Query 021627
Match_columns 310
No_of_seqs 173 out of 1562
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08605 GDPD_GDE5_like_1_plant 100.0 1.2E-46 2.5E-51 343.2 26.0 252 53-308 2-258 (282)
2 cd08572 GDPD_GDE5_like Glycero 100.0 1.1E-46 2.4E-51 344.4 25.7 251 52-309 1-270 (293)
3 cd08568 GDPD_TmGDE_like Glycer 100.0 5.2E-46 1.1E-50 328.5 22.3 199 52-310 1-204 (226)
4 cd08606 GDPD_YPL110cp_fungi Gl 100.0 3.6E-45 7.9E-50 334.0 26.0 237 50-308 1-253 (286)
5 cd08607 GDPD_GDE5 Glycerophosp 100.0 2.8E-45 6.1E-50 335.4 24.4 248 52-308 1-266 (290)
6 cd08562 GDPD_EcUgpQ_like Glyce 100.0 8.7E-45 1.9E-49 321.1 23.4 207 53-310 1-209 (229)
7 PRK09454 ugpQ cytoplasmic glyc 100.0 1.3E-44 2.8E-49 324.0 24.5 211 49-310 6-219 (249)
8 cd08601 GDPD_SaGlpQ_like Glyce 100.0 1.8E-44 3.9E-49 324.4 24.2 219 52-310 2-228 (256)
9 cd08559 GDPD_periplasmic_GlpQ_ 100.0 1.8E-44 4E-49 330.5 20.6 235 51-310 1-266 (296)
10 cd08563 GDPD_TtGDE_like Glycer 100.0 7.6E-44 1.6E-48 315.5 23.7 209 51-310 1-210 (230)
11 cd08564 GDPD_GsGDE_like Glycer 100.0 6.8E-44 1.5E-48 322.2 23.8 217 49-307 2-230 (265)
12 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 4.5E-44 9.8E-49 320.8 22.2 225 50-310 1-233 (252)
13 cd08612 GDPD_GDE4 Glycerophosp 100.0 5E-44 1.1E-48 328.2 22.4 223 48-310 24-271 (300)
14 cd08580 GDPD_Rv2277c_like Glyc 100.0 7.3E-45 1.6E-49 326.2 16.0 223 51-310 1-240 (263)
15 cd08573 GDPD_GDE1 Glycerophosp 100.0 5.9E-44 1.3E-48 321.0 21.9 217 53-310 1-238 (258)
16 cd08582 GDPD_like_2 Glyceropho 100.0 1.1E-43 2.5E-48 314.9 22.9 209 53-310 1-211 (233)
17 cd08581 GDPD_like_1 Glyceropho 100.0 1.5E-43 3.4E-48 313.0 22.6 207 53-310 1-209 (229)
18 cd08610 GDPD_GDE6 Glycerophosp 100.0 1.3E-43 2.9E-48 325.2 22.9 239 34-310 7-255 (316)
19 cd08579 GDPD_memb_like Glycero 100.0 1.6E-43 3.5E-48 311.3 21.3 199 53-310 1-200 (220)
20 cd08567 GDPD_SpGDE_like Glycer 100.0 5.2E-43 1.1E-47 315.9 23.2 229 51-310 1-241 (263)
21 cd08565 GDPD_pAtGDE_like Glyce 100.0 5.5E-43 1.2E-47 310.7 22.5 210 53-310 1-211 (235)
22 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 1.9E-42 4.2E-47 321.7 25.8 248 48-310 14-301 (356)
23 cd08585 GDPD_like_3 Glyceropho 100.0 2.4E-42 5.3E-47 306.7 22.5 211 51-310 4-219 (237)
24 cd08609 GDPD_GDE3 Glycerophosp 100.0 2.7E-42 5.8E-47 316.7 23.2 236 34-310 11-255 (315)
25 cd08600 GDPD_EcGlpQ_like Glyce 100.0 9.9E-43 2.1E-47 321.3 20.2 238 51-310 1-286 (318)
26 cd08571 GDPD_SHV3_plant Glycer 100.0 1.3E-42 2.7E-47 318.4 18.6 229 51-310 1-261 (302)
27 cd08575 GDPD_GDE4_like Glycero 100.0 1.1E-42 2.3E-47 314.0 16.8 226 51-310 1-241 (264)
28 cd08566 GDPD_AtGDE_like Glycer 100.0 1E-41 2.2E-46 303.6 22.1 203 52-309 1-206 (240)
29 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 8.7E-42 1.9E-46 312.8 22.2 230 51-310 1-260 (300)
30 cd08608 GDPD_GDE2 Glycerophosp 100.0 2E-41 4.2E-46 314.1 22.3 221 50-310 1-233 (351)
31 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 3.1E-41 6.6E-46 310.2 22.3 231 51-310 1-276 (309)
32 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 1.2E-40 2.6E-45 296.3 22.9 210 53-310 1-215 (237)
33 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1.5E-40 3.2E-45 297.8 23.1 219 53-310 1-222 (249)
34 cd08570 GDPD_YPL206cp_fungi Gl 100.0 1.6E-40 3.5E-45 295.0 22.4 203 53-310 1-214 (234)
35 cd08578 GDPD_NUC-2_fungi Putat 100.0 2.1E-40 4.6E-45 301.2 22.8 221 78-309 17-276 (300)
36 PRK11143 glpQ glycerophosphodi 100.0 2E-40 4.4E-45 309.2 21.9 244 48-310 24-313 (355)
37 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 4.6E-38 1E-42 284.2 18.7 225 51-310 1-258 (299)
38 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.6E-36 3.5E-41 274.7 23.0 224 47-306 20-270 (309)
39 PF03009 GDPD: Glycerophosphor 100.0 1E-36 2.2E-41 271.8 18.1 221 56-310 1-232 (256)
40 COG0584 UgpQ Glycerophosphoryl 100.0 1.1E-35 2.4E-40 267.4 21.5 217 50-310 5-227 (257)
41 cd08556 GDPD Glycerophosphodie 100.0 1.3E-35 2.9E-40 254.1 20.8 170 53-310 1-170 (189)
42 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 1.8E-30 4E-35 221.3 15.5 149 53-310 1-159 (179)
43 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 1.3E-22 2.8E-27 171.6 16.0 147 77-305 7-154 (192)
44 KOG2258 Glycerophosphoryl dies 99.8 3.5E-21 7.5E-26 178.9 9.8 164 50-250 68-232 (341)
45 cd08577 PI-PLCc_GDPD_SF_unchar 99.3 3E-11 6.4E-16 106.5 10.6 95 82-220 15-109 (228)
46 KOG2421 Predicted starch-bindi 98.9 7.9E-10 1.7E-14 105.4 4.0 291 1-308 5-331 (417)
47 KOG2421 Predicted starch-bindi 98.5 1.1E-08 2.3E-13 97.7 -1.8 96 15-116 287-386 (417)
48 cd08592 PI-PLCc_gamma Catalyti 98.5 1.4E-07 3E-12 82.4 5.1 42 73-114 26-67 (229)
49 cd08576 GDPD_like_SMaseD_PLD G 98.4 5.5E-06 1.2E-10 74.1 13.8 185 77-310 8-219 (265)
50 cd08627 PI-PLCc_gamma1 Catalyt 98.4 4E-07 8.8E-12 79.2 4.9 42 73-114 26-67 (229)
51 cd08597 PI-PLCc_PRIP_metazoa C 97.9 1.3E-05 2.7E-10 71.6 4.7 42 73-114 26-67 (260)
52 smart00148 PLCXc Phospholipase 97.9 0.00012 2.5E-09 59.4 9.3 41 73-113 25-65 (135)
53 cd08594 PI-PLCc_eta Catalytic 96.9 0.0011 2.5E-08 57.8 4.5 41 73-113 26-66 (227)
54 cd08632 PI-PLCc_eta1 Catalytic 96.7 0.002 4.3E-08 57.1 4.5 41 73-113 26-66 (253)
55 cd08595 PI-PLCc_zeta Catalytic 96.7 0.002 4.3E-08 57.5 4.4 41 73-113 26-66 (257)
56 cd08558 PI-PLCc_eukaryota Cata 96.7 0.0023 4.9E-08 56.1 4.7 41 73-113 26-66 (226)
57 cd08633 PI-PLCc_eta2 Catalytic 96.7 0.002 4.4E-08 57.2 4.4 41 73-113 26-66 (254)
58 cd08631 PI-PLCc_delta4 Catalyt 96.7 0.0021 4.6E-08 57.3 4.5 41 73-113 26-66 (258)
59 cd08599 PI-PLCc_plant Catalyti 96.7 0.0024 5.2E-08 56.0 4.8 41 73-113 26-66 (228)
60 cd08596 PI-PLCc_epsilon Cataly 96.7 0.0023 5E-08 56.9 4.5 41 73-113 26-66 (254)
61 cd08628 PI-PLCc_gamma2 Catalyt 96.7 0.0025 5.5E-08 56.7 4.7 41 73-113 26-66 (254)
62 cd08630 PI-PLCc_delta3 Catalyt 96.7 0.0023 5E-08 57.1 4.4 42 73-114 26-67 (258)
63 cd08629 PI-PLCc_delta1 Catalyt 96.6 0.0027 5.8E-08 56.6 4.5 41 73-113 26-66 (258)
64 cd08593 PI-PLCc_delta Catalyti 96.6 0.0027 5.9E-08 56.7 4.4 41 73-113 26-66 (257)
65 cd08598 PI-PLC1c_yeast Catalyt 96.5 0.0033 7.2E-08 55.3 4.5 41 73-113 26-66 (231)
66 cd08626 PI-PLCc_beta4 Catalyti 96.5 0.0034 7.4E-08 55.9 4.3 41 73-113 26-68 (257)
67 cd08623 PI-PLCc_beta1 Catalyti 96.3 0.0047 1E-07 55.1 4.3 42 73-114 26-69 (258)
68 cd08624 PI-PLCc_beta2 Catalyti 96.3 0.0048 1E-07 55.1 4.2 41 73-113 26-68 (261)
69 cd08591 PI-PLCc_beta Catalytic 96.2 0.0062 1.3E-07 54.3 4.4 42 73-114 26-69 (257)
70 PF10223 DUF2181: Uncharacteri 96.1 0.07 1.5E-06 47.4 10.6 38 75-112 10-53 (244)
71 cd08625 PI-PLCc_beta3 Catalyti 95.8 0.01 2.2E-07 53.2 4.1 42 73-114 26-69 (258)
72 KOG1264 Phospholipase C [Lipid 95.0 0.021 4.6E-07 57.8 3.4 41 73-113 333-373 (1267)
73 KOG0169 Phosphoinositide-speci 94.2 0.046 1E-06 55.1 3.7 41 73-113 313-353 (746)
74 PLN02230 phosphoinositide phos 93.9 0.06 1.3E-06 53.8 3.9 42 73-114 139-180 (598)
75 PF00388 PI-PLC-X: Phosphatidy 93.3 1.1 2.3E-05 36.5 10.0 40 73-112 23-62 (146)
76 PLN02228 Phosphoinositide phos 93.1 0.11 2.4E-06 51.7 4.2 42 73-114 130-172 (567)
77 PLN02952 phosphoinositide phos 92.2 0.17 3.7E-06 50.7 4.4 42 73-114 147-189 (599)
78 cd00137 PI-PLCc Catalytic doma 91.2 0.37 8E-06 43.8 5.1 41 73-113 31-71 (274)
79 PLN02223 phosphoinositide phos 91.0 0.24 5.3E-06 48.8 3.9 37 77-113 135-171 (537)
80 PLN02222 phosphoinositide phos 90.5 0.31 6.7E-06 48.7 4.1 42 73-114 127-169 (581)
81 cd08589 PI-PLCc_SaPLC1_like Ca 89.3 1.9 4.2E-05 40.0 8.1 29 74-102 42-70 (324)
82 PRK15452 putative protease; Pr 89.1 23 0.0005 34.5 16.6 83 210-307 81-167 (443)
83 COG0159 TrpA Tryptophan syntha 84.6 4.5 9.8E-05 36.5 7.5 73 229-306 81-153 (265)
84 PRK13111 trpA tryptophan synth 84.1 4.8 0.0001 36.2 7.6 71 230-305 77-147 (258)
85 COG0826 Collagenase and relate 82.2 45 0.00098 31.4 15.9 85 208-307 82-170 (347)
86 CHL00200 trpA tryptophan synth 77.2 7.4 0.00016 35.1 6.4 70 230-305 80-149 (263)
87 PF00834 Ribul_P_3_epim: Ribul 76.5 7.9 0.00017 33.4 6.1 68 227-306 43-111 (201)
88 PRK08883 ribulose-phosphate 3- 75.5 18 0.00038 31.8 8.1 69 226-305 42-111 (220)
89 TIGR00262 trpA tryptophan synt 75.5 13 0.00029 33.3 7.5 68 231-303 76-143 (256)
90 PRK08745 ribulose-phosphate 3- 75.4 18 0.00038 31.8 8.1 68 227-305 47-115 (223)
91 COG1456 CdhE CO dehydrogenase/ 75.2 22 0.00047 33.5 8.8 43 204-249 146-189 (467)
92 PF01136 Peptidase_U32: Peptid 75.0 45 0.00099 29.0 10.8 86 207-307 4-93 (233)
93 COG0134 TrpC Indole-3-glycerol 74.6 14 0.0003 33.2 7.2 121 171-305 33-161 (254)
94 PRK09196 fructose-1,6-bisphosp 74.0 68 0.0015 30.2 12.0 87 205-303 29-139 (347)
95 PLN02591 tryptophan synthase 74.0 13 0.00028 33.3 7.0 69 231-305 68-136 (250)
96 PF00290 Trp_syntA: Tryptophan 73.4 7.1 0.00015 35.2 5.2 70 231-305 76-145 (259)
97 PTZ00170 D-ribulose-5-phosphat 73.1 24 0.00052 31.0 8.5 68 227-305 50-119 (228)
98 PRK05835 fructose-bisphosphate 72.9 80 0.0017 29.2 12.3 87 205-303 28-131 (307)
99 PF01081 Aldolase: KDPG and KH 71.8 20 0.00044 30.8 7.4 60 230-305 47-106 (196)
100 cd04726 KGPDC_HPS 3-Keto-L-gul 70.9 17 0.00037 30.8 6.9 71 226-305 37-108 (202)
101 PRK13307 bifunctional formalde 70.6 69 0.0015 30.7 11.4 71 225-305 209-281 (391)
102 PF03537 Glyco_hydro_114: Glyc 70.5 7.3 0.00016 27.8 3.8 33 272-306 23-55 (74)
103 PRK13399 fructose-1,6-bisphosp 70.3 82 0.0018 29.7 11.6 87 205-303 29-139 (347)
104 PRK08005 epimerase; Validated 69.1 28 0.00061 30.3 7.8 67 227-305 44-111 (210)
105 COG1038 PycA Pyruvate carboxyl 68.1 8.8 0.00019 39.8 5.0 45 261-305 66-110 (1149)
106 TIGR01521 FruBisAldo_II_B fruc 67.7 1.1E+02 0.0023 28.9 11.8 87 205-303 27-137 (347)
107 TIGR01182 eda Entner-Doudoroff 66.3 37 0.00081 29.4 8.0 81 208-305 23-106 (204)
108 TIGR00737 nifR3_yhdG putative 66.0 85 0.0018 28.9 10.9 58 229-298 180-237 (319)
109 PF00218 IGPS: Indole-3-glycer 64.5 53 0.0012 29.5 8.9 124 168-305 32-163 (254)
110 PRK06015 keto-hydroxyglutarate 64.3 40 0.00086 29.2 7.7 34 267-304 68-101 (201)
111 cd06544 GH18_narbonin Narbonin 64.1 44 0.00095 29.9 8.3 73 229-301 57-147 (253)
112 cd04724 Tryptophan_synthase_al 63.7 31 0.00068 30.5 7.3 23 75-97 13-35 (242)
113 cd02929 TMADH_HD_FMN Trimethyl 62.7 1.3E+02 0.0029 28.4 11.8 60 227-298 275-334 (370)
114 PF04413 Glycos_transf_N: 3-De 62.5 34 0.00073 29.1 7.0 86 207-305 37-123 (186)
115 PRK13125 trpA tryptophan synth 61.3 35 0.00076 30.2 7.2 69 230-305 63-134 (244)
116 cd02803 OYE_like_FMN_family Ol 61.1 1.3E+02 0.0028 27.6 11.3 60 227-298 267-326 (327)
117 TIGR01163 rpe ribulose-phospha 60.8 49 0.0011 28.0 7.9 22 75-96 10-31 (210)
118 PF13653 GDPD_2: Glycerophosph 60.0 6.1 0.00013 23.1 1.3 20 77-96 8-27 (30)
119 PF00289 CPSase_L_chain: Carba 59.4 19 0.00042 27.8 4.5 92 205-304 12-103 (110)
120 PRK09722 allulose-6-phosphate 58.7 55 0.0012 28.9 7.8 67 227-305 45-113 (229)
121 COG0191 Fba Fructose/tagatose 58.6 1.5E+02 0.0032 27.2 11.1 86 205-303 29-132 (286)
122 TIGR03128 RuMP_HxlA 3-hexulose 57.0 71 0.0015 27.1 8.2 37 268-304 69-106 (206)
123 cd08590 PI-PLCc_Rv2075c_like C 56.8 13 0.00028 33.6 3.6 38 74-112 39-76 (267)
124 TIGR03849 arch_ComA phosphosul 56.5 28 0.00062 30.9 5.6 43 263-305 72-118 (237)
125 cd00405 PRAI Phosphoribosylant 56.2 77 0.0017 27.0 8.3 56 229-298 36-93 (203)
126 KOG1265 Phospholipase C [Lipid 55.6 14 0.0003 38.7 3.8 38 77-114 342-381 (1189)
127 PF14871 GHL6: Hypothetical gl 54.5 29 0.00063 27.8 4.9 19 290-308 47-65 (132)
128 PRK05718 keto-hydroxyglutarate 54.5 74 0.0016 27.7 7.8 81 207-304 29-112 (212)
129 cd08588 PI-PLCc_At5g67130_like 54.3 23 0.00051 32.0 4.9 55 50-111 15-69 (270)
130 PRK07709 fructose-bisphosphate 52.6 1.9E+02 0.004 26.5 11.0 87 205-303 29-134 (285)
131 COG0036 Rpe Pentose-5-phosphat 52.6 90 0.0019 27.4 7.9 68 226-305 46-114 (220)
132 cd08557 PI-PLCc_bacteria_like 52.1 18 0.00039 32.2 3.8 37 77-113 38-75 (271)
133 PF10566 Glyco_hydro_97: Glyco 51.8 30 0.00065 31.4 5.1 47 263-309 33-95 (273)
134 PLN02334 ribulose-phosphate 3- 51.6 88 0.0019 27.3 8.0 67 227-305 51-120 (229)
135 PRK00865 glutamate racemase; P 51.2 61 0.0013 29.0 7.0 56 230-285 18-77 (261)
136 smart00481 POLIIIAc DNA polyme 50.9 51 0.0011 22.4 5.2 43 263-305 16-59 (67)
137 PRK05749 3-deoxy-D-manno-octul 50.1 1.9E+02 0.0042 27.4 10.8 87 207-306 66-153 (425)
138 PRK06552 keto-hydroxyglutarate 50.1 83 0.0018 27.4 7.5 36 266-305 79-114 (213)
139 COG0635 HemN Coproporphyrinoge 49.7 26 0.00056 33.9 4.6 84 183-282 123-224 (416)
140 TIGR02873 spore_ylxY probable 49.6 1.7E+02 0.0037 26.4 9.7 31 277-309 178-208 (268)
141 PRK11815 tRNA-dihydrouridine s 49.6 2.2E+02 0.0048 26.5 12.2 58 228-298 191-248 (333)
142 PRK12738 kbaY tagatose-bisphos 49.4 2.1E+02 0.0046 26.2 12.7 86 205-303 29-131 (286)
143 cd02872 GH18_chitolectin_chito 49.1 50 0.0011 30.9 6.5 55 232-286 60-123 (362)
144 PRK04452 acetyl-CoA decarbonyl 49.0 1.6E+02 0.0036 27.3 9.5 71 222-301 126-201 (319)
145 cd04734 OYE_like_3_FMN Old yel 48.6 2.3E+02 0.005 26.4 11.7 59 228-298 272-330 (343)
146 cd06548 GH18_chitinase The GH1 46.9 53 0.0012 30.3 6.2 56 231-286 73-136 (322)
147 PRK08195 4-hyroxy-2-oxovalerat 46.9 2.4E+02 0.0052 26.3 10.5 38 268-305 94-133 (337)
148 COG0796 MurI Glutamate racemas 46.4 2.3E+02 0.0049 25.7 12.6 78 169-249 17-98 (269)
149 PLN02460 indole-3-glycerol-pho 46.2 2.3E+02 0.0049 26.7 10.0 119 172-305 104-235 (338)
150 PRK09195 gatY tagatose-bisphos 46.0 2.4E+02 0.0051 25.8 12.4 86 205-303 29-131 (284)
151 PRK08091 ribulose-phosphate 3- 45.8 66 0.0014 28.4 6.2 64 227-304 56-122 (228)
152 PF13380 CoA_binding_2: CoA bi 45.7 50 0.0011 25.6 4.9 40 263-304 67-106 (116)
153 PF03599 CdhD: CO dehydrogenas 45.5 1.2E+02 0.0026 29.0 8.2 85 205-301 85-170 (386)
154 PRK12737 gatY tagatose-bisphos 45.2 2.4E+02 0.0053 25.7 12.2 86 205-303 29-131 (284)
155 TIGR01858 tag_bisphos_ald clas 44.2 2.5E+02 0.0055 25.6 11.7 86 205-303 27-129 (282)
156 PRK00278 trpC indole-3-glycero 44.2 2.4E+02 0.0051 25.3 10.7 119 172-306 40-166 (260)
157 TIGR00067 glut_race glutamate 43.1 96 0.0021 27.7 6.9 57 230-286 11-72 (251)
158 PRK07998 gatY putative fructos 42.7 2.7E+02 0.0058 25.5 12.8 87 205-303 29-131 (283)
159 PRK13957 indole-3-glycerol-pho 42.5 1.9E+02 0.004 25.9 8.6 116 172-305 31-156 (247)
160 COG0656 ARA1 Aldo/keto reducta 42.5 1.8E+02 0.0038 26.6 8.5 124 167-301 85-213 (280)
161 PF12957 DUF3846: Domain of un 42.1 52 0.0011 24.5 4.4 35 73-112 14-48 (95)
162 cd04729 NanE N-acetylmannosami 41.3 2.3E+02 0.005 24.3 13.4 120 176-305 3-128 (219)
163 PRK00865 glutamate racemase; P 40.6 2.7E+02 0.0058 24.9 12.7 77 169-247 17-96 (261)
164 KOG3111 D-ribulose-5-phosphate 40.5 1.2E+02 0.0027 26.1 6.7 67 227-305 48-117 (224)
165 PF10210 MRP-S32: Mitochondria 40.0 23 0.0005 26.8 2.0 16 95-110 4-20 (96)
166 PLN02858 fructose-bisphosphate 39.7 3.9E+02 0.0084 30.3 12.2 87 205-303 1125-1226(1378)
167 PRK00979 tetrahydromethanopter 39.7 2.6E+02 0.0055 25.9 9.2 122 170-303 81-222 (308)
168 TIGR01290 nifB nitrogenase cof 39.7 2.7E+02 0.0059 27.1 10.0 48 228-285 96-143 (442)
169 cd02879 GH18_plant_chitinase_c 39.7 75 0.0016 29.0 5.9 54 233-286 57-119 (299)
170 PF02679 ComA: (2R)-phospho-3- 39.1 47 0.001 29.6 4.2 43 263-305 85-131 (244)
171 cd07943 DRE_TIM_HOA 4-hydroxy- 38.8 1.2E+02 0.0027 27.0 7.0 14 291-304 116-129 (263)
172 cd00598 GH18_chitinase-like Th 38.5 1.6E+02 0.0034 24.7 7.5 58 230-287 52-116 (210)
173 TIGR03010 sulf_tusC_dsrF sulfu 38.1 23 0.00051 27.4 2.0 40 73-112 11-50 (116)
174 cd02810 DHOD_DHPD_FMN Dihydroo 38.0 3E+02 0.0065 24.7 12.6 57 230-298 230-288 (289)
175 PF02638 DUF187: Glycosyl hydr 37.3 27 0.00059 32.3 2.6 18 290-307 73-90 (311)
176 TIGR02764 spore_ybaN_pdaB poly 36.6 79 0.0017 26.5 5.2 31 277-309 99-129 (191)
177 COG0135 TrpF Phosphoribosylant 36.3 2.4E+02 0.0051 24.6 8.0 58 230-300 40-97 (208)
178 PF08955 BofC_C: BofC C-termin 36.0 55 0.0012 23.6 3.4 41 97-137 13-53 (75)
179 PRK12857 fructose-1,6-bisphosp 35.7 3.5E+02 0.0075 24.7 12.4 87 205-303 29-131 (284)
180 TIGR01163 rpe ribulose-phospha 34.9 31 0.00067 29.3 2.4 14 269-282 180-193 (210)
181 COG0800 Eda 2-keto-3-deoxy-6-p 34.8 1.4E+02 0.0029 26.1 6.2 59 230-304 52-110 (211)
182 PRK13306 ulaD 3-keto-L-gulonat 34.7 1.4E+02 0.003 26.0 6.5 69 225-305 39-111 (216)
183 cd02876 GH18_SI-CLP Stabilin-1 34.7 99 0.0022 28.4 5.9 53 232-284 56-118 (318)
184 PRK14042 pyruvate carboxylase 34.6 1.9E+02 0.0041 29.4 8.2 77 229-305 62-141 (596)
185 COG4770 Acetyl/propionyl-CoA c 34.4 59 0.0013 32.6 4.4 43 262-304 61-103 (645)
186 cd00429 RPE Ribulose-5-phospha 34.3 2.6E+02 0.0057 23.4 8.2 11 270-280 75-85 (211)
187 PRK08610 fructose-bisphosphate 34.2 3.7E+02 0.008 24.6 13.0 87 205-303 29-134 (286)
188 PRK14040 oxaloacetate decarbox 34.1 1.7E+02 0.0038 29.7 7.9 76 228-303 62-140 (593)
189 cd04724 Tryptophan_synthase_al 34.1 21 0.00046 31.6 1.2 11 209-219 120-130 (242)
190 COG1433 Uncharacterized conser 33.8 1E+02 0.0022 24.4 4.9 35 267-305 57-91 (121)
191 COG2089 SpsE Sialic acid synth 33.6 66 0.0014 30.0 4.3 45 48-102 12-56 (347)
192 PF13407 Peripla_BP_4: Peripla 33.4 1.1E+02 0.0023 26.5 5.7 44 265-308 45-88 (257)
193 COG1519 KdtA 3-deoxy-D-manno-o 33.3 4.5E+02 0.0097 25.5 10.0 85 207-304 65-150 (419)
194 PRK12581 oxaloacetate decarbox 33.3 1.9E+02 0.004 28.5 7.7 76 228-303 70-148 (468)
195 cd04864 LigD_Pol_like_1 LigD_P 33.0 3.2E+02 0.007 24.1 8.4 99 73-218 67-175 (228)
196 PRK05581 ribulose-phosphate 3- 32.4 2.7E+02 0.0058 23.7 8.0 10 267-276 101-110 (220)
197 cd02875 GH18_chitobiase Chitob 32.1 1.2E+02 0.0025 28.7 6.0 60 225-286 62-123 (358)
198 COG2923 DsrF Uncharacterized p 32.0 55 0.0012 25.7 3.0 50 49-111 2-51 (118)
199 TIGR03700 mena_SCO4494 putativ 31.8 1E+02 0.0022 28.9 5.5 11 171-181 79-89 (351)
200 TIGR03217 4OH_2_O_val_ald 4-hy 31.6 2E+02 0.0043 26.9 7.3 13 265-277 117-129 (333)
201 PRK13813 orotidine 5'-phosphat 31.5 2.5E+02 0.0053 24.0 7.6 37 269-305 74-111 (215)
202 PRK04165 acetyl-CoA decarbonyl 31.1 5.2E+02 0.011 25.4 11.2 70 221-301 156-226 (450)
203 PRK08508 biotin synthase; Prov 31.1 3.5E+02 0.0075 24.4 8.7 13 169-181 38-50 (279)
204 KOG0369 Pyruvate carboxylase [ 31.0 78 0.0017 32.5 4.6 91 207-304 45-135 (1176)
205 PRK01033 imidazole glycerol ph 30.7 3.9E+02 0.0084 23.8 11.8 101 170-282 110-226 (258)
206 PRK14057 epimerase; Provisiona 30.6 1.9E+02 0.0041 26.0 6.7 60 227-301 63-124 (254)
207 cd00947 TBP_aldolase_IIB Tagat 30.5 4.2E+02 0.009 24.1 10.7 52 242-303 69-126 (276)
208 PF02844 GARS_N: Phosphoribosy 30.4 68 0.0015 24.4 3.3 44 261-305 48-91 (100)
209 TIGR00167 cbbA ketose-bisphosp 30.3 2E+02 0.0044 26.3 7.0 53 241-303 76-134 (288)
210 PRK12330 oxaloacetate decarbox 30.3 2.6E+02 0.0057 27.8 8.2 76 228-303 62-140 (499)
211 PRK01130 N-acetylmannosamine-6 29.8 3.6E+02 0.0078 23.1 11.3 113 180-305 3-124 (221)
212 PF10941 DUF2620: Protein of u 29.5 2.8E+02 0.006 21.7 7.5 91 209-309 13-103 (117)
213 PRK09058 coproporphyrinogen II 28.8 3.3E+02 0.0071 26.5 8.6 96 172-283 132-251 (449)
214 cd04862 PaeLigD_Pol_like PaeLi 28.3 4.2E+02 0.0091 23.4 10.2 134 27-217 25-173 (227)
215 PRK09057 coproporphyrinogen II 28.2 3.6E+02 0.0077 25.5 8.6 84 183-282 90-190 (380)
216 PRK09140 2-dehydro-3-deoxy-6-p 28.1 2.9E+02 0.0064 23.7 7.4 35 266-304 74-108 (206)
217 cd06533 Glyco_transf_WecG_TagA 27.9 3.5E+02 0.0076 22.4 9.8 87 205-300 33-123 (171)
218 TIGR03471 HpnJ hopanoid biosyn 27.8 2.5E+02 0.0054 27.4 7.7 112 173-301 263-392 (472)
219 cd08586 PI-PLCc_BcPLC_like Cat 27.5 74 0.0016 28.9 3.7 38 76-113 33-70 (279)
220 cd06549 GH18_trifunctional GH1 27.5 1.1E+02 0.0024 27.9 4.9 41 263-305 92-143 (298)
221 PRK00211 sulfur relay protein 26.9 75 0.0016 24.8 3.2 38 75-112 15-52 (119)
222 PRK11172 dkgB 2,5-diketo-D-glu 26.8 4E+02 0.0088 23.6 8.4 83 211-301 114-201 (267)
223 smart00052 EAL Putative diguan 26.7 3.9E+02 0.0085 22.5 9.0 121 169-303 101-227 (241)
224 PRK08227 autoinducer 2 aldolas 26.5 2.2E+02 0.0048 25.7 6.4 79 230-308 62-148 (264)
225 PF05198 IF3_N: Translation in 26.3 1E+02 0.0022 22.1 3.5 41 44-96 8-48 (76)
226 PRK05628 coproporphyrinogen II 26.2 2.5E+02 0.0054 26.4 7.2 94 172-281 77-194 (375)
227 smart00636 Glyco_18 Glycosyl h 26.2 1.3E+02 0.0027 27.7 5.1 54 233-286 57-118 (334)
228 PF02811 PHP: PHP domain; Int 26.2 1.3E+02 0.0028 24.2 4.7 44 262-305 16-60 (175)
229 PF03808 Glyco_tran_WecB: Glyc 25.8 3.8E+02 0.0083 22.1 9.8 72 205-284 35-110 (172)
230 PF00704 Glyco_hydro_18: Glyco 25.6 98 0.0021 28.3 4.2 60 230-289 61-129 (343)
231 PRK07084 fructose-bisphosphate 25.4 3.2E+02 0.007 25.5 7.4 87 205-303 35-142 (321)
232 COG0796 MurI Glutamate racemas 25.0 3E+02 0.0064 25.0 6.9 68 230-299 18-89 (269)
233 PRK06294 coproporphyrinogen II 24.8 1.2E+02 0.0026 28.6 4.7 95 172-282 76-190 (370)
234 PF11525 CopK: Copper resistan 24.7 58 0.0013 23.0 1.8 22 97-118 43-64 (73)
235 cd00452 KDPG_aldolase KDPG and 24.5 4.2E+02 0.0091 22.2 10.8 34 267-304 68-101 (190)
236 PF07788 DUF1626: Protein of u 24.5 92 0.002 22.1 2.9 17 92-109 2-18 (70)
237 cd03174 DRE_TIM_metallolyase D 23.9 2.8E+02 0.006 24.3 6.7 38 264-302 117-161 (265)
238 PRK13802 bifunctional indole-3 23.6 8.5E+02 0.018 25.4 10.7 109 183-305 49-165 (695)
239 PF00248 Aldo_ket_red: Aldo/ke 23.6 3.3E+02 0.0072 24.0 7.2 60 172-236 87-147 (283)
240 cd02801 DUS_like_FMN Dihydrour 23.5 4.7E+02 0.01 22.3 12.7 60 228-299 170-229 (231)
241 PRK10550 tRNA-dihydrouridine s 23.2 5.9E+02 0.013 23.4 11.1 59 228-298 181-239 (312)
242 PF02836 Glyco_hydro_2_C: Glyc 23.2 1.8E+02 0.004 26.2 5.5 40 264-305 38-77 (298)
243 PRK09250 fructose-bisphosphate 23.0 2.6E+02 0.0056 26.4 6.4 78 230-307 112-199 (348)
244 KOG2335 tRNA-dihydrouridine sy 22.8 1.7E+02 0.0036 27.7 5.0 107 169-293 125-243 (358)
245 PRK13586 1-(5-phosphoribosyl)- 22.7 5E+02 0.011 22.7 8.0 98 171-282 110-218 (232)
246 PF04309 G3P_antiterm: Glycero 22.7 2E+02 0.0042 24.3 5.0 32 265-302 61-93 (175)
247 PRK07379 coproporphyrinogen II 22.6 2.9E+02 0.0064 26.3 7.0 84 183-282 101-202 (400)
248 PRK05926 hypothetical protein; 22.5 2E+02 0.0043 27.3 5.7 15 291-305 211-225 (370)
249 COG0284 PyrF Orotidine-5'-phos 22.5 5.2E+02 0.011 23.0 7.9 60 172-243 54-114 (240)
250 PRK09989 hypothetical protein; 22.2 2E+02 0.0044 25.3 5.5 45 263-307 16-60 (258)
251 PRK07114 keto-hydroxyglutarate 22.1 5.4E+02 0.012 22.5 12.4 35 266-304 82-116 (222)
252 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.1 3.5E+02 0.0077 24.3 7.0 8 187-194 37-44 (275)
253 PF11330 DUF3132: Protein of u 22.0 1E+02 0.0022 22.9 2.8 37 94-137 78-114 (124)
254 COG0763 LpxB Lipid A disacchar 22.0 2.8E+02 0.0061 26.5 6.4 29 227-255 96-124 (381)
255 PRK05904 coproporphyrinogen II 21.9 2.4E+02 0.0052 26.5 6.1 85 182-282 88-190 (353)
256 PF09614 Cas_Csy2: CRISPR-asso 21.7 2.7E+02 0.0058 25.6 6.1 61 183-245 98-166 (296)
257 TIGR03234 OH-pyruv-isom hydrox 21.6 2E+02 0.0043 25.2 5.3 45 262-306 14-58 (254)
258 TIGR00288 conserved hypothetic 21.6 1.7E+02 0.0037 24.3 4.4 44 265-309 95-138 (160)
259 PF03740 PdxJ: Pyridoxal phosp 21.5 81 0.0017 28.1 2.6 24 73-96 129-152 (239)
260 PRK13347 coproporphyrinogen II 21.4 1.2E+02 0.0026 29.6 4.0 96 171-282 120-239 (453)
261 PF02515 CoA_transf_3: CoA-tra 21.4 2.1E+02 0.0046 24.1 5.1 52 186-252 1-59 (191)
262 cd07944 DRE_TIM_HOA_like 4-hyd 21.2 3.6E+02 0.0077 24.2 6.8 14 264-277 111-124 (266)
263 PRK11475 DNA-binding transcrip 21.1 5.1E+02 0.011 22.1 7.6 12 170-181 23-34 (207)
264 COG2197 CitB Response regulato 20.6 3.7E+02 0.008 23.0 6.6 44 229-283 61-104 (211)
265 cd04861 LigD_Pol_like LigD_Pol 20.3 6E+02 0.013 22.4 9.5 135 27-218 25-174 (227)
266 COG0826 Collagenase and relate 20.3 1.8E+02 0.0039 27.4 4.8 21 73-93 10-30 (347)
267 PF02579 Nitro_FeMo-Co: Dinitr 20.2 2.7E+02 0.0059 19.8 5.0 37 266-306 44-80 (94)
268 PRK02083 imidazole glycerol ph 20.2 6E+02 0.013 22.3 11.5 120 170-303 110-251 (253)
No 1
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=1.2e-46 Score=343.22 Aligned_cols=252 Identities=50% Similarity=0.786 Sum_probs=191.5
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
+|||||++.+..+..-.-...+||||++||++|++.|||+||+|||+||||++||+||.+++|+++|...++.|.++|++
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~~~~~V~dlT~~ 81 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVESSRIRDLTLA 81 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCcCccchhhCcHH
Confidence 79999999754331000012578999999999999999999999999999999999999999999872223899999999
Q ss_pred HHhccCCCCCCCCCCC--c---ccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGK--P---MLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHAL 207 (310)
Q Consensus 133 el~~l~~~~~~g~~~~--~---~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v 207 (310)
||++++. |.++. + .++.........+....+++||||+|+|+.++.++.+|||||.+.......+.+..++
T Consensus 82 EL~~ld~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~ 157 (282)
T cd08605 82 ELKALGP----QAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVREL 157 (282)
T ss_pred HHHhccc----cccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHH
Confidence 9999953 32210 0 0000000000011112468999999999999878899999998653322223344567
Q ss_pred HHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc
Q 021627 208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (310)
Q Consensus 208 ~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~ 287 (310)
+.+++.++++++.++++|+||++++|+.+++++|++++++++......+.+.+..++..+..+++..++.++++++..+.
