC
Confidence 3468888763 3468999999998543
No 11
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.95 E-value=5.6 Score=33.94 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=19.2
Q ss_pred CCCCCCCCCC--CCCCcccccccCeEEe
Q 021625 147 GVDPDNENSL--SRKRVRYCKICKAHVE 172 (310)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 172 (310)
...|..|+.. --.|-|||+.||+-+=
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEC
Confidence 3578888753 3468999999998554
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=63.24 E-value=7.4 Score=28.36 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=17.6
Q ss_pred CCCCCCCCC--CCCCcccccccCeEE
Q 021625 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (310)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (310)
..|..|+.. --.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 458888752 245889999998754
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.70 E-value=4.7 Score=34.68 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=18.6
Q ss_pred CCCCCCCCCC--CCCCcccccccCeEEe
Q 021625 147 GVDPDNENSL--SRKRVRYCKICKAHVE 172 (310)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 172 (310)
...|..|+.. --.|-|||+.||+.+=
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeC
Confidence 3578888742 2357899999998543
No 14
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=52.13 E-value=13 Score=26.99 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCeEE
Q 021625 144 SELGVDPDNENSLSRKRVRYCKICKAHV 171 (310)
Q Consensus 144 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV 171 (310)
...+..|..|+++...--.-|++|+|+-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCCCcccCccccccccceeccccccccc
Confidence 3456789999999888888899999953
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=45.98 E-value=8.3 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCcccccccCe
Q 021625 150 PDNENSLSRKRVRYCKICKA 169 (310)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~~ 169 (310)
|.+|+..-||--.||..|-.
T Consensus 14 C~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 14 CTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CSSSCCEECSSCCBCTTTCC
T ss_pred cccccccCCCccchhHHHHH
Confidence 88888888888888877754
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=40.91 E-value=10 Score=24.11 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCcccccccCe
Q 021625 149 DPDNENSLSRKRVRYCKICKA 169 (310)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (310)
.|.+|+..-||--.||..|-.
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTCC
T ss_pred ecccccccCCCccchhhHHHh
Confidence 488999888888888877754
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=35.13 E-value=14 Score=29.49 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCC-CcccccccCeEEec---cccccccccccc
Q 021625 146 LGVDPDNENSLSRK-RVRYCKICKAHVEG---FDHHCPAFGNCI 185 (310)
Q Consensus 146 ~~~~C~~C~~~kP~-Rs~HC~~C~~CV~r---~DHHC~Wi~nCI 185 (310)
..-+|.+|+.+.++ ...||..||-|-.+ -=-||.=-|.|+
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 34567888776433 35666666666654 112455444453
No 18
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.68 E-value=18 Score=25.89 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.1
Q ss_pred cccccccCeEEec
Q 021625 161 VRYCKICKAHVEG 173 (310)
Q Consensus 161 s~HC~~C~~CV~r 173 (310)
.+||..|++=+.+
T Consensus 18 ~~~C~~C~~~~~~ 30 (81)
T 2jrp_A 18 TAHCETCAKDFSL 30 (81)
T ss_dssp EEECTTTCCEEEE
T ss_pred ceECccccccCCC
Confidence 4445555554433
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=34.13 E-value=16 Score=29.12 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCcccccccCeEEec--cc-cccc
Q 021625 149 DPDNENSLSRKRVRYCKICKAHVEG--FD-HHCP 179 (310)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~CV~r--~D-HHC~ 179 (310)
.|..|++-+...-.||..||.|+.. .| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 4666666666778888888888653 34 6654
No 20
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.04 E-value=21 Score=25.03 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCCc----ccccccCeEEec
Q 021625 143 GSELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (310)
Q Consensus 143 ~~~~~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 173 (310)
.+.....|+.|...+-.|. .+|+.|++-+..
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 3344577999988666664 889999987664
No 21
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=29.71 E-value=27 Score=32.16 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCC---CCCcccccccCeEEec
Q 021625 146 LGVDPDNENSLS---RKRVRYCKICKAHVEG 173 (310)
Q Consensus 146 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~r 173 (310)
...+|..|+..- ..|-|||+.|+..+-+
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 457899998643 4688999999876655
No 22
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=26.61 E-value=17 Score=28.04 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCCCccccc--ccCeE
Q 021625 147 GVDPDNENSLSRKRVRYCK--ICKAH 170 (310)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~--~C~~C 170 (310)
..+|..|...-|+|++.|+ .||..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 4789999999999999999 48764
No 23
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=25.64 E-value=18 Score=25.30 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCC----cccccccCeEEe
Q 021625 146 LGVDPDNENSLSRKR----VRYCKICKAHVE 172 (310)
Q Consensus 146 ~~~~C~~C~~~kP~R----s~HC~~C~~CV~ 172 (310)
....|+.|...+-.| -.||+.|++=+.
