Query 021626
Match_columns 310
No_of_seqs 63 out of 65
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 06:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 9.0 75 0.0055 20.1 1.9 20 2-21 3-28 (51)
2 d1kzyc1 c.15.1.4 (C:1714-1866) 7.5 72 0.0052 24.6 1.4 13 241-253 13-26 (153)
3 d1vqo11 g.41.8.2 (1:1-56) Ribo 6.7 39 0.0028 23.3 -0.5 18 2-21 21-38 (56)
4 d2dq5a1 g.43.1.1 (A:168-214) M 6.5 68 0.005 20.1 0.7 21 1-21 6-32 (47)
5 d2djaa1 g.43.1.1 (A:8-78) Midl 5.9 1.1E+02 0.0079 20.0 1.5 21 1-21 12-38 (71)
6 d1axib2 b.1.2.1 (B:131-236) Gr 5.1 1.7E+02 0.012 19.6 2.1 14 83-97 93-106 (106)
7 d1ywna1 d.144.1.7 (A:818-1166) 4.6 83 0.006 24.9 0.2 9 297-305 172-180 (299)
8 d1vega_ a.5.2.1 (A:) NEDD8 ult 4.5 1.4E+02 0.01 21.8 1.3 13 265-277 68-80 (83)
9 d2tbva_ b.121.4.7 (A:) Tombusv 4.5 1E+02 0.0074 26.7 0.7 10 297-306 130-139 (287)
10 d1opja_ d.144.1.7 (A:) Abelson 4.4 94 0.0069 24.9 0.4 6 299-304 155-160 (287)
No 1
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.99 E-value=75 Score=20.10 Aligned_cols=20 Identities=30% Similarity=0.793 Sum_probs=14.1
Q ss_pred cccCCCCCC------CCCcccchhhH
Q 021626 2 RCKRHSSDH------SSSVGVCASCL 21 (310)
Q Consensus 2 rCk~HP~~~------~~~~GVCa~CL 21 (310)
.|..||.+. +-.+-||..|+
T Consensus 3 ~C~~H~~e~l~~yC~~c~~~iC~~C~ 28 (51)
T d2d8ua1 3 MCKEHEDEKINIYCLTCEVPTCSMCK 28 (51)
T ss_dssp CCSSCTTCCCCSEESSSCCCCCSHHH
T ss_pred CCcccCcCcceEEcCCCCceECcccc
Confidence 389998652 34567888885
No 2
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.46 E-value=72 Score=24.55 Aligned_cols=13 Identities=38% Similarity=0.508 Sum_probs=10.3
Q ss_pred CCc-ceeEEeeCcc
Q 021626 241 KNV-SGLAFCLSPL 253 (310)
Q Consensus 241 ~~~-SG~AfCLSPL 253 (310)
.++ +||+||||..
T Consensus 13 ~~lF~g~~F~lT~~ 26 (153)
T d1kzyc1 13 KTLFLGYAFLLTMA 26 (153)
T ss_dssp TTTTTTEEEEECCC
T ss_pred hhhhCCCEEEEecC
Confidence 445 9999999954
No 3
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.67 E-value=39 Score=23.34 Aligned_cols=18 Identities=39% Similarity=0.757 Sum_probs=13.6
Q ss_pred cccCCCCCCCCCcccchhhH
Q 021626 2 RCKRHSSDHSSSVGVCASCL 21 (310)
Q Consensus 2 rCk~HP~~~~~~~GVCa~CL 21 (310)
||-++-++ ....+||+|-
T Consensus 21 RCGr~syH--~qK~~CasCG 38 (56)
T d1vqo11 21 RCGEKSYH--TKKKVCSSCG 38 (56)
T ss_dssp TTCSEEEE--TTTTEETTTC
T ss_pred ccCchhhh--hccccccccC
Confidence 57777777 4778899884
No 4
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.50 E-value=68 Score=20.08 Aligned_cols=21 Identities=24% Similarity=0.664 Sum_probs=14.3
Q ss_pred CcccCCCCCC------CCCcccchhhH
Q 021626 1 MRCKRHSSDH------SSSVGVCASCL 21 (310)
Q Consensus 1 MrCk~HP~~~------~~~~GVCa~CL 21 (310)
|.|..||.+. +-..-||..|.