T Consensus 158 ~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (282)
T cd08605 158 RAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL 237 (282)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh
Confidence 88999999999889999999999999999999999999999864322222333345566778888999999999887656
Q ss_pred cChHHHHHHHHhCCEEEeecC
Q 021627 288 KNPGAIKKIKEAKLCLVSYGE 308 (310)
Q Consensus 288 ~~~~lv~~~~~~Gl~v~vwTv 308 (310)
+++++|+.+|++|+.|++|||
T Consensus 238 ~~~~~v~~~~~~Gl~v~vWTv 258 (282)
T cd08605 238 RNPTAVSLVKASGLELGTYGK 258 (282)
T ss_pred cCcHHHHHHHHcCcEEEEeCC
Confidence 799999999999999999998
No 2
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.1e-46 Score=344.40 Aligned_cols=251 Identities=42% Similarity=0.705 Sum_probs=193.3
Q ss_pred eEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCc-------cccc
Q 021627 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGE-------IIEK 124 (310)
Q Consensus 52 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~-------~~~~ 124 (310)
+||||||+++++-. ..++.+||||++||+.|+++|+|+||+|||+|+||++||+||.++.|+++++ +.++
T Consensus 1 ~viaHRG~~~~~~~---~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~~~~~g~~~ 77 (293)
T cd08572 1 LVIGHRGLGKNYAS---GSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTGSDEGELIEV 77 (293)
T ss_pred CceEecCCCCCcCc---ccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccccccCcceee
Confidence 58999999732100 0012799999999999999999999999999999999999999999998753 2347
Q ss_pred cccccCHHHHhccCCCCCCCCCCC----cccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCccc---
Q 021627 125 RVTDITLAEFLSYGPQNDPENVGK----PMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLV--- 197 (310)
Q Consensus 125 ~i~~lt~~el~~l~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~--- 197 (310)
.|.++|++||++++. +.++. ...|+........+....+++||||+|+|+.++.++.+|||||.+....
T Consensus 78 ~v~~lT~~eL~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~ 153 (293)
T cd08572 78 PIHDLTLEQLKELGL----QHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLLEDGE 153 (293)
T ss_pred ehhhCcHHHHHhccc----cccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcccccc
Confidence 899999999999954 22210 0111000000011122356899999999999988899999999865321
Q ss_pred ---ccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCc--cccccccCCHHHHHHHHH
Q 021627 198 ---YTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ--TCTDVRRSSLDEAIKVCL 272 (310)
Q Consensus 198 ---~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~ 272 (310)
......+.+++.++++++++++.++++++||++++|+.+++.+|++++++++..... .+.+.+..++..++++++
T Consensus 154 ~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (293)
T cd08572 154 GELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRRSLQAAVNFAL 233 (293)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhhhHHHHHHHHH
Confidence 111234578999999999999999999999999999999999999999999865432 122333345677788899
Q ss_pred HcCCceEEecccccccChHHHHHHHHhCCEEEeecCC
Q 021627 273 AGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 273 ~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
..++.++++++..+++++++|+.+|++|+.|++|||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTv~ 270 (293)
T cd08572 234 AEGLLGVVLHAEDLLKNPSLISLVKALGLVLFTYGDD 270 (293)
T ss_pred HCCCeEEEechHHhhcCcHHHHHHHHcCcEEEEECCC
Confidence 9999999988877677999999999999999999993
No 3
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=5.2e-46 Score=328.50 Aligned_cols=199 Identities=27% Similarity=0.316 Sum_probs=170.5
Q ss_pred eEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCH
Q 021627 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITL 131 (310)
Q Consensus 52 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~ 131 (310)
+||||||+++ .+||||++||++|++.|+|+||+|||+|+||++||+||.+++|+++|+ +.|.++|+
T Consensus 1 ~iiaHRG~~~-----------~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~---g~v~~~t~ 66 (226)
T cd08568 1 IILGHRGYRA-----------KYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVD---LKVKELTY 66 (226)
T ss_pred CEEeccCCCC-----------CCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCCC---ceeecCCH
Confidence 5899999997 799999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHH
Q 021627 132 AEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (310)
Q Consensus 132 ~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl 211 (310)
+||++++. .+++||||+|+|+.++.+..++||||.+. .++.++
T Consensus 67 ~eL~~l~~--------------------------~g~~iPtL~evl~~~~~~~~l~iEiK~~~-----------~~~~~~ 109 (226)
T cd08568 67 KELKKLHP--------------------------GGELIPTLEEVFRALPNDAIINVEIKDID-----------AVEPVL 109 (226)
T ss_pred HHHhhCCC--------------------------CCCcCCCHHHHHHhcCCCcEEEEEECCcc-----------HHHHHH
Confidence 99999842 15789999999999987789999999642 467788
Q ss_pred HHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc-----
Q 021627 212 KVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI----- 286 (310)
Q Consensus 212 ~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l----- 286 (310)
++++++++.++++++||+++.++.+++..|++++++++...... ....++++..++.++++++..+
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEG---------FSIPELHEKLKLYSLHVPIDAIGYIGF 180 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccc---------cCHHHHHHhcCCcEeccchhhhccccc
Confidence 88999999999999999999999999999999999998542110 1122455667777777765432
Q ss_pred ccChHHHHHHHHhCCEEEeecCCC
Q 021627 287 FKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 287 ~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
..++++++.+|++|+.|++|||++
T Consensus 181 ~~~~~~v~~~~~~G~~v~~WTvn~ 204 (226)
T cd08568 181 EKFVELLRLLRKLGLKIVLWTVND 204 (226)
T ss_pred cccHHHHHHHHHCCCEEEEEcCCC
Confidence 125899999999999999999974
No 4
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=3.6e-45 Score=334.02 Aligned_cols=237 Identities=37% Similarity=0.550 Sum_probs=183.7
Q ss_pred cceEEEecCCCCCccCcchhhhcccc--------cchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcc
Q 021627 50 KFVVMGHRGSGMNMLQSSDQRMKSIK--------ENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI 121 (310)
Q Consensus 50 ~~~iiaHRG~~~~~~~~~~~~~~~~p--------ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~ 121 (310)
.++||||||+++ .+| |||++||+.|+++|+|+||+|||+||||++||+||.+++|+ +++
T Consensus 1 ~~~iiaHRG~~~-----------~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~~- 67 (286)
T cd08606 1 SVQVIGHRGLGK-----------NTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GTD- 67 (286)
T ss_pred CceEEEeCCCCC-----------CcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CCC-
Confidence 368999999998 566 99999999999999999999999999999999999999985 554
Q ss_pred ccccccccCHHHHhccCCCCCCCCC-CCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCccccc-
Q 021627 122 IEKRVTDITLAEFLSYGPQNDPENV-GKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYT- 199 (310)
Q Consensus 122 ~~~~i~~lt~~el~~l~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~- 199 (310)
+.|.++|++||++++.. +.+.. +...+.....| ...+++||||+|+|+.++.++.+|||||.+......
T Consensus 68 --~~v~~lt~~eL~~ld~~-~~~~~~~~~~~~~~~~g------~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~ 138 (286)
T cd08606 68 --VPIHDLTLEQFLHLSRM-KYTVDFKKKGFKGNSRG------HSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEE 138 (286)
T ss_pred --CccccCCHHHHHhhhcc-cccccccccCCCCcccc------cccccCCCcHHHHHHhCCCccceEEEEecCCcchhhh
Confidence 78999999999998521 01110 00001000000 001246899999999998889999999986532100
Q ss_pred ------HHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 200 ------EEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 200 ------~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
....+.+++.+++.++++++.++++|+||++++|+.+++++|++++++++..+.....+.+..++..++.++..
T Consensus 139 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (286)
T cd08606 139 EEVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAIRFAKQ 218 (286)
T ss_pred cccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHHHHHHH
Confidence 11335788999999999999999999999999999999999999999998653322222222345556778889
Q ss_pred cCCceEEecccccccChHHHHHHHHhCCEEEeecC
Q 021627 274 GGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGE 308 (310)
Q Consensus 274 ~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv 308 (310)
+++.++++.......++++|+.+|++|+.|++|||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~WTv 253 (286)
T cd08606 219 WNLLGLVSAAEPLVMCPRLIQVVKRSGLVCVSYGV 253 (286)
T ss_pred CCCeEEEechHHhhhChHHHHHHHHCCcEEEEECC
Confidence 99999987666556699999999999999999998
No 5
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=2.8e-45 Score=335.43 Aligned_cols=248 Identities=31% Similarity=0.480 Sum_probs=188.3
Q ss_pred eEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcc-------ccc
Q 021627 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI-------IEK 124 (310)
Q Consensus 52 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~-------~~~ 124 (310)
+.|||||++++.++. .+.+||||++||+.|+++|+|+||+|||+||||++||+||.+++|++++.+ .++
T Consensus 1 ~~iaHRG~~~~~~~~----~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~~~~~~~~ 76 (290)
T cd08607 1 LDVGHRGAGNSYTAA----SAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSDRDDLLEV 76 (290)
T ss_pred CceecCCCCcCcccc----cCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccccCccceEEE
Confidence 469999996321110 027999999999999999999999999999999999999999999988741 134
Q ss_pred cccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCccccc-----
Q 021627 125 RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYT----- 199 (310)
Q Consensus 125 ~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~----- 199 (310)
.|.++|++||++++... .+.++.+.++... .......+++||||+|+|+.++.++.+|||||.+......
T Consensus 77 ~v~~lt~~eL~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~~~ 151 (290)
T cd08607 77 PVKDLTYEQLKLLKLFH-ISALKVKEYKSVE----EDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWESE 151 (290)
T ss_pred ecccCCHHHHhhcCccc-ccccccccccccc----cccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccccc
Confidence 89999999999995321 0111111111000 0001123678999999999998889999999976421100
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCc---cccccccCCHHHHHHHHHH
Q 021627 200 ---EEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ---TCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 200 ---~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~ 273 (310)
....+.+++.+++.+.++++.++++|+||++++|..+++++|++|+++++..... .+.+.+..++..++++++.
T Consensus 152 ~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (290)
T cd08607 152 LFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEIAVNFAQA 231 (290)
T ss_pred cccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHHHHHHHHH
Confidence 1233568899999999998889999999999999999999999999999864321 1223333345667788888
Q ss_pred cCCceEEecccccccChHHHHHHHHhCCEEEeecC
Q 021627 274 GGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGE 308 (310)
Q Consensus 274 ~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv 308 (310)
.++.++.++....+.++++|+.+|++|+.|++|||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTv 266 (290)
T cd08607 232 EELLGVNLHSEDLLKDPSQIELAKSLGLVVFCWGD 266 (290)
T ss_pred cCCceeEechhhhhcChHHHHHHHHcCCEEEEECC
Confidence 99988888877767799999999999999999999
No 6
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=8.7e-45 Score=321.06 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=176.5
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++.|+++++ +.|+++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~---~~i~~lt~~ 66 (229)
T cd08562 1 IIAHRGASS-----------LAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGS---GAVTELTWA 66 (229)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccCCC---ceeecCcHH
Confidence 699999987 799999999999999999999999999999999999999999999987 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl 211 (310)
||++++. +.++.+ .+.++++|||+|+|+.++ .++.++||||.+... ...+++.++
T Consensus 67 el~~l~~----~~~~~~--------------~~~~~~iptl~evl~~~~~~~~~l~iEiK~~~~~------~~~~~~~v~ 122 (229)
T cd08562 67 ELAQLDA----GSWFSP--------------EFAGEPIPTLADVLELARELGLGLNLEIKPDPGD------EALTARVVA 122 (229)
T ss_pred HHhhcCC----CcccCC--------------CCCCCCCCCHHHHHHHHHhcCCEEEEEECCCCCc------cHHHHHHHH
Confidence 9999853 222111 134689999999999997 479999999986532 125778889
Q ss_pred HHHHHhcCC-CCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccCh
Q 021627 212 KVVFEHAQG-RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290 (310)
Q Consensus 212 ~~l~~~~~~-~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~ 290 (310)
++++++++. ++++|+||++++++.+++..|+++++++..... ....+.++..++.++.+++..+ ++
T Consensus 123 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--~~ 189 (229)
T cd08562 123 AALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLP-----------ADWLELLAALGAVSIHLNYRGL--TE 189 (229)
T ss_pred HHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCC-----------cCHHHHHHHcCCeEEecChhhC--CH
Confidence 999999885 999999999999999999999999999975421 1223456678888888887765 99
Q ss_pred HHHHHHHHhCCEEEeecCCC
Q 021627 291 GAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 291 ~lv~~~~~~Gl~v~vwTv~n 310 (310)
++|+.+|++|+.|++||+++
T Consensus 190 ~~v~~~~~~g~~v~~wTvn~ 209 (229)
T cd08562 190 EQVKALKDAGYKLLVYTVND 209 (229)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 99999999999999999985
No 7
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.3e-44 Score=323.97 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=169.6
Q ss_pred CcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccc
Q 021627 49 PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTD 128 (310)
Q Consensus 49 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~ 128 (310)
+.|.+|||||+++ .+||||++||+.|++.|+|+||+|||+|+||++||+||.++.|+++|+ +.|.+
T Consensus 6 ~~~~iiaHRG~~~-----------~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~---~~v~~ 71 (249)
T PRK09454 6 PYPRIVAHRGGGK-----------LAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGW---GVAGE 71 (249)
T ss_pred CCCeEEECCCCCC-----------CCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCCCC---Cchhh
Confidence 3689999999987 799999999999999999999999999999999999999999999997 89999
Q ss_pred cCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHHHHHHHH
Q 021627 129 ITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHAL 207 (310)
Q Consensus 129 lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~~~~~~v 207 (310)
+||+||++++. |.++.+. +.+++||||+|+|+.++ .++.+|||||...... . ...
T Consensus 72 ~t~~el~~l~~----~~~~~~~--------------~~~~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~---~---~~~ 127 (249)
T PRK09454 72 LTWQDLAQLDA----GSWFSAA--------------FAGEPLPTLSQVAARCRAHGMAANIEIKPTTGRE---A---ETG 127 (249)
T ss_pred CCHHHHHhcCC----CCccCCC--------------CCCCcCCCHHHHHHHHHhcCCEEEEEECCCCCcc---h---hHH
Confidence 99999999843 4332221 35689999999999986 4789999999653311 1 112
Q ss_pred HHHHHHHHHh--cCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc
Q 021627 208 EAILKVVFEH--AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA 285 (310)
Q Consensus 208 ~~vl~~l~~~--~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 285 (310)
..+...+... +..++++|+||++++|..++++.|++++++++.... ......+...++.++++++..
T Consensus 128 ~~v~~~~~~~~~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 196 (249)
T PRK09454 128 RVVALAARALWAGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWP-----------DDWLELTRRLGCVSLHLNHKL 196 (249)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEecccc-----------ccHHHHHHhcCCeEEeccccc
Confidence 2222223332 455789999999999999999999999999975321 111234456788888887765
Q ss_pred cccChHHHHHHHHhCCEEEeecCCC
Q 021627 286 IFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 286 l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+ ++++++.+|++|++|++|||++
T Consensus 197 ~--~~~~v~~~~~~g~~v~~WTvn~ 219 (249)
T PRK09454 197 L--DEARVAALKAAGLRILVYTVND 219 (249)
T ss_pred C--CHHHHHHHHHCCCEEEEEeCCC
Confidence 5 9999999999999999999975
No 8
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-44 Score=324.44 Aligned_cols=219 Identities=21% Similarity=0.247 Sum_probs=176.8
Q ss_pred eEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccC--cccccccccc
Q 021627 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEG--EIIEKRVTDI 129 (310)
Q Consensus 52 ~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g--~~~~~~i~~l 129 (310)
+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|++++ + +.|.++
T Consensus 2 ~iiaHRG~~~-----------~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~---g~v~~~ 67 (256)
T cd08601 2 AVIAHRGASG-----------YAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERP---GPVKDY 67 (256)
T ss_pred ceEEcCCCCC-----------CCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCCCC---ceeecC
Confidence 6899999987 79999999999999999999999999999999999999999999988 7 899999
Q ss_pred CHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHH
Q 021627 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEA 209 (310)
Q Consensus 130 t~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~ 209 (310)
|++||++++. |.++...++.... ....++++|||+|+|+.++.++.++||||.+... ..+++.
T Consensus 68 t~~el~~l~~----~~~~~~~~~~~~~------~~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~-------~~~~~~ 130 (256)
T cd08601 68 TLAEIKQLDA----GSWFNKAYPEYAR------ESYSGLKVPTLEEVIERYGGRANYYIETKSPDLY-------PGMEEK 130 (256)
T ss_pred cHHHHHhcCC----CccccccCccccc------cccCCccCCCHHHHHHHhccCceEEEEeeCCCCC-------CCHHHH
Confidence 9999999853 3222211110000 0134689999999999998888999999975431 136778
Q ss_pred HHHHHHHhcCC------CCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc
Q 021627 210 ILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (310)
Q Consensus 210 vl~~l~~~~~~------~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 283 (310)
+++.++++++. ++++|+||++++++.+++..|+++++++++..... ......++.++. ++.++.++.
T Consensus 131 v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~ 203 (256)
T cd08601 131 LLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGA------ETYDKWLDEIKE-YAIGIGPSI 203 (256)
T ss_pred HHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccc------ccchhHHHHHHh-cCeEeCCch
Confidence 89999999887 89999999999999999999999999997543210 011233455555 777887776
Q ss_pred cccccChHHHHHHHHhCCEEEeecCCC
Q 021627 284 RAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 284 ~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
..+ ++++++.+|++|+.|++||+++
T Consensus 204 ~~~--~~~~v~~~~~~g~~v~~wTvn~ 228 (256)
T cd08601 204 ADA--DPWMVHLIHKKGLLVHPYTVNE 228 (256)
T ss_pred hhc--CHHHHHHHHHCCCEEEEEecCC
Confidence 654 8999999999999999999974
No 9
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=1.8e-44 Score=330.53 Aligned_cols=235 Identities=23% Similarity=0.217 Sum_probs=175.9
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcc-c-------
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI-I------- 122 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~-~------- 122 (310)
|+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++.|++++.. .
T Consensus 1 p~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~~~~~ 69 (296)
T cd08559 1 PLVIAHRGASG-----------YAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFRGRKD 69 (296)
T ss_pred CeEEEeCCcCC-----------CCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCccccccccccCC
Confidence 68999999998 7999999999999999999999999999999999999999999998751 1
Q ss_pred -cccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-------cceEEEEeccCC
Q 021627 123 -EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVELKFDD 194 (310)
Q Consensus 123 -~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~IEiK~~~ 194 (310)
++.|.++|++||++++. |.++.+.+.. +. .....+++||||+|+|+.++. ++.++||||.+.
T Consensus 70 ~~~~v~~~t~~eL~~l~~----~~~~~~~~~~----~~--~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~ 139 (296)
T cd08559 70 TGYFVIDFTLAELKTLRA----GSWFNQRYPE----RA--PSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPT 139 (296)
T ss_pred CCeeeecCcHHHHhcCCC----CCcccccccc----cC--ccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChh
Confidence 16899999999999953 4333222110 00 011356899999999999975 689999999753
Q ss_pred cccccHHHHHHHHHHHHHHHHHhcCC---CCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCcccc----ccccCCHHHH
Q 021627 195 QLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCT----DVRRSSLDEA 267 (310)
Q Consensus 195 ~~~~~~~~~~~~v~~vl~~l~~~~~~---~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~----~~~~~~l~~~ 267 (310)
... .....+++.++++++++++. ++++|+||++++|+.+++..|++++++|+........ +.........
T Consensus 140 ~~~---~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 216 (296)
T cd08559 140 FHK---QEGPDIEEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAG 216 (296)
T ss_pred hhh---hcCCCHHHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHH
Confidence 210 00124788899999999887 8999999999999999999999999999864321000 0000001112
Q ss_pred HHHHHHcCCceEEecccccc--------cChHHHHHHHHhCCEEEeecCCC
Q 021627 268 IKVCLAGGLQGIVSEVRAIF--------KNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 268 ~~~~~~~~~~~i~~~~~~l~--------~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
++.++. ++.++++++..+. .++++|+.+|++|+.|++|||++
T Consensus 217 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 217 LKEIAK-YADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred HHHHHH-HhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEEEecC
Confidence 222222 6677777665441 12899999999999999999985
No 10
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=7.6e-44 Score=315.50 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=178.9
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccC
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt 130 (310)
++||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++.|+++++ +.|.++|
T Consensus 1 ~~iiaHRG~~~-----------~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~---~~i~~~t 66 (230)
T cd08563 1 TLIFAHRGYSG-----------TAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGK---GYVKDLT 66 (230)
T ss_pred CeEEEccCCCC-----------CCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCCC---CchhhCC
Confidence 47999999987 799999999999999999999999999999999999999999999887 8999999
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHHHHHHHHHH
Q 021627 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEA 209 (310)
Q Consensus 131 ~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~~~~~~v~~ 209 (310)
++||++++... .+.+ ...++++|||+|+|+.++ .++.++||+|.+... + ..+++.
T Consensus 67 ~~el~~l~~~~----~~~~--------------~~~~~~iptL~evl~~~~~~~~~l~leiK~~~~~-~-----~~~~~~ 122 (230)
T cd08563 67 LEELKKLDAGS----WFDE--------------KFTGEKIPTLEEVLDLLKDKDLLLNIEIKTDVIH-Y-----PGIEKK 122 (230)
T ss_pred HHHHHhcCCCC----ccCc--------------cCCCCcCCCHHHHHHHHHhcCcEEEEEECCCCCc-C-----hhHHHH
Confidence 99999985432 1111 124578999999999998 589999999976431 1 247888
Q ss_pred HHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccC
Q 021627 210 ILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN 289 (310)
Q Consensus 210 vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~ 289 (310)
+++.++++++.++++++||+++.++.+++..|++++++++.... ....+++...++.++++++..+ +
T Consensus 123 l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~--~ 189 (230)
T cd08563 123 VLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIKLALLYETGL-----------QDPKDYAKKIGADSLHPDFKLL--T 189 (230)
T ss_pred HHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcc-----------cCHHHHHHHhCCEEEccCchhc--C
Confidence 99999999999999999999999999999999999999976421 1234667778888888877654 9
Q ss_pred hHHHHHHHHhCCEEEeecCCC
Q 021627 290 PGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 290 ~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+++++.+|++|+.|++||+++
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~ 210 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNE 210 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCC
Confidence 999999999999999999974
No 11
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.8e-44 Score=322.19 Aligned_cols=217 Identities=24% Similarity=0.243 Sum_probs=178.8
Q ss_pred CcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcc--------ccccCc
Q 021627 49 PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF--------TKDEGE 120 (310)
Q Consensus 49 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~--------r~t~g~ 120 (310)
.+|+||||||+++. +.+||||++||++|+++|+|+||+|||+||||++||+||.+++ |+++|.
T Consensus 2 ~~~~iiaHRG~~~~---------~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~ 72 (265)
T cd08564 2 VRPIIVGHRGAGCS---------TLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGF 72 (265)
T ss_pred CCceEEEeCCCCCC---------CCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCCCc
Confidence 47899999999871 1389999999999999999999999999999999999998654 466776
Q ss_pred cccccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccH
Q 021627 121 IIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTE 200 (310)
Q Consensus 121 ~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~ 200 (310)
+.|.++|++||++++. |.++.+. +.. .....+++||||+|+|+.++.++.++||||.+.
T Consensus 73 ---~~v~~~t~~el~~l~~----~~~~~~~------~~~--~~~~~~~~iptL~evl~~~~~~~~l~iEiK~~~------ 131 (265)
T cd08564 73 ---KNINDLSLDEITRLHF----KQLFDEK------PCG--ADEIKGEKIPTLEDVLVTFKDKLKYNIELKGRE------ 131 (265)
T ss_pred ---cchhhCcHHHHhhccc----CcccccC------ccc--ccccCCccCCCHHHHHHHhccCcEEEEEeCCCc------
Confidence 8999999999999853 3322111 000 112356899999999999988899999999764
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEecCCH-HHHHHHHHHCCC---CCEEEEecCCCccccccccCCHHHHHHHHHHcCC
Q 021627 201 EELTHALEAILKVVFEHAQGRPIMFSSFQP-DAALLIRKLQST---YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGL 276 (310)
Q Consensus 201 ~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~-~~l~~l~~~~p~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (310)
..+++.+++.++++++.++++|+||++ +.++++++..|+ +++++++...... ......+.++..++
T Consensus 132 ---~~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~ 201 (265)
T cd08564 132 ---VGLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP-------SPLDFLEQAKYYNA 201 (265)
T ss_pred ---hhHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc-------ccccHHHHHHhcCC
Confidence 257889999999999999999999999 999999999998 9999998643211 12334566777899
Q ss_pred ceEEecccccccChHHHHHHHHhCCEEEeec
Q 021627 277 QGIVSEVRAIFKNPGAIKKIKEAKLCLVSYG 307 (310)
Q Consensus 277 ~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwT 307 (310)
.++.+++..+ ++++|+.+|++|+.|++||
T Consensus 202 ~~v~~~~~~~--~~~~v~~~~~~Gl~v~~wT 230 (265)
T cd08564 202 TWVNFSYDFW--TEEFVKKAHENGLKVMTYF 230 (265)
T ss_pred ceeeechhhh--hHHHHHHHHHcCCEEEEec
Confidence 9999887766 9999999999999999999
No 12
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=4.5e-44 Score=320.79 Aligned_cols=225 Identities=16% Similarity=0.166 Sum_probs=172.6
Q ss_pred cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccc-----cc
Q 021627 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-----EK 124 (310)
Q Consensus 50 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~-----~~ 124 (310)
+|+||||||+++ .+||||++||++|++.|+|+||+|||+|+||++||+||.+++|++++++. .+
T Consensus 1 ~~~iiAHRG~~~-----------~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~~ 69 (252)
T cd08574 1 KPALIGHRGAPM-----------LAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAHE 69 (252)
T ss_pred CCeEEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCccccccccc
Confidence 478999999998 79999999999999999999999999999999999999999999998620 01
Q ss_pred cccccCHHHHhccCCCCCCCCCCCcccccc--cCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHH
Q 021627 125 RVTDITLAEFLSYGPQNDPENVGKPMLRKT--KDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEE 201 (310)
Q Consensus 125 ~i~~lt~~el~~l~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~ 201 (310)
.|.++|++||++++ .|+++.+..+.. .......-..+.+++||||+|+|+.++ .++.++||||.+.... .
T Consensus 70 ~v~~~T~~eL~~ld----~g~~f~~~~~~~~~~~~~~~~~~~~~~~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~---~ 142 (252)
T cd08574 70 RASMFTWTDLQQLN----AGQWFLKDDPFWTASSLSESDREEAGNQSIPSLAELLRLAKKHNKSVIFDLRRPPPNH---P 142 (252)
T ss_pred chhcCCHHHHhhCC----CCCcccCCCccchhcccccchhhhcCCCCCCCHHHHHHHHHHcCCeEEEEecCCcccC---c
Confidence 68999999999994 455443211100 000000001246789999999999997 4789999999754210 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEe
Q 021627 202 ELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVS 281 (310)
Q Consensus 202 ~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 281 (310)
....+++.+++.++++++..+++++||+.. ++.+++..|+++++++... .. ......++.++++
T Consensus 143 ~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~-----------~~----~~~~~~~~~~~~~ 206 (252)
T cd08574 143 YYQSYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAPGFQQVSGRKL-----------PV----ESLRENGISRLNL 206 (252)
T ss_pred cHHHHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCCCCeEeecccc-----------ch----HHHHhcCCeEEcc
Confidence 112578899999999998777777666654 7999999999998865321 11 2234578899988
Q ss_pred cccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 282 EVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 282 ~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
++..+ ++++|+.+|++|+.|++|||++
T Consensus 207 ~~~~~--~~~~v~~~~~~g~~v~~WTVn~ 233 (252)
T cd08574 207 EYSQL--SAQEIREYSKANISVNLYVVNE 233 (252)
T ss_pred CcccC--CHHHHHHHHHCCCEEEEEccCC
Confidence 87766 9999999999999999999984
No 13
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=5e-44 Score=328.24 Aligned_cols=223 Identities=18% Similarity=0.256 Sum_probs=170.2
Q ss_pred CCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcccccccc
Q 021627 48 FPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVT 127 (310)
Q Consensus 48 ~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~ 127 (310)
..++.+|||||+++ .+||||++||+.|++.|+|+||+|||+|+||++||+||.+++|+++|+ +.|.
T Consensus 24 ~~~~~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~---g~V~ 89 (300)
T cd08612 24 PFPCRHISHRGGSG-----------ENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGVD---KLVS 89 (300)
T ss_pred CCCCCEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCCCC---cccc
Confidence 56899999999998 799999999999999999999999999999999999999999999998 8999
Q ss_pred ccCHHHHhccCCC----CCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHH
Q 021627 128 DITLAEFLSYGPQ----NDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEEL 203 (310)
Q Consensus 128 ~lt~~el~~l~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~ 203 (310)
++|++||++++.. ...+.++. ....+++||||+|+|+.++ ++.+|||||.+..
T Consensus 90 ~~t~~eL~~l~~~~~~~~~~~~~~~--------------~~~~g~~IPtL~EvL~~~~-~~~lnIEiK~~~~-------- 146 (300)
T cd08612 90 DLNYADLPPYLEKLEVTFSPGDYCV--------------PKGSDRRIPLLEEVFEAFP-DTPINIDIKVEND-------- 146 (300)
T ss_pred cCCHHHHhhccccccccccCCcccc--------------ccCCCCCCCCHHHHHHhCC-CCeEEEEECCCch--------
Confidence 9999999998431 11111110 1245789999999999995 6899999997532
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCC----------CccccccccCCHHH--HHHHH
Q 021627 204 THALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGG----------AQTCTDVRRSSLDE--AIKVC 271 (310)
Q Consensus 204 ~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~----------~~~~~~~~~~~l~~--~~~~~ 271 (310)
.+++.++++++++++.++++|+||+++.|+.+++..|++++++++... ..+........... .....
T Consensus 147 -~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (300)
T cd08612 147 -ELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFL 225 (300)
T ss_pred -HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhh
Confidence 478889999999999999999999999999999999999999865320 00000000000000 00001
Q ss_pred HH---------cCCceEEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 272 LA---------GGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 272 ~~---------~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+. .++.....+.. .+++++|+.+|++|+.|++|||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~G~~v~vWTVNd 271 (300)
T cd08612 226 KTYFPKSMSRLNRFVLFLIDWL--LMRPSLFRHLQKRGIQVYGWVLND 271 (300)
T ss_pred hhcccccccccccceecccccc--cCCHHHHHHHHHCCCEEEEeecCC
Confidence 11 12222222233 459999999999999999999985
No 14
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=7.3e-45 Score=326.19 Aligned_cols=223 Identities=18% Similarity=0.173 Sum_probs=167.1
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccC
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt 130 (310)
|++|||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|+|+ +.|.++|
T Consensus 1 p~viaHRG~~~-----------~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~---g~v~~~t 66 (263)
T cd08580 1 PLIVAHRGGTA-----------DAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGS---GAVSAYT 66 (263)
T ss_pred CeEEEcCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCC---CChhhCc
Confidence 57999999998 899999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHH
Q 021627 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (310)
Q Consensus 131 ~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~v 210 (310)
++||+++ +.|+++.+... . .....+++||||+|+|+.++. +.++||||.+.. ..+++.+
T Consensus 67 ~~el~~l----d~g~~~~~~~~-----~---~~~~~~~~iPtL~evl~~~~~-~~l~iEiK~~~~--------~~~~~~v 125 (263)
T cd08580 67 AAQLATL----NAGYNFKPEGG-----Y---PYRGKPVGIPTLEQVLRAFPD-TPFILDMKSLPA--------DPQAKAV 125 (263)
T ss_pred HHHHhcC----CCccccccccC-----c---ccCCCCCcCccHHHHHHhhcC-CeEEEEECCCCc--------HHHHHHH
Confidence 9999999 45554432110 0 001234689999999999975 889999997642 1578899
Q ss_pred HHHHHHhcCCCCEEEecCCHHHHHHHHHHCCC-------CCEEEEecCCCcccc-cccc------CCHHHHHHHHH--Hc
Q 021627 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQST-------YPVFFLTNGGAQTCT-DVRR------SSLDEAIKVCL--AG 274 (310)
Q Consensus 211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~-------~~~~~l~~~~~~~~~-~~~~------~~l~~~~~~~~--~~ 274 (310)
+++++++++.++++|+||+++.++.+++..|+ ++++++......... .... ..+...++.+. ..
T Consensus 126 ~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T cd08580 126 ARVLERENAWSRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTL 205 (263)
T ss_pred HHHHHhcCCCCCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheeeecc
Confidence 99999999999999999999999999999994 445544321100000 0000 00000011111 13
Q ss_pred CCceEEecccccccChHHHHHHHHh-CCEEEeecCCC
Q 021627 275 GLQGIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELK 310 (310)
Q Consensus 275 ~~~~i~~~~~~l~~~~~lv~~~~~~-Gl~v~vwTv~n 310 (310)
++..+..++. +.++++|+.+|++ |+.|++|||++
T Consensus 206 ~~~~~~~~~~--l~t~~~V~~~h~~~gl~V~~WTVN~ 240 (263)
T cd08580 206 GEGRSPVQAT--LWTPAAVDCFRRNSKVKIVLFGINT 240 (263)
T ss_pred cccccccccc--cCCHHHHHHHHhcCCcEEEEEEeCC
Confidence 4333333334 4599999999999 99999999985
No 15
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=5.9e-44 Score=320.98 Aligned_cols=217 Identities=19% Similarity=0.286 Sum_probs=174.2
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+++++ +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~---g~v~~~t~~ 66 (258)
T cd08573 1 IIGHRGAGH-----------DAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGT---GLVAELTWE 66 (258)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecCCC---ceEecCcHH
Confidence 689999998 799999999999999999999999999999999999999999999987 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl 211 (310)
||++++. |.++.. -..+.+++||||+|+|+.++ .++.++||||.++. .+++.++
T Consensus 67 el~~l~~----~~~~~~------------~~~~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~---------~~~~~v~ 121 (258)
T cd08573 67 ELRKLNA----AAKHRL------------SSRFPGEKIPTLEEAVKECLENNLRMIFDVKSNSS---------KLVDALK 121 (258)
T ss_pred HHhhCCC----CCCCCC------------ccccCCCCCCCHHHHHHHHHhcCCEEEEEeCCCcH---------HHHHHHH
Confidence 9999853 322100 00135689999999999996 47899999997642 5778889
Q ss_pred HHHHHhc-CCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccc----cccC-CHH----HHHH----------HH
Q 021627 212 KVVFEHA-QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTD----VRRS-SLD----EAIK----------VC 271 (310)
Q Consensus 212 ~~l~~~~-~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~----~~~~-~l~----~~~~----------~~ 271 (310)
+.+.+++ +.++++++||+++.++.+++..|++++++++......... .+.. .+. ..+. ..
T Consensus 122 ~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (258)
T cd08573 122 NLFKKYPGLYDKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLP 201 (258)
T ss_pred HHHHHCCCccCCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999998 8899999999999999999999999999997532100000 0000 000 0010 11
Q ss_pred HHcCCceEEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 272 LAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 272 ~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
...|++++.+++..+ ++++|+.+|++|+.|++|||++
T Consensus 202 ~~~~~~~v~~~~~~~--~~~~v~~~~~~G~~v~vWTVn~ 238 (258)
T cd08573 202 YFLGVSALLIHKDDI--SSAYVRYWRARGIRVIAWTVNT 238 (258)
T ss_pred hhcCeeEEEechHhc--CHHHHHHHHHCCCEEEEEecCC
Confidence 346888998888766 9999999999999999999974
No 16
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.1e-43 Score=314.94 Aligned_cols=209 Identities=28% Similarity=0.338 Sum_probs=174.6
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||++|++.|+|+||+||++||||++||+||.++.|++++. +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~---~~i~~~t~~ 66 (233)
T cd08582 1 VIAHRGASA-----------EAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGD---GAVSDLTLA 66 (233)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccCCC---cchhhCCHH
Confidence 689999998 799999999999999999999999999999999999999999999987 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAIL 211 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl 211 (310)
||++++.. .++. ....+++||||+|+|+.++. ++.++||||.+... ..+++.++
T Consensus 67 el~~l~~~----~~~~--------------~~~~~~~iptL~evl~~~~~~~~~l~ieiK~~~~~-------~~~~~~~~ 121 (233)
T cd08582 67 ELRKLDIG----SWKG--------------ESYKGEKVPTLEEYLAIVPKYGKKLFIEIKHPRRG-------PEAEEELL 121 (233)
T ss_pred HHhcCCCC----cccC--------------CCCCCCcCCCHHHHHHHHHhcCceEEEEeCCCccC-------ccHHHHHH
Confidence 99998532 1111 11356899999999999986 89999999975111 25788899
Q ss_pred HHHHHh-cCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccCh
Q 021627 212 KVVFEH-AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290 (310)
Q Consensus 212 ~~l~~~-~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~ 290 (310)
+++.++ .+.++++++||++..++.+++..|++++++++...... ......++..++.++.+++.. ..++
T Consensus 122 ~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~-~~~~ 191 (233)
T cd08582 122 KLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKSPK---------EDPRPLAKSGGAAGLDLSYEK-KLNP 191 (233)
T ss_pred HHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccc---------cchhHHHHhhCceEEcccccc-cCCH
Confidence 999999 46789999999999999999999999999997542210 111124566788888887765 2499
Q ss_pred HHHHHHHHhCCEEEeecCCC
Q 021627 291 GAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 291 ~lv~~~~~~Gl~v~vwTv~n 310 (310)
++++.+|++|++|++||+++
T Consensus 192 ~~v~~~~~~G~~v~~wTvn~ 211 (233)
T cd08582 192 AFIKALRDAGLKLNVWTVDD 211 (233)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 99999999999999999975
No 17
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.5e-43 Score=313.02 Aligned_cols=207 Identities=21% Similarity=0.220 Sum_probs=164.4
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+++++ +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~---~~v~~~t~~ 66 (229)
T cd08581 1 LVAHRGYPA-----------RYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVE---GLLHELEDA 66 (229)
T ss_pred CEeCCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCC---ceeccCCHH
Confidence 689999998 799999999999999999999999999999999999999999999988 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC--cceEEEEeccCCcccccHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ--SVGFNVELKFDDQLVYTEEELTHALEAI 210 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~--~~~l~IEiK~~~~~~~~~~~~~~~v~~v 210 (310)
||++++.. .|.++.+ .+.+++||||+|+|+.++. ++.++||||.+.... ......+..+
T Consensus 67 el~~l~~~--~~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~ 127 (229)
T cd08581 67 ELDSLRVA--EPARFGS--------------RFAGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKV 127 (229)
T ss_pred HHhhcccc--cCccccc--------------ccCCccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHH
Confidence 99998532 2222211 1357899999999999874 789999999764311 1122344555
Q ss_pred HHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccCh
Q 021627 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290 (310)
Q Consensus 211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~ 290 (310)
++.+.. +.++++|+||+++.|+.+++. |.++++++..... ......+...++..+.++.+ + .
T Consensus 128 ~~~~~~--~~~~~~i~SF~~~~l~~~r~~-~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~--~- 189 (229)
T cd08581 128 LRALPA--VAAQRVLISFDYDLLALAKQQ-GGPRTGWVLPDWD-----------DASLAEADELQPDYLFCDKN-L--L- 189 (229)
T ss_pred HHHHHh--ccCCeEEEeCCHHHHHHHHhc-CCCCeEEEeccCC-----------hHHHHHHHhhCCCEEecccc-c--C-
Confidence 444332 567999999999999999999 9999999874311 11124556678888888776 3 3
Q ss_pred HHHHHHHHhCCEEEeecCCC
Q 021627 291 GAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 291 ~lv~~~~~~Gl~v~vwTv~n 310 (310)
+.++.+|++|++|++|||++
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~ 209 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNE 209 (229)
T ss_pred hhhHHHHhCCceEEEEEcCC
Confidence 45889999999999999985
No 18
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=1.3e-43 Score=325.18 Aligned_cols=239 Identities=15% Similarity=0.170 Sum_probs=182.9
Q ss_pred CCCccccccccCCCCCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 34 GVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
+.+++|.-.+... .+.+.||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.++
T Consensus 7 ~~~~~~~~~~~~~-~~~~~IiAHRGa~~-----------~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL 74 (316)
T cd08610 7 GIYSPCIREKETL-GPKPTIIGHRGAPM-----------LAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTL 74 (316)
T ss_pred CCCchhhcccccc-CCCCeEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCcc
Confidence 6778888777766 56788999999998 89999999999999999999999999999999999999999
Q ss_pred cccccCccc-----cccccccCHHHHhccCCCCCCCCCCCcccc--cccCCccccccccCCCCccCHHHHHHhcCC-cce
Q 021627 114 FTKDEGEII-----EKRVTDITLAEFLSYGPQNDPENVGKPMLR--KTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVG 185 (310)
Q Consensus 114 ~r~t~g~~~-----~~~i~~lt~~el~~l~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~iptL~evL~~~~~-~~~ 185 (310)
+|+++|... ++.|.++|++||+++ +.|+++.+..+ ..+.-.-.......+++||||+|+|+.++. ++.
