Query 021626
Match_columns 310
No_of_seqs 63 out of 65
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 06:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_g 60S ribosomal protein L 33.2 24 0.00082 29.5 2.6 24 3-27 68-91 (121)
2 3iz5_i 60S ribosomal protein L 31.1 26 0.00088 29.2 2.4 25 3-28 70-94 (119)
3 4a18_L RPL34; ribosome, eukary 21.8 31 0.001 29.0 1.2 22 5-27 72-93 (123)
4 3j21_d 50S ribosomal protein L 17.4 61 0.0021 25.6 2.0 24 4-29 61-84 (89)
5 4gns_A Chitin biosynthesis pro 9.2 89 0.003 28.5 0.7 13 242-254 161-173 (290)
6 3zxa_C Capsid protein; ssRNA v 8.0 1E+02 0.0035 29.6 0.6 15 292-306 196-212 (347)
7 2jl6_1 50S ribosomal protein L 7.2 82 0.0028 25.0 -0.4 15 13-27 59-75 (89)
8 2d8u_A Ubiquitin ligase TRIM63 6.2 2.9E+02 0.0098 18.7 2.1 21 1-21 9-35 (64)
9 3hmm_A TGF-beta receptor type- 5.8 1.4E+02 0.0049 26.0 0.4 9 297-305 146-154 (303)
10 3ci0_I Pseudopilin GSPI; gener 5.7 3.2E+02 0.011 20.1 2.3 17 20-36 8-24 (89)
No 1
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=33.21 E-value=24 Score=29.50 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.1
Q ss_pred ccCCCCCCCCCcccchhhHHHHHHH
Q 021626 3 CKRHSSDHSSSVGVCASCLRERLSA 27 (310)
Q Consensus 3 Ck~HP~~~~~~~GVCa~CLreRL~~ 27 (310)
.+++++-- -++-.|+.|++||++.
T Consensus 68 ~~KtvsRa-YGG~lC~~CVr~RI~r 91 (121)
T 3u5e_g 68 THKTVSRA-YGGSRCANCVKERIIR 91 (121)
T ss_dssp GGSCCSST-TTTTSCSHHHHHHHHH
T ss_pred CCCCcccC-CcccchHHHHHHHHHH
Confidence 45666663 5667899999999875
No 2
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=31.09 E-value=26 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=17.9
Q ss_pred ccCCCCCCCCCcccchhhHHHHHHHH
Q 021626 3 CKRHSSDHSSSVGVCASCLRERLSAL 28 (310)
Q Consensus 3 Ck~HP~~~~~~~GVCa~CLreRL~~L 28 (310)
.+++++-- -++-.|+.|++||++.-
T Consensus 70 ~~KtvsRa-YGG~lC~~CVr~rI~rA 94 (119)
T 3iz5_i 70 NRRTVNRP-YGGVLSGPAVRERIIRA 94 (119)
T ss_dssp CCCCCBCC-SCCCCHHHHHHHHHHHH
T ss_pred cCCCcccC-CCccchHHHHHHHHHHH
Confidence 45566653 45568999999999763
No 3
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=21.77 E-value=31 Score=28.99 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=16.0
Q ss_pred CCCCCCCCCcccchhhHHHHHHH
Q 021626 5 RHSSDHSSSVGVCASCLRERLSA 27 (310)
Q Consensus 5 ~HP~~~~~~~GVCa~CLreRL~~ 27 (310)
++++-- -++-.|+.|++||++.
