Query 021626
Match_columns 310
No_of_seqs 63 out of 65
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 04:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05340 DUF740: Protein of un 99.2 1.9E-11 4.1E-16 124.4 4.0 101 2-123 14-119 (603)
2 PTZ00074 60S ribosomal protein 26.7 50 0.0011 29.2 2.3 24 3-27 68-91 (135)
3 COG3809 Uncharacterized protei 25.7 32 0.00069 28.6 0.8 17 106-122 71-87 (88)
4 PRK04059 rpl34e 50S ribosomal 21.3 87 0.0019 25.9 2.5 24 3-27 61-84 (88)
5 PF15354 KAAG1: Kidney-associa 19.8 1.8E+02 0.0039 23.9 4.0 62 7-84 7-68 (84)
6 PF10186 Atg14: UV radiation r 13.5 1.6E+02 0.0036 26.4 2.6 23 12-34 9-31 (302)
7 PF01697 Glyco_transf_92: Glyc 11.8 1E+02 0.0023 27.4 0.9 14 245-258 2-15 (285)
8 COG1111 MPH1 ERCC4-like helica 11.2 83 0.0018 33.5 0.0 16 84-99 104-119 (542)
9 COG2126 RPL37A Ribosomal prote 11.2 92 0.002 24.5 0.3 18 2-21 21-38 (61)
10 KOG0323 TFIIF-interacting CTD 10.9 1.2E+02 0.0025 32.9 1.0 20 1-23 87-106 (635)
No 1
>PF05340 DUF740: Protein of unknown function (DUF740); InterPro: IPR008004 This family consists of several uncharacterised plant chloroplastic proteins of unknown function.
Probab=99.15 E-value=1.9e-11 Score=124.37 Aligned_cols=101 Identities=34% Similarity=0.455 Sum_probs=70.4
Q ss_pred cccCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhhcccCCCccccccCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 021626 2 RCKRHSSDHSSSVGVCASCLRERLSALVAAQAQAQSQLNQHHTGVTAEDRRKQPQDPPPPLLFPRSVSPYVSRRKSDDTT 81 (310)
Q Consensus 2 rCk~HP~~~~~~~GVCa~CLreRL~~L~a~q~~a~~~~~s~~~~~~~~~r~~~~~~ppp~~~FPRSVSPYVsrRKSD~~~ 81 (310)
+|++||++ ...||||+||||||+.|.+.++...+.. + ........+|.+|++.+ ++..+
T Consensus 14 ~C~rHP~~--~~~GvC~~CLrERL~~l~~~sss~~a~~-~-------------~Sssa~~slf~~sss~~-----s~~~g 72 (603)
T PF05340_consen 14 RCKRHPSQ--RFTGVCPSCLRERLSGLSASSSSSSAPP-S-------------SSSSASSSLFSRSSSAG-----SSSSG 72 (603)
T ss_pred cCcCCCCC--CCCeEChHHHHHHHHhcccccccccccc-c-------------cccccccccccCCcccC-----CCCCC
Confidence 69999999 5999999999999999988843222000 0 01123345899999999 55555
Q ss_pred CCCCCCCcceecCCCCCcccCC--Ccchhhhcc---cchhHHHHhhc
Q 021626 82 ASTWAYPSRFYSTPQVRPTSTA--GNLAVHKRN---RKFSLLSNLFS 123 (310)
Q Consensus 82 ~~~~~~~~lFf~TPQVgPay~~--gg~~~~kr~---~kfS~ls~LF~ 123 (310)
...+.|+|+++++.+|+.++.. +.++-.+|- ...+-|-+||-
T Consensus 73 ~G~~~p~LRR~KS~S~~r~~~~~~~~~ePrRrSCdVr~rsTLwsLF~ 119 (603)
T PF05340_consen 73 NGSSFPSLRRCKSFSVGRNNAGFSGSDEPRRRSCDVRSRSTLWSLFH 119 (603)
T ss_pred ccccchhhhcccccccCcccccccCccCCCCCCccccccchHHHhhc
Confidence 5566899999999999875432 444422222 24667788997
No 2
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=26.74 E-value=50 Score=29.24 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=17.6
Q ss_pred ccCCCCCCCCCcccchhhHHHHHHH
Q 021626 3 CKRHSSDHSSSVGVCASCLRERLSA 27 (310)
Q Consensus 3 Ck~HP~~~~~~~GVCa~CLreRL~~ 27 (310)
.++|+.-- -++-.|+.|++||+..
T Consensus 68 ~~KtvsRa-YGG~lC~~CVr~rIir 91 (135)
T PTZ00074 68 RERTVSRA-YGGVLCHKCVRDRIVR 91 (135)
T ss_pred cCCCccCC-CccchhHHHHHHHHHH
Confidence 34566553 5667899999999875
No 3
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.73 E-value=32 Score=28.60 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=14.5
Q ss_pred chhhhcccchhHHHHhh
Q 021626 106 LAVHKRNRKFSLLSNLF 122 (310)
Q Consensus 106 ~~~~kr~~kfS~ls~LF 122 (310)
.+|+|+++||++|-.||
T Consensus 71 ~~Y~krKKK~~~l~elF 87 (88)
T COG3809 71 EEYKKRKKKFSFLEELF 87 (88)
T ss_pred hhhhhhhhHHHHHHHhc
Confidence 34788888999999999
No 4
>PRK04059 rpl34e 50S ribosomal protein L34e; Validated
Probab=21.32 E-value=87 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=17.3
Q ss_pred ccCCCCCCCCCcccchhhHHHHHHH
Q 021626 3 CKRHSSDHSSSVGVCASCLRERLSA 27 (310)
Q Consensus 3 Ck~HP~~~~~~~GVCa~CLreRL~~ 27 (310)
.+++++-- -++-.|+.|++||+..