T Consensus 75 ~Rtt~~~~~~~~~~~~~V~~~TlaEL~~l----d~g~wf~~~~~~~~~~~~~~~~~~~~~~e~IPTLeEvL~~~~~~~~~ 150 (316)
T cd08610 75 KRTTNIGEVQPESACENPAFFNWDFLSTL----NAGKWFVKPRPFYNMKPLSEADKERARNQSIPKLSNFLRLAEKENKL 150 (316)
T ss_pred ccccCCCCccccccccchhhCCHHHHhhC----CCCCccCcccccccccccccccccccCCCCCCCHHHHHHHhHhcCce
Confidence 999998521 136999999999999 45555432110 000000000012357899999999999975 789
Q ss_pred EEEEeccCCc-ccccHHHHHHHHHHHHHHH-HHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCC
Q 021627 186 FNVELKFDDQ-LVYTEEELTHALEAILKVV-FEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSS 263 (310)
Q Consensus 186 l~IEiK~~~~-~~~~~~~~~~~v~~vl~~l-~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~ 263 (310)
++||||.+.. ..+. ..+++.+++.+ +++++.+++++ ||+...++.+++..|++++++.... .
T Consensus 151 l~IEIK~~~~~~~~~----~~~~~~v~~~i~~~~~~~~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~-----------~ 214 (316)
T cd08610 151 VIFDLYRPPPKHPYR----HTWIRRVLEVILNEVGIEQHLVL-WLPAHDRQYVQSVAPGFKQHVGRKV-----------P 214 (316)
T ss_pred EEEEeCCCcccCcch----hHHHHHHHHHHHHHcCCCCCEEE-EcCHHHHHHHHHHCcchhhhhcccc-----------c
Confidence 9999997532 1111 24667777776 56788877766 5899999999999999987653211 1
Q ss_pred HHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 264 l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+ ..+...++.++++++..+ ++++|+.+|++|+.|++|||++
T Consensus 215 ~----~~l~~~~~~~l~~~~~~l--~~~~v~~a~~~Gl~V~vWTVNd 255 (316)
T cd08610 215 I----ETLLKNNISILNLAYKKL--FSNDIRDYKAANIHTNVYVINE 255 (316)
T ss_pred H----HHHHHcCCeEEccchhhC--CHHHHHHHHHCCCEEEEECCCC
Confidence 1 234567888998887766 9999999999999999999985
No 19
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=1.6e-43 Score=311.33 Aligned_cols=199 Identities=19% Similarity=0.185 Sum_probs=172.3
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||++|++.|+|+||+||++||||++||+||.++.|+++++ +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~---~~v~~~t~~ 66 (220)
T cd08579 1 IIAHRGVSS-----------NGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVN---KKVWDLTLE 66 (220)
T ss_pred CeeccCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCCC---CChhhCCHH
Confidence 689999998 799999999999999999999999999999999999999999999987 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAIL 211 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl 211 (310)
||++++.. .+ ..+++||||+|+|+.++. ++.++||||.+... ...+++.++
T Consensus 67 el~~l~~~----~~------------------~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~------~~~~~~~v~ 118 (220)
T cd08579 67 ELKKLTIG----EN------------------GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHD------SPDLVEKFV 118 (220)
T ss_pred HHhcCcCc----cC------------------CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCC------CHHHHHHHH
Confidence 99998532 10 235789999999999986 89999999987531 125788899
Q ss_pred HHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChH
Q 021627 212 KVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPG 291 (310)
Q Consensus 212 ~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~ 291 (310)
+.+.++++.++++|+||+++.++.+++..|++++++++..... . +...+++.+.+++..+ +++
T Consensus 119 ~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~--~~~ 181 (220)
T cd08579 119 KLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIG--------N-------LPKTNVDFYSIEYSTL--NKE 181 (220)
T ss_pred HHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccC--------c-------ccccCceEEeeehhhc--CHH
Confidence 9999999989999999999999999999999999998753210 0 2345777888777655 999
Q ss_pred HHHHHHHhCCEEEeecCCC
Q 021627 292 AIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 292 lv~~~~~~Gl~v~vwTv~n 310 (310)
+++.+|++|+.|++||+++
T Consensus 182 ~v~~~~~~G~~v~~wtvn~ 200 (220)
T cd08579 182 FIRQAHQNGKKVYVWTVND 200 (220)
T ss_pred HHHHHHHCCCEEEEEcCCC
Confidence 9999999999999999975
No 20
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.2e-43 Score=315.92 Aligned_cols=229 Identities=22% Similarity=0.253 Sum_probs=176.5
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcccc----ccCcc---cc
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTK----DEGEI---IE 123 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~----t~g~~---~~ 123 (310)
+.||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.++.|+ ++|+. .+
T Consensus 1 ~~iiaHRG~~~-----------~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~~~~ 69 (263)
T cd08567 1 FDLQGHRGARG-----------LLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLPYEG 69 (263)
T ss_pred CceEeccCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcccccC
Confidence 46999999998 79999999999999999999999999999999999999999964 34420 13
Q ss_pred ccccccCHHHHhccCCCCCC-CCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC----cceEEEEeccCCcccc
Q 021627 124 KRVTDITLAEFLSYGPQNDP-ENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ----SVGFNVELKFDDQLVY 198 (310)
Q Consensus 124 ~~i~~lt~~el~~l~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~----~~~l~IEiK~~~~~~~ 198 (310)
+.|+++|++||++++..... .+.+...++ ......+++||||+|+|+.++. ++.++||+|.+.....
T Consensus 70 ~~v~~~t~~el~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~ 141 (263)
T cd08567 70 PALYELTLAEIKQLDVGEKRPGSDYAKLFP--------EQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDI 141 (263)
T ss_pred cchhcCCHHHHHhcCCCccccCcCcccCCC--------ccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccc
Confidence 68999999999998542110 000011111 0011235899999999999985 5899999997654211
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCce
Q 021627 199 TEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQG 278 (310)
Q Consensus 199 ~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (310)
.......+++.++++++++++.++++|+||+++.++.+++..|++++++++..... .. ....++..|+..
T Consensus 142 ~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-------~~---~~~~~~~~~~~~ 211 (263)
T cd08567 142 LHPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL-------GN---LPRAAKKLGADI 211 (263)
T ss_pred cCccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc-------cC---HHHHHHHhCCcE
Confidence 11112468899999999999999999999999999999999999999999854210 01 223456678888
Q ss_pred EEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 279 IVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 279 i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+.+.+..+ ++++++.+|++|+.|++||+++
T Consensus 212 ~~~~~~~~--~~~~i~~~~~~G~~v~vwtvn~ 241 (263)
T cd08567 212 WSPYFTLV--TKELVDEAHALGLKVVPWTVND 241 (263)
T ss_pred Eecchhhc--CHHHHHHHHHCCCEEEEecCCC
Confidence 88776644 9999999999999999999974
No 21
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.5e-43 Score=310.68 Aligned_cols=210 Identities=21% Similarity=0.196 Sum_probs=170.1
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+++|+ +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~---g~v~~~t~~ 66 (235)
T cd08565 1 IAGHRGGRN-----------LWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGT---GAVRDLTLA 66 (235)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccCCC---CceeeccHH
Confidence 689999988 799999999999999999999999999999999999999999999998 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl 211 (310)
||++++. |.+ .+++||||+|+|+.++ .++.++||||.+.... ....+++.++
T Consensus 67 el~~l~~----~~~-------------------~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~----~~~~~~~~v~ 119 (235)
T cd08565 67 ERKALRL----RDS-------------------FGEKIPTLEEVLALFAPSGLELHVEIKTDADGT----PYPGAAALAA 119 (235)
T ss_pred HHhcCCC----CCC-------------------CCCCCCCHHHHHHHhhccCcEEEEEECCCCCCC----ccHHHHHHHH
Confidence 9999843 211 1578999999999996 4789999999764211 1135788999
Q ss_pred HHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChH
Q 021627 212 KVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPG 291 (310)
Q Consensus 212 ~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~ 291 (310)
+.++++++.++++|+||+++.|+.+++. |++++++++......... .. .....+...++.++.++......+++
T Consensus 120 ~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (235)
T cd08565 120 ATLRRHGLLERSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLERLG----GE-LPFLTATALKAHIVAVEQSLLAATWE 193 (235)
T ss_pred HHHHhCCCcCCEEEEECCHHHHHHHHhC-CCCcEEEEeccccccccc----cc-cchhhhhhccCcEEccCcccccCCHH
Confidence 9999999999999999999999999999 999999998532110000 00 00122345677766776654345899
Q ss_pred HHHHHHHhCCEEEeecCCC
Q 021627 292 AIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 292 lv~~~~~~Gl~v~vwTv~n 310 (310)
+++.+|+ |+.|++|||+.
T Consensus 194 ~v~~~~~-g~~v~~WTVn~ 211 (235)
T cd08565 194 LVRAAVP-GLRLGVWTVND 211 (235)
T ss_pred HHHHHhC-CCEEEEEccCC
Confidence 9999974 99999999973
No 22
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.9e-42 Score=321.73 Aligned_cols=248 Identities=21% Similarity=0.208 Sum_probs=181.3
Q ss_pred CCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCC-CccccccCccc----
Q 021627 48 FPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN-FIFTKDEGEII---- 122 (310)
Q Consensus 48 ~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~-~l~r~t~g~~~---- 122 (310)
.+.+++|||||+++ .+||||++||+.|+++|||+||+||++||||++||+||. +++|+|++...
T Consensus 14 ~~~~~iIAHRGasg-----------~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a 82 (356)
T cd08560 14 RKTDFSIGHRGAPL-----------QFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELA 82 (356)
T ss_pred CCCceEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchh
Confidence 36899999999998 899999999999999999999999999999999999996 79999887410
Q ss_pred ------------------cccccccCHHHHhccCCCCCCCCCCCcccccccCCcccccc---ccCCCCccCHHHHHHhcC
Q 021627 123 ------------------EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWK---VEKDTPLCTLQEAFEKVD 181 (310)
Q Consensus 123 ------------------~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~iptL~evL~~~~ 181 (310)
++.|.++|++||++|....+.+..+..+.+.... +.+.|. ...+++||||+|+|++++
T Consensus 83 ~r~~~~~~~g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~IPTL~Evl~lv~ 161 (356)
T cd08560 83 AKCTQPFTPANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQN-GTPDWRTDLYATCGTLMTHKESIALFK 161 (356)
T ss_pred hhccccccccccccccccCcchhhCcHHHHhcCCCccccccccccccccccc-cccccccccccCCCCCCCHHHHHHHHH
Confidence 1379999999999996542212111100000000 000111 124679999999999997
Q ss_pred C-cceEEEEeccCCccc-ccH-HHHHHHHHHHHHHHHHhcCC-CCEEEecCCHHHHHHHHHHCCCCCEEEEe--cCCCcc
Q 021627 182 Q-SVGFNVELKFDDQLV-YTE-EELTHALEAILKVVFEHAQG-RPIMFSSFQPDAALLIRKLQSTYPVFFLT--NGGAQT 255 (310)
Q Consensus 182 ~-~~~l~IEiK~~~~~~-~~~-~~~~~~v~~vl~~l~~~~~~-~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~--~~~~~~ 255 (310)
. ++.++||||.+.... ..+ .....+++.+++.++++++. ++++|+||+++.|+++++..|++++.+++ +... +
T Consensus 162 ~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~-~ 240 (356)
T cd08560 162 SLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDD-T 240 (356)
T ss_pred hcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCc-c
Confidence 4 799999999765411 000 11236889999999999876 79999999999999999999988775554 3211 1
Q ss_pred ccccccCCHHHHHHHHHHcCCceEEeccccc--------ccChHHHHHHHHhCCEEEeecCCC
Q 021627 256 CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------FKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l--------~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
. ++.. .....++.++..++++|.++...+ +...++|+.+|++|++|++|||+|
T Consensus 241 ~-~~~~-~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~ 301 (356)
T cd08560 241 A-DFPA-TWSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLER 301 (356)
T ss_pred c-cccc-cHHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeec
Confidence 0 1111 123445666677888888876543 236799999999999999999953
No 23
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.4e-42 Score=306.69 Aligned_cols=211 Identities=25% Similarity=0.235 Sum_probs=168.7
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccC
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt 130 (310)
..+|||||+++.. +.+||||++||+.|++.|+ +||+|||+|+||++||+||.+++|+++++ +.|.++|
T Consensus 4 ~~~iaHRG~~~~~--------~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~---~~v~~~t 71 (237)
T cd08585 4 DRPIAHRGLHDRD--------AGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTGVE---GRVEELT 71 (237)
T ss_pred CCceECCCCCCCC--------CCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcCCC---CccccCC
Confidence 4589999997610 1479999999999999999 89999999999999999999999999987 8999999
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHH
Q 021627 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (310)
Q Consensus 131 ~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~v 210 (310)
++||++++. | ..+++||||+|+|+.++.++.++||||.+... ...+++.+
T Consensus 72 ~~eL~~l~~----~--------------------~~~~~iPtL~evl~~~~~~~~l~iEiK~~~~~------~~~l~~~v 121 (237)
T cd08585 72 AAELRALRL----L--------------------GTDEHIPTLDEVLELVAGRVPLLIELKSCGGG------DGGLERRV 121 (237)
T ss_pred HHHHhcCCC----C--------------------CCCCCCCCHHHHHHHhccCceEEEEEccCCcc------chHHHHHH
Confidence 999999843 1 13578999999999998788999999976431 12577888
Q ss_pred HHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHH----HHHHHHHHcCCceEEeccccc
Q 021627 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLD----EAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~i~~~~~~l 286 (310)
++.+++++ .+++++||+++.++.+++..|++++++++..... ........ .........+++.+.+++..+
T Consensus 122 ~~~l~~~~--~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (237)
T cd08585 122 LAALKDYK--GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSND---EADPAFWNEALLSALFSNLLTRPDFIAYHLDDL 196 (237)
T ss_pred HHHHHhcC--CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcc---cccccchhHHHHHhhhhhhccCCCEEEeChhhC
Confidence 88888764 5899999999999999999999999999854211 00000010 011111234778888877755
Q ss_pred ccChHHHHHHHHh-CCEEEeecCCC
Q 021627 287 FKNPGAIKKIKEA-KLCLVSYGELK 310 (310)
Q Consensus 287 ~~~~~lv~~~~~~-Gl~v~vwTv~n 310 (310)
++++|+.+|++ |+.|++|||+.
T Consensus 197 --~~~~v~~~~~~~G~~v~vWTVnd 219 (237)
T cd08585 197 --PNPFVTLARALLGMPVIVWTVRT 219 (237)
T ss_pred --cCHHHHHHHHhcCCcEEEEeCCC
Confidence 89999999999 99999999984
No 24
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=2.7e-42 Score=316.69 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=178.1
Q ss_pred CCCccccccccCCCCCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 34 GVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
+.-++|.++...+ +..+.||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++
T Consensus 11 ~~~~~~~~~~~~~-~~~~~IIAHRGas~-----------~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL 78 (315)
T cd08609 11 AICSPCIMEENNL-PPKPALVGHRGAPM-----------LAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGL 78 (315)
T ss_pred hccCccccccccc-CCCCeEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcc
Confidence 5667787777665 33579999999998 79999999999999999999999999999999999999999
Q ss_pred cccccCccc-cc----cccccCHHHHhccCCCCCCCCCCCcccccccCCcc---ccccccCCCCccCHHHHHHhcCC-cc
Q 021627 114 FTKDEGEII-EK----RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRI---FEWKVEKDTPLCTLQEAFEKVDQ-SV 184 (310)
Q Consensus 114 ~r~t~g~~~-~~----~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~iptL~evL~~~~~-~~ 184 (310)
+|+++|++. .+ .|.++|++||++++ .|.++.+..+... ++. ..-....+++||||+|+|+.++. ++
T Consensus 79 ~Rtt~~~g~~~~~~~~~V~dlTlaEL~~ld----~g~wf~~~~~~~~-~~~~~~~~~~~~~ge~IPTL~EvL~~~~~~~~ 153 (315)
T cd08609 79 LRTTNVKDVFPGRDAAGSNNFTWTELKTLN----AGSWFLERRPFWT-LSSLSEEDRREADNQTVPSLSELLDLAKKHNV 153 (315)
T ss_pred cccCCCCCCccccccccHhhCCHHHHhhCC----CCcccCccccccc-ccccccccccccCCCCCCCHHHHHHHHHhcCC
Confidence 999998620 01 38999999999994 4554432210000 000 00001357899999999999974 78
Q ss_pred eEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCH
Q 021627 185 GFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSL 264 (310)
Q Consensus 185 ~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l 264 (310)
.+|||||.+... ......+...+++.++++++..+.++ +|+...++.+++..|++++++....
T Consensus 154 ~l~IEIK~~~~~---~~~~~~f~~~vl~~i~~~~~~~~~v~-~~~~~~l~~~~~~~P~~~~~~~~~~------------- 216 (315)
T cd08609 154 SIMFDLRNENNS---HVFYSSFVFYTLETILKLGIPPDKVW-WLPDEYRHDVMKMEPGFKQVYGRQK------------- 216 (315)
T ss_pred EEEEEeCCCCCC---CccHHHHHHHHHHHHHHcCCCcceEE-EeCHHHHHHHHHhCcCceeecccch-------------
Confidence 999999976321 11223678899999999986533333 3578899999999999998754210
Q ss_pred HHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 265 DEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
.....++.++++++..+ ++++|+.+|++|++|++|||+.
T Consensus 217 -----~~~~~~~~~i~~~~~~l--~~~~v~~~~~~G~~v~vWTVNd 255 (315)
T cd08609 217 -----EMLMDGGNFMNLPYQDL--SALEIKELRKDNVSVNLWVVNE 255 (315)
T ss_pred -----hhHhcCCeEEecccccC--CHHHHHHHHHCCCEEEEECCCC
Confidence 01234777888887766 9999999999999999999984
No 25
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=9.9e-43 Score=321.27 Aligned_cols=238 Identities=22% Similarity=0.190 Sum_probs=172.5
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcc---------
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI--------- 121 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~--------- 121 (310)
|+||||||+++ .+||||++||++|++.|+|+||||||+||||++||+||.+++|+|++..
T Consensus 1 ~lviAHRG~s~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (318)
T cd08600 1 KIIIAHRGASG-----------YLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRKD 69 (318)
T ss_pred CeEEEcCCCCC-----------CCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCcccccccccccC
Confidence 68999999998 8999999999999999999999999999999999999999999998431
Q ss_pred ccccccccCHHHHhccCCCCCCCCCCCcc----cccccCCccccccccCCCCccCHHHHHHhcCC-------cceEEEEe
Q 021627 122 IEKRVTDITLAEFLSYGPQNDPENVGKPM----LRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVEL 190 (310)
Q Consensus 122 ~~~~i~~lt~~el~~l~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~IEi 190 (310)
-.+.|.++|++||++++ .|.++.+. .+... ++.. ....+++||||+|+|+.++. ++.++|||
T Consensus 70 g~~~v~dlT~aEL~~ld----~g~~f~~~~~~~~~~~~-~~~~--~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEi 142 (318)
T cd08600 70 GRYYVIDFTLDELKSLS----VTERFDIENGKKVQVYP-NRFP--LWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEI 142 (318)
T ss_pred CceeEeeCcHHHHhhCC----CCCCccccccccccccc-ccCc--ccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEee
Confidence 01569999999999995 44433211 00000 0000 01256799999999998853 68999999
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHhcCC---CCEEEecCCHHHHHHHHH-HCC----CCCEEEEecCCCcccc-c---
Q 021627 191 KFDDQLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRK-LQS----TYPVFFLTNGGAQTCT-D--- 258 (310)
Q Consensus 191 K~~~~~~~~~~~~~~~v~~vl~~l~~~~~~---~~v~~~Sf~~~~l~~l~~-~~p----~~~~~~l~~~~~~~~~-~--- 258 (310)
|.+.... .....+++.++++++++++. .+++|+||+++.|+.+++ ..| ++++++|+........ .
T Consensus 143 K~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (318)
T cd08600 143 KAPWFHH---QEGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDP 219 (318)
T ss_pred cCchhhh---hccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCccccccc
Confidence 9753210 00124788999999999884 489999999999999997 899 9999999852111000 0
Q ss_pred --cccCCHH-----HHHHHHHHcCCceEEeccccc---------ccChHHHHHHHHhCCEEEeecCCC
Q 021627 259 --VRRSSLD-----EAIKVCLAGGLQGIVSEVRAI---------FKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 259 --~~~~~l~-----~~~~~~~~~~~~~i~~~~~~l---------~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+...... ..+..+ ...++++++++..+ ..++++|+.+|++|+.|++|||+|
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~-~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~ 286 (318)
T cd08600 220 GGWVNYDYDWMFTKGGLKEI-AKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRK 286 (318)
T ss_pred CCccccchhhhcCHHHHHHH-HHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccC
Confidence 0000000 011221 23467777777644 124599999999999999999986
No 26
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=1.3e-42 Score=318.41 Aligned_cols=229 Identities=15% Similarity=0.154 Sum_probs=168.2
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccc--------
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~-------- 122 (310)
|+||||||+++ .+||||++||+.|++.|||+||||||+||||++||+||.+++|+|++...
T Consensus 1 p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (302)
T cd08571 1 PLVIARGGASG-----------DYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTY 69 (302)
T ss_pred CeEEeCCCcCC-----------CCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCccccccccccccee
Confidence 68999999998 89999999999999999999999999999999999999999999985310
Q ss_pred -------cc-cccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC--cceEEEEecc
Q 021627 123 -------EK-RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ--SVGFNVELKF 192 (310)
Q Consensus 123 -------~~-~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~--~~~l~IEiK~ 192 (310)
.+ .|.++|++||++++... +.++....+ ......+++||||+|+|+.++. .+.++||||.
T Consensus 70 ~~~~~~~~g~~v~d~T~aeL~~l~~~~--~~~~~~~~~--------~~~~~~~~~IptL~evl~~~~~~~~~~l~iEiK~ 139 (302)
T cd08571 70 VVEGQSTSGIFSFDLTWAEIQTLKPII--SNPFSVLFR--------NPRNDNAGKILTLEDFLTLAKPKSLSGVWINVEN 139 (302)
T ss_pred cccCcccCCeeeeeCCHHHHhhCcccc--cCcccccCC--------CcccCCCCCcCCHHHHHHhhhccCCceEEEEccC
Confidence 02 38999999999995421 111110000 0011245699999999999975 4789999997
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHhcCC---CCEEEecCCHHHHHHHHHHC--CCCCEEEEecCCCccccccccCCHHHH
Q 021627 193 DDQLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRKLQ--STYPVFFLTNGGAQTCTDVRRSSLDEA 267 (310)
Q Consensus 193 ~~~~~~~~~~~~~~v~~vl~~l~~~~~~---~~v~~~Sf~~~~l~~l~~~~--p~~~~~~l~~~~~~~~~~~~~~~l~~~ 267 (310)
+.... .. .-..+++.+++.+.++++. ++++|+||+++.|+.+++.. |.+++++++..... +. . ...
T Consensus 140 ~~~~~-~~-~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~---~~---~-~~~ 210 (302)
T cd08571 140 AAFLA-EH-KGLLSVDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEP---DT---L-LSN 210 (302)
T ss_pred chhhh-hh-ccccHHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcC---CC---C-hhH
Confidence 53210 00 0024778899999999875 79999999999999999999 99999998753211 00 0 111
Q ss_pred HHHHHHcCCceEEecccccc---------cChHHHHHHHHhCCEEEeecCCC
Q 021627 268 IKVCLAGGLQGIVSEVRAIF---------KNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 268 ~~~~~~~~~~~i~~~~~~l~---------~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+... ...+++++++...+. ..+++|+.+|++|++|++||++|
T Consensus 211 l~~~-~~~a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~ 261 (302)
T cd08571 211 LTEI-KKFASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFAN 261 (302)
T ss_pred HHHH-HHhcCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEEEEec
Confidence 1111 113456665554431 12599999999999999999975
No 27
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=1.1e-42 Score=313.98 Aligned_cols=226 Identities=19% Similarity=0.220 Sum_probs=168.4
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccC
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt 130 (310)
|++|||||+++ .+||||++||+.|++.|+|+||+|||+|+||++||+||.+++|+++|+ +.|.++|
T Consensus 1 p~iiaHRG~~~-----------~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~---~~v~~~t 66 (264)
T cd08575 1 PLHIAHRGGAA-----------EFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGS---GLVSDLT 66 (264)
T ss_pred CeEEEeCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCCc---eEEecCC
Confidence 68999999998 799999999999999999999999999999999999999999999997 8999999
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHH
Q 021627 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (310)
Q Consensus 131 ~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~v 210 (310)
++||++++. |.++.+. .|.........+++||||+|+|+.++. +.++||||.+.. ..+++.+
T Consensus 67 ~~el~~l~~----~~~~~~~-----~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~iEiK~~~~--------~~~~~~v 128 (264)
T cd08575 67 YAELPPLDA----GYGYTFD-----GGKTGYPRGGGDGRIPTLEEVFKAFPD-TPINIDIKSPDA--------EELIAAV 128 (264)
T ss_pred HHHHHhccc----CCccccC-----CCCcccccCCCCCcCCcHHHHHHhCCC-CeEEEEECCCCH--------HHHHHHH
Confidence 999999853 3222110 000001112456899999999999975 899999997542 3688899
Q ss_pred HHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccc-----cc-cccCCHH-HHHHHH--------HHcC
Q 021627 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTC-----TD-VRRSSLD-EAIKVC--------LAGG 275 (310)
Q Consensus 211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~-----~~-~~~~~l~-~~~~~~--------~~~~ 275 (310)
+++++++++.++++|+||++++++++++..|+++++++.......+ .. ....... ...... ...+
T Consensus 129 ~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (264)
T cd08575 129 LDLLEKYKREDRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETFTLG 208 (264)
T ss_pred HHHHHhccccceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEeccc
Confidence 9999999999999999999999999999999988766543210000 00 0000000 000000 0112
Q ss_pred CceEEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 276 LQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 276 ~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+.++.+++. +.++++|+.+|++|++|++|||++
T Consensus 209 ~~~~~~~~~--~~~~~~v~~~~~~G~~v~vWTVNd 241 (264)
T cd08575 209 EGASIVAAL--LWWPNLFDHLRKRGIQVYLWVLND 241 (264)
T ss_pred cccchhhhh--hcCHHHHHHHHhcCCcEEEEEECC
Confidence 333444444 349999999999999999999984
No 28
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=1e-41 Score=303.56 Aligned_cols=203 Identities=23% Similarity=0.280 Sum_probs=168.4
Q ss_pred eEEEecCCCCCccCcchhhhcc-cccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccC
Q 021627 52 VVMGHRGSGMNMLQSSDQRMKS-IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (310)
Q Consensus 52 ~iiaHRG~~~~~~~~~~~~~~~-~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt 130 (310)
+||||||+++ . +||||++||++|++.|+|+||+|||+|+||++||+||.+++|+++|+ +.|.++|
T Consensus 1 ~iiaHRG~~~-----------~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~---~~v~~~t 66 (240)
T cd08566 1 LVVAHRGGWG-----------AGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGK---GKVSDLT 66 (240)
T ss_pred CeEecCCCCC-----------CCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCCC---CchhhCc
Confidence 4899999998 6 99999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHH
Q 021627 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (310)
Q Consensus 131 ~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~v 210 (310)
++||++++. +.++ ....+++||||+|+|+.++..+.++||||.+ ..+.+
T Consensus 67 ~~el~~l~~----~~~~---------------~~~~~~~iptL~evl~~~~~~~~l~iEiK~~------------~~~~~ 115 (240)
T cd08566 67 LAEIRKLRL----KDGD---------------GEVTDEKVPTLEEALAWAKGKILLNLDLKDA------------DLDEV 115 (240)
T ss_pred HHHHHhCCc----CCCc---------------CCCCCCCCCCHHHHHHhhhcCcEEEEEECch------------HHHHH
Confidence 999999853 2221 1135789999999999998678999999953 35678
Q ss_pred HHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc-cccC
Q 021627 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA-IFKN 289 (310)
Q Consensus 211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~-l~~~ 289 (310)
++++.++++.++++|+||+++.++.+++..|++++++++..... ............++.++.++... + .
T Consensus 116 ~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~ 185 (240)
T cd08566 116 IALVKKHGALDQVIFKSYSEEQAKELRALAPEVMLMPIVRDAED--------LDEEEARAIDALNLLAFEITFDDLD--L 185 (240)
T ss_pred HHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcc--------hhHHHHhcccccceEEEEEeccccc--c
Confidence 88899999989999999999999999999999999999754211 00000122234566777777654 3 6
Q ss_pred hHHHHHHHHh-CCEEEeecCC
Q 021627 290 PGAIKKIKEA-KLCLVSYGEL 309 (310)
Q Consensus 290 ~~lv~~~~~~-Gl~v~vwTv~ 309 (310)
+..+..++++ |++|++||++
T Consensus 186 ~~~~~~~~~~~Gl~v~~wTvn 206 (240)
T cd08566 186 PPLFDELLRALGIRVWVNTLG 206 (240)
T ss_pred HHHHHHHHHhCCCEEEEECCC
Confidence 7888888888 9999999997
No 29
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=8.7e-42 Score=312.77 Aligned_cols=230 Identities=15% Similarity=0.216 Sum_probs=167.2
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccc--------
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~-------- 122 (310)
|+||||||+++ .+||||++||+.|++.|+|+||||||+||||++||+||.+++|+|++...
T Consensus 1 p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (300)
T cd08604 1 PLIISHNGASG-----------DYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATT 69 (300)
T ss_pred CeEEecCCcCC-----------CCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccc
Confidence 58999999998 89999999999999999999999999999999999999999999988520
Q ss_pred --------cccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-c-ceEEEEecc
Q 021627 123 --------EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-S-VGFNVELKF 192 (310)
Q Consensus 123 --------~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-~-~~l~IEiK~ 192 (310)
...+.++|++||++++... .+.++.. +.........+++||||+|+|+.++. + +.++||||.
T Consensus 70 ~~~~~~~~~~~v~d~t~~eL~~l~~~~-~~~~~~~-------~~~~~~~~~~~~~iptL~Evl~~~~~~~~~~l~iEiK~ 141 (300)
T cd08604 70 VPEIGSTSGIFTFDLTWSEIQTLKPAI-SNPYSVT-------GLFRNPANKNAGKFLTLSDFLDLAKNKSLSGVLINVEN 141 (300)
T ss_pred cccccccCceeeecCcHHHHhhCccCC-cCccccc-------CcCCCcccCCCCCCCCHHHHHHHHHhcCCceEEEEeec
Confidence 0147899999999996421 1111110 00000011235799999999999863 3 589999997
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHhcCC----CCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHH
Q 021627 193 DDQLVYTEEELTHALEAILKVVFEHAQG----RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAI 268 (310)
Q Consensus 193 ~~~~~~~~~~~~~~v~~vl~~l~~~~~~----~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~ 268 (310)
+.... . .....+++.++++++++++. ++++|+||++++|+.+++.. ++++++++..... +. ....+
T Consensus 142 ~~~~~-~-~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~-~~~~~~l~~~~~~---~~----~~~~~ 211 (300)
T cd08604 142 AAYLA-E-KKGLDVVDAVLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI-SYERVYVVDETIR---DA----SDSSI 211 (300)
T ss_pred cchhh-h-ccCccHHHHHHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc-CCceEEEecCccc---cc----ChhHH
Confidence 54210 0 00114788999999999875 68999999999999999988 9999999853211 10 01111
Q ss_pred HHHHHcCCceEEeccccc------cc--ChHHHHHHHHhCCEEEeecCCC
Q 021627 269 KVCLAGGLQGIVSEVRAI------FK--NPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 269 ~~~~~~~~~~i~~~~~~l------~~--~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+.. ...+++++++...+ .. ++++|+.+|++|+.|++|||+|
T Consensus 212 ~~~-~~~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vwTvn~ 260 (300)
T cd08604 212 EEI-KKFADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVEVLRN 260 (300)
T ss_pred HHH-HHhccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEEEecC
Confidence 111 12345666665433 11 3389999999999999999985
No 30
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=2e-41 Score=314.13 Aligned_cols=221 Identities=16% Similarity=0.199 Sum_probs=169.8
Q ss_pred cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccc---
Q 021627 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRV--- 126 (310)
Q Consensus 50 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i--- 126 (310)
+|+||||||+++ .+||||++||++|++.|||+||+|||+|+||++||+||.+++|+|+|. +.+
T Consensus 1 ~p~IIAHRGas~-----------~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~---g~v~~~ 66 (351)
T cd08608 1 KPAIIGHRGAPM-----------LAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVD---RVFPER 66 (351)
T ss_pred CCeEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCC---Cccccc
Confidence 468999999998 899999999999999999999999999999999999999999999987 555
Q ss_pred -----cccCHHHHhccCCCCCCCCCCCcccc--cccCCccccccccCCCCccCHHHHHHhcCC-cceEEEEeccCCcccc
Q 021627 127 -----TDITLAEFLSYGPQNDPENVGKPMLR--KTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVY 198 (310)
Q Consensus 127 -----~~lt~~el~~l~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~iptL~evL~~~~~-~~~l~IEiK~~~~~~~ 198 (310)
+++||+||+++ +.|.++.+..+ ..+...........+++||||+|+|+.++. +..++||||.+....
T Consensus 67 ~~~~~~~~TlaEL~~L----daG~wf~~~~p~~~~~~~~~~~~~~~~ge~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~- 141 (351)
T cd08608 67 QYEDASMFNWTDLERL----NAGQWFLKDDPFWTAQSLSPSDRKEAGNQSVCSLAELLELAKRYNASVLLNLRRPPPNH- 141 (351)
T ss_pred cccccccCCHHHHhhC----CCCcccccCCccccccccccccccccCCCCCCCHHHHHHHHHhcCCeEEEEECCCcccC-
Confidence 67999999999 45555432100 000000000112457899999999999974 688999999753210
Q ss_pred cHHHHHHHHHHHHHHHHHhcCC-CCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCc
Q 021627 199 TEEELTHALEAILKVVFEHAQG-RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQ 277 (310)
Q Consensus 199 ~~~~~~~~v~~vl~~l~~~~~~-~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (310)
.....+++.+++.+.++++. ++++++||+. ++.+++..|+++++... ......++..++.
T Consensus 142 --~~~~~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P~~~~~~~~---------------~~~~~~~~~~~~~ 202 (351)
T cd08608 142 --PYHQSWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAPGFQQTSGE---------------KLPVASLRERGIT 202 (351)
T ss_pred --cchhHHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCCCCeeeccc---------------cchHHHHHHcCCe
Confidence 01125677888888888864 5788888876 47899999999874211 0112345678999
Q ss_pred eEEecccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 278 GIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 278 ~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
++++++..+ ++++|+.+|++|+.|++|||+.
T Consensus 203 ~l~~~~~~l--t~~~v~~~~~~Gl~V~vWTVN~ 233 (351)
T cd08608 203 RLNLRYTQA--SAQEIRDYSASNLSVNLYTVNE 233 (351)
T ss_pred EEccchhhc--CHHHHHHHHHCCCEEEEEecCC
Confidence 999888766 9999999999999999999984
No 31
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=3.1e-41 Score=310.18 Aligned_cols=231 Identities=19% Similarity=0.178 Sum_probs=170.4
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccc--------
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~-------- 122 (310)
|+||||||+++ .+||||++||++|++.|+|+||||||+||||++||+||.+++|++++...
T Consensus 1 p~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~ 69 (309)
T cd08602 1 PLVIAHRGASG-----------YRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKT 69 (309)
T ss_pred CeEEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCcccccccccccc
Confidence 68999999998 89999999999999999999999999999999999999999999987421
Q ss_pred ----------cccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-------cce
Q 021627 123 ----------EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVG 185 (310)
Q Consensus 123 ----------~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-------~~~ 185 (310)
...|.++|++||++++. +.++.+.- ......++||||+|+|+.++. +++
T Consensus 70 ~~~i~~~~~~~~~v~d~t~~eL~~l~~----~~~~~~~~----------~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~ 135 (309)
T cd08602 70 TKTVDGVNVTGWFTEDFTLAELKTLRA----RQRLPYRD----------QSYDGQFPIPTFEEIIALAKAASAATGRTVG 135 (309)
T ss_pred ccccCCcccCCeeeccCCHHHHhhCcc----CCcCcccC----------cccCCCcCcCCHHHHHHHHHhhhhcccccce
Confidence 12399999999999954 22211100 001133589999999999863 589
Q ss_pred EEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCC---CCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCcccccc---
Q 021627 186 FNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDV--- 259 (310)
Q Consensus 186 l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~---~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~--- 259 (310)
++||||.+..... .....+++.++++++++++. ++++|+||++++|+.++++. ++++++++........+.
T Consensus 136 l~iEiK~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~-~~~~~~L~~~~~~~~~~~~~~ 212 (309)
T cd08602 136 IYPEIKHPTYFNA--PLGLPMEDKLLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT-DLPLVQLIDDATIPPQDTPEG 212 (309)
T ss_pred eEEeecCchhccc--ccCCCHHHHHHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh-CCCeEEEecCCCCCccccccc
Confidence 9999996542110 00114788999999999885 59999999999999999999 999999985432100000
Q ss_pred ---ccC--CHHHHHHHHHHcCCceEEeccccc---------ccChHHHHHHHHhCCEEEeecCCC
Q 021627 260 ---RRS--SLDEAIKVCLAGGLQGIVSEVRAI---------FKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 260 ---~~~--~l~~~~~~~~~~~~~~i~~~~~~l---------~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
... .....++.. ...+.++++++..+ ..++++|+.+|++|+.|++|||++
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~ 276 (309)
T cd08602 213 DSRTYADLTTDAGLKEI-ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRN 276 (309)
T ss_pred CccchhhhcCHHHHHHH-HhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecC
Confidence 000 011112222 23556788776644 225699999999999999999985
No 32
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=1.2e-40 Score=296.28 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=168.1
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcccc-ccCccccccccccCH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTK-DEGEIIEKRVTDITL 131 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~-t~g~~~~~~i~~lt~ 131 (310)
+|||||++.. +.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+ +.|...++.+.++|+
T Consensus 1 ~~aHRG~G~~---------~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~~~~~i~~~t~ 71 (237)
T cd08583 1 LIAHAMGGID---------GKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGLPTSKNTKPLSY 71 (237)
T ss_pred CeeecCCCCC---------CCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCCcccccccCCCH
Confidence 4899998542 378999999999999999999999999999999999999998875 333101268999999
Q ss_pred HHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC--CcceEEEEeccCCcccccHHHHHHHHHH
Q 021627 132 AEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD--QSVGFNVELKFDDQLVYTEEELTHALEA 209 (310)
Q Consensus 132 ~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~--~~~~l~IEiK~~~~~~~~~~~~~~~v~~ 209 (310)
+||+++.. ..+++||||+|+|+.++ .++.++||||.... .....++..