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 346699998777666 369999987554
No 24
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=23.20 E-value=15 Score=22.70 Aligned_cols=12 Identities=8% Similarity=-0.260 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCC
Q 021625 145 ELGVDPDNENSL 156 (310)
Q Consensus 145 ~~~~~C~~C~~~ 156 (310)
....||..|...
T Consensus 18 ~eRpYCd~CEvF 29 (42)
T 2pzo_E 18 EERPYCEICEMF 29 (42)
T ss_dssp ---CEETTTTEE
T ss_pred cCCccccccccc
Confidence 445677777653
No 25
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=23.13 E-value=22 Score=20.76 Aligned_cols=9 Identities=33% Similarity=1.003 Sum_probs=6.9
Q ss_pred cccccccCe
Q 021625 161 VRYCKICKA 169 (310)
Q Consensus 161 s~HC~~C~~ 169 (310)
-.||+.|++
T Consensus 9 kqhcrfckk 17 (37)
T 2elu_A 9 KQHCRFCKK 17 (37)
T ss_dssp CCEETTTTE
T ss_pred HHHHHHHHH
Confidence 358999886
No 26
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.86 E-value=35 Score=19.98 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCcccccccC
Q 021625 150 PDNENSLSRKRVRYCKICK 168 (310)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~ 168 (310)
|+.|-..-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 7777777777777777775
No 27
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.50 E-value=99 Score=21.00 Aligned_cols=39 Identities=13% Similarity=-0.027 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCcccccccCe--E---Eecccccccccccccc
Q 021625 147 GVDPDNENSLSRKRVRYCKICKA--H---VEGFDHHCPAFGNCIG 186 (310)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~--C---V~r~DHHC~Wi~nCIG 186 (310)
.+.|..|+..-..-.-.|+ |+. | -.--||.|++-..=.|
T Consensus 15 ~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred CCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHH
Confidence 4679999885444356774 665 2 2233888987554444
No 28
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.49 E-value=18 Score=33.59 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCCCCCCC--CCCCcccccccCe
Q 021625 148 VDPDNENSL--SRKRVRYCKICKA 169 (310)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~ 169 (310)
..|..|... --.|-|||+.||+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~ 399 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGK 399 (434)
T ss_dssp ------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcC
Confidence 347777642 2246678888776
No 29
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.18 E-value=37 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCCCCCCCCC--CCCcccccccCeEEeccccccc
Q 021625 148 VDPDNENSLS--RKRVRYCKICKAHVEGFDHHCP 179 (310)
Q Consensus 148 ~~C~~C~~~k--P~Rs~HC~~C~~CV~r~DHHC~ 179 (310)
..|+.|+..- -.+..||..|++-+.+ --+||
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~-~a~CP 65 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEM-KALCP 65 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEE-EEECT
T ss_pred ccCccCCCcceecCCEEECccccchhhc-cccCc
Confidence 7899998642 3456789999986543 33454
No 30
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.24 E-value=38 Score=23.48 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCCCCCCCC---CCCCcccccccCeEEe
Q 021625 148 VDPDNENSL---SRKRVRYCKICKAHVE 172 (310)
Q Consensus 148 ~~C~~C~~~---kP~Rs~HC~~C~~CV~ 172 (310)
-.|..|... ++..+-||+.|+.-|+
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 458888754 4556778999987443
No 31
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.10 E-value=89 Score=22.49 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCCCC-CcccccccCe--EE---ecccccccccccccc
Q 021625 146 LGVDPDNENSLSRK-RVRYCKICKA--HV---EGFDHHCPAFGNCIG 186 (310)
Q Consensus 146 ~~~~C~~C~~~kP~-Rs~HC~~C~~--CV---~r~DHHC~Wi~nCIG 186 (310)
..+.|..|+..-.. ..-+|+ |+. |- ..-||.|++-..=.|
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHH
Confidence 34679999986665 367786 664 33 334899987544333
Done!