T Consensus 72 KtvsRa-YGG~lC~~CVr~RI~r 93 (123)
T 4a18_L 72 KTVSRV-YGGELCHTCVRSRIIR 93 (123)
T ss_dssp HCCSST-TSSSCCHHHHHHHHHH
T ss_pred CCcccC-CCccchHHHHHHHHHH
Confidence 455542 4556899999999875
No 4
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=17.36 E-value=61 Score=25.64 Aligned_cols=24 Identities=17% Similarity=0.547 Sum_probs=17.1
Q ss_pred cCCCCCCCCCcccchhhHHHHHHHHH
Q 021626 4 KRHSSDHSSSVGVCASCLRERLSALV 29 (310)
Q Consensus 4 k~HP~~~~~~~GVCa~CLreRL~~L~ 29 (310)
++|++-- -+ -.|+.|++||+..-+
T Consensus 61 ~KtvsRa-YG-~lC~~Cvr~rI~~~~ 84 (89)
T 3j21_d 61 KKRPERP-MP-HLCPRCMRKVMKEQI 84 (89)
T ss_dssp HHCCSSS-CT-TSCHHHHHHHHHHHH
T ss_pred CCCcCCC-cc-cchHHHHHHHHHHHH
Confidence 3455553 45 799999999997544
No 5
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=9.16 E-value=89 Score=28.51 Aligned_cols=13 Identities=46% Similarity=1.043 Sum_probs=11.0
Q ss_pred CcceeEEeeCccc
Q 021626 242 NVSGLAFCLSPLV 254 (310)
Q Consensus 242 ~~SG~AfCLSPLV 254 (310)
.+||+.|||-||-
T Consensus 161 dmsgitvclgpld 173 (290)
T 4gns_A 161 DMSGITVCLGPLD 173 (290)
T ss_dssp CCTTCCEEECCCC
T ss_pred cccCceEEecCCC
Confidence 3699999999983
No 6
>3zxa_C Capsid protein; ssRNA virus, icosahedral virus; 3.20A {Turnip crinkle virus} PDB: 3zx9_A 3zx8_A
Probab=8.00 E-value=1e+02 Score=29.61 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=11.6
Q ss_pred ccccc--cccccccCCC
Q 021626 292 FCANR--SRKLADFGRV 306 (310)
Q Consensus 292 fc~nR--SRKLAD~GR~ 306 (310)
||+.- .+||.|||||
T Consensus 196 F~~Ds~~D~KLvD~G~l 212 (347)
T 3zxa_C 196 FVADGISDPKLVDFGKL 212 (347)
T ss_dssp CCCSSCSCTTTSSSCCB
T ss_pred cccCCCCcccccccceE
Confidence 55443 6999999997
No 7
>2jl6_1 50S ribosomal protein L28, 50S ribosomal protein L25; methylation, translation, paromomycin, tRNA-binding, tRNA, zinc, mRNA, ribosome, repressor, RNA-binding; 3.45A {Thermus thermophilus} PDB: 2jl8_1
Probab=7.18 E-value=82 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=11.4
Q ss_pred CcccchhhHH--HHHHH
Q 021626 13 SVGVCASCLR--ERLSA 27 (310)
Q Consensus 13 ~~GVCa~CLr--eRL~~ 27 (310)
.+-||+.||| +++-.
T Consensus 59 rl~Vstk~LRtI~k~g~ 75 (89)
T 2jl6_1 59 TFRVAASHIPKVYELVE 75 (89)
T ss_dssp CBCCBGGGHHHHHHHHS
T ss_pred EEEEEChhheEccccch
Confidence 4679999999 66643
No 8
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=6.22 E-value=2.9e+02 Score=18.71 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=14.2
Q ss_pred CcccCCCCCC------CCCcccchhhH
Q 021626 1 MRCKRHSSDH------SSSVGVCASCL 21 (310)
Q Consensus 1 MrCk~HP~~~------~~~~GVCa~CL 21 (310)
+.|..|+.+. +...-||..|.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~ 35 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCK 35 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHH
T ss_pred CcCcCcCCCccceEcCcCCceeCcccc
Confidence 3689997542 24567888886
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=5.77 E-value=1.4e+02 Score=26.01 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=6.4
Q ss_pred cccccccCC
Q 021626 297 SRKLADFGR 305 (310)
Q Consensus 297 SRKLAD~GR 305 (310)
.-||+|||-
T Consensus 146 ~~Ki~DFGl 154 (303)
T 3hmm_A 146 TCCIADLGL 154 (303)
T ss_dssp CEEECCCTT
T ss_pred CEEEEeCCC
Confidence 358888883
No 10
>3ci0_I Pseudopilin GSPI; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: d.24.1.7
Probab=5.73 E-value=3.2e+02 Score=20.07 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 021626 20 CLRERLSALVAAQAQAQ 36 (310)
Q Consensus 20 CLreRL~~L~a~q~~a~ 36 (310)
=|+||++..+.|+++..
T Consensus 8 ~L~~r~lA~wvA~N~la 24 (89)
T 3ci0_I 8 VLEEKTVAGWVAENQTA 24 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48999999999999754
Done!