T Consensus 72 ~el~~~~~-------------------------~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~-----~~~~~~~~~ 121 (237)
T cd08583 72 EEFKSKKI-------------------------YGKYTPMDFKDVIDLLKKYPDVYIVTDTKQDDD-----NDIKKLYEY 121 (237)
T ss_pred HHHhhccc-------------------------cCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCc-----ccHHHHHHH
Confidence 99988631 24578999999999996 36899999997532 112356778
Q ss_pred HHHHHHHh--cCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc
Q 021627 210 ILKVVFEH--AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (310)
Q Consensus 210 vl~~l~~~--~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~ 287 (310)
+++.++++ ++.++++|+||+++.|+.+++..|....+++...... .......+.+...++.++++++..+
T Consensus 122 l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~- 193 (237)
T cd08583 122 IVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS-------IRLDEIIAFCYENGIKAVTISKNYV- 193 (237)
T ss_pred HHHHHHhhcccccceeEEEecCHHHHHHHHHhCCCcceeeEeccccc-------cchHHHHHHHHHcCCcEEEechhhc-
Confidence 88888875 4778999999999999999999998766665432110 1223445677788999999988766
Q ss_pred cChHHHHHHHHhCCEEEeecCCC
Q 021627 288 KNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 288 ~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
++++++.+|++|+.|++|||+.
T Consensus 194 -~~~~v~~~~~~Gl~v~vwTVn~ 215 (237)
T cd08583 194 -NDKLIEKLNKAGIYVYVYTIND 215 (237)
T ss_pred -CHHHHHHHHHCCCEEEEEeCCC
Confidence 9999999999999999999974
No 33
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.5e-40 Score=297.80 Aligned_cols=219 Identities=24% Similarity=0.292 Sum_probs=167.8
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++.|+++++ +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~---~~i~~~t~~ 66 (249)
T cd08561 1 VIAHRGGAG-----------LAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGT---GPVADLTLA 66 (249)
T ss_pred CcccCCCCC-----------CCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccCCC---CchhhCCHH
Confidence 689999987 799999999999999999999999999999999999999999999987 899999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILK 212 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~ 212 (310)
||++++....... ..|+... ....++++|||+|+|+.+++ +.++||+|.+. ..+++.+++
T Consensus 67 el~~l~~~~~~~~---------~~~~~~~-~~~~~~~iptL~evl~~~~~-~~~~ieiK~~~---------~~~~~~~~~ 126 (249)
T cd08561 67 ELRRLDAGYHFTD---------DGGRTYP-YRGQGIRIPTLEELFEAFPD-VRLNIEIKDDG---------PAAAAALAD 126 (249)
T ss_pred HHhhcCcCccccC---------ccccccc-cCCCCccCCCHHHHHHhCcC-CcEEEEECCCc---------hhHHHHHHH
Confidence 9999864321100 0010000 11246899999999999974 89999999864 157889999
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccc---ccccC
Q 021627 213 VVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR---AIFKN 289 (310)
Q Consensus 213 ~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~---~l~~~ 289 (310)
.++++++.++++|+||+++++..+++..|+++++++....... .......+ ......++.++.++.. ..+.+
T Consensus 127 ~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 201 (249)
T cd08561 127 LIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAF-VLASRLGL----GSLYSPPYDALQIPVRYGGVPLVT 201 (249)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHH-HHHhhccc----ccccCCCCcEEEcCcccCCeecCC
Confidence 9999999999999999999999999999999998875321100 00000000 0011234455554432 12458
Q ss_pred hHHHHHHHHhCCEEEeecCCC
Q 021627 290 PGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 290 ~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+++++.+|++|+.|++|||++
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~ 222 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVND 222 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCC
Confidence 999999999999999999974
No 34
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=1.6e-40 Score=294.96 Aligned_cols=203 Identities=23% Similarity=0.256 Sum_probs=160.7
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
|+||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.++.|+++++ .+.|+++|++
T Consensus 1 iiAHRG~~~-----------~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~--~~~v~~~t~~ 67 (234)
T cd08570 1 VIGHRGYKA-----------KYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKD--GLIIDDSTWD 67 (234)
T ss_pred CEeCCCCCC-----------CCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCC--CCEeccCCHH
Confidence 689999998 799999999999999999999999999999999999999999999874 1579999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC----CcceEEEEeccCCcccccHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD----QSVGFNVELKFDDQLVYTEEELTHALE 208 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~----~~~~l~IEiK~~~~~~~~~~~~~~~v~ 208 (310)
||++++... ..++++|||+|+|+.++ +++.++||||..... ..+..
T Consensus 68 eL~~l~~~~-----------------------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~-------~~~~~ 117 (234)
T cd08570 68 ELSHLRTIE-----------------------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP-------EILFK 117 (234)
T ss_pred HHhhccccc-----------------------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH-------HHHHH
Confidence 999985320 12368999999999985 368999999975421 24556
Q ss_pred HHHHHHHHhc----CCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHc-CCceEEecc
Q 021627 209 AILKVVFEHA----QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG-GLQGIVSEV 283 (310)
Q Consensus 209 ~vl~~l~~~~----~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~~ 283 (310)
.+.+++++++ +.++++|+||+++.++.+++..|+++++++.... .....+.... ++.++.+.+
T Consensus 118 ~v~~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~ 185 (234)
T cd08570 118 LIAEMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSL------------DYARHFLNYSEKLVGISMHF 185 (234)
T ss_pred HHHHHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCH------------HHHHHHhccccccceEEeee
Confidence 6666677764 4579999999999999999999999999986321 1111222212 245555544
Q ss_pred ccc--ccChHHHHHHHHhCCEEEeecCCC
Q 021627 284 RAI--FKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 284 ~~l--~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
..+ ..++++++.+|++|++|++|||+.
T Consensus 186 ~~~~~~~~~~~v~~~~~~gl~v~~wTvn~ 214 (234)
T cd08570 186 VSLWGPFGQAFLPELKKNGKKVFVWTVNT 214 (234)
T ss_pred ehhhcccCHHHHHHHHHCCCEEEEEecCC
Confidence 321 148999999999999999999984
No 35
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=100.00 E-value=2.1e-40 Score=301.15 Aligned_cols=221 Identities=24% Similarity=0.359 Sum_probs=188.1
Q ss_pred hHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHHHHhccCCCCCCCCCCCcccccccCC
Q 021627 78 TILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDG 157 (310)
Q Consensus 78 Tl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~ 157 (310)
+..+|..|.++|||+||+|||+||||+|||+||.++.++ ++. ++|.++|++||+++.. +.++.. ....+
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~~~---~~V~dlTleqL~~l~~----~~~~~~---~~~~~ 85 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-GIK---LLVSDLTAEQLESILD----YSLDDL---NSEIS 85 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-CCc---EEeecCcHHHHhccCC----cccccc---ccccc
Confidence 466899999999999999999999999999999999765 444 8999999999999853 222111 01112
Q ss_pred ccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccc--------cHHHHHHHHHHHHHHHHHhc--------CCC
Q 021627 158 RIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVY--------TEEELTHALEAILKVVFEHA--------QGR 221 (310)
Q Consensus 158 ~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~--------~~~~~~~~v~~vl~~l~~~~--------~~~ 221 (310)
....|....++++|||+|+|+.++.++++|||||+|...+. ...++|.+++.|++.+.++. ..|
T Consensus 86 ~~~~~~~~~~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~har~~~~~~~~~R 165 (300)
T cd08578 86 DMVDLKRLLSSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFDHARYLRHTPGSTR 165 (300)
T ss_pred ccchhhhhcCCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHHHhhhhcccCCCCC
Confidence 22334456688999999999999989999999999986421 23468999999999999985 468
Q ss_pred CEEEecCCHHHHHHHHHHCCCCCEEEEecCCCc-----------------------cccccccCCHHHHHHHHHHcCCce
Q 021627 222 PIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ-----------------------TCTDVRRSSLDEAIKVCLAGGLQG 278 (310)
Q Consensus 222 ~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~~~ 278 (310)
+++|+||+|++|..|+++||+||++|++..+.. .+.+.|..++++|+++|+.+|+.|
T Consensus 166 ~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~~Av~fA~~~nL~G 245 (300)
T cd08578 166 SIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIKEAVRFAKNNNLLG 245 (300)
T ss_pred ceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHHHHHHHHHHcCCcE
Confidence 999999999999999999999999999988753 367788889999999999999999
Q ss_pred EEecccccccChHHHHHHHHhCCEEEeecCC
Q 021627 279 IVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 279 i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
|+++.+.+..+|++|+.+|++|+.+++|+.+
T Consensus 246 iv~~~~~L~~~P~lV~~ik~~GL~lv~~g~~ 276 (300)
T cd08578 246 LILPYSLLNIVPQLVESIKSRGLLLIASGEP 276 (300)
T ss_pred EEecHHHHhhChHHHHHHHHcCCEEEEECCC
Confidence 9999999999999999999999999999975
No 36
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=2e-40 Score=309.17 Aligned_cols=244 Identities=20% Similarity=0.201 Sum_probs=170.4
Q ss_pred CCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcc------
Q 021627 48 FPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI------ 121 (310)
Q Consensus 48 ~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~------ 121 (310)
..+|++|||||+++ .+||||++||++|++.|+|+||||||+|+||++||+||.+++|+|++..
T Consensus 24 ~~~pliiAHRGas~-----------~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~ 92 (355)
T PRK11143 24 SAEKIVIAHRGASG-----------YLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRA 92 (355)
T ss_pred CCCcEEEECCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCccccccccc
Confidence 45899999999998 8999999999999999999999999999999999999999999988321
Q ss_pred ---ccccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-------cceEEEEec
Q 021627 122 ---IEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVELK 191 (310)
Q Consensus 122 ---~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~IEiK 191 (310)
..+.|.++|++||++++.....+......++.... +.. ....+++||||+|+|+.++. ++.++||||
T Consensus 93 ~~~g~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~-~~~--~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK 169 (355)
T PRK11143 93 RKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPG-RFP--MGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIK 169 (355)
T ss_pred ccCCceeEeeCcHHHHhhCCCCCCcccccccccccccc-ccc--ccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEecc
Confidence 01579999999999996432111000000000000 000 01347899999999998863 678999999
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHhcC---CCCEEEecCCHHHHHHHHH-HCCC----CCEEEEecCCCcccc------
Q 021627 192 FDDQLVYTEEELTHALEAILKVVFEHAQ---GRPIMFSSFQPDAALLIRK-LQST----YPVFFLTNGGAQTCT------ 257 (310)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~vl~~l~~~~~---~~~v~~~Sf~~~~l~~l~~-~~p~----~~~~~l~~~~~~~~~------ 257 (310)
.+.... .....+++.+++.+.++++ .++++|+||+++.|+.+++ ..|+ +++++++........
T Consensus 170 ~~~~~~---~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 246 (355)
T PRK11143 170 APWFHH---QEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPD 246 (355)
T ss_pred Cccccc---ccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCccccccccc
Confidence 853211 1112578899999999987 3789999999999999998 6777 588888642110000
Q ss_pred -ccccCCHH-----HHHHHHHHcCCceEEecccccccC----------hHHHHHHHHhCCEEEeecCCC
Q 021627 258 -DVRRSSLD-----EAIKVCLAGGLQGIVSEVRAIFKN----------PGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 258 -~~~~~~l~-----~~~~~~~~~~~~~i~~~~~~l~~~----------~~lv~~~~~~Gl~v~vwTv~n 310 (310)
.+...... ..+... ...+.++++++..+ .+ +++|+.+|++|+.|++|||++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~-~~~a~~i~p~~~~l-~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~ 313 (355)
T PRK11143 247 GKWVNYNYDWMFKPGAMKEV-AKYADGIGPDYHML-VDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRA 313 (355)
T ss_pred CcccccchhhhcChhhHHHH-HhhceeecCChhhe-eeccccCCccChHHHHHHHHHcCCEEEEEEecc
Confidence 00000000 112111 23466777665432 23 389999999999999999974
No 37
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=4.6e-38 Score=284.22 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=158.9
Q ss_pred ceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCC--CEEEEEEEEecCCeEEEecCCCccccccCcc-------
Q 021627 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPL--DFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI------- 121 (310)
Q Consensus 51 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Ga--d~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~------- 121 (310)
|+||||||+++ .+||||++||+.|++.|+ ++||||||+||||++||+||.++.|+|++..
T Consensus 1 plVIAHRGasg-----------~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~ 69 (299)
T cd08603 1 PLVIARGGFSG-----------LFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKK 69 (299)
T ss_pred CeEEecCCCCC-----------CCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccc
Confidence 68999999998 899999999999999998 4799999999999999999999999988621
Q ss_pred ---cc------ccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCC-CccCHHHHHHhcCC-cceEEEEe
Q 021627 122 ---IE------KRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDT-PLCTLQEAFEKVDQ-SVGFNVEL 190 (310)
Q Consensus 122 ---~~------~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~iptL~evL~~~~~-~~~l~IEi 190 (310)
+| +.+.++|++||++++.... ...+ -....++ +||||+|+|+.++. ++.++||+
T Consensus 70 t~~idG~~~~g~~~~d~TlaELk~L~~~~~--~~~r-------------~~~~~g~~~IpTLeEvl~~~~~~gi~i~ie~ 134 (299)
T cd08603 70 TYSVNGVSTKGWFSVDFTLAELQQVTLIQG--IFSR-------------TPIFDGQYPISTVEDVVTLAKPEGLWLNVQH 134 (299)
T ss_pred cccccccccCCceeccCCHHHHhhCCCCCC--cccC-------------CcccCCcCCCCCHHHHHHHhHhcCeEEEEec
Confidence 11 3589999999999964310 0000 0112344 89999999999874 56667776
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHC--CCCCEEE-EecCCC-c-----ccccccc
Q 021627 191 KFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQ--STYPVFF-LTNGGA-Q-----TCTDVRR 261 (310)
Q Consensus 191 K~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~--p~~~~~~-l~~~~~-~-----~~~~~~~ 261 (310)
|..-. ..-..+++.+++.+++++. ++||||+...|+++++.. ++.++.+ +.+... . .|.+...
T Consensus 135 ~~~~~-----~~gl~~~~~l~~~L~~~~~---v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~ 206 (299)
T cd08603 135 DAFYQ-----QHNLSMSSYLLSLSKTVKV---DYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK 206 (299)
T ss_pred HHHHH-----HcCCCHHHHHHHHHHHcCc---EEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH
Confidence 64211 1112478888888888754 899999999999999863 5677765 443211 0 1111111
Q ss_pred CCHHHHHHHHHHcCCc--eEEecc-c-ccccChHHHHHHHHhCCEEEeecCCC
Q 021627 262 SSLDEAIKVCLAGGLQ--GIVSEV-R-AIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 262 ~~l~~~~~~~~~~~~~--~i~~~~-~-~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
.+.++.++|...|.. .|.+.. . .+.....+|+.||++||.|++||..|
T Consensus 207 -~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~ 258 (299)
T cd08603 207 -NLTFIKTFASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFAN 258 (299)
T ss_pred -hHHHHHHHHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeC
Confidence 366666777555543 111111 1 11123479999999999999999976
No 38
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.6e-36 Score=274.72 Aligned_cols=224 Identities=20% Similarity=0.212 Sum_probs=159.5
Q ss_pred CCCcceEEEecCCCCCccC--c---------chhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccc
Q 021627 47 KFPKFVVMGHRGSGMNMLQ--S---------SDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFT 115 (310)
Q Consensus 47 ~~~~~~iiaHRG~~~~~~~--~---------~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r 115 (310)
....|++|||||.+..+-. . -.+....+||||++||++|++.|+|+||+|||+||||++||+||.+++|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 3558999999999764210 0 0122347899999999999999999999999999999999999999999
Q ss_pred cccCccccccccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCc
Q 021627 116 KDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQ 195 (310)
Q Consensus 116 ~t~g~~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~ 195 (310)
+++|+ +.|.++|++||++++. |.++.. ..|+.+++......+||||+|+|+.++ ++.++||||.+..
T Consensus 100 ~T~g~---g~V~dlTlaEL~~Ld~----g~~~~~-----~~g~~~p~~~~~~~~IPTL~EvL~~~~-~~~l~IEiK~~~~ 166 (309)
T cd08613 100 RTDGS---GVTRDHTMAELKTLDI----GYGYTA-----DGGKTFPFRGKGVGMMPTLDEVFAAFP-DRRFLINFKSDDA 166 (309)
T ss_pred ccCCC---CchhhCCHHHHhhCCc----Cccccc-----ccccccccccCCCCCCcCHHHHHHhcC-CCcEEEEeCCCCc
Confidence 99998 8999999999999853 332211 011111111112357999999999997 4889999998643
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCC--HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 196 LVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQ--PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 196 ~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
...+.+.+.+++++.. ++.+.||+ ++.++.++++.|+++++-..... .-...++ .
T Consensus 167 ---------~~~~~v~~~i~~~~~~-r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~~~------------~~~~~~~-~ 223 (309)
T cd08613 167 ---------AEGELLAEKLATLPRK-RLQVLTVYGGDKPIAALRELTPDLRTLSKASMK------------DCLIEYL-A 223 (309)
T ss_pred ---------cHHHHHHHHHHhcCcc-ceEEEEEECCHHHHHHHHHHCCCCceecccchH------------HHHHHHH-h
Confidence 2356778888888875 67777777 88899999999999876221110 0111111 1
Q ss_pred cCC----------ceEEecccc---ccc-ChHHHHHHHHhCCEEEee
Q 021627 274 GGL----------QGIVSEVRA---IFK-NPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 274 ~~~----------~~i~~~~~~---l~~-~~~lv~~~~~~Gl~v~vw 306 (310)
.+- ..+.++.+. +.. ++++++++|++|.+|++|
T Consensus 224 ~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~ 270 (309)
T cd08613 224 LGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILV 270 (309)
T ss_pred hcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEE
Confidence 221 222222221 123 789999999999999999
No 39
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=1e-36 Score=271.77 Aligned_cols=221 Identities=28% Similarity=0.420 Sum_probs=150.8
Q ss_pred ecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHHHHh
Q 021627 56 HRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFL 135 (310)
Q Consensus 56 HRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~ 135 (310)
|||+++ .+||||++||+.|++.|+++||+|||+||||++||+||.++.|++++. +.|.++||+||+
T Consensus 1 HRG~~~-----------~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~---~~i~~~t~~el~ 66 (256)
T PF03009_consen 1 HRGASG-----------NAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGGD---GPISDLTYAELK 66 (256)
T ss_dssp TTTTTT-----------TSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSSTE---SBGGGS-HHHHT
T ss_pred CCCCCC-----------CChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecCCC---ceeccCCHHHHh
Confidence 999998 799999999999999999999999999999999999999999999987 789999999999
Q ss_pred ccC-CCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHh-cCCcceEEEEeccCCcccccHHHHHHHHHHHHHH
Q 021627 136 SYG-PQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEK-VDQSVGFNVELKFDDQLVYTEEELTHALEAILKV 213 (310)
Q Consensus 136 ~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~-~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~ 213 (310)
++. . +......++ .+ .....++||||+|+|+. ...++.++|++|...... ......++..++..
T Consensus 67 ~l~~~----~~~~~~~~~---~~-----~~~~~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~ 132 (256)
T PF03009_consen 67 KLRTL----GSKNSPPFR---GQ-----RIPGKQKIPTLEEVLELCAKVKLNLEIKIKSKDEIK--DPEFLKIVKDIVES 132 (256)
T ss_dssp TSBES----STTTTCGGT---TT-----TSCTCB--EBHHHHHHHHHTTTSEEEEEEEECTTSH--HHHHHHHHHHHHHH
T ss_pred hCccc----ccCCccccc---cc-----ceecccccCcHHHHHHhhhhccceeEEEEeeccccc--chhhcccccccccc
Confidence 995 2 111100000 00 01123679999999999 445788888888754321 11111344444444
Q ss_pred HHHhc------CCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc-
Q 021627 214 VFEHA------QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI- 286 (310)
Q Consensus 214 l~~~~------~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l- 286 (310)
+.... ..++++++||++++++.+++..|++++++++........+ .......+ ..+...+.......
T Consensus 133 ~~~~~~~~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~ 206 (256)
T PF03009_consen 133 VSDILKNSKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPAD---ISLFELYK---FVKCPGFLASVWNYA 206 (256)
T ss_dssp HHHCHHHHHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH----CCHHHHH---HHTTTEEEEEHGGGG
T ss_pred ccccccccccccccccccccCcHHHHHHHHhcCCCceEEEEeccCcccccc---chhhHHHH---hhccccccccccccc
Confidence 44433 5789999999999999999999999999998653211110 00112233 33444443333222
Q ss_pred --ccChHHHHHHHHhCCEEEeecCCC
Q 021627 287 --FKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 287 --~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
+.++++|+.+|++|+.|++|||+|
T Consensus 207 ~~~~~~~~v~~~~~~g~~v~~wtvn~ 232 (256)
T PF03009_consen 207 DRLGNPRLVQEAHKAGLKVYVWTVND 232 (256)
T ss_dssp HHCEBHHHHHHHHHTT-EEEEBSB-S
T ss_pred cccccHHHHHHHHHCCCEEEEEecCC
Confidence 225679999999999999999986
No 40
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=1.1e-35 Score=267.42 Aligned_cols=217 Identities=25% Similarity=0.317 Sum_probs=165.0
Q ss_pred cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcccccccccc
Q 021627 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDI 129 (310)
Q Consensus 50 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~l 129 (310)
.+++|||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|++++. +.+.++
T Consensus 5 ~~~iiaHRG~s~-----------~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~~---~~~~~~ 70 (257)
T COG0584 5 MPLIIAHRGASG-----------YAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNGL---GTVRDL 70 (257)
T ss_pred ceEEEeccCcCC-----------CCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhccCc---cccccC
Confidence 689999999998 799999999999999999999999999999999999999999999997 788899
Q ss_pred CHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHH
Q 021627 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEA 209 (310)
Q Consensus 130 t~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~ 209 (310)
|++|+++++ .|.+..+ .. ++.+|+|+|++..+..+++++||||.+...... ...+..
T Consensus 71 ~~~~~~~~~----~~~~~~~--------------~~-~~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~----~~~~~~ 127 (257)
T COG0584 71 TLAELKRLD----AGSFRIP--------------TF-GEEIPTLEELLEATGRKIGLYIEIKSPGFHPQE----GKILAA 127 (257)
T ss_pred ChhhhcCcc----cCcccCC--------------CC-CCccCCHHHHHHHhcccCCeEEEecCCCcccch----hhhHHH
Confidence 999999984 2221111 12 689999999999995589999999997653211 114455
Q ss_pred HHHHHHHhc---CCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCc--cccccccCCHHHHHHHHHHcCCceEEeccc
Q 021627 210 ILKVVFEHA---QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ--TCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (310)
Q Consensus 210 vl~~l~~~~---~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 284 (310)
+++.+.+.. ..++++++||+...+..+++..|.++++++...... .+... ..+... .....++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~--~~l~~~-----~~~~~~~~~~~~ 200 (257)
T COG0584 128 LLALLKRYGGTAADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELP--RALKEV-----ALYADGVGPDWA 200 (257)
T ss_pred HHHHHHHhcccCCCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhcc--chhhHH-----HhhhcccCcccc
Confidence 555555443 467999999999999999999999999999876421 00000 111211 222233343333
Q ss_pred cccc-ChHHHHHHHHhCCEEEeecCCC
Q 021627 285 AIFK-NPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 285 ~l~~-~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
.+.. .+.++..+|..|+.|++||+++
T Consensus 201 ~~~~~~~~~v~~~~~~gl~v~~~tv~~ 227 (257)
T COG0584 201 MLAELLTELVDDAHAAGLKVHVWTVNE 227 (257)
T ss_pred eecccccHHHHHHHhCCCeEEEEecCc
Confidence 2211 2679999999999999999975
No 41
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=1.3e-35 Score=254.09 Aligned_cols=170 Identities=25% Similarity=0.358 Sum_probs=149.3
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
+|||||+++ .+||||++||++|++.|+|+||+||++||||++||+||
T Consensus 1 i~aHRG~~~-----------~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd---------------------- 47 (189)
T cd08556 1 IIAHRGASG-----------EAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD---------------------- 47 (189)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC----------------------
Confidence 589999997 78999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILK 212 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~ 212 (310)
+|||+|+|+.+++++.++||+|.+... +.+++.+++
T Consensus 48 -------------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~~-------~~~~~~l~~ 83 (189)
T cd08556 48 -------------------------------------IPTLEEVLELVKGGVGLNIELKEPTRY-------PGLEAKVAE 83 (189)
T ss_pred -------------------------------------CCCHHHHHHhcccCcEEEEEECCCCCc-------hhHHHHHHH
Confidence 468999999998889999999997531 257889999
Q ss_pred HHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHH
Q 021627 213 VVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGA 292 (310)
Q Consensus 213 ~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~l 292 (310)
++++++..++++|+||+++.+..+++..|++++++++....... .....+...+++++.+++..+ ++++
T Consensus 84 ~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~ 152 (189)
T cd08556 84 LLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDP---------LLAELARALGADAVNPHYKLL--TPEL 152 (189)
T ss_pred HHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccc---------hhhhHHHhcCCeEEccChhhC--CHHH
Confidence 99999999999999999999999999999999999987543210 011356778999999887765 8999
Q ss_pred HHHHHHhCCEEEeecCCC
Q 021627 293 IKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 293 v~~~~~~Gl~v~vwTv~n 310 (310)
++.+|++|+.|++||+++
T Consensus 153 i~~~~~~g~~v~~wtvn~ 170 (189)
T cd08556 153 VRAAHAAGLKVYVWTVND 170 (189)
T ss_pred HHHHHHcCCEEEEEcCCC
Confidence 999999999999999975
No 42
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.97 E-value=1.8e-30 Score=221.28 Aligned_cols=149 Identities=24% Similarity=0.276 Sum_probs=119.5
Q ss_pred EEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHH
Q 021627 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (310)
Q Consensus 53 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~ 132 (310)
++||||+++ .+||||++||+.|++.|+++||+||++|+||++||+||.+++|++.
T Consensus 1 iiaHRG~~~-----------~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~-------------- 55 (179)
T cd08555 1 VLSHRGYSQ-----------NGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA-------------- 55 (179)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC--------------
Confidence 589999988 7999999999999999999999999999999999999999977652
Q ss_pred HHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcCC-------cceEEEEeccCCcccccHHHHHH
Q 021627 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVELKFDDQLVYTEEELTH 205 (310)
Q Consensus 133 el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~IEiK~~~~~~~~~~~~~~ 205 (310)
++++|||+|+|+.++. .+.++||+|.+... + ..
T Consensus 56 ----------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~-~-----~~ 95 (179)
T cd08555 56 ----------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPE-Y-----DE 95 (179)
T ss_pred ----------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCc-c-----hH
Confidence 1569999999999875 68999999976531 1 25
Q ss_pred HHHHHHHHHHHhc---CCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 206 ALEAILKVVFEHA---QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 206 ~v~~vl~~l~~~~---~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
+..++++.+++++ +.++++++|| ..+ +. .. ..+. .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~i~sf-----------------~~~---~~---------~~---------~~~~----~ 133 (179)
T cd08555 96 FLAKVLKELRVYFDYDLRGKVVLSSF-----------------NAL---GV---------DY---------YNFS----S 133 (179)
T ss_pred HHHHHHHHHHHcCCcccCCCEEEEee-----------------ccc---CC---------Ch---------hccc----c
Confidence 6788889999887 7889999999 000 00 00 0000 0
Q ss_pred ccccccChHHHHHHHHhCCEEEeecCCC
Q 021627 283 VRAIFKNPGAIKKIKEAKLCLVSYGELK 310 (310)
Q Consensus 283 ~~~l~~~~~lv~~~~~~Gl~v~vwTv~n 310 (310)
.. ..++++|+.+|++|+.|++||++.
T Consensus 134 ~~--~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 134 KL--IKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred hh--hcCHHHHHHHHHCCCEEEEEeeCC
Confidence 12 348999999999999999999973
No 43
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.90 E-value=1.3e-22 Score=171.65 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=108.3
Q ss_pred chHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHHHHhccCCCCCCCCCCCcccccccC
Q 021627 77 NTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKD 156 (310)
Q Consensus 77 NTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~ 156 (310)
||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 7 NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~------------------------------------------ 41 (192)
T cd08584 7 NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK------------------------------------------ 41 (192)
T ss_pred HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC------------------------------------------
Confidence 799999999999 9999999999 9999999998762
Q ss_pred CccccccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHH
Q 021627 157 GRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLI 236 (310)
Q Consensus 157 ~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l 236 (310)
++|||+|+|+.++ +..++||||.. .+++++++++.+++..++++|+||++..+.++
T Consensus 42 ------------~~PtLeEvL~~~~-~~~l~inIK~~-----------~l~~~l~~li~~~~~~~~vi~ssf~~~~l~~~ 97 (192)
T cd08584 42 ------------NGELLEDWLKEYN-HGTLILNIKAE-----------GLELRLKKLLAEYGITNYFFLDMSVPDIIKYL 97 (192)
T ss_pred ------------CCCCHHHHHHhcc-cccEEEEECch-----------hHHHHHHHHHHhcCCcceEEEEcCCHHHHHHH
Confidence 3689999999996 55699999953 47788999999999999999999999999999
Q ss_pred HHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc-cccccChHHHHHHHHhCCEEEe
Q 021627 237 RKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV-RAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 237 ~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~-~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+.-.+++.+..--... ....... ...+++|=++. .....+++.+++..++|++++.
T Consensus 98 ~~~~~~i~tr~Se~E~-----------~~~~~~~--~~~~~~VW~D~f~~~~~~~~~~~~~~~~~~~~c~ 154 (192)
T cd08584 98 ENGEKRTATRVSEYEP-----------IPTALSL--YEKADWVWIDSFTSLWLDNDLILKLLKAGKKICL 154 (192)
T ss_pred hcCCCeeEEeeccccc-----------chHHHHh--hccccEEEEecccccCCCHHHHHHHHHCCcEEEE
Confidence 8755444443321110 0111000 11233333332 1223488888888888888875
No 44
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.84 E-value=3.5e-21 Score=178.94 Aligned_cols=164 Identities=26% Similarity=0.329 Sum_probs=126.8
Q ss_pred cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCcccccccccc
Q 021627 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDI 129 (310)
Q Consensus 50 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~l 129 (310)
...+++|||+++ .+||||++||++|++.|+|.||+||++|+||++|++||.+..|+++.+ ..+.++
T Consensus 68 ~~~i~~~rga~g-----------~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~---~~~~~l 133 (341)
T KOG2258|consen 68 GWLIIAHRGASG-----------DAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVP---EIVFDL 133 (341)
T ss_pred CceeEeccCCCC-----------CCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeecce---eeeccC
Confidence 789999999776 899999999999999999999999999999999999999999998876 679999
Q ss_pred CHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC-CcceEEEEeccCCcccccHHHHHHHHH
Q 021627 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALE 208 (310)
Q Consensus 130 t~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~-~~~~l~IEiK~~~~~~~~~~~~~~~v~ 208 (310)
||.|++++.+...... . .....-.++|+|+|....+- .++.+.-|.|.. ..+..++
T Consensus 134 t~~e~~~l~~~~~~~~----------~-----~~~~~~~~~~~l~e~v~~~~~~n~~~l~d~~~~--------~~~~vl~ 190 (341)
T KOG2258|consen 134 TWMELRKLGPKIENPF----------A-----GPIITLEKLLTLAEAVASVVGNNVAMLNDVKLL--------VVDKVLE 190 (341)
T ss_pred CHHHHhccCccccCcc----------c-----ccccchhhhccHHHHHHHHHcCChhhhhhhhhh--------hHHHHHH
Confidence 9999999965422111 0 11124478999999999875 366666666610 0123444
Q ss_pred HHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEec
Q 021627 209 AILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTN 250 (310)
Q Consensus 209 ~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~ 250 (310)
.+.+...+..+.++++++||++.++.++++..|.+.+...+.
T Consensus 191 ~l~~~~~~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~ 232 (341)
T KOG2258|consen 191 ALKNATSDFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWR 232 (341)
T ss_pred HHHHHhcCCCccceEEEEecCcHHHHHhccCCceEEecceec
Confidence 554544455567789999999999999999888855554443
No 45
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.27 E-value=3e-11 Score=106.48 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=69.8
Q ss_pred HHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHHHHhccCCCCCCCCCCCcccccccCCcccc
Q 021627 82 FNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161 (310)
Q Consensus 82 f~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~ 161 (310)
|..|++.||++||.||+++ ||+++|.||....+. + ..+.+|++++|.++-...
T Consensus 15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~-~-----~tl~~Lyl~pL~~~l~~~-------------------- 67 (228)
T cd08577 15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSP-A-----RTLESLYLDPLLEILDQN-------------------- 67 (228)
T ss_pred hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCc-c-----CCHHHHhHHHHHHHHHHc--------------------
Confidence 7889999999999999999 999999999998766 2 569999999998862110
Q ss_pred ccccCCCCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCC
Q 021627 162 WKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG 220 (310)
Q Consensus 162 ~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~ 220 (310)
+.... ......+.|+||||...... -.++.++++.+++.+..
T Consensus 68 -----n~~~~------~~~~~~l~LlIDiKt~g~~t------~~~l~~~L~~~~~~~~~ 109 (228)
T cd08577 68 -----NGQAY------NDPEQPLQLLIDIKTDGEST------YPALEEVLKPYIDIGYL 109 (228)
T ss_pred -----CCCCC------CCCCCceEEEEEECCCChHH------HHHHHHHHHHHHhcCce
Confidence 00000 22224789999999876422 24677777878777643
No 46
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.91 E-value=7.9e-10 Score=105.42 Aligned_cols=291 Identities=33% Similarity=0.423 Sum_probs=180.8
Q ss_pred CcccceeccCCCCCCCCCCccccccccccccccCCCccccccccCCCCCcceEEEecCCCCCccCcchhhhcccccchHH
Q 021627 1 MALKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTIL 80 (310)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~ 80 (310)
|+++.+.+.+.|.++.. ++. ...+.|..+..........+++|||-+.+...+.+..+...-+|+..
T Consensus 5 l~~~~v~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~~~~~~~~~vg~~~~l 71 (417)
T KOG2421|consen 5 LALLEFEENERLVLEPP------------PVF-LEEGNEDESRSLFSQVAFPVIGHFGVGKNQLLYPDEYVAVVGENSAL 71 (417)
T ss_pred ccccceeeeeeeccCCc------------ccc-cccccccCCccccccccceeecccccceecccCCcceeEeecccccc
Confidence 56677777777766654 111 22233334444444456779999999988777666677789999999
Q ss_pred H-HHHHHhCCCCEEEEEEEEe-cCCe-EEEecCCCccccccCccccccccccCHHHHhc-------------cCCCCCCC
Q 021627 81 S-FNAAARHPLDFIEFDVQVT-RDGC-PVIFHDNFIFTKDEGEIIEKRVTDITLAEFLS-------------YGPQNDPE 144 (310)
Q Consensus 81 A-f~~A~~~Gad~vE~DV~lT-kDg~-~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~-------------l~~~~~~g 144 (310)
+ |..|...++..+|+|++.+ +|++ +|++|+....-.+.+ ....+.+-+++-. .......+
T Consensus 72 g~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (417)
T KOG2421|consen 72 GNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRNIVIEYRYG----ITSEDRTTEQLLEEFLSHGGQRDGIEDEQNRSDG 147 (417)
T ss_pred cccchhhhcCccccchheeeeeccccceeEecccccccccee----eeecCchhhheeeeeecccceeeeeeccccccCC
Confidence 9 9999999999999999999 9999 999998664211111 1111111111100 00000000
Q ss_pred CCCCcccccccCC--------------ccccccc---cCCCCccCHHHHHHhcCC-cceEEEEeccCCcccccHH--HHH
Q 021627 145 NVGKPMLRKTKDG--------------RIFEWKV---EKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEE--ELT 204 (310)
Q Consensus 145 ~~~~~~~~~~~~~--------------~~~~~~~---~~~~~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~--~~~ 204 (310)
...-..++..+.| ....+.. ......-+++++....+. ....+++.|.+....+... ...
T Consensus 148 ~d~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~f~~~~~~~~~q~~l~ 227 (417)
T KOG2421|consen 148 SDVFGLYRGLSEGKRLERGCLRVRLTPAVPKGNVLLSVIDDSFDTLKEVFKPSNSLDLSFVVELKFDDQTPRSEEQYELG 227 (417)
T ss_pred CCcccccccchhhhhhhhhhhheeccccccccccccccccccccchhhhccCCcccceeeeEEeecccCCcccccceeee
Confidence 0000001111111 0111111 134556677888777765 7889999998765432221 111
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccc
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 284 (310)
.....+.+.+...+-...++++||.++.+..++....-+|..++...|.....+.+..+...+...+..+.+.+......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~fs~f~~d~~~~~~~~~y~lP~~~~~~~G~~~l~~~~a~s~~~~~~~~l~~lv~~~~~~~~ 307 (417)
T KOG2421|consen 228 HGFITVFSIVSERGDNRALIFSSFNEDICEELVGYSYVLPSLFLGTGGAELLPDTRASSLREAGQLCLEYLVIGPVSTVG 307 (417)
T ss_pred eEeeeeeeeeccCCccceeeeeccccccchhhhcccccCCcccccCCceeEecchhhccccchhhhhhhhhhcccccccc
Confidence 22223333333444557899999999999999988777888888877765555566667778888888888777665555
Q ss_pred ccccChHHHHHHHHhCCEEEeecC
Q 021627 285 AIFKNPGAIKKIKEAKLCLVSYGE 308 (310)
Q Consensus 285 ~l~~~~~lv~~~~~~Gl~v~vwTv 308 (310)
.+.+++.+++.+++.|+...++..
T Consensus 308 ~~~l~~~~~~~w~~~~~~l~~g~r 331 (417)
T KOG2421|consen 308 PVDLRPSLINYWKKNGLSLNTGHR 331 (417)
T ss_pred ceecChHHhhhhcccchhhhccCC
Confidence 456799999999988876665543
No 47
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.51 E-value=1.1e-08 Score=97.69 Aligned_cols=96 Identities=28% Similarity=0.391 Sum_probs=72.9
Q ss_pred CCCCCccccccccccccccCCCccccccc---cCCCC-CcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCC
Q 021627 15 DQVPGNVTLNYLHSPRVCKGVNEDCDETK---SGYKF-PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPL 90 (310)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Ga 90 (310)
-...+++++-+++..|.+... +|.+.- .+|+. ...+-++|||.+..+-. .....+|||+..+..+.+.|+
T Consensus 287 ~~~~~~~~l~~lv~~~~~~~~--~~~l~~~~~~~w~~~~~~l~~g~rg~g~sy~~----~~~~~~ent~~~~~~~~~~~a 360 (417)
T KOG2421|consen 287 LREAGQLCLEYLVIGPVSTVG--PVDLRPSLINYWKKNGLSLNTGHRGNGTSYTV----LSQVLRENTIVIVDNVLELGA 360 (417)
T ss_pred ccchhhhhhhhhhcccccccc--ceecChHHhhhhcccchhhhccCCcCCchhhh----hhhhhccceeeeehhHHHhhh
Confidence 345677888888877765322 244444 55654 57888999999863211 112689999999999999999
Q ss_pred CEEEEEEEEecCCeEEEecCCCcccc
Q 021627 91 DFIEFDVQVTRDGCPVIFHDNFIFTK 116 (310)
Q Consensus 91 d~vE~DV~lTkDg~~Vv~HD~~l~r~ 116 (310)
|++|+|||+|+|.++|++||..+...