T Consensus 6 ~~C~~H~~e~l~~yC~~C~~~iC~~C~ 32 (47)
T d2dq5a1 6 LMCLEHEDEKVNMYCVTDDQLICALCK 32 (47)
T ss_dssp CBCSSCTTSBEEEEETTTTEEEEHHHH
T ss_pred ccchhhCCCcceEEcCCCCccCCccCc
Confidence 5699999763 34456777774
No 5
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.92 E-value=1.1e+02 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=13.0
Q ss_pred CcccCCCCCC------CCCcccchhhH
Q 021626 1 MRCKRHSSDH------SSSVGVCASCL 21 (310)
Q Consensus 1 MrCk~HP~~~------~~~~GVCa~CL 21 (310)
+.|..|+.+. +-.+-||..|.
T Consensus 12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~ 38 (71)
T d2djaa1 12 ITCLDHENEKVNMYCVSDDQLICALCK 38 (71)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHH
T ss_pred CcCcccCCccceeEcCCCCceeccccc
Confidence 3599998662 23445666664
No 6
>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=1.7e+02 Score=19.60 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=10.9
Q ss_pred CCCCCCcceecCCCC
Q 021626 83 STWAYPSRFYSTPQV 97 (310)
Q Consensus 83 ~~~~~~~lFf~TPQV 97 (310)
+.| .+-+|..||||
T Consensus 93 s~w-S~~v~v~~P~~ 106 (106)
T d1axib2 93 GEF-SEVLYVTLPQM 106 (106)
T ss_dssp CCC-CCCEEECCCCC
T ss_pred CCC-CCCEEEECCCC
Confidence 444 57799999997
No 7
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.60 E-value=83 Score=24.89 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=4.6
Q ss_pred cccccccCC
Q 021626 297 SRKLADFGR 305 (310)
Q Consensus 297 SRKLAD~GR 305 (310)
--||+|||-
T Consensus 172 ~~Kl~DFGl 180 (299)
T d1ywna1 172 VVKICDFGL 180 (299)
T ss_dssp CEEECC---
T ss_pred cEEEccCcc
Confidence 468888884
No 8
>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.46 E-value=1.4e+02 Score=21.78 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=10.1
Q ss_pred CCCCCCCCccccc
Q 021626 265 KGGLQSELVYSGE 277 (310)
Q Consensus 265 r~g~ppd~g~sge 277 (310)
-|.+||||-+|++
T Consensus 68 gG~LP~dLq~s~~ 80 (83)
T d1vega_ 68 GGSLPPDLQFSGP 80 (83)
T ss_dssp TSSCCTTSSSSSC
T ss_pred CCcCCcccccCCC
Confidence 3568999888876
No 9
>d2tbva_ b.121.4.7 (A:) Tombusvirus coat protein {TBSV (Tomato bushy stunt virus) [TaxId: 12145]}
Probab=4.46 E-value=1e+02 Score=26.66 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=8.7
Q ss_pred cccccccCCC
Q 021626 297 SRKLADFGRV 306 (310)
Q Consensus 297 SRKLAD~GR~ 306 (310)
-+||.|+|+|
T Consensus 130 D~KLvD~G~l 139 (287)
T d2tbva_ 130 DQKLIDLGQL 139 (287)
T ss_dssp CTTTTCCCCC
T ss_pred chheeccceE
Confidence 4899999997
No 10
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.43 E-value=94 Score=24.87 Aligned_cols=6 Identities=83% Similarity=1.425 Sum_probs=0.0
Q ss_pred cccccC
Q 021626 299 KLADFG 304 (310)
Q Consensus 299 KLAD~G 304 (310)
||+|||
T Consensus 155 Kl~DFG 160 (287)
T d1opja_ 155 KVADFG 160 (287)
T ss_dssp EECCCC
T ss_pred EEcccc
Done!