BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021627
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|B Chain B, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|C Chain C, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|D Chain D, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
Length = 252
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 41/188 (21%)
Query: 43 KSGYKF-PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTR 101
+S Y F P+ V+ HRGS ENT+ S + A + + ++E DV ++
Sbjct: 3 QSAYSFLPQ--VIAHRGSSGQA-----------PENTLASLHLAGQQGIKWVEIDVXLSG 49
Query: 102 DGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161
DG PVIFHD+++ +G+ + + LAE K D ++
Sbjct: 50 DGIPVIFHDDYLSRTTDGDGL---IYKTPLAEL------------------KQLDAGSWK 88
Query: 162 WKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG 220
+ + + TL EA E + Q G N+ELK + L EEE A +LK + Q
Sbjct: 89 GQEYQQETIPTLLEAIEVISQYGXGLNLELKPCEGL---EEETIAASVEVLKQHW--PQD 143
Query: 221 RPIMFSSF 228
P++FSSF
Sbjct: 144 LPLLFSSF 151
>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
pdb|2PZ0|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
Length = 252
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFH 109
K +V+ HRG K++ ENTI +F A D IE DVQ+T+DG V+ H
Sbjct: 11 KTLVIAHRGDS-----------KNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIH 59
Query: 110 DNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTP 169
D + G E V D TL E ++K G F K +
Sbjct: 60 DETVDRTTNG---EGFVKDFTLEE-----------------IKKLDAGIKFGEKFAGER- 98
Query: 170 LCTLQEAFEKV-DQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSF 228
+ TL E FE + D+ N+E+K ++Y E E ++K + E+ ++ SSF
Sbjct: 99 IPTLYEVFELIGDKDFLVNIEIK-SGIVLYPGIE-----EKLIKAIKEYNFEERVIISSF 152
Query: 229 QPDAALLIRKLQSTYPVFFLTNGG 252
+ ++K+ + L G
Sbjct: 153 NHYSLRDVKKMAPHLKIGLLYQCG 176
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 58/191 (30%)
Query: 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN 111
+V+GHRG L ENT+ +F A + +E DV++++DG V+ HD
Sbjct: 14 IVLGHRGYSAKYL-----------ENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDE 62
Query: 112 FIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLC 171
+ KR+ + + K +D + E K D +
Sbjct: 63 DL----------KRLFGLDV---------------------KIRDATVSELKELTDGKIT 91
Query: 172 TLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPD 231
TL+E FE V DD+++ E + A +A+L++ + + ++FSSF D
Sbjct: 92 TLKEVFENVS-----------DDKIINIEIKEREAADAVLEI---SKKRKNLIFSSFDLD 137
Query: 232 AALLIRKLQST 242
LL K + T
Sbjct: 138 --LLDEKFKGT 146
>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Np_812074.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.35 A Resolution
Length = 278
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 47 KFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPV 106
K K +V+ HRG+ +S EN+ + ++A +D +E D+Q T+DG +
Sbjct: 14 KSNKVLVVAHRGN-----------WRSAPENSTAAIDSAIAXKVDIVEIDIQKTKDGQLI 62
Query: 107 IFHDNFI--FTKDEGEIIEKRVTDI 129
+ HDN + T +GEI + DI
Sbjct: 63 LXHDNTLDRTTTGKGEIKNWTLADI 87
>pdb|1V8E|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Thermus Thermophilus Hb8
pdb|1VD6|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase Complexed With Glycerol
Length = 224
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 54 MGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHD 110
+GHRG+ + KENT+ SF A LD +E DV TRDG + HD
Sbjct: 11 LGHRGAPLKA-----------KENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHD 56
>pdb|2OTD|A Chain A, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|B Chain B, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|C Chain C, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
pdb|2OTD|D Chain D, The Crystal Structure Of The Glycerophosphodiester
Phosphodiesterase From Shigella Flexneri 2a
Length = 247
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 44 SGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDG 103
S + +P+ V HRG G K ENT+ + + A++ IEFD ++++DG
Sbjct: 2 SNWPYPRIVA--HRGGG-----------KLAPENTLAAIDVGAKYGHKXIEFDAKLSKDG 48
Query: 104 CPVIFHDN 111
+ HD+
Sbjct: 49 EIFLLHDD 56
>pdb|2OOG|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|B Chain B, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|C Chain C, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|D Chain D, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|E Chain E, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2OOG|F Chain F, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|A Chain A, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|B Chain B, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|C Chain C, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|D Chain D, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|E Chain E, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|F Chain F, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|G Chain G, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
pdb|2P76|H Chain H, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase From Staphylococcus Aureus
Length = 287
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 46/223 (20%)
Query: 50 KFVVMGHRG-SGM---NMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCP 105
+F + HRG SG + Q+ D+ +K + +IE D+Q T+DG
Sbjct: 23 RFTTIAHRGASGYAPEHTFQAYDKSHNELKAS--------------YIEIDLQRTKDGHL 68
Query: 106 VIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVE 165
V HD + G +V D TL E L++ G F K
Sbjct: 69 VAMHDETVNRTTNG---HGKVEDYTLDE-----------------LKQLDAGSWFNKKYP 108
Query: 166 -------KDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHA 218
K+ + TL E E+ + + +E K D EE+L +L+ +
Sbjct: 109 KYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKL 168
Query: 219 QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGA-QTCTDVR 260
+ +M SF ++ I + P+ L + G Q D R
Sbjct: 169 KNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQR 211