T Consensus 361 d~ve~dvqlt~D~~~vvyh~f~~~~~ 386 (417)
T KOG2421|consen 361 DLVEMDVQLTKDLVPVVYHDFVLLVS 386 (417)
T ss_pred hHHHhhcccccCCceeeeccceeEEe
Confidence 99999999999999999999887644
No 48
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.50 E-value=1.4e-07 Score=82.38 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 114 (310)
..+|||++||+.|++.|+++||+||+-++||+|||+||.++.
T Consensus 26 l~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 26 LSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred cCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 789999999999999999999999999999999999998874
No 49
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=98.44 E-value=5.5e-06 Score=74.10 Aligned_cols=185 Identities=17% Similarity=0.089 Sum_probs=97.1
Q ss_pred chHHHHHHHHhCCCCEEEEEEEEecCCeE-EEecCCCccccccCccccccccccCHHHHhccCCCCCCCCCCCccccccc
Q 021627 77 NTILSFNAAARHPLDFIEFDVQVTRDGCP-VIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTK 155 (310)
Q Consensus 77 NTl~Af~~A~~~Gad~vE~DV~lTkDg~~-Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~ 155 (310)
||++.+..++++||.+||+||...++|.+ ..+||---+ + +. +....-.+.++.+.. +
T Consensus 8 n~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcd-c--~r---~c~~~~~f~~~l~~~----------------r 65 (265)
T cd08576 8 NDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCD-C--FR---GCTAREMFDEILDYR----------------R 65 (265)
T ss_pred ccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccc-c--cc---CCcHHHHHHHHHHHH----------------H
Confidence 78999999999999999999999999987 456653221 1 10 111111111211110 0
Q ss_pred CCccccccccCCCCccCHHHHHHhcCCc-ceEEEEeccCCccccc-HHHHHHHHHHHHHHHHHhcCCCCEEEe--cC---
Q 021627 156 DGRIFEWKVEKDTPLCTLQEAFEKVDQS-VGFNVELKFDDQLVYT-EEELTHALEAILKVVFEHAQGRPIMFS--SF--- 228 (310)
Q Consensus 156 ~~~~~~~~~~~~~~iptL~evL~~~~~~-~~l~IEiK~~~~~~~~-~~~~~~~v~~vl~~l~~~~~~~~v~~~--Sf--- 228 (310)
...-|- ++.+ +.+.+|||.++..... -.....+++++++-..+.+-..|+.+. --
T Consensus 66 -----------~~ttpg-------~~~~l~lv~lDlK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~~ 127 (265)
T cd08576 66 -----------NGTTPG-------FRENLIFVWLDLKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSIT 127 (265)
T ss_pred -----------hcCCCC-------ccceeEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccc
Confidence 000111 1122 5788999998753111 112234555555544443322344432 21
Q ss_pred CHHHHHHHHHHCCC--CC------EEEEecCCCccccccccCCHHHHHHHHHHcC------CceEEecccccccChHHHH
Q 021627 229 QPDAALLIRKLQST--YP------VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGG------LQGIVSEVRAIFKNPGAIK 294 (310)
Q Consensus 229 ~~~~l~~l~~~~p~--~~------~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~i~~~~~~l~~~~~lv~ 294 (310)
+.+.++.++....+ .. +++.+... .++.+..+.....| -+||.-.......++++++
T Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~n---------~~l~~~~~~~~~~~~~h~w~~dGitnC~~~~~~~~~lv~ 198 (265)
T cd08576 128 DSRFFKGIRDRLNSEEAVSGLLDKVGKDFSGN---------EDLEDIRRVYDYGGDGHIWQSDGITNCLEKYRTCARLRE 198 (265)
T ss_pred chHHHHHHHHHHHhcCchhhHHHhhcccccCC---------CChHHHHHHHHhcCcCceecCCCcccccccccccHHHHH
Confidence 35566666654322 21 22222221 13444444444443 2333322221234889999
Q ss_pred HHHHhCC-----EEEeecCCC
Q 021627 295 KIKEAKL-----CLVSYGELK 310 (310)
Q Consensus 295 ~~~~~Gl-----~v~vwTv~n 310 (310)
.+|++|. +|++|||+.
T Consensus 199 ~~~~rd~~g~i~kV~vWTVn~ 219 (265)
T cd08576 199 AIKKRDTPGYLGKVYGWTSDK 219 (265)
T ss_pred HHHHcCCCCcCCeEEEEeCCC
Confidence 9999999 999999974
No 50
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.38 E-value=4e-07 Score=79.20 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 114 (310)
..+|||++||+.|+..|++.||+||+-++||+|||+||.++.
T Consensus 26 l~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 26 FSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred cCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 679999999999999999999999999999999999998874
No 51
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.91 E-value=1.3e-05 Score=71.61 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 114 (310)
..-+-|+++|+.|+..|+++||+||+-++||+|||+|+.++.
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tlt 67 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTLT 67 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCccc
Confidence 456778999999999999999999999999999999998863
No 52
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=97.86 E-value=0.00012 Score=59.44 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
.+.+|+..++..+++.|++++|+||+.++||+++++|+.++
T Consensus 25 ~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 25 LWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 67899999999999999999999999999999999998653
No 53
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=96.93 E-value=0.0011 Score=57.84 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+.|.+++..|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 45678899999999999999999999999999999998776
No 54
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=96.73 E-value=0.002 Score=57.15 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+|+|--.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 26 LLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34567889999999999999999999999999999999876
No 55
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=96.71 E-value=0.002 Score=57.47 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-+.+++..|+..|+..||+|++--.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 45678899999999999999999999999999999999876
No 56
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=96.71 E-value=0.0023 Score=56.10 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
...+-|.+++..|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 45678899999999999999999999999999999998765
No 57
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=96.71 E-value=0.002 Score=57.18 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
...+-|.+++..|+..|+..||+|+|=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 26 LMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 45667899999999999999999999999999999999887
No 58
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=96.70 E-value=0.0021 Score=57.30 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 26 LRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 44567899999999999999999999999999999999887
No 59
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=96.70 E-value=0.0024 Score=56.05 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+||+-..||+|+|+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 26 LSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred cCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 34566789999999999999999999999999999998765
No 60
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=96.66 E-value=0.0023 Score=56.92 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|..++..|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 26 LKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 44567899999999999999999999999999999999877
No 61
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=96.66 E-value=0.0025 Score=56.74 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.++++.|+..|++.||+|+|=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 34566789999999999999999999999999999998776
No 62
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=96.65 E-value=0.0023 Score=57.12 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 114 (310)
..-+-|.+++..|+..|+..||+|++=-.||+|||+|..++.
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt 67 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLT 67 (258)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCccc
Confidence 445678999999999999999999999999999999998763
No 63
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=96.59 E-value=0.0027 Score=56.58 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34567899999999999999999999999999999999876
No 64
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=96.58 E-value=0.0027 Score=56.69 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.++++.|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 45667899999999999999999999999999999999876
No 65
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=96.53 E-value=0.0033 Score=55.25 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34677899999999999999999999999999999998776
No 66
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.46 E-value=0.0034 Score=55.95 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEec--CCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+|+|=-. ||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 34567899999999999999999999865 899999999887
No 67
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.32 E-value=0.0047 Score=55.13 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEec--CCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l~ 114 (310)
..-+-|.+++..|+..|+..||+|+|=-. ||+|||+|..++.
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tlt 69 (258)
T cd08623 26 LAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTMT 69 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCcc
Confidence 34567899999999999999999999876 6899999998763
No 68
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.28 E-value=0.0048 Score=55.14 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEec--CCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l 113 (310)
..-+-|.+++..|+..|+..||+|+|=-. ||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 26 FSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 44667899999999999999999999764 799999999887
No 69
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=96.20 E-value=0.0062 Score=54.34 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecC--CeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRD--GCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkD--g~~Vv~HD~~l~ 114 (310)
..-+-|.+++..|+..|++.||+|++=-.| |+|||+|..++.
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tlt 69 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTMC 69 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCCc
Confidence 345778899999999999999999999885 999999998873
No 70
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=96.11 E-value=0.07 Score=47.45 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEEEec------CCeEEEecCCC
Q 021627 75 KENTILSFNAAARHPLDFIEFDVQVTR------DGCPVIFHDNF 112 (310)
Q Consensus 75 pENTl~Af~~A~~~Gad~vE~DV~lTk------Dg~~Vv~HD~~ 112 (310)
-=|+.+.+..|++..+.++|.||.+-+ +++||+.|-+.
T Consensus 10 avNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~ 53 (244)
T PF10223_consen 10 AVNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPA 53 (244)
T ss_pred ccCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCC
Confidence 458888999999999999999999984 78999999654
No 71
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=95.85 E-value=0.01 Score=53.16 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEec--CCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTk--Dg~~Vv~HD~~l~ 114 (310)
..-+-|.+|+..|+..|+..||+|++=-. |++|||+|..++.
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~t 69 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTMT 69 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCccc
Confidence 45677899999999999999999999763 6899999998873
No 72
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.96 E-value=0.021 Score=57.75 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-|.|++|+.+|+.+|+..||+|.+=-.||.||++|..++
T Consensus 333 lrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 333 LRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred cccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEeccce
Confidence 56899999999999999999999999999999999999886
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.15 E-value=0.046 Score=55.11 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
..-+-|+.+|..|++.|+..||+|++--.+|.|||+|..++
T Consensus 313 l~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 313 LGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred cCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCccc
Confidence 44578999999999999999999999999999999999887
No 74
>PLN02230 phosphoinositide phospholipase C 4
Probab=93.89 E-value=0.06 Score=53.83 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~ 114 (310)
..-+-|.+++.+|+..|+..||+|+|--.+|+|||+|..++.
T Consensus 139 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t 180 (598)
T PLN02230 139 LSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLT 180 (598)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCc
Confidence 445678899999999999999999998888999999998873
No 75
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=93.35 E-value=1.1 Score=36.49 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=31.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCC
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 112 (310)
.+..+.-.++..+++.|+.++|+||+...++.++++|...
T Consensus 23 ~~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~ 62 (146)
T PF00388_consen 23 LWSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGIT 62 (146)
T ss_dssp HHC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTS
T ss_pred cccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCE
Confidence 3456777899999999999999999999999999999644
No 76
>PLN02228 Phosphoinositide phospholipase C
Probab=93.09 E-value=0.11 Score=51.74 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCe-EEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGC-PVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~-~Vv~HD~~l~ 114 (310)
...+-|.+++.+|+..|+..||+|+|=-.||. |||+|..++.
T Consensus 130 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 172 (567)
T PLN02228 130 VNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLT 172 (567)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCccc
Confidence 45677899999999999999999999766676 8999998773
No 77
>PLN02952 phosphoinositide phospholipase C
Probab=92.25 E-value=0.17 Score=50.69 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCC-eEEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDG-CPVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg-~~Vv~HD~~l~ 114 (310)
...+-|.+++.+|+..|+..||+|+|=-.|| .|||+|..++.
T Consensus 147 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 189 (599)
T PLN02952 147 LSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLT 189 (599)
T ss_pred cCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCccc
Confidence 4567789999999999999999999977775 48999998773
No 78
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=91.24 E-value=0.37 Score=43.79 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
.+......++..++..|+.++|+|++..+|+.++++|..+.
T Consensus 31 ~~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 31 VWGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred ccCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 34678889999999999999999999999999999998654
No 79
>PLN02223 phosphoinositide phospholipase C
Probab=90.98 E-value=0.24 Score=48.76 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=33.1
Q ss_pred chHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 77 NTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 77 NTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
-|.+++.+|+..|+..||+|+|--.++.++|.|..++
T Consensus 135 ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tl 171 (537)
T PLN02223 135 YSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNF 171 (537)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCce
Confidence 7899999999999999999999656667889998776
No 80
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.49 E-value=0.31 Score=48.73 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCe-EEEecCCCcc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGC-PVIFHDNFIF 114 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~-~Vv~HD~~l~ 114 (310)
..-+-|.+++.+|+..|+..||+|+|=-.||. ++|+|..++.
T Consensus 127 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt 169 (581)
T PLN02222 127 LSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLT 169 (581)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCccc
Confidence 45677889999999999999999999777765 5799987763
No 81
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=89.32 E-value=1.9 Score=39.97 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=25.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEEEecC
Q 021627 74 IKENTILSFNAAARHPLDFIEFDVQVTRD 102 (310)
Q Consensus 74 ~pENTl~Af~~A~~~Gad~vE~DV~lTkD 102 (310)
..+|+-..+..+++.|+..+|+||+...+
T Consensus 42 ~~~~s~~~i~~QLd~GvR~LELDv~~d~~ 70 (324)
T cd08589 42 GLDYSHPPLADQLDSGVRQLELDVWADPE 70 (324)
T ss_pred cccCCCccHHHHHhhCcceEEEEEeecCC
Confidence 45677789999999999999999998765
No 82
>PRK15452 putative protease; Provisional
Probab=89.12 E-value=23 Score=34.50 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccC
Q 021627 210 ILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN 289 (310)
Q Consensus 210 vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~ 289 (310)
.++.+.+.+. +.++++ |+..+..+++..|++++-.-+.... .-..++++.+.+|++.++++.+. +
T Consensus 81 ~l~~l~~~gv-DgvIV~--d~G~l~~~ke~~p~l~ih~stqlni---------~N~~a~~f~~~lG~~rvvLSrEL---s 145 (443)
T PRK15452 81 DLEPVIAMKP-DALIMS--DPGLIMMVREHFPEMPIHLSVQANA---------VNWATVKFWQQMGLTRVILSREL---S 145 (443)
T ss_pred HHHHHHhCCC-CEEEEc--CHHHHHHHHHhCCCCeEEEEecccC---------CCHHHHHHHHHCCCcEEEECCcC---C
Confidence 3444445543 345553 6999999999999998765543321 12456788899999999887653 5
Q ss_pred hHHHHHHHHh----CCEEEeec
Q 021627 290 PGAIKKIKEA----KLCLVSYG 307 (310)
Q Consensus 290 ~~lv~~~~~~----Gl~v~vwT 307 (310)
-+-|+.++++ .+.+++++
T Consensus 146 l~EI~~i~~~~~~~elEvfVHG 167 (443)
T PRK15452 146 LEEIEEIRQQCPDMELEVFVHG 167 (443)
T ss_pred HHHHHHHHhhCCCCCEEEEEEc
Confidence 5566666533 34788875
No 83
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=84.61 E-value=4.5 Score=36.45 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEee
Q 021627 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vw 306 (310)
..+.++.+++.++++|+++++.... .....++..++.+++.|++|+.+..--+.....+.+.++++|+....-
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Np-----i~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNP-----IFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccH-----HHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEE
Confidence 3567777888889999998875432 122356777888999999998876432223456788888888876543
No 84
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.07 E-value=4.8 Score=36.22 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
.+.++.+|+..+++|+.+++.... .....++..++.+++.|++|+.++---+....++++.++++|+....
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~-----i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNP-----IFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccH-----HhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 355666776678889876654321 11125677888999999999888632222234678888888987765
No 85
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=45 Score=31.41 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc
Q 021627 208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (310)
Q Consensus 208 ~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~ 287 (310)
...++.+.+.|.. .+++ -|+.++..+++..|++|+-+-+.... .-...+++.++.|+.-+++.-..
T Consensus 82 ~~~l~~l~e~GvD-aviv--~Dpg~i~l~~e~~p~l~ih~S~q~~v---------~N~~~~~f~~~~G~~rvVl~rEl-- 147 (347)
T COG0826 82 ERYLDRLVELGVD-AVIV--ADPGLIMLARERGPDLPIHVSTQANV---------TNAETAKFWKELGAKRVVLPREL-- 147 (347)
T ss_pred HHHHHHHHHcCCC-EEEE--cCHHHHHHHHHhCCCCcEEEeeeEec---------CCHHHHHHHHHcCCEEEEeCccC--
Confidence 4445555555543 3444 59999999999999999876654321 12456788899997777665432
Q ss_pred cChHHHHHHHHh----CCEEEeec
Q 021627 288 KNPGAIKKIKEA----KLCLVSYG 307 (310)
Q Consensus 288 ~~~~lv~~~~~~----Gl~v~vwT 307 (310)
+-+-+.+++++ -++|++++
T Consensus 148 -s~~ei~~i~~~~~~veiEvfVhG 170 (347)
T COG0826 148 -SLEEIKEIKEQTPDVEIEVFVHG 170 (347)
T ss_pred -CHHHHHHHHHhCCCceEEEEEec
Confidence 44444444443 24566665
No 86
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=77.22 E-value=7.4 Score=35.13 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
.+.++.+|+ .+++|+.+++.... .....++..++.+++.|++|+.++..-..-..++.+.++++|+....
T Consensus 80 ~~~~~~~r~-~~~~p~vlm~Y~N~-----i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 80 LSILSEVNG-EIKAPIVIFTYYNP-----VLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHhc-CCCCCEEEEecccH-----HHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEE
Confidence 445666664 47888765543321 11125677788889999999888754333345688888888876543
No 87
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=76.51 E-value=7.9 Score=33.44 Aligned_cols=68 Identities=26% Similarity=0.254 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+|.++.++.+++. +++|+ ..|.-.. ....++.....|++.+.++.+......++++.+|++|+++.+
T Consensus 43 ~~g~~~i~~i~~~-~~~~~DvHLMv~~-----------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~Gi 110 (201)
T PF00834_consen 43 TFGPDIIKAIRKI-TDLPLDVHLMVEN-----------PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGI 110 (201)
T ss_dssp -B-HHHHHHHHTT-SSSEEEEEEESSS-----------GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhhc-CCCcEEEEeeecc-----------HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEE
Confidence 6899999999887 66665 2333221 123445567779999998887653234799999999999876
Q ss_pred e
Q 021627 306 Y 306 (310)
Q Consensus 306 w 306 (310)
.
T Consensus 111 a 111 (201)
T PF00834_consen 111 A 111 (201)
T ss_dssp E
T ss_pred E
Confidence 4
No 88
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=75.52 E-value=18 Score=31.75 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=45.9
Q ss_pred ecCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 226 SSFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
.||.+.+++.+|+..++++. ..|.-. ..+..++...+.|++.+.++.+....-.+.++.+|++|+++.
T Consensus 42 ~tfg~~~i~~i~~~~~~~~~dvHLMv~-----------~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~G 110 (220)
T PRK08883 42 LTFGAPICKALRDYGITAPIDVHLMVK-----------PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAG 110 (220)
T ss_pred cccCHHHHHHHHHhCCCCCEEEEeccC-----------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEE
Confidence 37999999999986345553 122111 234445556678999999888754223478899999998775
Q ss_pred e
Q 021627 305 S 305 (310)
Q Consensus 305 v 305 (310)
+
T Consensus 111 l 111 (220)
T PRK08883 111 V 111 (220)
T ss_pred E
Confidence 4
No 89
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.51 E-value=13 Score=33.32 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEE
Q 021627 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v 303 (310)
+.++.+++..+++|+.+++.... ......+..++.+++.|++++.++..-.-...++++.+|++|+..
T Consensus 76 ~~v~~ir~~~~~~plv~m~Y~Np-----i~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIGLLTYYNL-----IFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKP 143 (256)
T ss_pred HHHHHHHhcCCCCCEEEEEeccH-----HhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcE
Confidence 44555554445666554433211 001133555666677777776665432222235666777777653
No 90
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=75.36 E-value=18 Score=31.84 Aligned_cols=68 Identities=19% Similarity=0.109 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+|.+++++.+|+..++++. ..|.-. ..+..++.....|++.|.++++......+.++.+|++|+++.+
T Consensus 47 tfg~~~i~~lr~~~~~~~~dvHLMv~-----------~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~Gl 115 (223)
T PRK08745 47 TIGPMVCQALRKHGITAPIDVHLMVE-----------PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGL 115 (223)
T ss_pred ccCHHHHHHHHhhCCCCCEEEEeccC-----------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeE
Confidence 7899999999986456553 122211 2234455556779999998887532234788999999987653
No 91
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=75.24 E-value=22 Score=33.45 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCC-CCEEEEe
Q 021627 204 THALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQST-YPVFFLT 249 (310)
Q Consensus 204 ~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~-~~~~~l~ 249 (310)
.+|..+ ++.+.+.+ -.++++|||+++++.-.+...+ -|+.|-.
T Consensus 146 ekfa~a-ve~v~~~~--~pv~l~s~dpevmkaaLev~~dqkPllYaA 189 (467)
T COG1456 146 EKFAEA-VEKVAEAG--LPVILCSFDPEVMKAALEVVKDQKPLLYAA 189 (467)
T ss_pred HHHHHH-HHHHHhcC--CcEEEEeCCHHHHHHHHHHhhccCceeeec
Confidence 345444 45556666 4799999999999987766555 6665543
No 92
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=75.04 E-value=45 Score=28.97 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 207 v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
+.+.++.+.+.+.. .+++ -|+..+..+++..|++++..-+.... .-...+++.+..|+..++++.+.
T Consensus 4 ~~~~l~~l~~~g~d-gi~v--~~~g~~~~~k~~~~~~~i~~~~~~nv---------~N~~s~~~~~~~G~~~i~ls~EL- 70 (233)
T PF01136_consen 4 LEKYLDKLKELGVD-GILV--SNPGLLELLKELGPDLKIIADYSLNV---------FNSESARFLKELGASRITLSPEL- 70 (233)
T ss_pred HHHHHHHHHhCCCC-EEEE--cCHHHHHHHHHhCCCCcEEEecCccC---------CCHHHHHHHHHcCCCEEEECccC-
Confidence 44555666666654 3444 38999999999999999876654321 12456778889999999998764
Q ss_pred ccChHHHHHHHHhC----CEEEeec
Q 021627 287 FKNPGAIKKIKEAK----LCLVSYG 307 (310)
Q Consensus 287 ~~~~~lv~~~~~~G----l~v~vwT 307 (310)
+-+-++++.+.. +.+.+++
T Consensus 71 --~~~ei~~i~~~~~~~~~Ev~v~G 93 (233)
T PF01136_consen 71 --SLEEIKEIAENSPGVPLEVIVHG 93 (233)
T ss_pred --CHHHHHHHHHhCCCCeEEEEEeC
Confidence 555555555443 5666665
No 93
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=74.56 E-value=14 Score=33.19 Aligned_cols=121 Identities=14% Similarity=0.064 Sum_probs=64.3
Q ss_pred cCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcC------CCCEEEecCCHHHHHHHHHHCCCCC
Q 021627 171 CTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQ------GRPIMFSSFQPDAALLIRKLQSTYP 244 (310)
Q Consensus 171 ptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~------~~~v~~~Sf~~~~l~~l~~~~p~~~ 244 (310)
..|.+.|+....+..+..|+|..+...- .....--...+...+.++|. .++-+|+. +++.|+.+++. -.+|
T Consensus 33 r~f~~AL~~~~~~~~vIAEvKkaSPS~G-~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G-s~e~L~~v~~~-v~~P 109 (254)
T COG0134 33 RDFYAALKEASGKPAVIAEVKKASPSKG-LIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQG-SFEDLRAVRAA-VDLP 109 (254)
T ss_pred ccHHHHHHhcCCCceEEEEeecCCCCCC-cccccCCHHHHHHHHHHhCCeEEEEecCccccCC-CHHHHHHHHHh-cCCC
Confidence 5688888877678999999998654320 00000112235666666653 34445544 67888888765 3566
Q ss_pred EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccccc--ChHHHHHHHHhCCEEEe
Q 021627 245 VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK--NPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~--~~~lv~~~~~~Gl~v~v 305 (310)
+. ..+ +... ..-+..|+.+|++.|-+-...+-. -+++++.+++.|+.+.+
T Consensus 110 vL--~KD-------FiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LV 161 (254)
T COG0134 110 VL--RKD-------FIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLV 161 (254)
T ss_pred ee--ecc-------CCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEE
Confidence 43 111 1111 112345556666655433332200 13466666666666554
No 94
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.02 E-value=68 Score=30.20 Aligned_cols=87 Identities=11% Similarity=0.160 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HH----HHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PD----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++-.. .+ .+..+.+..+.+|+.+-.+.+. +. +.+..|..
T Consensus 29 e~~~avi~AAee~--~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~---------~~-e~i~~ai~ 96 (347)
T PRK09196 29 EQVQAIMEAADET--DSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGN---------SP-ATCQRAIQ 96 (347)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC---------CH-HHHHHHHH
Confidence 3566666665555 3456666422 22 2233334445688887776653 23 34666788
Q ss_pred cCCceEEeccccc-------------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI-------------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l-------------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 97 ~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 97 LGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSV 139 (347)
T ss_pred cCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999999998865 24778999999999865
No 95
>PLN02591 tryptophan synthase
Probab=73.98 E-value=13 Score=33.29 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+.++.+|+ .+++|+.+++.... .....++..++.|++.|++|+.++---+....++.+.++++|+....
T Consensus 68 ~~~~~~r~-~~~~p~ilm~Y~N~-----i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 68 SMLKEVAP-QLSCPIVLFTYYNP-----ILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHhc-CCCCCEEEEecccH-----HHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 34455553 36677665543221 11124567778888888888887642222244677888888877654
No 96
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=73.43 E-value=7.1 Score=35.19 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+.++.+|+..+++|+.+++... ......++..++.|++.|++|+.++---+-...++.+.++++|+....
T Consensus 76 ~~~~~ir~~~~~~pivlm~Y~N-----~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 76 ELVKEIRKKEPDIPIVLMTYYN-----PIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp HHHHHHHHHCTSSEEEEEE-HH-----HHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhccCCCCCEEEEeecc-----HHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEE
Confidence 3455666566777777665421 111113455666777777777776532222234566667777766543
No 97
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=73.08 E-value=24 Score=31.00 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHCCCCCEE-EEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccccc-ChHHHHHHHHhCCEEE
Q 021627 227 SFQPDAALLIRKLQSTYPVF-FLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK-NPGAIKKIKEAKLCLV 304 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~-~~~lv~~~~~~Gl~v~ 304 (310)
+|.++.++.+++..|++++= .+. .......++.+.+.|++.+.++.+.... -.+.++.+++.|+++.
T Consensus 50 ~~G~~~v~~lr~~~~~~~lDvHLm-----------~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~g 118 (228)
T PTZ00170 50 SFGPPVVKSLRKHLPNTFLDCHLM-----------VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVG 118 (228)
T ss_pred CcCHHHHHHHHhcCCCCCEEEEEC-----------CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEE
Confidence 78899999999987777752 111 1134556677788899998888764321 2467888899998776
Q ss_pred e
Q 021627 305 S 305 (310)
Q Consensus 305 v 305 (310)
+
T Consensus 119 v 119 (228)
T PTZ00170 119 V 119 (228)
T ss_pred E
Confidence 4
No 98
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=72.86 E-value=80 Score=29.23 Aligned_cols=87 Identities=14% Similarity=0.212 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCH-----------HHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQP-----------DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~-----------~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++.... ..+..+.+..+.+|+.+=.+.+. + .+.+..|.+
T Consensus 28 e~~~avi~AAe~~--~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~---------~-~e~i~~ai~ 95 (307)
T PRK05835 28 EMLNAIFEAGNEE--NSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGT---------T-FESCEKAVK 95 (307)
T ss_pred HHHHHHHHHHHHH--CCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCC---------C-HHHHHHHHH
Confidence 4566666665554 44677664221 12233334445689887776653 2 345667788
Q ss_pred cCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 96 ~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 96 AGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSV 131 (307)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 9999999998765 24678999999999865
No 99
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=71.79 E-value=20 Score=30.81 Aligned_cols=60 Identities=25% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
.+.++.+++..|++-++-=+-. + .+.++.+.+.|+++++.+. + ++++++.++++|+.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~-----------~-~e~a~~a~~aGA~FivSP~--~--~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVL-----------T-AEQAEAAIAAGAQFIVSPG--F--DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES-------------S-HHHHHHHHHHT-SEEEESS------HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEecc-----------C-HHHHHHHHHcCCCEEECCC--C--CHHHHHHHHHcCCcccC
Confidence 4556666777787666532211 2 2345667788888888773 3 88888888888887653
No 100
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=70.89 E-value=17 Score=30.79 Aligned_cols=71 Identities=13% Similarity=-0.028 Sum_probs=45.3
Q ss_pred ecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc-cChHHHHHHHHhCCEEE
Q 021627 226 SSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF-KNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~-~~~~lv~~~~~~Gl~v~ 304 (310)
..+..+.++.+++..|++++..-..-. + ......+.+.+.|++++.++..... ...++++.+|+.|+.+.
T Consensus 37 ~~~g~~~i~~i~~~~~~~~i~~~~~v~-----~----~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~ 107 (202)
T cd04726 37 KSEGMEAVRALREAFPDKIIVADLKTA-----D----AGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQ 107 (202)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEEec-----c----ccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEE
Confidence 355688888998887888775432110 0 0112345677889998888765321 12468888898898876
Q ss_pred e
Q 021627 305 S 305 (310)
Q Consensus 305 v 305 (310)
+
T Consensus 108 v 108 (202)
T cd04726 108 V 108 (202)
T ss_pred E
Confidence 4
No 101
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=70.56 E-value=69 Score=30.71 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=49.1
Q ss_pred EecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHH-HHHHHHcCCceEEecccccc-cChHHHHHHHHhCCE
Q 021627 225 FSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEA-IKVCLAGGLQGIVSEVRAIF-KNPGAIKKIKEAKLC 302 (310)
Q Consensus 225 ~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~~~~~~l~-~~~~lv~~~~~~Gl~ 302 (310)
+.+|.+++++.+++..|+.++..=... .+.... ++.+.+.|++.+.++...-. .-.+.++.+|+.|+.
T Consensus 209 ~~~~G~~iVk~Lr~~~~~~~I~~DLK~----------~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gik 278 (391)
T PRK13307 209 IKKFGLEVISKIREVRPDAFIVADLKT----------LDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIY 278 (391)
T ss_pred HHHhCHHHHHHHHHhCCCCeEEEEecc----------cChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCE
Confidence 568999999999998888775432211 112222 55677889999998875431 123588899999998
Q ss_pred EEe
Q 021627 303 LVS 305 (310)
Q Consensus 303 v~v 305 (310)
+.+
T Consensus 279 vgV 281 (391)
T PRK13307 279 SIL 281 (391)
T ss_pred EEE
Confidence 877
No 102
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=70.52 E-value=7.3 Score=27.85 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=23.9
Q ss_pred HHcCCceEEecccccccChHHHHHHHHhCCEEEee
Q 021627 272 LAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 272 ~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vw 306 (310)
...+++.+.++.... +++.|+.+|++|..|++|
T Consensus 23 ~~~~~~v~~iD~~~~--~~~~I~~L~~~G~~vicY 55 (74)
T PF03537_consen 23 PDPDVDVVVIDLFDF--SKEEIARLKAQGKKVICY 55 (74)
T ss_dssp HTSS-SEEEE-SBS----HHHHHHHHHTT-EEEEE
T ss_pred CCCCCCEEEECCccC--CHHHHHHHHHCCCEEEEE
Confidence 346778888887665 889999999999999998
No 103
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=70.32 E-value=82 Score=29.69 Aligned_cols=87 Identities=9% Similarity=0.203 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HH----HHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PD----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++... .+ .+..+.+..+.+|+.+=.+.+. + .+.+..|.+
T Consensus 29 e~~~avi~AAEe~--~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~---------~-~e~i~~Ai~ 96 (347)
T PRK13399 29 EQILAIMEAAEAT--DSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGN---------S-PATCQSAIR 96 (347)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCC---------C-HHHHHHHHh
Confidence 4566666665555 3466666422 11 2233444455688887776653 2 345677788
Q ss_pred cCCceEEeccccc-------------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI-------------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l-------------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 97 ~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 97 SGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred cCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999999998865 23678999999999865
No 104
>PRK08005 epimerase; Validated
Probab=69.06 E-value=28 Score=30.28 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+|.+..++.+++. .++|. ..|.-. ..+..++.....|++.|.++++......+.++.+|++|.++.+
T Consensus 44 tfG~~~i~~l~~~-t~~~~DvHLMv~-----------~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~Gl 111 (210)
T PRK08005 44 TFGMKTIQAVAQQ-TRHPLSFHLMVS-----------SPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGL 111 (210)
T ss_pred ccCHHHHHHHHhc-CCCCeEEEeccC-----------CHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEE
Confidence 7889999999874 34442 122211 2234455556778888888887432223688999999987653
No 105
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=68.07 E-value=8.8 Score=39.81 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 261 RSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+.+++++++.|+..|++.|++-|-.+.-++++.+++.++|+.++.
T Consensus 66 YL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIG 110 (1149)
T COG1038 66 YLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIG 110 (1149)
T ss_pred hccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeC
Confidence 357899999999999999999999888899999999999998753
No 106
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=67.69 E-value=1.1e+02 Score=28.90 Aligned_cols=87 Identities=10% Similarity=0.141 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-----------HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-----------PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-----------~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++-.. ..++..+.+..+.+|+.+=.+.+. ++ +.+..|.+
T Consensus 27 e~~~aii~AAEe~--~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~---------~~-e~i~~Ai~ 94 (347)
T TIGR01521 27 EQMRAIMEAADKT--DSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGN---------SP-ATCQRAIQ 94 (347)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC---------CH-HHHHHHHH
Confidence 3455666655544 3456665422 123333444455689887777653 22 45667788
Q ss_pred cCCceEEeccccc-------------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI-------------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l-------------~~~~~lv~~~~~~Gl~v 303 (310)
.|+++|.++.+.+ ..+.+.++.+|..|..|
T Consensus 95 ~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 95 LGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred cCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999999998864 24778999999999765
No 107
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=66.25 E-value=37 Score=29.40 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCCEEEecCCHHH---HHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccc
Q 021627 208 EAILKVVFEHAQGRPIMFSSFQPDA---ALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (310)
Q Consensus 208 ~~vl~~l~~~~~~~~v~~~Sf~~~~---l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 284 (310)
..+.+.+.+.|.. -+-+..-++.. ++.+++..|++.++- ++- .+ .+.++.+...|+++++.+.-
T Consensus 23 ~~~~~al~~~Gi~-~iEit~~t~~a~~~i~~l~~~~~~~~vGA----GTV-------l~-~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 23 LPLAKALIEGGLR-VLEVTLRTPVALDAIRLLRKEVPDALIGA----GTV-------LN-PEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred HHHHHHHHHcCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEEE----EeC-------CC-HHHHHHHHHcCCCEEECCCC
Confidence 3444555555542 23333333433 455555566544442 211 12 23456667888888876642
Q ss_pred ccccChHHHHHHHHhCCEEEe
Q 021627 285 AIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 285 ~l~~~~~lv~~~~~~Gl~v~v 305 (310)
++++++.++++|+.++.
T Consensus 90 ----~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 90 ----TPELAKHAQDHGIPIIP 106 (204)
T ss_pred ----CHHHHHHHHHcCCcEEC
Confidence 78888888888876654
No 108
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=65.97 E-value=85 Score=28.93 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
+++.++.+++.. ++|+... ++. .+.+++.+..+..|++++.+-- .++.+|.+.+++++
T Consensus 180 ~~~~i~~i~~~~-~ipvi~n--GgI--------~~~~da~~~l~~~gad~VmigR-~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 180 NWDIIARVKQAV-RIPVIGN--GDI--------FSPEDAKAMLETTGCDGVMIGR-GALGNPWLFRQIEQ 237 (319)
T ss_pred hHHHHHHHHHcC-CCcEEEe--CCC--------CCHHHHHHHHHhhCCCEEEECh-hhhhCChHHHHHHH
Confidence 566777777654 3665433 221 2567777777778999988743 44568888777754
No 109
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=64.52 E-value=53 Score=29.48 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCC------CCEEEecCCHHHHHHHHHHCC
Q 021627 168 TPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQS 241 (310)
Q Consensus 168 ~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~------~~v~~~Sf~~~~l~~l~~~~p 241 (310)
.+...|.+.|...+.++.+.-|+|..+...- ......-...+...+.+.|.. ++-+|.. +.+.|..+++..
T Consensus 32 ~~~~~f~~aL~~~~~~~~vIAEiKraSPs~G-~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~G-s~~dL~~v~~~~- 108 (254)
T PF00218_consen 32 PPPRSFKEALRQNEGRISVIAEIKRASPSKG-DIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGG-SLEDLRAVRKAV- 108 (254)
T ss_dssp S-TTHHHHHHHSHTSS-EEEEEE-SEETTTE-ESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHH-HHHHHHHHHHHS-
T ss_pred CCCCCHHHHHhcCCCCCeEEEEeecCCCCCC-ccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCC-CHHHHHHHHHHh-
Confidence 4566788888876678999999997554210 000001133455556666532 2222322 577788888764
Q ss_pred CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccC--hHHHHHHHHhCCEEEe
Q 021627 242 TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN--PGAIKKIKEAKLCLVS 305 (310)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~--~~lv~~~~~~Gl~v~v 305 (310)
++|+.. . |+-... .-+..++..|+++|.+-...+-.. +++++.++..|+.+.+
T Consensus 109 ~~PvL~--K-------DFIid~--~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lV 163 (254)
T PF00218_consen 109 DLPVLR--K-------DFIIDP--YQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALV 163 (254)
T ss_dssp SS-EEE--E-------S---SH--HHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCccc--c-------cCCCCH--HHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEE
Confidence 566643 1 111111 224567888999988766655211 3688889999998875
No 110
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.30 E-value=40 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 267 AIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
.++.+...|+++++.+. + ++++++.++++|+.++
T Consensus 68 ~a~~ai~aGA~FivSP~--~--~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPG--T--TQELLAAANDSDVPLL 101 (201)
T ss_pred HHHHHHHcCCCEEECCC--C--CHHHHHHHHHcCCCEe
Confidence 44666788888888664 3 7888888888887654
No 111
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=64.09 E-value=44 Score=29.94 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHCCCCCEEEEecCCCc-----cccc-cc----cCCHHHHHHHHHHcCCceEEecccccccC--------h
Q 021627 229 QPDAALLIRKLQSTYPVFFLTNGGAQ-----TCTD-VR----RSSLDEAIKVCLAGGLQGIVSEVRAIFKN--------P 290 (310)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~-----~~~~-~~----~~~l~~~~~~~~~~~~~~i~~~~~~l~~~--------~ 290 (310)
.++.+..+|++.|++++.+-+++... .+.. .+ ......++++.+.+|++||-++++....+ .
