BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021626
         (310 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8PHC8|CYSI_XANAC Sulfite reductase [NADPH] hemoprotein beta-component OS=Xanthomonas
           axonopodis pv. citri (strain 306) GN=cysI PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 162 FPSRRKKKSSAFCYADDSTANGRRACRTSNRG---MSPARETESDDDCDRSPWGSGDSTE 218
           F +R  +K + F Y  D           + R    + PA+    D + DR  W  G+   
Sbjct: 284 FGNRAVRKRARFKYTIDDHGLDTIVAEIARRAGFALQPAQPFAFDHNGDRYGWVEGEDGL 343

Query: 219 EWRRTPTAAVPAVRRTRTTAHVKNVSGLAFCLSPLVRASPNRHWNQKGGLQSE------L 272
            W  T +     +  T T AH+  +  +A       R +PN++    G L SE      L
Sbjct: 344 -WHLTLSLPAGRIADTDTAAHLSGLRAIAQLNVGEFRMTPNQNLVIAGVLASERARVDAL 402

Query: 273 V--YSGEVRNTTKPHLSTAASFC----------ANRSRKLADFG 304
           V  Y  +  N +   L+  A  C          A   R L DFG
Sbjct: 403 VAHYGLDAGNQSATALARGAMACVALPTCGLAMAEAERYLPDFG 446


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.124    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,012,404
Number of Sequences: 539616
Number of extensions: 4623125
Number of successful extensions: 17702
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 16510
Number of HSP's gapped (non-prelim): 667
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)