T Consensus 61 ~~K~vsRa-YGG~lc~~cvr~rI~~ 84 (88)
T PRK04059 61 TEKRPERP-YGGYLCPKCLKRLIKA 84 (88)
T ss_pred ccCCcccC-cCceecHHHHHHHHHH
Confidence 35566553 5566799999999854
No 5
>PF15354 KAAG1: Kidney-associated antigen 1
Probab=19.78 E-value=1.8e+02 Score=23.86 Aligned_cols=62 Identities=27% Similarity=0.445 Sum_probs=41.9
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhhcccCCCccccccCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q 021626 7 SSDHSSSVGVCASCLRERLSALVAAQAQAQSQLNQHHTGVTAEDRRKQPQDPPPPLLFPRSVSPYVSRRKSDDTTAST 84 (310)
Q Consensus 7 P~~~~~~~GVCa~CLreRL~~L~a~q~~a~~~~~s~~~~~~~~~r~~~~~~ppp~~~FPRSVSPYVsrRKSD~~~~~~ 84 (310)
|.+....|-|--+-|-++|-+.+---+.+. - -|.-+||.|.-+|-+-|-.++|---+.++.+
T Consensus 7 preegvpvavhqhalh~~lrqvagpga~aa----h------------lpr~~pp~laa~r~~ap~l~q~~~rt~gags 68 (84)
T PF15354_consen 7 PREEGVPVAVHQHALHDRLRQVAGPGAGAA----H------------LPRGTPPRLAAPRGEAPPLSQRPHRTQGAGS 68 (84)
T ss_pred ccccCcchhhhHHHHHHHHHHhcCCcchhh----c------------CCCCCCcccccccccCCCCCCCcccccCCCC
Confidence 455445667778889999977765433332 1 2556778889999999998887665544433
No 6
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=13.51 E-value=1.6e+02 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=17.6
Q ss_pred CCcccchhhHHHHHHHHHHHHHH
Q 021626 12 SSVGVCASCLRERLSALVAAQAQ 34 (310)
Q Consensus 12 ~~~GVCa~CLreRL~~L~a~q~~ 34 (310)
...-.|+.|+++||..+-.....
T Consensus 9 ~~~~~C~~C~~~~L~~~~~~l~~ 31 (302)
T PF10186_consen 9 RRRFYCANCVNNRLLELRSELQQ 31 (302)
T ss_pred CCCeECHHHHHHHHHHHHHHHHH
Confidence 46678999999999887554443
No 7
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=11.76 E-value=1e+02 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.2
Q ss_pred eeEEeeCcccccCC
Q 021626 245 GLAFCLSPLVRASP 258 (310)
Q Consensus 245 G~AfCLSPLVR~Sp 258 (310)
.|+||++||.-.-+
T Consensus 2 ~~~vCv~pl~~~~~ 15 (285)
T PF01697_consen 2 DFVVCVSPLFGNED 15 (285)
T ss_pred cEEEEccchhcccc
Confidence 47888888877554
No 8
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=11.21 E-value=83 Score=33.50 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=11.7
Q ss_pred CCCCCcceecCCCCCc
Q 021626 84 TWAYPSRFYSTPQVRP 99 (310)
Q Consensus 84 ~~~~~~lFf~TPQVgP 99 (310)
-|....+||.||||--
T Consensus 104 ~w~~~kVfvaTPQvve 119 (542)
T COG1111 104 LWAKKKVFVATPQVVE 119 (542)
T ss_pred HHhhCCEEEeccHHHH
Confidence 4566778888888765
No 9
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=11.17 E-value=92 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.2
Q ss_pred cccCCCCCCCCCcccchhhH
Q 021626 2 RCKRHSSDHSSSVGVCASCL 21 (310)
Q Consensus 2 rCk~HP~~~~~~~GVCa~CL 21 (310)
||-+|-|+ ...++|++|-
T Consensus 21 RCGr~syh--v~k~~CaaCG 38 (61)
T COG2126 21 RCGRRSYH--VRKKYCAACG 38 (61)
T ss_pred hccchhee--eccceecccC
Confidence 67888888 6889999995
No 10
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=10.93 E-value=1.2e+02 Score=32.92 Aligned_cols=20 Identities=35% Similarity=0.683 Sum_probs=16.4
Q ss_pred CcccCCCCCCCCCcccchhhHHH
Q 021626 1 MRCKRHSSDHSSSVGVCASCLRE 23 (310)
Q Consensus 1 MrCk~HP~~~~~~~GVCa~CLre 23 (310)
|.|..|+.- -.|+|+.|+.+
T Consensus 87 ~~~C~H~~v---~~GlC~~Cg~~ 106 (635)
T KOG0323|consen 87 TSCCEHFTV---FGGLCASCGKD 106 (635)
T ss_pred cCCccceee---cccHHHHHHHH
Confidence 467888876 78999999975
Done!