T Consensus 57 ~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~ 136 (253)
T cd06544 57 TPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIG 136 (253)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCCcCHHHHHHHHH
Confidence 56788899999999998887765332 1111 11 11145678899999999999998864211 2
Q ss_pred HHHHHHHHhCC
Q 021627 291 GAIKKIKEAKL 301 (310)
Q Consensus 291 ~lv~~~~~~Gl 301 (310)
++.+++++.|+
T Consensus 137 ~l~~~l~~~~~ 147 (253)
T cd06544 137 QLITELKNNGV 147 (253)
T ss_pred HHHHHhhhcCC
Confidence 46666666664
No 112
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=63.67 E-value=31 Score=30.53 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=16.5
Q ss_pred ccchHHHHHHHHhCCCCEEEEEE
Q 021627 75 KENTILSFNAAARHPLDFIEFDV 97 (310)
Q Consensus 75 pENTl~Af~~A~~~Gad~vE~DV 97 (310)
+|++....+...+.|+|++|+|+
T Consensus 13 ~~~~~~~~~~l~~~Gad~iel~i 35 (242)
T cd04724 13 LETTLEILKALVEAGADIIELGI 35 (242)
T ss_pred HHHHHHHHHHHHHCCCCEEEECC
Confidence 35666666667777888888885
No 113
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=62.70 E-value=1.3e+02 Score=28.38 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 227 SFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
.|..+..+.+|+.. ++|+...- .- .+.+.+.+....-+++.|.+- +.++.+|.+++++++
T Consensus 275 ~~~~~~~~~ik~~~-~~pvi~~G-~i---------~~~~~~~~~l~~g~~D~V~~g-R~~ladP~l~~k~~~ 334 (370)
T cd02929 275 GHQEPYIKFVKQVT-SKPVVGVG-RF---------TSPDKMVEVVKSGILDLIGAA-RPSIADPFLPKKIRE 334 (370)
T ss_pred cccHHHHHHHHHHC-CCCEEEeC-CC---------CCHHHHHHHHHcCCCCeeeec-hHhhhCchHHHHHHc
Confidence 45566777788753 67765432 11 234555555555568887764 455789999999965
No 114
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=62.52 E-value=34 Score=29.05 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCC-CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc
Q 021627 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA 285 (310)
Q Consensus 207 v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 285 (310)
+..+++.+.+....-+++++.+.+.-.+.+++..| .+.+.++--+ ....+-++...+.-+.+.+-...
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D-----------~~~~~~rfl~~~~P~~~i~~EtE 105 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD-----------FPWAVRRFLDHWRPDLLIWVETE 105 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S-----------SHHHHHHHHHHH--SEEEEES--
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc-----------CHHHHHHHHHHhCCCEEEEEccc
Confidence 34445555554445688898887777777776644 3555443111 23445566677777766665555
Q ss_pred cccChHHHHHHHHhCCEEEe
Q 021627 286 IFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 286 l~~~~~lv~~~~~~Gl~v~v 305 (310)
+ -|.++..+++.|..++.
T Consensus 106 l--WPnll~~a~~~~ip~~L 123 (186)
T PF04413_consen 106 L--WPNLLREAKRRGIPVVL 123 (186)
T ss_dssp ----HHHHHH-----S-EEE
T ss_pred c--CHHHHHHHhhcCCCEEE
Confidence 5 89999999999987753
No 115
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.29 E-value=35 Score=30.21 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc---cccccChHHHHHHHHhCCEEEe
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV---RAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~---~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
++.++.+++ ..++|+.+++.... . .......++.++..|++++.++. +......++++.+|++|+++.+
T Consensus 63 ~~~v~~vr~-~~~~Pl~lM~y~n~-----~-~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 63 WPLLEEVRK-DVSVPIILMTYLED-----Y-VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVF 134 (244)
T ss_pred HHHHHHHhc-cCCCCEEEEEecch-----h-hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 778888885 36788744322111 0 12456667778888999988862 2111134688888999987764
No 116
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.07 E-value=1.3e+02 Score=27.58 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 227 SFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
.++.+.++.+++.. ++|+... ++. .+.+++.+....-+++.|.+. +.++.+|.+++++++
T Consensus 267 ~~~~~~~~~ir~~~-~iPVi~~--Ggi--------~t~~~a~~~l~~g~aD~V~ig-R~~ladP~l~~k~~~ 326 (327)
T cd02803 267 GYFLELAEKIKKAV-KIPVIAV--GGI--------RDPEVAEEILAEGKADLVALG-RALLADPDLPNKARE 326 (327)
T ss_pred chhHHHHHHHHHHC-CCCEEEe--CCC--------CCHHHHHHHHHCCCCCeeeec-HHHHhCccHHHHHhc
Confidence 34556777777764 5776433 221 145556666555578888874 455679999998864
No 117
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=60.78 E-value=49 Score=28.04 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=13.9
Q ss_pred ccchHHHHHHHHhCCCCEEEEE
Q 021627 75 KENTILSFNAAARHPLDFIEFD 96 (310)
Q Consensus 75 pENTl~Af~~A~~~Gad~vE~D 96 (310)
++++....+.+.+.|+|.+|+|
T Consensus 10 ~~~~~~~~~~~~~~g~d~i~~~ 31 (210)
T TIGR01163 10 FARLGEEVKAVEEAGADWIHVD 31 (210)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc
Confidence 4566666666666666666665
No 118
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=59.96 E-value=6.1 Score=23.11 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=15.3
Q ss_pred chHHHHHHHHhCCCCEEEEE
Q 021627 77 NTILSFNAAARHPLDFIEFD 96 (310)
Q Consensus 77 NTl~Af~~A~~~Gad~vE~D 96 (310)
|+-++++.++++|+|+|=.|
T Consensus 8 d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 8 DKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp -SHHHHHHHHHHT-SEEEES
T ss_pred CCHHHHHHHHHcCCCEeeCC
Confidence 56789999999999998544
No 119
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=59.39 E-value=19 Score=27.79 Aligned_cols=92 Identities=12% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccc
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 284 (310)
.+.-++++.+++.|.. -+.+-| +++....-.... ...+....+.. ...+.+.+..++.++..|++.+++-+.
T Consensus 12 eia~r~~ra~r~~Gi~-tv~v~s-~~d~~s~~~~~a---d~~~~~~~~~~---~~~yl~~e~I~~ia~~~g~~~i~pGyg 83 (110)
T PF00289_consen 12 EIAVRIIRALRELGIE-TVAVNS-NPDTVSTHVDMA---DEAYFEPPGPS---PESYLNIEAIIDIARKEGADAIHPGYG 83 (110)
T ss_dssp HHHHHHHHHHHHTTSE-EEEEEE-GGGTTGHHHHHS---SEEEEEESSSG---GGTTTSHHHHHHHHHHTTESEEESTSS
T ss_pred HHHHHHHHHHHHhCCc-ceeccC-chhccccccccc---ccceecCcchh---hhhhccHHHHhhHhhhhcCcccccccc
Confidence 3455666777777653 344444 333332222221 11222222111 112246789999999999999999998
Q ss_pred ccccChHHHHHHHHhCCEEE
Q 021627 285 AIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 285 ~l~~~~~lv~~~~~~Gl~v~ 304 (310)
.+-.+++|.+.+.++|+.+.
T Consensus 84 ~lse~~~fa~~~~~~gi~fi 103 (110)
T PF00289_consen 84 FLSENAEFAEACEDAGIIFI 103 (110)
T ss_dssp TTTTHHHHHHHHHHTT-EES
T ss_pred hhHHHHHHHHHHHHCCCEEE
Confidence 88778999999999999764
No 120
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=58.69 E-value=55 Score=28.91 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc-cChHHHHHHHHhCCEEE
Q 021627 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF-KNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~-~~~~lv~~~~~~Gl~v~ 304 (310)
+|.+.+++.+|+. +++|. ..|.-. ..+..++...+.|++.|.++++... ...+.++.+|++|+++.
T Consensus 45 tfg~~~i~~ir~~-t~~~~DvHLMv~-----------~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaG 112 (229)
T PRK09722 45 TLSPFFVSQVKKL-ASKPLDVHLMVT-----------DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVG 112 (229)
T ss_pred ccCHHHHHHHHhc-CCCCeEEEEEec-----------CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEE
Confidence 7899999999974 45553 122211 1233445556779999998887531 12468899999998765
Q ss_pred e
Q 021627 305 S 305 (310)
Q Consensus 305 v 305 (310)
+
T Consensus 113 l 113 (229)
T PRK09722 113 L 113 (229)
T ss_pred E
Confidence 3
No 121
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=58.56 E-value=1.5e+02 Score=27.15 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecC-------C-----HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSF-------Q-----PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCL 272 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf-------~-----~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 272 (310)
+.++++++...+.+ .+++++-- . ...+..+-+..+ +|+.+=.+.+. + .+.+..+.
T Consensus 29 E~~~AileaA~e~~--sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~-vPV~lHlDHg~---------~-~~~~~~ai 95 (286)
T COG0191 29 ETLQAILEAAEEEK--SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG-VPVALHLDHGA---------S-FEDCKQAI 95 (286)
T ss_pred HHHHHHHHHHHHhC--CCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-CCEEEECCCCC---------C-HHHHHHHH
Confidence 46777887777653 35666521 1 122233334555 89887776653 2 34456677
Q ss_pred HcCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 273 AGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 273 ~~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
+.|+..+.++.+.+ -.+.++++.+|+.|..|
T Consensus 96 ~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsV 132 (286)
T COG0191 96 RAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSV 132 (286)
T ss_pred hcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcE
Confidence 88999999887654 34789999999999765
No 122
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=56.99 E-value=71 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.022 Sum_probs=18.3
Q ss_pred HHHHHHcCCceEEeccccccc-ChHHHHHHHHhCCEEE
Q 021627 268 IKVCLAGGLQGIVSEVRAIFK-NPGAIKKIKEAKLCLV 304 (310)
Q Consensus 268 ~~~~~~~~~~~i~~~~~~l~~-~~~lv~~~~~~Gl~v~ 304 (310)
++.+...|++.+.++...-.. ..++++.+++.|+++.
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~ 106 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQ 106 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEE
Confidence 344455566665555432100 1355666666666554
No 123
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=56.76 E-value=13 Score=33.65 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=30.0
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCC
Q 021627 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (310)
Q Consensus 74 ~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 112 (310)
...|--.++..+++.|++++|+||+.. ++.+.++|-..
T Consensus 39 ~~~nQ~~sI~~QL~~GvR~LdLdv~~~-~~~l~v~Hg~~ 76 (267)
T cd08590 39 LDPNQELSITDQLDLGARFLELDVHWT-TGDLRLCHGGD 76 (267)
T ss_pred eccccCcCHHHHHhhCCcEEEEeeeeC-CCCEEEEccCc
Confidence 344555688999999999999999976 46778888643
No 124
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.49 E-value=28 Score=30.86 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHcCCceEEecccccccCh----HHHHHHHHhCCEEEe
Q 021627 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVS 305 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~~~~l~~~~----~lv~~~~~~Gl~v~v 305 (310)
.+++.++.|+++|++.|-++.-.+.++. ++|+.+++.|++|.+
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 4567778999999999988876654443 689999999998864
No 125
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=56.21 E-value=77 Score=26.98 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHCCC--CCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 229 QPDAALLIRKLQST--YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 229 ~~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
+.+..+.+++..+. ..++++.+. +++++.+.+...++++|.++... +++.++.+++
T Consensus 36 ~~~~a~~l~~~~~~~~~~V~v~vn~-----------~~~~i~~ia~~~~~d~Vqlhg~e---~~~~~~~l~~ 93 (203)
T cd00405 36 SPEQAREIVAALPPFVKRVGVFVNE-----------DLEEILEIAEELGLDVVQLHGDE---SPEYCAQLRA 93 (203)
T ss_pred CHHHHHHHHHhCCCCCcEEEEEeCC-----------CHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHh
Confidence 34555555555555 445554433 45666677777777887776542 4566677665
No 126
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=55.60 E-value=14 Score=38.73 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.5
Q ss_pred chHHHHHHHHhCCCCEEEEEEEE--ecCCeEEEecCCCcc
Q 021627 77 NTILSFNAAARHPLDFIEFDVQV--TRDGCPVIFHDNFIF 114 (310)
Q Consensus 77 NTl~Af~~A~~~Gad~vE~DV~l--TkDg~~Vv~HD~~l~ 114 (310)
.+.+=|++++=.|+..||+|+|= +.|++||+-|..+..
T Consensus 342 sSvEmYRQvLLsGcRCVELDcWdgk~~d~EPvITHG~tm~ 381 (1189)
T KOG1265|consen 342 SSVEMYRQVLLSGCRCVELDCWDGKGEDEEPVITHGFTMT 381 (1189)
T ss_pred chHHHHHHHHHhcCceEEeeeecCCCCCCCceeecccchh
Confidence 37788999999999999999996 458999999998874
No 127
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=54.55 E-value=29 Score=27.78 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.6
Q ss_pred hHHHHHHHHhCCEEEeecC
Q 021627 290 PGAIKKIKEAKLCLVSYGE 308 (310)
Q Consensus 290 ~~lv~~~~~~Gl~v~vwTv 308 (310)
.++|+.+|+.|+.|.+|..
T Consensus 47 ge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHCCCEEEEEEe
Confidence 5899999999999999863
No 128
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.48 E-value=74 Score=27.70 Aligned_cols=81 Identities=20% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCCEEEe--c-CCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc
Q 021627 207 LEAILKVVFEHAQGRPIMFS--S-FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (310)
Q Consensus 207 v~~vl~~l~~~~~~~~v~~~--S-f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 283 (310)
.-.+.+.+.+.|.. -+=+. + .-.+.++.+++..|++.++-=+-. + .+.++.+...|++.++.+.
T Consensus 29 a~~i~~al~~~Gi~-~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl-----------~-~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 29 AVPLAKALVAGGLP-VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVL-----------N-PEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHHHHHHHcCCC-EEEEecCCccHHHHHHHHHHHCCCCEEEEeecc-----------C-HHHHHHHHHcCCCEEECCC
Confidence 33445555555542 22222 2 124556677777776554422111 1 2445667788888887663
Q ss_pred cccccChHHHHHHHHhCCEEE
Q 021627 284 RAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 284 ~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
- ++++++.+++.|+.++
T Consensus 96 ~----~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 96 L----TPPLLKAAQEGPIPLI 112 (212)
T ss_pred C----CHHHHHHHHHcCCCEe
Confidence 2 7788888888887665
No 129
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=54.33 E-value=23 Score=32.02 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=38.0
Q ss_pred cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCC
Q 021627 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN 111 (310)
Q Consensus 50 ~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~ 111 (310)
-..+-+|-.+...... .....|--.++...++.|++++|+|++.. ++.+.++|..
T Consensus 15 it~~gtHNS~~~~~~~------~~~~~nQ~~si~~QL~~GiR~l~ld~~~~-~~~~~lcH~~ 69 (270)
T cd08588 15 YTFLTTHNSFANSEDA------FFLAPNQEDDITKQLDDGVRGLMLDIHDA-NGGLRLCHSV 69 (270)
T ss_pred ceeEEeccCccccCCC------cccccccCCCHHHHHHhCcceEeeeEEec-CCCEEEECCC
Confidence 3556677665531000 01344555688899999999999999996 7778999964
No 130
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=52.64 E-value=1.9e+02 Score=26.50 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC--------HH----HHHHHHHHC-CCCCEEEEecCCCccccccccCCHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ--------PD----AALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEAIKVC 271 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~--------~~----~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 271 (310)
..+..+++.-++. ..+++++-.. .+ .++.+.+.. ..+|+.+=.+.+. ++ +.+..|
T Consensus 29 e~~~avi~AAe~~--~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~---------~~-e~i~~a 96 (285)
T PRK07709 29 EWTQAILAAAEEE--KSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGS---------SF-EKCKEA 96 (285)
T ss_pred HHHHHHHHHHHHH--CCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCC---------CH-HHHHHH
Confidence 3556666665554 3456665422 11 222233332 2378887776653 23 445567
Q ss_pred HHcCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 272 LAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 272 ~~~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.+.|++.|.++.+.+ ..+.+.++.+|+.|..|
T Consensus 97 i~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~V 134 (285)
T PRK07709 97 IDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSV 134 (285)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 788999999987765 24778999999999866
No 131
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=52.58 E-value=90 Score=27.40 Aligned_cols=68 Identities=22% Similarity=0.206 Sum_probs=44.6
Q ss_pred ecCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 226 SSFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
.+|.+.+++.+++. .++|+ ..|.-. ..+..++...+.|++.|.++.+...--.++++.+|+.|.+..
T Consensus 46 iTfGp~~v~~l~~~-t~~p~DvHLMV~-----------~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaG 113 (220)
T COG0036 46 ITFGPPVVKALRKI-TDLPLDVHLMVE-----------NPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAG 113 (220)
T ss_pred cccCHHHHHHHhhc-CCCceEEEEecC-----------CHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEE
Confidence 36899999999983 33443 222211 224445555677899988888733223579999999998875
Q ss_pred e
Q 021627 305 S 305 (310)
Q Consensus 305 v 305 (310)
+
T Consensus 114 v 114 (220)
T COG0036 114 L 114 (220)
T ss_pred E
Confidence 4
No 132
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=52.15 E-value=18 Score=32.19 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=31.0
Q ss_pred chHHHHHHHHhCCCCEEEEEEEEec-CCeEEEecCCCc
Q 021627 77 NTILSFNAAARHPLDFIEFDVQVTR-DGCPVIFHDNFI 113 (310)
Q Consensus 77 NTl~Af~~A~~~Gad~vE~DV~lTk-Dg~~Vv~HD~~l 113 (310)
|--.++...++.|++++|+||+... ++.+.++|....
T Consensus 38 ~Q~~~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~~ 75 (271)
T cd08557 38 TQDLSITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLFL 75 (271)
T ss_pred ccCCCHHHHHhcCceEEEEEeeeecCCCcEEEEccccc
Confidence 3344688899999999999999998 889999997554
No 133
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=51.76 E-value=30 Score=31.43 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHcCCceEEeccccc----------------ccChHHHHHHHHhCCEEEeecCC
Q 021627 263 SLDEAIKVCLAGGLQGIVSEVRAI----------------FKNPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~~~~l----------------~~~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
.....+++|.++|+..+.++.-+- .--+++++.++++|..|..|.-.
T Consensus 33 ~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 456788999999999999875442 11268999999999999999743
No 134
>PLN02334 ribulose-phosphate 3-epimerase
Probab=51.60 E-value=88 Score=27.29 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHCCCCC-EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc--cccChHHHHHHHHhCCEE
Q 021627 227 SFQPDAALLIRKLQSTYP-VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~--l~~~~~lv~~~~~~Gl~v 303 (310)
+|.++.++.+++. ++.+ -..+.-. ...+.++.+...|++++.++... .....+.++.+++.|+.+
T Consensus 51 ~~g~~~~~~l~~~-~~~~~~vhlmv~-----------~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~i 118 (229)
T PLN02334 51 TIGPPVVKALRKH-TDAPLDCHLMVT-----------NPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKA 118 (229)
T ss_pred ccCHHHHHHHHhc-CCCcEEEEeccC-----------CHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeE
Confidence 4566777777766 4444 2222111 12334556667788877444331 111346777777777765
Q ss_pred Ee
Q 021627 304 VS 305 (310)
Q Consensus 304 ~v 305 (310)
.+
T Consensus 119 Gl 120 (229)
T PLN02334 119 GV 120 (229)
T ss_pred EE
Confidence 54
No 135
>PRK00865 glutamate racemase; Provisional
Probab=51.20 E-value=61 Score=29.04 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCcccccccc----CCHHHHHHHHHHcCCceEEecccc
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRR----SSLDEAIKVCLAGGLQGIVSEVRA 285 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~i~~~~~~ 285 (310)
..+++.+++..|+..+.|+.+....||-.... .-..++++++.+.|++++++..+.
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNT 77 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNT 77 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 67899999999999999998876666543221 123466777788899999988764
No 136
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=50.86 E-value=51 Score=22.42 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHcCCceEEec-ccccccChHHHHHHHHhCCEEEe
Q 021627 263 SLDEAIKVCLAGGLQGIVSE-VRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~-~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
++.+.++.|++.|++.+.+. ...+...+++.+.+++.|++++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEE
Confidence 57888999999999988764 33333446788888889988764
No 137
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.09 E-value=1.9e+02 Score=27.36 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCC-CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc
Q 021627 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA 285 (310)
Q Consensus 207 v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 285 (310)
+..+++.+.+.+..-+++++++.+.-....++..+ .+.+.++--+ ......++.+....+.++.....
T Consensus 66 ~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d-----------~~~~~~~~l~~~~Pd~v~~~~~~ 134 (425)
T PRK05749 66 AIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYD-----------LPGAVRRFLRFWRPKLVIIMETE 134 (425)
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCC-----------cHHHHHHHHHhhCCCEEEEEecc
Confidence 44455555555555577888877666665655444 3444433111 12344556677777777655444
Q ss_pred cccChHHHHHHHHhCCEEEee
Q 021627 286 IFKNPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 286 l~~~~~lv~~~~~~Gl~v~vw 306 (310)
+ .+.++..++..|..++.+
T Consensus 135 ~--~~~~l~~~~~~~ip~vl~ 153 (425)
T PRK05749 135 L--WPNLIAELKRRGIPLVLA 153 (425)
T ss_pred h--hHHHHHHHHHCCCCEEEE
Confidence 4 577888888888877665
No 138
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.07 E-value=83 Score=27.37 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 266 EAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+.++.+.+.|+++++.+. + ++++++.++++|+.++.
T Consensus 79 ~~~~~a~~aGA~FivsP~--~--~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 79 VTARLAILAGAQFIVSPS--F--NRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHcCCCEEECCC--C--CHHHHHHHHHcCCCEEC
Confidence 345677888999888663 2 88999999998887654
No 139
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=49.71 E-value=26 Score=33.90 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=51.5
Q ss_pred cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHCCC-----------------CC
Q 021627 183 SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQST-----------------YP 244 (310)
Q Consensus 183 ~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~p~-----------------~~ 244 (310)
+.-+-||+- |.. +...-++.+++.|..| .+-+|||++++++.+.+.++. +.
T Consensus 123 ~~EitiE~n-P~~----------~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in 191 (416)
T COG0635 123 DAEITIEAN-PGT----------VEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSIN 191 (416)
T ss_pred CceEEEEeC-CCC----------CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 478888884 332 3344566677777653 334899999999998877651 22
Q ss_pred EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 245 VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
+=++++.+.+. ..++.+.++.+..++.+-|.+.
T Consensus 192 ~DLIyglP~QT-----~~~~~~~l~~a~~l~pdhis~y 224 (416)
T COG0635 192 IDLIYGLPGQT-----LESLKEDLEQALELGPDHLSLY 224 (416)
T ss_pred EEeecCCCCCC-----HHHHHHHHHHHHhCCCCEEEEe
Confidence 22333322111 1245667777788888777654
No 140
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=49.64 E-value=1.7e+02 Score=26.37 Aligned_cols=31 Identities=3% Similarity=0.054 Sum_probs=25.0
Q ss_pred ceEEecccccccChHHHHHHHHhCCEEEeecCC
Q 021627 277 QGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 277 ~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
..+.+++-.. ++..++.+++.|+.++.|+++
T Consensus 178 ~~fRpP~G~~--n~~~~~~l~~~G~~~v~Wsvd 208 (268)
T TIGR02873 178 KWFAPPSGSF--NDNVVQIAADLQMGTIMWTVD 208 (268)
T ss_pred CEEECCCCCC--CHHHHHHHHHCCCeEEEeccC
Confidence 4556665544 889999999999999999986
No 141
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=49.62 E-value=2.2e+02 Score=26.49 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
.+++.+..+++..+++|+... ++. .+.+++.+... ++++|.+-- .++.+|.+.+++++
T Consensus 191 ~~~~~i~~v~~~~~~iPVI~n--GgI--------~s~eda~~~l~--~aDgVmIGR-a~l~nP~~~~~~~~ 248 (333)
T PRK11815 191 LDYDRVYRLKRDFPHLTIEIN--GGI--------KTLEEAKEHLQ--HVDGVMIGR-AAYHNPYLLAEVDR 248 (333)
T ss_pred cCHHHHHHHHHhCCCCeEEEE--CCc--------CCHHHHHHHHh--cCCEEEEcH-HHHhCCHHHHHHHH
Confidence 457888888887788886443 221 24566655543 588888753 34567877777754
No 142
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=49.43 E-value=2.1e+02 Score=26.18 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEEec-------CCHHH----HHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSS-------FQPDA----ALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~S-------f~~~~----l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++.+ .+++++- +..+. +..+.+ ...+|+.+-.+.+. ++ +.+..|.+
T Consensus 29 e~~~avi~AAee~~--sPvIlq~s~~~~~~~~~~~~~~~~~~~a~-~~~VPValHLDHg~---------~~-e~i~~ai~ 95 (286)
T PRK12738 29 ETIQAILEVCSEMR--SPVILAGTPGTFKHIALEEIYALCSAYST-TYNMPLALHLDHHE---------SL-DDIRRKVH 95 (286)
T ss_pred HHHHHHHHHHHHHC--CCEEEEcCcchhhhCCHHHHHHHHHHHHH-HCCCCEEEECCCCC---------CH-HHHHHHHH
Confidence 45667777766653 4677753 12222 122222 34789987776653 33 45566778
Q ss_pred cCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 96 ~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 96 AGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999999998765 24778999999999865
No 143
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=49.14 E-value=50 Score=30.88 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHCCCCCEEEEecCCCc---ccc------ccccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 232 AALLIRKLQSTYPVFFLTNGGAQ---TCT------DVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~~~~~---~~~------~~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
.+..+|++.|++++.+.+++... .+. ..|...++.++++++..|++||.++++..
T Consensus 60 ~~~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p 123 (362)
T cd02872 60 RFNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYP 123 (362)
T ss_pred HHHHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeecc
Confidence 34567778888888877654321 111 11223457788999999999999998764
No 144
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=49.03 E-value=1.6e+02 Score=27.35 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=45.3
Q ss_pred CE-EEecC----CHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHH
Q 021627 222 PI-MFSSF----QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKI 296 (310)
Q Consensus 222 ~v-~~~Sf----~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~ 296 (310)
++ +.+|. |+++++..-+...+-+. ++.+... ..++.....|+.+|+..+......+-.-.+++..+
T Consensus 126 PL~Id~s~n~~kD~evleaale~~~g~~p-LInSat~--------en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l 196 (319)
T PRK04452 126 PLIIGGSGNPEKDAEVLEKVAEAAEGERC-LLGSAEE--------DNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILL 196 (319)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHhCCCCC-EEEECCH--------HHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHH
Confidence 45 56666 79999998877654422 2222111 13567778888888876666544444456788888
Q ss_pred HHhCC
Q 021627 297 KEAKL 301 (310)
Q Consensus 297 ~~~Gl 301 (310)
.+.|+
T Consensus 197 ~~~Gi 201 (319)
T PRK04452 197 TELGV 201 (319)
T ss_pred HHcCC
Confidence 88887
No 145
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.62 E-value=2.3e+02 Score=26.45 Aligned_cols=59 Identities=24% Similarity=0.179 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
++.+..+.+++.. ++|+...-+- .+.+.+.+....-++++|.+- +.++.+|.+++++++
T Consensus 272 ~~~~~~~~ik~~~-~ipvi~~G~i----------~~~~~~~~~l~~~~~D~V~~g-R~~ladP~l~~k~~~ 330 (343)
T cd04734 272 PFLPLAARIKQAV-DLPVFHAGRI----------RDPAEAEQALAAGHADMVGMT-RAHIADPHLVAKARE 330 (343)
T ss_pred hhHHHHHHHHHHc-CCCEEeeCCC----------CCHHHHHHHHHcCCCCeeeec-HHhHhCccHHHHHHc
Confidence 3456777777764 5776543211 134555556555568888764 455789999999865
No 146
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=46.94 E-value=53 Score=30.28 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCCEEEEecCCCc--cccc------cccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 231 DAALLIRKLQSTYPVFFLTNGGAQ--TCTD------VRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~--~~~~------~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
..+..+|++.|++++.+.+++... .+.. .|...+..++++++..|++||.++++..
T Consensus 73 ~~~~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p 136 (322)
T cd06548 73 GQLRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYP 136 (322)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCC
Confidence 446678888899888877764221 1111 1223457888999999999999988754
No 147
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.87 E-value=2.4e+02 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=17.1
Q ss_pred HHHHHHcCCceEEec--ccccccChHHHHHHHHhCCEEEe
Q 021627 268 IKVCLAGGLQGIVSE--VRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 268 ~~~~~~~~~~~i~~~--~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
++.+...|++.+.+. .+......+.++.+|++|+.|.+
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEE
Confidence 344455555553322 12111234455555666655544
No 148
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=46.44 E-value=2.3e+02 Score=25.73 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=56.2
Q ss_pred CccCHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCC---HHHHHHHHHHCCCCC
Q 021627 169 PLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQ---PDAALLIRKLQSTYP 244 (310)
Q Consensus 169 ~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~---~~~l~~l~~~~p~~~ 244 (310)
.+.=|+|+.+++|. ++-+.-|-+.-+..+...+.+.+++-++++.+.+.+. ..++..+| .-++..+|++. ++|
T Consensus 17 GLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~i--k~lVIACNTASa~al~~LR~~~-~iP 93 (269)
T COG0796 17 GLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGI--KALVIACNTASAVALEDLREKF-DIP 93 (269)
T ss_pred cHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC--CEEEEecchHHHHHHHHHHHhC-CCC
Confidence 45568999999985 7777788776655555566777788888888877763 46666666 44566777776 788
Q ss_pred EEEEe
Q 021627 245 VFFLT 249 (310)
Q Consensus 245 ~~~l~ 249 (310)
+.-+.
T Consensus 94 VvGvi 98 (269)
T COG0796 94 VVGVI 98 (269)
T ss_pred EEEec
Confidence 87665
No 149
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=46.19 E-value=2.3e+02 Score=26.66 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=60.6
Q ss_pred CHHHHHHhcC---CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcC------CCCEEEecCCHHHHHHHHHHCCC
Q 021627 172 TLQEAFEKVD---QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQ------GRPIMFSSFQPDAALLIRKLQST 242 (310)
Q Consensus 172 tL~evL~~~~---~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~------~~~v~~~Sf~~~~l~~l~~~~p~ 242 (310)
.|.+.|.... .++.+.-|+|..+... +....+--..++.+.+.+.|- .++-+|+. +.+.|+.+|+..-+
T Consensus 104 ~f~~aL~~~~~~~g~~~vIAEvKrASPSk-G~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~G-s~e~L~~vr~~~v~ 181 (338)
T PLN02460 104 DFVGALRAAHKRTGQPGLIAEVKKASPSR-GVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQG-SFENLEAIRNAGVK 181 (338)
T ss_pred CHHHHHHhhccccCCcceEeeeccCCCCC-CccCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCC-CHHHHHHHHHcCCC
Confidence 4555554321 2378999999865421 000000012344555555552 34445544 67888999986446
Q ss_pred CCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccC----hHHHHHHHHhCCEEEe
Q 021627 243 YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN----PGAIKKIKEAKLCLVS 305 (310)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~----~~lv~~~~~~Gl~v~v 305 (310)
+|+..- |+....+ -+..++.+|+++|.+=...+ + .++++.+++.|+.+.+
T Consensus 182 lPvLrK---------DFIID~y--QI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LV 235 (338)
T PLN02460 182 CPLLCK---------EFIVDAW--QIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALI 235 (338)
T ss_pred CCEeec---------cccCCHH--HHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEE
Confidence 776421 1111111 13455666766655443333 3 2566666777766654
No 150
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=46.01 E-value=2.4e+02 Score=25.80 Aligned_cols=86 Identities=8% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HH-H---HHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PD-A---ALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~-~---l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++... .+ . +..+.+ ...+|+.+=.+.+. + .+.+..|.+
T Consensus 29 e~~~avi~AAee~--~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~-~~~VPV~lHLDHg~---------~-~e~i~~Ai~ 95 (284)
T PRK09195 29 ETMQVVVETAAEL--HSPVIIAGTPGTFSYAGTEYLLAIVSAAAK-QYHHPLALHLDHHE---------K-FDDIAQKVR 95 (284)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcChhHHhhCCHHHHHHHHHHHHH-HCCCCEEEECCCCC---------C-HHHHHHHHH
Confidence 4566666665555 3466666422 11 1 222223 24788887766653 2 345667778
Q ss_pred cCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 96 ~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 96 SGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred cCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 8999999998765 24778999999999765
No 151
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=45.76 E-value=66 Score=28.39 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCC--EE
Q 021627 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL--CL 303 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl--~v 303 (310)
+|.+.+++.+++ +.+. ..|.-. ..+..++...+.|++.|.++++......+.++.+|++|+ ++
T Consensus 56 tfGp~~i~~i~~---~~~~DvHLMv~-----------~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~ka 121 (228)
T PRK08091 56 TVGAIAIKQFPT---HCFKDVHLMVR-----------DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLI 121 (228)
T ss_pred ccCHHHHHHhCC---CCCEEEEeccC-----------CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceE
Confidence 788999999973 4442 122111 234445556678999999888753222378899999997 54
Q ss_pred E
Q 021627 304 V 304 (310)
Q Consensus 304 ~ 304 (310)
.
T Consensus 122 G 122 (228)
T PRK08091 122 G 122 (228)
T ss_pred E
Confidence 3
No 152
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.70 E-value=50 Score=25.60 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
...+.++.+.+.|+..+.+..... ++++++.++++|+.+.
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g~~--~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPGAE--SEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TTS----HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCCEEEEEcchH--HHHHHHHHHHcCCEEE
Confidence 346778888888999888877755 8999999999999876
No 153
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=45.49 E-value=1.2e+02 Score=29.01 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCE-EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 283 (310)
++++.+-++.... .-++++.|+|+++++...+...+-+. .+-... ..++++.+.|+.+|+..+.-..
T Consensus 85 ~fa~~vk~V~~a~--~~PLIL~~~D~evl~aale~~~~~kpLL~aAt~----------eNyk~m~~lA~~y~~pl~v~sp 152 (386)
T PF03599_consen 85 EFAKAVKKVAEAV--DVPLILCGCDPEVLKAALEACAGKKPLLYAATE----------ENYKAMAALAKEYGHPLIVSSP 152 (386)
T ss_dssp HHHHHHHHHHHC---SSEEEEESSHHHHHHHHHHHTTTS--EEEEEBT----------TTHHHHHHHHHHCT-EEEEE-S
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHhCcCCcEEeEcCH----------HHHHHHHHHHHHcCCeEEEEec
Confidence 4444443333322 45889999999999999887664433 322211 1467777888888876554332
Q ss_pred cccccChHHHHHHHHhCC
Q 021627 284 RAIFKNPGAIKKIKEAKL 301 (310)
Q Consensus 284 ~~l~~~~~lv~~~~~~Gl 301 (310)
..+-.-.++...+.+.|+
T Consensus 153 ~Dln~lk~Ln~~l~~~Gv 170 (386)
T PF03599_consen 153 IDLNLLKQLNIKLTELGV 170 (386)
T ss_dssp SCHHHHHHHHHHHHTTT-
T ss_pred ccHHHHHHHHHHHHhcCc
Confidence 333233567777777775
No 154
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.16 E-value=2.4e+02 Score=25.71 Aligned_cols=86 Identities=10% Similarity=0.167 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HHH----HHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PDA----ALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~~----l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++-.. .+. +..+.+. -.+|+.+=.+.+. + .+.+..|.+
T Consensus 29 e~~~avi~AAee~--~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~-~~VPValHLDH~~---------~-~e~i~~ai~ 95 (284)
T PRK12737 29 ETLQVVVETAAEL--RSPVILAGTPGTFSYAGTDYIVAIAEVAARK-YNIPLALHLDHHE---------D-LDDIKKKVR 95 (284)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcCccHHhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCC---------C-HHHHHHHHH
Confidence 4566666665554 3366665422 121 2222222 3688887766543 2 345677788
Q ss_pred cCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|+.|..|
T Consensus 96 ~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 96 AGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASV 131 (284)
T ss_pred cCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 9999999998765 24678999999999866
No 155
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=44.23 E-value=2.5e+02 Score=25.60 Aligned_cols=86 Identities=8% Similarity=0.134 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HH----HHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PD----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (310)
..+..+++.-++. ..+++++... .+ .+..+.+ .-.+|+.+=.+.+. + .+.+..|.+
T Consensus 27 e~~~avi~AAee~--~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~-~~~VPValHLDHg~---------~-~e~i~~ai~ 93 (282)
T TIGR01858 27 ETIQAVVETAAEM--RSPVILAGTPGTFKHAGTEYIVALCSAAST-TYNMPLALHLDHHE---------S-LDDIRQKVH 93 (282)
T ss_pred HHHHHHHHHHHHh--CCCEEEEeCccHHhhCCHHHHHHHHHHHHH-HCCCCEEEECCCCC---------C-HHHHHHHHH
Confidence 3455666665554 3366665422 12 1122222 23689887776653 2 345677788
Q ss_pred cCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 274 ~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 94 ~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 94 AGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred cCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999999998765 24678999999999865
No 156
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.17 E-value=2.4e+02 Score=25.27 Aligned_cols=119 Identities=14% Similarity=0.022 Sum_probs=67.1
Q ss_pred CHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCC------CCEEEecCCHHHHHHHHHHCCCCCE
Q 021627 172 TLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQSTYPV 245 (310)
Q Consensus 172 tL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~------~~v~~~Sf~~~~l~~l~~~~p~~~~ 245 (310)
.|.+.|. ++++.+.-|+|..+... +......-...+...+.+.|-. ++-+| .-+.+.+..+++. -++|+
T Consensus 40 ~~~~~l~--~~~~~vIaeik~~sps~-g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f-~g~~~~l~~v~~~-v~iPv 114 (260)
T PRK00278 40 DFAAALR--AGKPAVIAEVKKASPSK-GVIREDFDPVEIAKAYEAGGAACLSVLTDERFF-QGSLEYLRAARAA-VSLPV 114 (260)
T ss_pred CHHHHHh--cCCCeEEEEeeCCCCCC-CccCCCCCHHHHHHHHHhCCCeEEEEecccccC-CCCHHHHHHHHHh-cCCCE
Confidence 4556554 45689999999865431 0000000122344444444421 11122 2468889999886 46787
Q ss_pred EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccc--cChHHHHHHHHhCCEEEee
Q 021627 246 FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF--KNPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~--~~~~lv~~~~~~Gl~v~vw 306 (310)
.. . |+..... -+..+...|++++.+....+- .-.++++.+++.|+.+.+=
T Consensus 115 l~--k-------dfi~~~~--qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lve 166 (260)
T PRK00278 115 LR--K-------DFIIDPY--QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVE 166 (260)
T ss_pred Ee--e-------eecCCHH--HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 63 1 1111122 366778889999888776541 1236888889999887653
No 157
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=43.07 E-value=96 Score=27.65 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCcccccccc----CCHHHHHHHHH-HcCCceEEeccccc
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRR----SSLDEAIKVCL-AGGLQGIVSEVRAI 286 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~i~~~~~~l 286 (310)
..+++.+++..|+..+.|+.+....||-.... ..+.+.+++.. +.|++.+++..+..
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA 72 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTA 72 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 56889999999999999998876666543221 12345667777 88999999887644
No 158
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.71 E-value=2.7e+02 Score=25.46 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HHHHH-HHHH--HCCCCCEEEEecCCCccccccccCCHHHHHHHHHHc
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PDAAL-LIRK--LQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG 274 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~~l~-~l~~--~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (310)
..+..+++.-++. ..+++++... .+.+. .++. ....+|+.+-.+.+. ++ +.+..|.+.