>pdb|3L12|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3L12|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Yp_165505.1) From Silicibacter
Pomeroyi Dss-3 At 1.60 A Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112
V+GHRG+ ENT+ F + +EFDV T DG PV+ H++
Sbjct: 20 VIGHRGA-----------RGVXPENTLEGFAFTLAAGVRALEFDVVXTADGVPVVTHNHH 68
Query: 113 I---FTKD-EGEII---EKRVTDITLAEF 134
+ T+D +G + E++V + T AE
Sbjct: 69 LANAXTRDGQGHWLTGAERQVAEXTYAEI 97
>pdb|2O55|A Chain A, Crystal Structure Of A Putative Glycerophosphodiester
Phosphodiesterase From Galdieria Sulphuraria
Length = 258
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFH--- 109
++GHRG G L ENT+ SF + +IE D++V + G V+FH
Sbjct: 9 IVGHRGVGKEGLAP---------ENTLRSFVLCXERNIPYIETDLRVCKTGEIVLFHGTP 59
Query: 110 -DNFIFTKDEGEIIEKRVTDITLAEF 134
F KD R+ D++L E
Sbjct: 60 EGTIPFYKDG----TSRIGDLSLEEL 81
>pdb|3KS5|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 2.05 A Resolution
pdb|3KS5|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 2.05 A Resolution
pdb|3KS6|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|B Chain B, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|C Chain C, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
pdb|3KS6|D Chain D, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (17743486) From Agrobacterium
Tumefaciens Str. C58 (Dupont) At 1.80 A Resolution
Length = 250
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 60 GMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI--FTKD 117
G + S ++T F A A L+ +EFD+ T DG V+ HD + T
Sbjct: 1 GXTRIASHRGGTLEFGDSTPHGFTATAAXALEEVEFDLHPTADGAIVVHHDPTLDATTDX 60
Query: 118 EGEIIEKRVTDITLAEFLSYGPQNDPENV 146
G I++ + + A + YG + P +
Sbjct: 61 TGAIVDXTLAKVKTAT-IRYGAGSHPXTL 88
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
pdb|3MZ2|B Chain B, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
Length = 292
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSF-NAAARHPLDFIEFDVQVTRDGCPVIFHD 110
++ GHRG R K EN+ +F N + P F E D ++T+D V+FHD
Sbjct: 33 LISGHRGG----------RGKGYPENSXETFENTLSYTPATF-EIDPRLTKDSVIVLFHD 81
Query: 111 NFIFTKDEGEIIEKRVTDITLAEFLSY---GPQNDPENVGKPMLRK 153
+ + G +V+D T E ++ P+ + N P L +
Sbjct: 82 DTLERTSNG---TGKVSDYTWEELQNFRLKDPEGNITNYRIPTLEE 124
>pdb|3CH0|A Chain A, Crystal Structure Of Glycerophosphoryl Diester
Phosphodiesterase (Yp_677622.1) From Cytophaga
Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 272
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 51 FVVMGHRG-SGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFH 109
F + GHRG G+ + ENTI +F A + +EFD+ +++D V+ H
Sbjct: 9 FDIQGHRGCRGL------------LPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSH 56
Query: 110 DNF 112
D F
Sbjct: 57 DTF 59
>pdb|3NO3|A Chain A, Crystal Structure Of A Glycerophosphodiester
Phosphodiesterase (Bdi_0402) From Parabacteroides
Distasonis Atcc 8503 At 1.89 A Resolution
Length = 238
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112
V+ HRG + + +N+I S A+ EFDV +T D V++HDN
Sbjct: 7 VIAHRGYW---------KTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDND 57
Query: 113 I 113
I
Sbjct: 58 I 58
>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|C Chain C, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|D Chain D, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|E Chain E, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|F Chain F, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
Length = 248
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 76 ENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHD 110
ENT + + A + D+IE DV+ + DG + HD
Sbjct: 16 ENTFAAADLALQQGADYIELDVRESADGVLYVIHD 50
>pdb|3CJP|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
pdb|3CJP|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
Length = 272
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 204 THAL---EAILKVVFEHAQGRPIMFS-SFQPDAALLIRKLQSTYPVFF-LTNGGAQTCTD 258
TH + E +K++ E + I+FS S P+ A+ +R ++ + NG + D
Sbjct: 9 THVILPVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKTNSMID 68
Query: 259 VRRSSLDEAIKVCLA 273
VRR+S+ E V A
Sbjct: 69 VRRNSIKELTNVIQA 83
>pdb|1PK8|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|C Chain C, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|D Chain D, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|E Chain E, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|F Chain F, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|G Chain G, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PK8|H Chain H, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp
pdb|1PX2|A Chain A, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
pdb|1PX2|B Chain B, Crystal Structure Of Rat Synapsin I C Domain Complexed To
Ca.Atp (Form 1)
Length = 422
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 41 ETKSGYKFPKFVVMGHRGSGMNMLQSSDQR-MKSIKENTILSFNAAARHPLDFIEFDVQV 99
E S +P V MGH SGM ++ +Q + I L+ A P ++DV+V
Sbjct: 258 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRV 317
Query: 100 TRDG 103
+ G
Sbjct: 318 QKIG 321
>pdb|1AUX|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
pdb|1AUX|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
With Calcium Atp-Gamma-S Bound
Length = 311
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 41 ETKSGYKFPKFVVMGHRGSGMNMLQSSDQR-MKSIKENTILSFNAAARHPLDFIEFDVQV 99
E S +P V MGH SGM ++ +Q + I L+ A P ++DV++
Sbjct: 148 EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATTEPFIDAKYDVRI 207
Query: 100 TRDG 103
+ G
Sbjct: 208 QKIG 211
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 155 KDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLV 197
+DG + ++K+++ TPL L +A+ + + +FD Q +
Sbjct: 11 QDGSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPI 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,176,233
Number of Sequences: 62578
Number of extensions: 371454
Number of successful extensions: 912
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 19
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)