T Consensus 29 e~~~avi~AAe~~--~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~---------~~-e~i~~Ai~~ 96 (283)
T PRK07998 29 ETTISILNAIERS--GLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGK---------TF-EDVKQAVRA 96 (283)
T ss_pred HHHHHHHHHHHHh--CCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCC---------CH-HHHHHHHHc
Confidence 4566677666655 3467776522 12222 1221 234788887766543 23 445567788
Q ss_pred CCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 275 GLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 275 ~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
|+++|.++.+.+ ..+.+.++.+|..|+.|
T Consensus 97 GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 97 GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 999999987654 23678999999999876
No 159
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=42.51 E-value=1.9e+02 Score=25.93 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=64.0
Q ss_pred CHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCC------CCEEEecCCHHHHHHHHHHCCCCCE
Q 021627 172 TLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQSTYPV 245 (310)
Q Consensus 172 tL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~------~~v~~~Sf~~~~l~~l~~~~p~~~~ 245 (310)
.|.+.|. .+++.+..|+|..+... +....+.-...+...+.+.|-. ++-+| ..+.+.++.+++.. ++|+
T Consensus 31 ~~~~~l~--~~~~~vIaEiKr~SPs~-G~i~~~~d~~~~A~~y~~~GA~aISVlTe~~~F-~Gs~~~l~~v~~~v-~~Pv 105 (247)
T PRK13957 31 PLRDSLK--SRSFSIIAECKRKSPSA-GELRADYHPVQIAKTYETLGASAISVLTDQSYF-GGSLEDLKSVSSEL-KIPV 105 (247)
T ss_pred hHHHHHh--CCCCeEEEEEecCCCCC-CCcCCCCCHHHHHHHHHHCCCcEEEEEcCCCcC-CCCHHHHHHHHHhc-CCCE
Confidence 3555543 34689999999854321 0000000122344445555432 22222 35788888888863 4665
Q ss_pred EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccCh----HHHHHHHHhCCEEEe
Q 021627 246 FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVS 305 (310)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~----~lv~~~~~~Gl~v~v 305 (310)
..- + +.. + ..-+..++..|+++|.+-...+ ++ ++++.++..|+.+.+
T Consensus 106 L~K--D-------FIi-d-~~QI~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGle~LV 156 (247)
T PRK13957 106 LRK--D-------FIL-D-EIQIREARAFGASAILLIVRIL--TPSQIKSFLKHASSLGMDVLV 156 (247)
T ss_pred Eec--c-------ccC-C-HHHHHHHHHcCCCEEEeEHhhC--CHHHHHHHHHHHHHcCCceEE
Confidence 321 1 111 1 1223455678999887776655 43 588888999988765
No 160
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=42.50 E-value=1.8e+02 Score=26.60 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCCccCHHHHHHhcCCc-ceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCE
Q 021627 167 DTPLCTLQEAFEKVDQS-VGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPV 245 (310)
Q Consensus 167 ~~~iptL~evL~~~~~~-~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~ 245 (310)
+..+..+++-|+.+..+ +.+++ |-+|....+.. +.+...+ ++.+.+.|.-+.+=+|.|+.+.|+.+.+.....|.
T Consensus 85 ~~~~~a~e~Sl~rLg~dyvDLyL-iHwP~~~~~~~--~~etw~a-lE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~ 160 (280)
T COG0656 85 DETLKALEASLKRLGLDYVDLYL-IHWPVPNKYVV--IEETWKA-LEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPA 160 (280)
T ss_pred chHHHHHHHHHHHhCCCceeEEE-ECCCCCccCcc--HHHHHHH-HHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCc
Confidence 45566778888877632 33222 34442110000 1122222 33345667888999999999999999987332233
Q ss_pred EEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc----cccChHHHHHHHHhCC
Q 021627 246 FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA----IFKNPGAIKKIKEAKL 301 (310)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~----l~~~~~lv~~~~~~Gl 301 (310)
.-=.... ++ ....+.+++|+..|+.......-. ++.+|.+.+-++++|.
T Consensus 161 ~NQIe~h--p~-----~~q~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~ 213 (280)
T COG0656 161 VNQIEYH--PY-----LRQPELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGK 213 (280)
T ss_pred eEEEEec--cC-----CCcHHHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCC
Confidence 2111110 00 122447888888887654433211 4445666666666665
No 161
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=42.10 E-value=52 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCC
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 112 (310)
.-.+||+.++++++ ...||+ |.+ .|+..++++|.-
T Consensus 14 ~~i~~~l~~lq~~V---gG~ie~-v~l-~~~~~l~~neeG 48 (95)
T PF12957_consen 14 IEIDNSLEALQKLV---GGYIEV-VYL-DDGVVLYCNEEG 48 (95)
T ss_pred EecCCCHHHHHHHH---CCeEEE-Eec-CCCEEEEEeCcc
Confidence 35778899999999 457777 656 778888888744
No 162
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=41.26 E-value=2.3e+02 Score=24.32 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=63.7
Q ss_pred HHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCcc
Q 021627 176 AFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQT 255 (310)
Q Consensus 176 vL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~ 255 (310)
+++.++.++-+....-....- .. ...+..+.+...+.|.. .++--+++.++.+++. .++|+..++..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~~~a~~~~~~G~~---~~~~~~~~~~~~i~~~-~~iPil~~~~~~~~~ 73 (219)
T cd04729 3 LLEQLKGGLIVSCQALPGEPL-HS----PEIMAAMALAAVQGGAV---GIRANGVEDIRAIRAR-VDLPIIGLIKRDYPD 73 (219)
T ss_pred HHHHhcCCeEEEccCCCCCCc-Cc----HHHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHh-CCCCEEEEEecCCCC
Confidence 456666666666555422111 11 12345555555555542 3433456788888875 688886433221100
Q ss_pred ccccccCCHHHHHHHHHHcCCceEEecccccc-----cChHHHHHHHHhC-CEEEe
Q 021627 256 CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF-----KNPGAIKKIKEAK-LCLVS 305 (310)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~-----~~~~lv~~~~~~G-l~v~v 305 (310)
..-.-... .+.++.+.+.|++.+.+...... ...++++.+++.| +.+.+
T Consensus 74 ~~~~ig~~-~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 74 SEVYITPT-IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred CCceeCCC-HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence 00000012 23457788889998887543210 2356888999988 65543
No 163
>PRK00865 glutamate racemase; Provisional
Probab=40.57 E-value=2.7e+02 Score=24.85 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=54.0
Q ss_pred CccCHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHH--HHHHHHHHCCCCCE
Q 021627 169 PLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPD--AALLIRKLQSTYPV 245 (310)
Q Consensus 169 ~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~--~l~~l~~~~p~~~~ 245 (310)
.+.-|+++.+.+|. ++.+.-|-+.-+......+.+..++.++++.+.+.+. +-+++.++... .+..+++.. ++|+
T Consensus 17 GLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~-d~iVIaCNTa~~~~l~~lr~~~-~iPv 94 (261)
T PRK00865 17 GLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGV-KMLVIACNTASAVALPDLRERY-DIPV 94 (261)
T ss_pred HHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC-CEEEEeCchHHHHHHHHHHHhC-CCCE
Confidence 45668999999985 7888889887666544556666777777777776554 45566666544 568888875 6776
Q ss_pred EE
Q 021627 246 FF 247 (310)
Q Consensus 246 ~~ 247 (310)
.-
T Consensus 95 ig 96 (261)
T PRK00865 95 VG 96 (261)
T ss_pred Ee
Confidence 54
No 164
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=40.55 E-value=1.2e+02 Score=26.10 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHCCC---CCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEE
Q 021627 227 SFQPDAALLIRKLQST---YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v 303 (310)
.|-+.+++.+|+..+. +-+-.... ..++.++-....|++.+..+++...-..++++++|++|+++
T Consensus 48 T~G~pvV~slR~~~~~~~ffD~HmMV~------------~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~ 115 (224)
T KOG3111|consen 48 TFGPPVVESLRKHTGADPFFDVHMMVE------------NPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKV 115 (224)
T ss_pred ccchHHHHHHHhccCCCcceeEEEeec------------CHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCee
Confidence 4778888888886332 22222222 22333444456788888888765433358999999999988
Q ss_pred Ee
Q 021627 304 VS 305 (310)
Q Consensus 304 ~v 305 (310)
.+
T Consensus 116 G~ 117 (224)
T KOG3111|consen 116 GL 117 (224)
T ss_pred eE
Confidence 64
No 165
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=40.03 E-value=23 Score=26.80 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=12.8
Q ss_pred EEEEEecCC-eEEEecC
Q 021627 95 FDVQVTRDG-CPVIFHD 110 (310)
Q Consensus 95 ~DV~lTkDg-~~Vv~HD 110 (310)
..|-+|.|| .+||+|-
T Consensus 4 ~~iavT~dG~tIVcwHP 20 (96)
T PF10210_consen 4 VEIAVTSDGRTIVCWHP 20 (96)
T ss_pred eeEEEecCCCEEEEeCC
Confidence 357899999 7888884
No 166
>PLN02858 fructose-bisphosphate aldolase
Probab=39.74 E-value=3.9e+02 Score=30.30 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCHH-------HHHHHHH--HCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcC
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQPD-------AALLIRK--LQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGG 275 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~~-------~l~~l~~--~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (310)
..+..+++.-++. ..+++++-.... ....++. ..-.+|+.+=.+.+. + .+.+..|.+.|
T Consensus 1125 e~~~avi~aAe~~--~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHLDHg~---------~-~~~i~~ai~~G 1192 (1378)
T PLN02858 1125 EGIEAVVAAAEAE--KSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHFDHGT---------S-KHELLEALELG 1192 (1378)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEECCCCC---------C-HHHHHHHHHhC
Confidence 4566677766655 446777643321 2222222 123688887766543 2 34566777889
Q ss_pred CceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 276 LQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 276 ~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 1193 f~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~V 1226 (1378)
T PLN02858 1193 FDSVMVDGSHLSFTENISYTKSISSLAHSKGLMV 1226 (1378)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 99999997765 24778999999999876
No 167
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=39.72 E-value=2.6e+02 Score=25.95 Aligned_cols=122 Identities=12% Similarity=0.127 Sum_probs=69.9
Q ss_pred ccCHHHHHHhcC--CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCH----HHHHHHHHHCCCC
Q 021627 170 LCTLQEAFEKVD--QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQP----DAALLIRKLQSTY 243 (310)
Q Consensus 170 iptL~evL~~~~--~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~----~~l~~l~~~~p~~ 243 (310)
.-.++.+++.+. .+++|.||-=.+ ....+-++.+.+.+..+|.++-|-+. +.+..+++.....
T Consensus 81 ~eam~k~I~~v~~~~d~Pl~IDSt~p-----------~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~eel~llk~yg~aa 149 (308)
T PRK00979 81 PEAMEKYIDFVSEITDLPFLIDSTSP-----------EARIAAAKYATELGLADRAIYNSINPSIEEEEIEALKESDIKA 149 (308)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCH-----------HHHHHHHHHhhhcCCCCceEEEeccCCCCHHHHHHHHHhCCce
Confidence 334556666655 367888884322 34555556666667778889888664 4677777776565
Q ss_pred CEEEEecCCCccccccccCCHHH--------HHHHHHHcCCceEEecccccc-----cChHHHHHHHHh-CCEE
Q 021627 244 PVFFLTNGGAQTCTDVRRSSLDE--------AIKVCLAGGLQGIVSEVRAIF-----KNPGAIKKIKEA-KLCL 303 (310)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~i~~~~~~l~-----~~~~lv~~~~~~-Gl~v 303 (310)
-+.+.++.+ .+....|..-++. .++.+.+.|+.-+.++.-.+- .+-+.++.+|+. |+.+
T Consensus 150 vIvLa~d~~-~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~G~pt 222 (308)
T PRK00979 150 AIVLAFDPM-DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKFGYPV 222 (308)
T ss_pred EEEEEcCCC-CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHcCCCe
Confidence 666666654 2211222222333 577788888865555542221 123566666654 5544
No 168
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=39.69 E-value=2.7e+02 Score=27.12 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA 285 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 285 (310)
|..+.+..+++..|++.+.+.+++.. +.+.++.....|++.+.++.+.
T Consensus 96 ~~~~~l~~~~~~~~~i~i~lsTNG~~----------l~e~i~~L~~~gvd~V~islka 143 (442)
T TIGR01290 96 KTFQTLELVARQLPDVKLCLSTNGLM----------LPEHVDRLVDLGVGHVTITINA 143 (442)
T ss_pred ccHHHHHHHHHhcCCCeEEEECCCCC----------CHHHHHHHHHCCCCeEEEeccC
Confidence 34556666666667777766665421 1233445555666666665543
No 169
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=39.67 E-value=75 Score=29.02 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=36.3
Q ss_pred HHHHHHHCCCCCEEEEecCCCc---ccc------ccccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 233 ALLIRKLQSTYPVFFLTNGGAQ---TCT------DVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 233 l~~l~~~~p~~~~~~l~~~~~~---~~~------~~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
.+.+|++.|++++.+-+++... .+. ..|..-+..+++++++.|++||.++++..
T Consensus 57 ~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P 119 (299)
T cd02879 57 TETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFP 119 (299)
T ss_pred HHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCC
Confidence 3567777888887766654321 111 11233457889999999999999998864
No 170
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.06 E-value=47 Score=29.65 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHcCCceEEecccccccCh----HHHHHHHHhCCEEEe
Q 021627 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVS 305 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~~~~l~~~~----~lv~~~~~~Gl~v~v 305 (310)
.+++.++.|+.+|++.|-++.-.+.+++ ++|+.+++.|+.|.+
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4577889999999999998876654443 689999999998864
No 171
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.78 E-value=1.2e+02 Score=26.98 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.6
Q ss_pred HHHHHHHHhCCEEE
Q 021627 291 GAIKKIKEAKLCLV 304 (310)
Q Consensus 291 ~lv~~~~~~Gl~v~ 304 (310)
+.++.+|++|+.|.
T Consensus 116 ~~i~~ak~~G~~v~ 129 (263)
T cd07943 116 QHIGAARKLGMDVV 129 (263)
T ss_pred HHHHHHHHCCCeEE
Confidence 34444455554443
No 172
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=38.51 E-value=1.6e+02 Score=24.74 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCcccc-------ccccCCHHHHHHHHHHcCCceEEecccccc
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCT-------DVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~ 287 (310)
...++.+++..|.+++...+.+...... ..+..-.+..++++++.+++||.++.+...
T Consensus 52 ~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~ 116 (210)
T cd00598 52 KGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPG 116 (210)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCC
Confidence 3445566666677777766654321110 011223467788889999999999887653
No 173
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=38.08 E-value=23 Score=27.45 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=32.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCC
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 112 (310)
...+.+.+|+..|+...+-.-|+.|.++.||+..+..+..
T Consensus 11 yg~~~~~e~l~~al~~aa~~~eV~vff~~DGV~~l~~~q~ 50 (116)
T TIGR03010 11 HGTASGREGLDALLAASAFDEDIGVFFIDDGVLQLLKNQQ 50 (116)
T ss_pred CCcchHHHHHHHHHHHHhccCCeEEEEechHHHHHhccCC
Confidence 3478888999999987665579999999999988876533
No 174
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=38.04 E-value=3e+02 Score=24.67 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCC-CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccC-hHHHHHHHH
Q 021627 230 PDAALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN-PGAIKKIKE 298 (310)
Q Consensus 230 ~~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~-~~lv~~~~~ 298 (310)
.+.++.+++..| ++|+... ++. .+.+++.++. ..|++++.+... ++.+ |.+++++++
T Consensus 230 ~~~v~~i~~~~~~~ipiia~--GGI--------~~~~da~~~l-~~GAd~V~vg~a-~~~~GP~~~~~i~~ 288 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGV--GGI--------DSGEDVLEML-MAGASAVQVATA-LMWDGPDVIRKIKK 288 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEE--CCC--------CCHHHHHHHH-HcCccHheEcHH-HHhcCccHHHHHhc
Confidence 445666666665 6775443 221 2456666666 478988877543 3456 888888764
No 175
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=37.30 E-value=27 Score=32.28 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=16.4
Q ss_pred hHHHHHHHHhCCEEEeec
Q 021627 290 PGAIKKIKEAKLCLVSYG 307 (310)
Q Consensus 290 ~~lv~~~~~~Gl~v~vwT 307 (310)
..+|+++|++|++|++|.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 378999999999999996
No 176
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=36.59 E-value=79 Score=26.50 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=24.2
Q ss_pred ceEEecccccccChHHHHHHHHhCCEEEeecCC
Q 021627 277 QGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 277 ~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
..+.+++-.. ++..++.+++.|+.++.|+++
T Consensus 99 ~~fr~P~G~~--~~~~~~~l~~~G~~~v~w~~~ 129 (191)
T TIGR02764 99 TLFRPPSGAF--NKAVLKAAESLGYTVVHWSVD 129 (191)
T ss_pred CEEECCCcCC--CHHHHHHHHHcCCeEEEecCC
Confidence 4556665544 888999999999999999875
No 177
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=36.27 E-value=2.4e+02 Score=24.57 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhC
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAK 300 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~G 300 (310)
++..+.+....|.+++.-++-. .++.++.+.+...+++.|-++... ++++++++++.+
T Consensus 40 ~~~a~~i~~~v~~~~~VgVf~n----------~~~~~i~~i~~~~~ld~VQlHG~e---~~~~~~~l~~~~ 97 (208)
T COG0135 40 PEQAREIASAVPKVKVVGVFVN----------ESIEEILEIAEELGLDAVQLHGDE---DPEYIDQLKEEL 97 (208)
T ss_pred HHHHHHHHHhCCCCCEEEEECC----------CCHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHhhc
Confidence 4445555555554333333322 256667777777888887776642 778888888775
No 178
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=36.02 E-value=55 Score=23.56 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=19.4
Q ss_pred EEEecCCeEEEecCCCccccccCccccccccccCHHHHhcc
Q 021627 97 VQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSY 137 (310)
Q Consensus 97 V~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l 137 (310)
+-+|.||.+.+||..=-.-.--.+.+..++..|...+..+|
T Consensus 13 fGi~~dG~LslF~G~P~~~~vI~sFfqIdv~~Les~~~~~L 53 (75)
T PF08955_consen 13 FGISEDGVLSLFEGPPGEEKVIQSFFQIDVEKLESSDHDQL 53 (75)
T ss_dssp EEEETTTEEEEBSSS-STT-BS-------TTTS-HHHHHHH
T ss_pred EEEcCCCcEEEEecCCCCCchheeeeecCHHHcCHhHHHHH
Confidence 45899999999995321100000012245666666555554
No 179
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.70 E-value=3.5e+02 Score=24.73 Aligned_cols=87 Identities=13% Similarity=0.298 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC-------HHHHH-HHHHH--CCCCCEEEEecCCCccccccccCCHHHHHHHHHHc
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ-------PDAAL-LIRKL--QSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG 274 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~-------~~~l~-~l~~~--~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (310)
..+..+++.-++. ..+++++-.. .+.+. .++.. .-.+|+.+-.+.+. ++ +.+..|.+.
T Consensus 29 e~~~avi~AAee~--~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~---------~~-e~i~~ai~~ 96 (284)
T PRK12857 29 EIVQAIVAAAEAE--KSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT---------DF-EQVMKCIRN 96 (284)
T ss_pred HHHHHHHHHHHHh--CCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC---------CH-HHHHHHHHc
Confidence 3556666665554 3466665422 12221 12221 23688887766653 23 345677788
Q ss_pred CCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 275 GLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 275 ~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 97 GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 97 GFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSV 131 (284)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 999999998765 24678999999999765
No 180
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.88 E-value=31 Score=29.33 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=7.9
Q ss_pred HHHHHcCCceEEec
Q 021627 269 KVCLAGGLQGIVSE 282 (310)
Q Consensus 269 ~~~~~~~~~~i~~~ 282 (310)
+.+.+.|++++++-
T Consensus 180 ~~l~~~gad~iivg 193 (210)
T TIGR01163 180 RELAEAGADILVAG 193 (210)
T ss_pred HHHHHcCCCEEEEC
Confidence 33446666666654
No 181
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=34.80 E-value=1.4e+02 Score=26.12 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
.+.++.+++..|++ +...|+-. + .+.++.+...|++.++.+. + ++++++.++++|+.+.
T Consensus 52 ~e~I~~l~~~~p~~----lIGAGTVL-------~-~~q~~~a~~aGa~fiVsP~--~--~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 52 LEAIRALAKEFPEA----LIGAGTVL-------N-PEQARQAIAAGAQFIVSPG--L--NPEVAKAANRYGIPYI 110 (211)
T ss_pred HHHHHHHHHhCccc----EEcccccc-------C-HHHHHHHHHcCCCEEECCC--C--CHHHHHHHHhCCCccc
Confidence 45666666666633 33344321 1 2345567788999888763 3 8899999999998764
No 182
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=34.72 E-value=1.4e+02 Score=25.95 Aligned_cols=69 Identities=17% Similarity=0.045 Sum_probs=40.9
Q ss_pred EecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChH----HHHHHHHhC
Q 021627 225 FSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPG----AIKKIKEAK 300 (310)
Q Consensus 225 ~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~----lv~~~~~~G 300 (310)
|.++.+.+++.+++..|+.++.+=... .|.. .-..+.+.+.|++.+.++... .+. .++.+++.|
T Consensus 39 ~~~~G~~~i~~lk~~~~~~~v~~DLK~-----~Di~----~~v~~~~~~~Gad~vTvH~~a---~~~~i~~~~~~~~~~g 106 (216)
T PRK13306 39 LLAEGMKAVRVLRALYPDKIIVADTKI-----ADAG----KILAKMAFEAGADWVTVICAA---HIPTIKAALKVAKEFN 106 (216)
T ss_pred HHHhCHHHHHHHHHHCCCCEEEEEEee-----cCCc----HHHHHHHHHCCCCEEEEeCCC---CHHHHHHHHHHHHHcC
Confidence 456788889999988788776432211 1111 111113567899988888643 444 555556667
Q ss_pred CEEEe
Q 021627 301 LCLVS 305 (310)
Q Consensus 301 l~v~v 305 (310)
..+.+
T Consensus 107 ~~~~V 111 (216)
T PRK13306 107 GEIQI 111 (216)
T ss_pred CEEEE
Confidence 65554
No 183
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=34.70 E-value=99 Score=28.39 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=32.4
Q ss_pred HHHHHHHHCCCCCEEEEec-CCCcc--cc------ccccCCHHHHHHHHHHcCCceEEec-cc
Q 021627 232 AALLIRKLQSTYPVFFLTN-GGAQT--CT------DVRRSSLDEAIKVCLAGGLQGIVSE-VR 284 (310)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~-~~~~~--~~------~~~~~~l~~~~~~~~~~~~~~i~~~-~~ 284 (310)
.+..+++..|++++..+.. ++... +. ..|..-+..+++++++.|++||.++ ++
T Consensus 56 ~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we 118 (318)
T cd02876 56 WIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWS 118 (318)
T ss_pred HHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechh
Confidence 3566777777777764321 11110 00 1122346788999999999999998 44
No 184
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=34.57 E-value=1.9e+02 Score=29.45 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHCCCCCEEEEecCCCcc-ccccccCCHHHHHHHHHHcCCceEEecc--cccccChHHHHHHHHhCCEEEe
Q 021627 229 QPDAALLIRKLQSTYPVFFLTNGGAQT-CTDVRRSSLDEAIKVCLAGGLQGIVSEV--RAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
.|+-|+.+|+..|+.++..|..+...+ |.....+-++..++.+.++|++.+-+-. +.+..-...++.+++.|+.+.+
T Consensus 62 pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~ 141 (596)
T PRK14042 62 PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQG 141 (596)
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEE
Confidence 488899999999999998777443211 1111111245567777888887765432 2221234577888888876643
No 185
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=34.43 E-value=59 Score=32.60 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 262 SSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 262 ~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
..++.+++.+++.|++.|++-|-.|.-++++.+.+.++|+.++
T Consensus 61 L~~dkIi~Aa~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfI 103 (645)
T COG4770 61 LDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFI 103 (645)
T ss_pred ccHHHHHHHHHHhCcccccCCccccccCHHHHHHHHHCCcEEE
Confidence 3568889999999999999999988889999999999998654
No 186
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=34.31 E-value=2.6e+02 Score=23.39 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=4.6
Q ss_pred HHHHcCCceEE
Q 021627 270 VCLAGGLQGIV 280 (310)
Q Consensus 270 ~~~~~~~~~i~ 280 (310)
.+...|++++.
T Consensus 75 ~~~~~g~dgv~ 85 (211)
T cd00429 75 AFAKAGADIIT 85 (211)
T ss_pred HHHHcCCCEEE
Confidence 33344444443
No 187
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=34.19 E-value=3.7e+02 Score=24.60 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC--------HH-HHHHHHH---HCC-CCCEEEEecCCCccccccccCCHHHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQ--------PD-AALLIRK---LQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVC 271 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~--------~~-~l~~l~~---~~p-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 271 (310)
..+..+++.-++. ..+++++-.. .+ ....++. ..+ .+|+.+-.+.+. ++ +.+..|
T Consensus 29 e~~~avi~AAee~--~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~---------~~-e~i~~a 96 (286)
T PRK08610 29 EFTQAILEASQEE--NAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGS---------SF-EKCKEA 96 (286)
T ss_pred HHHHHHHHHHHHH--CCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCC---------CH-HHHHHH
Confidence 4566666666655 3466665422 12 2222332 222 378887776653 33 445567
Q ss_pred HHcCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 272 LAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 272 ~~~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.+.|++.|.++.+.+ ..+.+.++.+|+.|..|
T Consensus 97 i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 134 (286)
T PRK08610 97 IDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSV 134 (286)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 888999999998765 24678999999999765
No 188
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=34.13 E-value=1.7e+02 Score=29.69 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCc-cccccccCCHHHHHHHHHHcCCceEEeccc--ccccChHHHHHHHHhCCEE
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~l~~~~~lv~~~~~~Gl~v 303 (310)
-.++.++.+++..|+.++..+..+... .|.....+-+...++.+.+.|++.+.+-.. .+..-...++.+|++|+.+
T Consensus 62 ~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 62 DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 347777777777777777655532110 010000012345566677777776655421 1111224667777777753
No 189
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.09 E-value=21 Score=31.65 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=5.0
Q ss_pred HHHHHHHHhcC
Q 021627 209 AILKVVFEHAQ 219 (310)
Q Consensus 209 ~vl~~l~~~~~ 219 (310)
.+++.++++++
T Consensus 120 ~~~~~~~~~g~ 130 (242)
T cd04724 120 EFREAAKEYGL 130 (242)
T ss_pred HHHHHHHHcCC
Confidence 34444444444
No 190
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=33.76 E-value=1e+02 Score=24.36 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 267 AIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+.+++.+.|++.+.+.. + .|.-...++++|++|+.
T Consensus 57 ~a~~l~~~gvdvvi~~~--i--G~~a~~~l~~~GIkv~~ 91 (121)
T COG1433 57 IAELLVDEGVDVVIASN--I--GPNAYNALKAAGIKVYV 91 (121)
T ss_pred HHHHHHHcCCCEEEECc--c--CHHHHHHHHHcCcEEEe
Confidence 56778888888888663 2 77888888888888875
No 191
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.64 E-value=66 Score=29.97 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecC
Q 021627 48 FPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRD 102 (310)
Q Consensus 48 ~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkD 102 (310)
..+|.|||-=|+.++ .--|--.+.+..|.+.|||.|-+-.+.|.|
T Consensus 12 ~~~~~iIAEig~NHn----------G~le~A~~lIdaAk~aGADavKfQt~~~~d 56 (347)
T COG2089 12 DKKPFIIAEIGANHN----------GDLERAKELIDAAKEAGADAVKFQTFYTPD 56 (347)
T ss_pred CCCcEEEeeeccccc----------CcHHHHHHHHHHHHHcCcceeeeecccccc
Confidence 579999999999875 456667788899999999999988876665
No 192
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=33.38 E-value=1.1e+02 Score=26.52 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEeecC
Q 021627 265 DEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGE 308 (310)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv 308 (310)
.+.++.+...++++|.+.....-.....+++++++|++|+.+..
T Consensus 45 ~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~ 88 (257)
T PF13407_consen 45 IEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDS 88 (257)
T ss_dssp HHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEec
Confidence 44556666778888887644332345788999999999888753
No 193
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=33.31 E-value=4.5e+02 Score=25.48 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCC-CEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc
Q 021627 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTY-PVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA 285 (310)
Q Consensus 207 v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 285 (310)
+.-+++.+++.-..-+++++++.+.--+.+++..++. ...|+--+ .....-++...+..+.+++-...
T Consensus 65 ~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D-----------~~~~v~rFl~~~~P~l~Ii~EtE 133 (419)
T COG1519 65 ALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLD-----------LPIAVRRFLRKWRPKLLIIMETE 133 (419)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcC-----------chHHHHHHHHhcCCCEEEEEecc
Confidence 3445555555544558999999999999999988874 22333111 11234456666777655555554
Q ss_pred cccChHHHHHHHHhCCEEE
Q 021627 286 IFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 286 l~~~~~lv~~~~~~Gl~v~ 304 (310)
+ -|.++..++++|.+++
T Consensus 134 l--WPnli~e~~~~~~p~~ 150 (419)
T COG1519 134 L--WPNLINELKRRGIPLV 150 (419)
T ss_pred c--cHHHHHHHHHcCCCEE
Confidence 5 7889999988887665
No 194
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.30 E-value=1.9e+02 Score=28.54 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCc-cccccccCCHHHHHHHHHHcCCceEEecc--cccccChHHHHHHHHhCCEE
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEV--RAIFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~l~~~~~lv~~~~~~Gl~v 303 (310)
-.++-|+.+++..|+.++..|..+... .+......-.+..++.+.++|++.+-+-. +....-...++.+|++|+.+
T Consensus 70 dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~ 148 (468)
T PRK12581 70 DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEA 148 (468)
T ss_pred CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEE
Confidence 358889999999999888877653221 11110001235567777888887765532 12222346778888888874
No 195
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=33.00 E-value=3.2e+02 Score=24.10 Aligned_cols=99 Identities=7% Similarity=0.000 Sum_probs=60.2
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCccccccCccccccccccCHHHHhccCCCCCCCCCCCcccc
Q 021627 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLR 152 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l~~~~~~g~~~~~~~~ 152 (310)
..-=|..+++..+.++|+ ||+-++.++-+.+= .-++. ++|..-.+.+|++..+.
T Consensus 67 y~~v~d~~~L~wlan~g~--iE~H~w~s~~~~~e-----~PD~~----vfDLDP~~~~f~~v~~~--------------- 120 (228)
T cd04864 67 HVLCDDAATLVYLADQAS--ITPHVWLSRADDLE-----HPDLM----VFDLDPSADDIEAVRTA--------------- 120 (228)
T ss_pred eEEeCCHHHHHHHHHcCc--EEeeCCCCCCCCCC-----CCCEE----EEecCCCCCCHHHHHHH---------------
Confidence 456689999999999996 99988876654210 01110 12222223356655543
Q ss_pred cccCCccccccccCCCCccCHHHHHHhcC----------CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhc
Q 021627 153 KTKDGRIFEWKVEKDTPLCTLQEAFEKVD----------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHA 218 (310)
Q Consensus 153 ~~~~~~~~~~~~~~~~~iptL~evL~~~~----------~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~ 218 (310)
--.+.|+|+.+. +++++.+=|+..- .-+....+.+.+.+.+.+..
T Consensus 121 -----------------A~~~r~~L~~~gL~~f~KTSG~kGlHv~vPl~~~~----~~~~~r~fa~~lA~~l~~~~ 175 (228)
T cd04864 121 -----------------ALAVRELLDELGLPSFVKTTGSRGFHVVVPLDGRG----DFDDVRAFAAEAADALAKRD 175 (228)
T ss_pred -----------------HHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCC----CHHHHHHHHHHHHHHHHHHC
Confidence 123666666653 4788999888632 23455678888888776653
No 196
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=32.39 E-value=2.7e+02 Score=23.66 Aligned_cols=10 Identities=10% Similarity=0.424 Sum_probs=4.7
Q ss_pred HHHHHHHcCC
Q 021627 267 AIKVCLAGGL 276 (310)
Q Consensus 267 ~~~~~~~~~~ 276 (310)
.++.++..|+
T Consensus 101 ~~~~~~~~~~ 110 (220)
T PRK05581 101 LLQLIKSAGI 110 (220)
T ss_pred HHHHHHHcCC
Confidence 3444445554
No 197
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=32.10 E-value=1.2e+02 Score=28.66 Aligned_cols=60 Identities=7% Similarity=0.137 Sum_probs=36.3
Q ss_pred EecCCHHHHHHHHHHCCCCCEEEEecCCCccccc--cccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 225 FSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTD--VRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 225 ~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
+..++++.+...++ .++++.+..........+ .|...+...++++++.|++||.++.+..
T Consensus 62 ~~~~~~~~~~~A~~--~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p 123 (358)
T cd02875 62 FGDIDDELLCYAHS--KGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQP 123 (358)
T ss_pred cCCCCHHHHHHHHH--cCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCC
Confidence 44566666665544 456665442211110011 2233567889999999999999998865
No 198
>COG2923 DsrF Uncharacterized protein involved in the oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=32.01 E-value=55 Score=25.69 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=41.5
Q ss_pred CcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCC
Q 021627 49 PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN 111 (310)
Q Consensus 49 ~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~ 111 (310)
++...+.+++-.| -+++.+|+..+....+-.-|.+|.+-.||++-+.-+.
T Consensus 2 k~~afvf~~aP~G-------------s~~~rEgLda~la~~a~~~~~~vffi~DGV~~L~~~Q 51 (118)
T COG2923 2 KKLAFVFRTAPHG-------------SEAGREGLDAALATSAFSLETGVFFIGDGVFQLLPGQ 51 (118)
T ss_pred ceEEEEEecCCCc-------------cHHHHhHHHHHHHHhhcccccceEEEccchhhhcCCC
Confidence 3556677777665 7899999999999999999999999999998777653
No 199
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=31.75 E-value=1e+02 Score=28.88 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=6.8
Q ss_pred cCHHHHHHhcC
Q 021627 171 CTLQEAFEKVD 181 (310)
Q Consensus 171 ptL~evL~~~~ 181 (310)
.+.+|+++.++
T Consensus 79 l~~eeI~~~a~ 89 (351)
T TIGR03700 79 MSLEEIVARVK 89 (351)
T ss_pred CCHHHHHHHHH
Confidence 36677766654
No 200
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.64 E-value=2e+02 Score=26.90 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCc
Q 021627 265 DEAIKVCLAGGLQ 277 (310)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (310)
.+.++++++.|..
T Consensus 117 ~~~i~~ak~~G~~ 129 (333)
T TIGR03217 117 EQHIGMARELGMD 129 (333)
T ss_pred HHHHHHHHHcCCe
Confidence 4455566666654
No 201
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=31.46 E-value=2.5e+02 Score=24.01 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=22.8
Q ss_pred HHHHHcCCceEEeccccccc-ChHHHHHHHHhCCEEEe
Q 021627 269 KVCLAGGLQGIVSEVRAIFK-NPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 269 ~~~~~~~~~~i~~~~~~l~~-~~~lv~~~~~~Gl~v~v 305 (310)
+.+.+.|++.+.++...... -.+.++.+++.|+.+++
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v 111 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFV 111 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 45556788877777653211 12466777777777755
No 202
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=31.09 E-value=5.2e+02 Score=25.36 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=37.1
Q ss_pred CCEEEecCCHHHHHHHHHHCC-CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHh
Q 021627 221 RPIMFSSFQPDAALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA 299 (310)
Q Consensus 221 ~~v~~~Sf~~~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~ 299 (310)
-++.+-|+++++++..-+..- ..+..+-... ..++.+.+.++..|+..+..... +-.-.++++.+.++
T Consensus 156 vPLSIDT~dpevleaAleagad~~plI~Sat~----------dN~~~m~~la~~yg~pvVv~~~d-l~~L~~lv~~~~~~ 224 (450)
T PRK04165 156 LPLILCSEDPAVLKAALEVVADRKPLLYAATK----------ENYEEMAELAKEYNCPLVVKAPN-LEELKELVEKLQAA 224 (450)
T ss_pred CCEEEeCCCHHHHHHHHHhcCCCCceEEecCc----------chHHHHHHHHHHcCCcEEEEchh-HHHHHHHHHHHHHc
Confidence 367888888888887766543 3443322211 12445555666666555443322 21123555666666
Q ss_pred CC
Q 021627 300 KL 301 (310)
Q Consensus 300 Gl 301 (310)
|+
T Consensus 225 GI 226 (450)
T PRK04165 225 GI 226 (450)
T ss_pred CC
Confidence 64
No 203
>PRK08508 biotin synthase; Provisional
Probab=31.06 E-value=3.5e+02 Score=24.38 Aligned_cols=13 Identities=0% Similarity=0.090 Sum_probs=9.9
Q ss_pred CccCHHHHHHhcC
Q 021627 169 PLCTLQEAFEKVD 181 (310)
Q Consensus 169 ~iptL~evL~~~~ 181 (310)
+..+.+|+++.+.
T Consensus 38 ~~~s~eeI~~~a~ 50 (279)
T PRK08508 38 KRKDIEQIVQEAK 50 (279)
T ss_pred cCCCHHHHHHHHH
Confidence 4468899998865
No 204
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=30.97 E-value=78 Score=32.55 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 207 v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
.-++....-+.++. .+.|-|.. +-+.+-|++.-+ .|+...+..+. ..+..+.++++.|++.+++.+++.+-.+
T Consensus 45 aIRvFRa~tEL~~~-tvAiYseq-D~~sMHRqKADE---aY~iGk~l~PV--~AYL~ideii~iak~~~vdavHPGYGFL 117 (1176)
T KOG0369|consen 45 AIRVFRAATELSMR-TVAIYSEQ-DRLSMHRQKADE---AYLIGKGLPPV--GAYLAIDEIISIAKKHNVDAVHPGYGFL 117 (1176)
T ss_pred hhHHHHHHhhhcce-EEEEEecc-chhhhhhhcccc---ceecccCCCch--hhhhhHHHHHHHHHHcCCCeecCCcccc
Confidence 33344444444543 45555533 334444444322 23333332111 1123578999999999999999999888
Q ss_pred ccChHHHHHHHHhCCEEE
Q 021627 287 FKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 287 ~~~~~lv~~~~~~Gl~v~ 304 (310)
..+.++.+.+.++|+.++
T Consensus 118 SErsdFA~av~~AGi~fi 135 (1176)
T KOG0369|consen 118 SERSDFAQAVQDAGIRFI 135 (1176)
T ss_pred ccchHHHHHHHhcCceEe
Confidence 677789999999999875
No 205
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.69 E-value=3.9e+02 Score=23.76 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=57.9
Q ss_pred ccCHHHHHHhcC-CcceEEEEeccCCc---cccc-H--HHHHHHHHHHHHHHHHhcCCCCEEE---------ecCCHHHH
Q 021627 170 LCTLQEAFEKVD-QSVGFNVELKFDDQ---LVYT-E--EELTHALEAILKVVFEHAQGRPIMF---------SSFQPDAA 233 (310)
Q Consensus 170 iptL~evL~~~~-~~~~l~IEiK~~~~---~~~~-~--~~~~~~v~~vl~~l~~~~~~~~v~~---------~Sf~~~~l 233 (310)
.-.++++.+.+. ..+.+.|++|.... ..+. + .........+++.+.+.+.. .+++ +.+|.+.+
T Consensus 110 ~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~-~ii~~~i~~~G~~~G~d~~~i 188 (258)
T PRK01033 110 PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAG-EILLNSIDRDGTMKGYDLELL 188 (258)
T ss_pred HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCC-EEEEEccCCCCCcCCCCHHHH
Confidence 335777777775 36888999885410 0000 0 00001123444555555432 3443 45778999
Q ss_pred HHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 234 LLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 234 ~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
+.+++. .++|+..- ++. .+.+++.+..+..|++++.+-
T Consensus 189 ~~~~~~-~~ipvIas--GGv--------~s~eD~~~l~~~~GvdgVivg 226 (258)
T PRK01033 189 KSFRNA-LKIPLIAL--GGA--------GSLDDIVEAILNLGADAAAAG 226 (258)
T ss_pred HHHHhh-CCCCEEEe--CCC--------CCHHHHHHHHHHCCCCEEEEc
Confidence 999886 67887543 332 255666666667899988764
No 206
>PRK14057 epimerase; Provisional
Probab=30.61 E-value=1.9e+02 Score=25.98 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHCCCCC--EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCC
Q 021627 227 SFQPDAALLIRKLQSTYP--VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL 301 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~--~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl 301 (310)
+|.+++++.+++ ++| +=+.+. ..+..++...+.|++.|.++++....-.+.++.+|++|.
T Consensus 63 tfGp~~i~~i~~---~~p~DvHLMV~------------~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~ 124 (254)
T PRK14057 63 TVGPWAVGQLPQ---TFIKDVHLMVA------------DQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTV 124 (254)
T ss_pred ccCHHHHHHhcc---CCCeeEEeeeC------------CHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCC
Confidence 788899888865 333 112221 123444555677888888887743222367788888875
No 207
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=30.53 E-value=4.2e+02 Score=24.10 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 242 TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.+|+.+-.+.+. ++ +.+..|.+.|++.|.++.+.+ ..+.++++.+|+.|..|
T Consensus 69 ~VPV~lHLDH~~---------~~-~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~V 126 (276)
T cd00947 69 SVPVALHLDHGS---------SF-ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSV 126 (276)
T ss_pred CCCEEEECCCCC---------CH-HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 688887766653 22 345566788999999987765 24678999999998765
No 208
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=30.41 E-value=68 Score=24.42 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 261 RSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
..+.+..+++|++.+++.+++-.+..+ ...+++.++++|+.|+.
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~pL-~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEAPL-VAGLADALRAAGIPVFG 91 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHHHH-HTTHHHHHHHTT-CEES
T ss_pred CCCHHHHHHHHHHcCCCEEEECChHHH-HHHHHHHHHHCCCcEEC
Confidence 346789999999999999888765443 35799999999988763
No 209
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=30.34 E-value=2e+02 Score=26.28 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=39.8
Q ss_pred CCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 241 STYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 241 p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
+.+|+.+=.+.+. ++ +.+..|.+.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 76 ~~VPV~lHLDHg~---------~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 76 YGVPVALHLDHGA---------SE-EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred CCCcEEEECCCCC---------CH-HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3788887776653 23 456677788999999988765 24678999999999866
No 210
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.25 E-value=2.6e+02 Score=27.77 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCcc-ccccccCCHHHHHHHHHHcCCceEEecc--cccccChHHHHHHHHhCCEE
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQT-CTDVRRSSLDEAIKVCLAGGLQGIVSEV--RAIFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~l~~~~~lv~~~~~~Gl~v 303 (310)
-.++.|+.+++..|+.++.-+..+.... |.....+-.+..++.+.+.|++.+.+-. +.+..-...++.++++|..+
T Consensus 62 dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~ 140 (499)
T PRK12330 62 DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHA 140 (499)
T ss_pred CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeE
Confidence 4588899999999999988776533211 1111111345667777888888766532 22222346778888888855
No 211
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=29.80 E-value=3.6e+02 Score=23.11 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=61.1
Q ss_pred cCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCC--C-ccc
Q 021627 180 VDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGG--A-QTC 256 (310)
Q Consensus 180 ~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~--~-~~~ 256 (310)
+++++-+....+..+.- +. ......+.+.+.+.|. ..++.-+++.++.+++. .++|+..++... . ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~----~~~~~~~a~a~~~~G~---~~~~~~~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~ 73 (221)
T PRK01130 3 LKGGLIVSCQALPGEPL-HS----PEIMAAMALAAVQGGA---VGIRANGVEDIKAIRAV-VDVPIIGIIKRDYPDSEVY 73 (221)
T ss_pred cCCCEEEEecCCCCCCC-CC----HHHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHh-CCCCEEEEEecCCCCCCce
Confidence 44566677777743321 11 1234445555555543 22332347888888875 578876443211 0 011
Q ss_pred cccccCCHHHHHHHHHHcCCceEEeccccc-----ccChHHHHHHHH-hCCEEEe
Q 021627 257 TDVRRSSLDEAIKVCLAGGLQGIVSEVRAI-----FKNPGAIKKIKE-AKLCLVS 305 (310)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l-----~~~~~lv~~~~~-~Gl~v~v 305 (310)
.+ ...+.++.+...|++.+.+..... ....++++.+|+ .|+.+.+
T Consensus 74 ~~----~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~ 124 (221)
T PRK01130 74 IT----PTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA 124 (221)
T ss_pred EC----CCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE
Confidence 11 112345777888998777654321 112478888888 7877765
No 212
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=29.51 E-value=2.8e+02 Score=21.75 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccccc
Q 021627 209 AILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK 288 (310)
Q Consensus 209 ~vl~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~ 288 (310)
++.+++++.+..+--+...-|-+....++.=+-+|.++-...++- ..+.-++...=...+..|.-+... .
T Consensus 13 ei~~~i~~~~~~~~ev~i~sDmeAAm~vK~G~aDYY~GACnTGgG--------gALamAIallG~~~C~Tvs~pg~~--~ 82 (117)
T PF10941_consen 13 EIAELIEKLGPGKVEVTIKSDMEAAMAVKSGQADYYLGACNTGGG--------GALAMAIALLGYGKCATVSMPGKI--P 82 (117)
T ss_pred HHHHHHHHHCCCcEEEEEechHHHHHHhhcCCcCEeEeecCCCcc--------HHHHHHHHHhCccceeEeecCCCC--C
Confidence 445556666544333333448888888887777888876643321 023323333222334444444443 4
Q ss_pred ChHHHHHHHHhCCEEEeecCC
Q 021627 289 NPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 289 ~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
+++-|++.=+.|+..+.+|.+
T Consensus 83 ~eeeI~~~v~~GK~AFGft~~ 103 (117)
T PF10941_consen 83 SEEEIRKEVAEGKKAFGFTAQ 103 (117)
T ss_pred CHHHHHHHHHcCCeeeeccHH
Confidence 889999999999999999875
No 213
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=28.82 E-value=3.3e+02 Score=26.51 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=55.4
Q ss_pred CHHHHHHhcC------CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHC----
Q 021627 172 TLQEAFEKVD------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQ---- 240 (310)
Q Consensus 172 tL~evL~~~~------~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~---- 240 (310)
.|+++++.+. .+..+.+|.-... +-++.++.+++.|..+ .+=++||+.++++.+++.+
T Consensus 132 ~l~~ll~~i~~~~~l~~~~eitiE~~p~~-----------~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~ 200 (449)
T PRK09058 132 DLARLITALREYLPLAPDCEITLEGRING-----------FDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREE 200 (449)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCcCc-----------CCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHH
Confidence 3455555543 2456777765432 2345566777777543 2237899999998875432
Q ss_pred -------------CCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc
Q 021627 241 -------------STYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (310)
Q Consensus 241 -------------p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 283 (310)
..+.+-++++.+.+. ..++...++++.+++.+.|.+..
T Consensus 201 ~~~~i~~l~~~g~~~v~~DlI~GlPgqT-----~e~~~~~l~~~~~l~~~~is~y~ 251 (449)
T PRK09058 201 VLARLEELVARDRAAVVCDLIFGLPGQT-----PEIWQQDLAIVRDLGLDGVDLYA 251 (449)
T ss_pred HHHHHHHHHhCCCCcEEEEEEeeCCCCC-----HHHHHHHHHHHHhcCCCEEEEec
Confidence 233334554432221 12456667888888888777643
No 214
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=28.27 E-value=4.2e+02 Score=23.40 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=75.0
Q ss_pred cccccccCCCccccccccCCC--CC--cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecC
Q 021627 27 HSPRVCKGVNEDCDETKSGYK--FP--KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRD 102 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~--~~--~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkD 102 (310)
...+|++|....|=..+.... +. +..-+.|.|...+ ..-=|..+++..+.++|+ ||+-++.++-
T Consensus 25 tl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~~~~~----------y~~v~d~~~Lvwlan~g~--iE~H~w~~r~ 92 (227)
T cd04862 25 SLVRCPDGIGGECFFQKHAGAGLPPGVEQLEIEESGGTEP----------YLYIEDAEGLLALVQMGV--LEFHTWGARI 92 (227)
T ss_pred EeEECCCCCCCCceeecCCCCCCCCceEEEeeccCCCccc----------eEEeCCHHHHHHHHHhCc--EEeeCCCCCC
Confidence 345666666655555543322 11 1222444443322 456689999999999996 9998888765
Q ss_pred CeEEEecCCCccccccCccccccc-cccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC
Q 021627 103 GCPVIFHDNFIFTKDEGEIIEKRV-TDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD 181 (310)
Q Consensus 103 g~~Vv~HD~~l~r~t~g~~~~~~i-~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~ 181 (310)
+.+= ..++. ++|..- .+.+|++..+. -..+.|+|+.+.
T Consensus 93 ~~~e-----~PD~l----vfDLDP~~~~~f~~v~~~--------------------------------A~~~r~~L~~lg 131 (227)
T cd04862 93 DRLE-----RPDRI----VFDLDPGPGVPWKAVVEA--------------------------------ALLVRELLDELG 131 (227)
T ss_pred CCCC-----CCCEE----EEECCCCCCCCHHHHHHH--------------------------------HHHHHHHHHHcC
Confidence 4210 01100 112111 23455555443 124666666643
Q ss_pred ----------CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHh
Q 021627 182 ----------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEH 217 (310)
Q Consensus 182 ----------~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~ 217 (310)
+++++.+=|+..- .-+....+.+.+.+.+.+.
T Consensus 132 L~~~~KTSG~kGlHV~vPl~~~~----~~~~~r~fa~~lA~~l~~~ 173 (227)
T cd04862 132 LESFVKTSGGKGLHVVVPLAPRA----GWDEVKAFAKALAQHLART 173 (227)
T ss_pred CccceEccCCCeEEEEEEcCCCC----CHHHHHHHHHHHHHHHHHH
Confidence 4789999998642 2344567788887777665
No 215
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=28.16 E-value=3.6e+02 Score=25.53 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=47.7
Q ss_pred cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHC----------------CCCCE
Q 021627 183 SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQ----------------STYPV 245 (310)
Q Consensus 183 ~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~----------------p~~~~ 245 (310)
...+.+|.-..+ +-...++.+++.|..+ .+=++||++++++.+.+.. .++.+
T Consensus 90 ~~eit~E~~P~~-----------i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~ 158 (380)
T PRK09057 90 DIEITLEANPTS-----------VEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSF 158 (380)
T ss_pred CccEEEEECcCc-----------CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEE
Confidence 356888876432 2235566777777543 2337899999998865432 23333
Q ss_pred EEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 246 FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
-++++-+.+.. .++...++.+...+.+.|.+.
T Consensus 159 dli~GlPgqt~-----~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 159 DLIYARPGQTL-----AAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred EeecCCCCCCH-----HHHHHHHHHHHhcCCCeEEee
Confidence 34444222111 134555667777787766654
No 216
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=28.09 E-value=2.9e+02 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 266 EAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
+-++.+...|+++++.+.. ++++++.++..|..+.
T Consensus 74 ~~~~~a~~aGA~fivsp~~----~~~v~~~~~~~~~~~~ 108 (206)
T PRK09140 74 EQVDRLADAGGRLIVTPNT----DPEVIRRAVALGMVVM 108 (206)
T ss_pred HHHHHHHHcCCCEEECCCC----CHHHHHHHHHCCCcEE
Confidence 3456677788888877643 6677777777776544
No 217
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.91 E-value=3.5e+02 Score=22.36 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCHHHHHH----HHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEE
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALL----IRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIV 280 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~----l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 280 (310)
.+...+++...+.+ .++++..-.++++.. +++..|++.+....+.... .....+.++.....+.+.|.
T Consensus 33 dl~~~ll~~~~~~~--~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~------~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 33 DLMPALLELAAQKG--LRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFG------PEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC------hhhHHHHHHHHHHcCCCEEE
Confidence 46666777666553 467777778777776 6677788887654433211 11233456777777777766
Q ss_pred ecccccccChHHHHHHHHhC
Q 021627 281 SEVRAIFKNPGAIKKIKEAK 300 (310)
Q Consensus 281 ~~~~~l~~~~~lv~~~~~~G 300 (310)
+-.... .-+.++.+.++..
T Consensus 105 vglG~P-kQE~~~~~~~~~l 123 (171)
T cd06533 105 VGLGAP-KQELWIARHKDRL 123 (171)
T ss_pred EECCCC-HHHHHHHHHHHHC
Confidence 654322 0123555554443
No 218
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=27.82 E-value=2.5e+02 Score=27.38 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEE-EecCCHHHHHHHHHHCC---------
Q 021627 173 LQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIM-FSSFQPDAALLIRKLQS--------- 241 (310)
Q Consensus 173 L~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~-~~Sf~~~~l~~l~~~~p--------- 241 (310)
+.++++.+.+ ++.+.++... .+-.++++.+++.|...-.+ +.|+++++++.+++...
T Consensus 263 ~~~l~~~l~~~~i~~~~~~~~------------~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~ 330 (472)
T TIGR03471 263 AEEIARKLGPLGVTWSCNARA------------NVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTR 330 (472)
T ss_pred HHHHHHHHhhcCceEEEEecC------------CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHH
Q ss_pred -------CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCC
Q 021627 242 -------TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL 301 (310)
Q Consensus 242 -------~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl 301 (310)
.+...++++...+...++ .+.++++.+++.+.+.+..-..+....+-+.+++.|+
T Consensus 331 ~~~~~Gi~v~~~~IiGlPget~e~~-----~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 331 DCHKLGIKVHGTFILGLPGETRETI-----RKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred HHHHCCCeEEEEEEEeCCCCCHHHH-----HHHHHHHHhcCCCceeeeecccCCCcHHHHHHHHCCC
No 219
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=27.50 E-value=74 Score=28.90 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCCc
Q 021627 76 ENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (310)
Q Consensus 76 ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l 113 (310)
.+--.++..-++.|+++++++++...++.+.++|....
T Consensus 33 ~~Q~~~i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~~ 70 (279)
T cd08586 33 QCQDWSIAEQLNAGIRFLDIRLRLIDNNDLAIHHGPFY 70 (279)
T ss_pred ecCCCCHHHHHhcCCeEEEEEeeecCCCeEEEEccCcc
Confidence 34445677888899999999999988899999997654
No 220
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=27.50 E-value=1.1e+02 Score=27.86 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHcCCceEEecccccccCh-------HHH----HHHHHhCCEEEe
Q 021627 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNP-------GAI----KKIKEAKLCLVS 305 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~~~~l~~~~-------~lv----~~~~~~Gl~v~v 305 (310)
.+...+++++..|++||.++.+.+ .+ .++ +.+|+.|+.+.+
T Consensus 92 fi~~iv~~~~~~~~dGidiD~E~~--~~~d~~~~~~fl~eL~~~l~~~~~~lsv 143 (298)
T cd06549 92 FIANIAAYLERNQADGIVLDFEEL--PADDLPKYVAFLSELRRRLPAQGKQLTV 143 (298)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCC--ChhHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 467889999999999999998865 32 233 344566776654
No 221
>PRK00211 sulfur relay protein TusC; Validated
Probab=26.87 E-value=75 Score=24.84 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEEEecCCeEEEecCCC
Q 021627 75 KENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (310)
Q Consensus 75 pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~ 112 (310)
-|.+.+|+..|+...+-.-|++|.+..||+..+.-+..
T Consensus 15 ~~~~~eaLd~ala~~a~~~~v~vff~~DgV~~l~~~q~ 52 (119)
T PRK00211 15 TASGREGLDALLATSAFTEDIGVFFIDDGVFQLLPGQQ 52 (119)
T ss_pred CHHHHHHHHHHHHHhcccCCeeEEEEhhhHHHHhcCCC
Confidence 67888999989886655569999999999998876543
No 222
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=26.80 E-value=4e+02 Score=23.59 Aligned_cols=83 Identities=10% Similarity=0.003 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCCEEEecCCHHHHHHHHHHCC--CCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccc---c
Q 021627 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQS--TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR---A 285 (310)
Q Consensus 211 l~~l~~~~~~~~v~~~Sf~~~~l~~l~~~~p--~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~---~ 285 (310)
++.+++.|.-+.+=+|.|+.+.+..+.+... .+.+..+... ++ . .-.+.+.+|++.|+..+....- .
T Consensus 114 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~---~~---~--~~~~ll~~~~~~gi~v~a~spl~~G~ 185 (267)
T PRK11172 114 LLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELS---PY---L--QNRKVVAFAKEHGIHVTSYMTLAYGK 185 (267)
T ss_pred HHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecC---CC---C--CcHHHHHHHHHCCCEEEEECCCCCCc
Confidence 4445567778888999999988877765431 1112111111 00 0 0135677777777655443211 1
Q ss_pred cccChHHHHHHHHhCC
Q 021627 286 IFKNPGAIKKIKEAKL 301 (310)
Q Consensus 286 l~~~~~lv~~~~~~Gl 301 (310)
++..+.+-+-+++.|.
T Consensus 186 ~~~~~~l~~~a~~~~~ 201 (267)
T PRK11172 186 VLKDPVIARIAAKHNA 201 (267)
T ss_pred ccCCHHHHHHHHHhCC
Confidence 1223444455555553
No 223
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.73 E-value=3.9e+02 Score=22.54 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=67.2
Q ss_pred CccCHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCC--HHHHHHHHHHCCCCCE
Q 021627 169 PLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQ--PDAALLIRKLQSTYPV 245 (310)
Q Consensus 169 ~iptL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~--~~~l~~l~~~~p~~~~ 245 (310)
-+..+.+.++..+. .-.+.+||-....... .......++.+++.|. ++.+-.|. ...+..+....|++-.
T Consensus 101 ~~~~l~~~l~~~~~~~~~lvlei~e~~~~~~-----~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~l~~d~iK 173 (241)
T smart00052 101 LVPRVLELLEETGLPPQRLELEITESVLLDD-----DESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKRLPVDLLK 173 (241)
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEeChhhhcC-----hHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHhCCCCeEE
Confidence 34556666666432 3478888876321111 1233355666777765 46666664 5556667766554322
Q ss_pred EEEecCCCc--ccccc-ccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEE
Q 021627 246 FFLTNGGAQ--TCTDV-RRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 246 ~~l~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v 303 (310)
.+.... ...+. ...-+...++.++..|+..|.-..+ +++-.+.+++.|...
T Consensus 174 ---ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe----~~~~~~~l~~~Gi~~ 227 (241)
T smart00052 174 ---IDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVE----TPEQLDLLRSLGCDY 227 (241)
T ss_pred ---ECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCC----CHHHHHHHHHcCCCE
Confidence 111000 00000 0113566778888889887776655 778889999988753
No 224
>PRK08227 autoinducer 2 aldolase; Validated
Probab=26.46 E-value=2.2e+02 Score=25.71 Aligned_cols=79 Identities=6% Similarity=0.008 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEeccccc--------ccChHHHHHHHHhCC
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------FKNPGAIKKIKEAKL 301 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l--------~~~~~lv~~~~~~Gl 301 (310)
.-.++......++.++.+=.+.++..+.+.....+-..++.|.++|+++|.+....- ..--++++++++.|+
T Consensus 62 ~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~ 141 (264)
T PRK08227 62 RGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGM 141 (264)
T ss_pred hhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 555555444455666544444433222111111223335677889999888753321 012357789999999
Q ss_pred EEEeecC
Q 021627 302 CLVSYGE 308 (310)
Q Consensus 302 ~v~vwTv 308 (310)
.+.+|..
T Consensus 142 Plla~~p 148 (264)
T PRK08227 142 PVMAVTA 148 (264)
T ss_pred cEEEEec
Confidence 9998864
No 225
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=26.32 E-value=1e+02 Score=22.11 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=27.3
Q ss_pred cCCCCCcceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEE
Q 021627 44 SGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFD 96 (310)
Q Consensus 44 ~~~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~D 96 (310)
...+.+.+.+|+--|.. ...=++-.|++.|-+.|.|-||+.
T Consensus 8 e~I~~~~VrlI~~~g~~------------lGv~~~~eAl~~A~~~~lDLV~v~ 48 (76)
T PF05198_consen 8 EEIRAPEVRLIDEDGEQ------------LGVMSLREALRLAKEKGLDLVEVS 48 (76)
T ss_dssp GG---SEEEEE-TTS-E------------EEEEEHHHHHHHHHHTT-EEEEEE
T ss_pred CCcCCCEEEEECCCCcE------------eceEEHHHHHHHHHHcCCcEEEEc
Confidence 34456677788665553 346778899999999999999877
No 226
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=26.24 E-value=2.5e+02 Score=26.44 Aligned_cols=94 Identities=9% Similarity=0.192 Sum_probs=52.9
Q ss_pred CHHHHHHhcC------CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHC----
Q 021627 172 TLQEAFEKVD------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQ---- 240 (310)
Q Consensus 172 tL~evL~~~~------~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~---- 240 (310)
.|+++++.+. .+..+.+|.-... +-++.++.+++.|..+ .+=++||++++++.+++..
T Consensus 77 ~l~~ll~~i~~~~~~~~~~e~t~e~~p~~-----------i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~ 145 (375)
T PRK05628 77 GLARVLDAVRDTFGLAPGAEVTTEANPES-----------TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGR 145 (375)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCCC-----------CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHH
Confidence 4455555443 2346777765332 3445667777777542 2337899999998765322
Q ss_pred ----------CCCC---EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEe
Q 021627 241 ----------STYP---VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVS 281 (310)
Q Consensus 241 ----------p~~~---~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 281 (310)
..++ +-++++.+.+. ..++.+.++++.+++.+.+.+
T Consensus 146 ~~~a~~~l~~~g~~~v~~dli~GlPgqt-----~~~~~~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 146 AVAAAREARAAGFEHVNLDLIYGTPGES-----DDDWRASLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHHHHHcCCCcEEEEEeccCCCCC-----HHHHHHHHHHHHhcCCCEEEe
Confidence 1233 33444322111 124567778888888877654
No 227
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=26.24 E-value=1.3e+02 Score=27.71 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCEEEEecCCCc--cccc------cccCCHHHHHHHHHHcCCceEEeccccc
Q 021627 233 ALLIRKLQSTYPVFFLTNGGAQ--TCTD------VRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (310)
Q Consensus 233 l~~l~~~~p~~~~~~l~~~~~~--~~~~------~~~~~l~~~~~~~~~~~~~~i~~~~~~l 286 (310)
+..++++.|++++.+.+.+... .+.. .|...+..++++++..+++||.++.+..
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~ 118 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYP 118 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCC
Confidence 6667777888888877765221 1111 1222457788999999999999998765
No 228
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.20 E-value=1.3e+02 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHcCCceEEec-ccccccChHHHHHHHHhCCEEEe
Q 021627 262 SSLDEAIKVCLAGGLQGIVSE-VRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 262 ~~l~~~~~~~~~~~~~~i~~~-~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
.++++.++.|++.|++.+.+. ...+...+.+.+.+++.|+.++.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~ 60 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIP 60 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEE
Confidence 378999999999999977754 44444467888999999988764
No 229
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.79 E-value=3.8e+02 Score=22.11 Aligned_cols=72 Identities=10% Similarity=0.062 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCHHHHH----HHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEE
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQPDAAL----LIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIV 280 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~----~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 280 (310)
.+...+++...+.+ .++++..-+++++. .+++..|++.+.-...... .....++.++...+.+.+.|.
T Consensus 35 dl~~~l~~~~~~~~--~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f------~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 35 DLFPDLLRRAEQRG--KRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF------DEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC------ChhhHHHHHHHHHHcCCCEEE
Confidence 56777777666553 37888888888888 6777888888765544321 112456777788888888777
Q ss_pred eccc
Q 021627 281 SEVR 284 (310)
Q Consensus 281 ~~~~ 284 (310)
+-..
T Consensus 107 vglG 110 (172)
T PF03808_consen 107 VGLG 110 (172)
T ss_pred EECC
Confidence 6543
No 230
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=25.60 E-value=98 Score=28.29 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCC--c-cccc------cccCCHHHHHHHHHHcCCceEEecccccccC
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGA--Q-TCTD------VRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN 289 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~--~-~~~~------~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~ 289 (310)
...+..++.+.|++.+.+.+.+.. . .+.. .+..-+..+++++++.|++||.++.+.....
T Consensus 61 ~~~~~~~~~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~ 129 (343)
T PF00704_consen 61 FKNLKELKAKNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS 129 (343)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST
T ss_pred hhHHHHHHhhccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeecccc
Confidence 344555555666666655543321 0 1100 1122357788899999999999988776443
No 231
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=25.42 E-value=3.2e+02 Score=25.47 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCCH-----------HHHHHHHHHC----CCCCEEEEecCCCccccccccCCHHHHHH
Q 021627 205 HALEAILKVVFEHAQGRPIMFSSFQP-----------DAALLIRKLQ----STYPVFFLTNGGAQTCTDVRRSSLDEAIK 269 (310)
Q Consensus 205 ~~v~~vl~~l~~~~~~~~v~~~Sf~~-----------~~l~~l~~~~----p~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 269 (310)
..+..+++.-++. ..+++++-... .....++... ..+|+.+=.+.+. + .+.+.
T Consensus 35 e~~~avi~AAee~--~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~---------~-~e~i~ 102 (321)
T PRK07084 35 EQLQAIIQACVET--KSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGD---------S-FELCK 102 (321)
T ss_pred HHHHHHHHHHHHh--CCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCC---------C-HHHHH
Confidence 4566666665554 34666664221 1111122222 3678887766543 2 34567
Q ss_pred HHHHcCCceEEeccccc------ccChHHHHHHHHhCCEE
Q 021627 270 VCLAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 270 ~~~~~~~~~i~~~~~~l------~~~~~lv~~~~~~Gl~v 303 (310)
.|.+.|++.|.++.+.+ ..+.+.++.+|..|..|
T Consensus 103 ~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsV 142 (321)
T PRK07084 103 DCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTV 142 (321)
T ss_pred HHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 77889999999998765 24678999999999765
No 232
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=25.01 E-value=3e+02 Score=25.01 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCCCEEEEecCCCccccccccC----CHHHHHHHHHHcCCceEEecccccccChHHHHHHHHh
Q 021627 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRS----SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA 299 (310)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~ 299 (310)
..+++.+++..|+-.+.|+.+....||-..... ...+++++....+++.+++-.+.. +--.++.++++
T Consensus 18 LsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTA--Sa~al~~LR~~ 89 (269)
T COG0796 18 LSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTA--SAVALEDLREK 89 (269)
T ss_pred HHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchH--HHHHHHHHHHh
Confidence 678999999999999999988766665433211 123566667777888888877755 55566666654
No 233
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=24.79 E-value=1.2e+02 Score=28.63 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=54.4
Q ss_pred CHHHHHHhcC--CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHC--------
Q 021627 172 TLQEAFEKVD--QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQ-------- 240 (310)
Q Consensus 172 tL~evL~~~~--~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~-------- 240 (310)
.|+++++.+. ....+.+|.-... +-...++.+++.|..+ .+=++||+.++++.+.+..
T Consensus 76 ~l~~ll~~i~~~~~~eit~E~~P~~-----------~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~a 144 (370)
T PRK06294 76 LIQDILKTLEAPHATEITLEANPEN-----------LSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDA 144 (370)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCC-----------CCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHH
Confidence 4556665553 2456777875432 2345567777777542 2337899999998765422
Q ss_pred ------CCCC---EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 241 ------STYP---VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 241 ------p~~~---~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
..+. +-++++.+.+ ...++...++.+..++.+.+.+.
T Consensus 145 i~~~~~~g~~~v~~Dli~GlPgq-----t~~~~~~~l~~~~~l~~~~is~y 190 (370)
T PRK06294 145 VQECSEHGFSNLSIDLIYGLPTQ-----SLSDFIVDLHQAITLPITHISLY 190 (370)
T ss_pred HHHHHHcCCCeEEEEeecCCCCC-----CHHHHHHHHHHHHccCCCeEEEe
Confidence 1232 2234432211 11245667778888888776654
No 234
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=24.73 E-value=58 Score=23.02 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=17.1
Q ss_pred EEEecCCeEEEecCCCcccccc
Q 021627 97 VQVTRDGCPVIFHDNFIFTKDE 118 (310)
Q Consensus 97 V~lTkDg~~Vv~HD~~l~r~t~ 118 (310)
+.-|+||+-|.+|...+.|..+
T Consensus 43 ~meTkDG~kI~m~gdEV~RL~~ 64 (73)
T PF11525_consen 43 VMETKDGQKITMHGDEVARLDS 64 (73)
T ss_dssp EEEBTTS-EEEEETTEEEEECC
T ss_pred EEEccCCCEEEecchHHHhHHH
Confidence 5679999999999888877654
No 235
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=24.47 E-value=4.2e+02 Score=22.15 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 267 AIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
-++.+...|+++++.+.. ++++++.+++.|..+.
T Consensus 68 ~~~~a~~~Ga~~i~~p~~----~~~~~~~~~~~~~~~i 101 (190)
T cd00452 68 QADAAIAAGAQFIVSPGL----DPEVVKAANRAGIPLL 101 (190)
T ss_pred HHHHHHHcCCCEEEcCCC----CHHHHHHHHHcCCcEE
Confidence 345566677777765543 5667777777666544
No 236
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=24.45 E-value=92 Score=22.10 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.0
Q ss_pred EEEEEEEEecCCeEEEec
Q 021627 92 FIEFDVQVTRDGCPVIFH 109 (310)
Q Consensus 92 ~vE~DV~lTkDg~~Vv~H 109 (310)
-||+|| +-+||..+++-
T Consensus 2 ~VElDv-vikdg~~ilvE 18 (70)
T PF07788_consen 2 EVELDV-VIKDGKVILVE 18 (70)
T ss_pred eeEEEE-EEECCeEEEEE
Confidence 478888 66777777664
No 237
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.90 E-value=2.8e+02 Score=24.30 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCceEEeccccccc---C----hHHHHHHHHhCCE
Q 021627 264 LDEAIKVCLAGGLQGIVSEVRAIFK---N----PGAIKKIKEAKLC 302 (310)
Q Consensus 264 l~~~~~~~~~~~~~~i~~~~~~l~~---~----~~lv~~~~~~Gl~ 302 (310)
....++.+++.|.. +.+....... + .++++.+.+.|..
T Consensus 117 ~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 117 AEEAIEAAKEAGLE-VEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHHHHHHHHCCCe-EEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 44566677777753 3444443321 1 3566777777753
No 238
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.63 E-value=8.5e+02 Score=25.40 Aligned_cols=109 Identities=15% Similarity=-0.003 Sum_probs=58.9
Q ss_pred cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcC------CCCEEEecCCHHHHHHHHHHCCCCCEEEEecCCCccc
Q 021627 183 SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQ------GRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTC 256 (310)
Q Consensus 183 ~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~------~~~v~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~ 256 (310)
.+.+.-|+|..+...-. .....-...+...+.+.|- .++-+|. -+.+.|..+++.. ++|+.. .
T Consensus 49 ~~~vIaEiKraSPs~G~-i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~-Gs~~~l~~vr~~v-~~PvLr--K------ 117 (695)
T PRK13802 49 GIPVIAEIKRASPSKGH-LSDIPDPAALAREYEQGGASAISVLTEGRRFL-GSLDDFDKVRAAV-HIPVLR--K------ 117 (695)
T ss_pred CCeEEEEeecCCCCCCc-CCCCCCHHHHHHHHHHcCCcEEEEecCcCcCC-CCHHHHHHHHHhC-CCCEEe--c------
Confidence 47899999986542100 0000012334444555442 2233333 3678888888763 566531 1
Q ss_pred cccccCCHHHHHHHHHHcCCceEEecccccc--cChHHHHHHHHhCCEEEe
Q 021627 257 TDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF--KNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~--~~~~lv~~~~~~Gl~v~v 305 (310)
|+... ..-+..++.+|+++|.+-...+- .-.++++.+++.|+.+.+
T Consensus 118 -DFIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~Lv 165 (695)
T PRK13802 118 -DFIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLV 165 (695)
T ss_pred -cccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEE
Confidence 11111 12245567788888776655441 023678888888888765
No 239
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=23.62 E-value=3.3e+02 Score=24.02 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=33.0
Q ss_pred CHHHHHHhcCC-cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHHH
Q 021627 172 TLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLI 236 (310)
Q Consensus 172 tL~evL~~~~~-~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~l 236 (310)
.+++.|+.+.. .+.+ +=+-.++.... ......+. ++.+++.|.-+.+=+++|+++.++.+
T Consensus 87 ~~~~sL~~L~~d~iDl-~~lH~~~~~~~---~~~~~~~~-l~~l~~~G~ir~iGvs~~~~~~l~~~ 147 (283)
T PF00248_consen 87 SLERSLERLGTDYIDL-LLLHWPDPSED---ALEEVWEA-LEELKKEGKIRHIGVSNFSPEQLEAA 147 (283)
T ss_dssp HHHHHHHHHTSSSEEE-EEESSSSTTSS---HHHHHHHH-HHHHHHTTSEEEEEEES--HHHHHHH
T ss_pred ccccccccccccchhc-ccccccccccc---ccchhhhh-hhhccccccccccccccccccccccc
Confidence 56777777763 3332 23344433211 12333433 34455667777888999999999888
No 240
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.53 E-value=4.7e+02 Score=22.31 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHh
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA 299 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~ 299 (310)
.+.+.++.+++ .+++|+... ++. .+.+++.+.....|++++.+-- .++.+|.+++++++.
T Consensus 170 ~~~~~~~~i~~-~~~ipvi~~--Ggi--------~~~~d~~~~l~~~gad~V~igr-~~l~~P~~~~~~~~~ 229 (231)
T cd02801 170 ADWDYIAEIKE-AVSIPVIAN--GDI--------FSLEDALRCLEQTGVDGVMIGR-GALGNPWLFREIKEL 229 (231)
T ss_pred CCHHHHHHHHh-CCCCeEEEe--CCC--------CCHHHHHHHHHhcCCCEEEEcH-HhHhCCHHHHhhhhc
Confidence 45677777776 456665543 221 2456666766656899988754 456799999988764
No 241
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=23.22 E-value=5.9e+02 Score=23.43 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHHHHHHH
Q 021627 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (310)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~ 298 (310)
.+++.++.+++.. ++|+... ++. .+.+++.+.....|+++|.+-- .++.+|.+.++++.
T Consensus 181 ~~~~~i~~ik~~~-~iPVi~n--GdI--------~t~~da~~~l~~~g~DgVmiGR-g~l~nP~lf~~~~~ 239 (312)
T PRK10550 181 INWQAIGEIRQRL-TIPVIAN--GEI--------WDWQSAQQCMAITGCDAVMIGR-GALNIPNLSRVVKY 239 (312)
T ss_pred ccHHHHHHHHhhc-CCcEEEe--CCc--------CCHHHHHHHHhccCCCEEEEcH-HhHhCcHHHHHhhc
Confidence 3788888898864 6776443 211 2567777777778999988753 44668888887754
No 242
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=23.20 E-value=1.8e+02 Score=26.23 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEe
Q 021627 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (310)
Q Consensus 264 l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~v 305 (310)
+...+..++++|+..|-+...-. +|.+++.+-+.|+.|+.
T Consensus 38 ~~~d~~l~k~~G~N~iR~~h~p~--~~~~~~~cD~~GilV~~ 77 (298)
T PF02836_consen 38 MERDLELMKEMGFNAIRTHHYPP--SPRFYDLCDELGILVWQ 77 (298)
T ss_dssp HHHHHHHHHHTT-SEEEETTS----SHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHhcCcceEEcccccC--cHHHHHHHhhcCCEEEE
Confidence 44556788999999999866533 78999999999998863
No 243
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=23.04 E-value=2.6e+02 Score=26.37 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=44.8
Q ss_pred HHHHHHH-HHHCCCCCEEEEecCCCcc-ccccccCCHHHHHHHHHHcCCceEEeccccc--------ccChHHHHHHHHh
Q 021627 230 PDAALLI-RKLQSTYPVFFLTNGGAQT-CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------FKNPGAIKKIKEA 299 (310)
Q Consensus 230 ~~~l~~l-~~~~p~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l--------~~~~~lv~~~~~~ 299 (310)
.-.++.. +....++|+.+-.+.++.. +.+.....+-..++.|..+|+++|.+....- ..--++++++|+.
T Consensus 112 ~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~ 191 (348)
T PRK09250 112 LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHEL 191 (348)
T ss_pred HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 5565553 3334567765555444322 1111112233346678889999888753221 0123577899999
Q ss_pred CCEEEeec
Q 021627 300 KLCLVSYG 307 (310)
Q Consensus 300 Gl~v~vwT 307 (310)
|+.+.+|.
T Consensus 192 GlPlv~~~ 199 (348)
T PRK09250 192 GLATVLWS 199 (348)
T ss_pred CCCEEEEe
Confidence 99999985
No 244
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.82 E-value=1.7e+02 Score=27.70 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=59.8
Q ss_pred CccCHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEe------------cCCHHHHHHH
Q 021627 169 PLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFS------------SFQPDAALLI 236 (310)
Q Consensus 169 ~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~------------Sf~~~~l~~l 236 (310)
....+.|+...+..++..-+.+|-.-. .++.+.++ .++.+.+.|. +-+.+. --|++.++++
T Consensus 125 ~~eLv~e~V~~v~~~l~~pVs~KIRI~-----~d~~kTvd-~ak~~e~aG~-~~ltVHGRtr~~kg~~~~pad~~~i~~v 197 (358)
T KOG2335|consen 125 NPELVGEMVSAVRANLNVPVSVKIRIF-----VDLEKTVD-YAKMLEDAGV-SLLTVHGRTREQKGLKTGPADWEAIKAV 197 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEEec-----CcHHHHHH-HHHHHHhCCC-cEEEEecccHHhcCCCCCCcCHHHHHHH
Confidence 345667777777654444466664211 11222333 2233444432 112221 2589999999
Q ss_pred HHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccccccChHHH
Q 021627 237 RKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAI 293 (310)
Q Consensus 237 ~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv 293 (310)
++..|++|+... ++. .++.++-...+..|++||.. .+.++.+|.+.
T Consensus 198 ~~~~~~ipviaN--GnI--------~~~~d~~~~~~~tG~dGVM~-arglL~NPa~F 243 (358)
T KOG2335|consen 198 RENVPDIPVIAN--GNI--------LSLEDVERCLKYTGADGVMS-ARGLLYNPALF 243 (358)
T ss_pred HHhCcCCcEEee--CCc--------CcHHHHHHHHHHhCCceEEe-cchhhcCchhh
Confidence 999999776543 221 25667666767799999875 33445566544
No 245
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.73 E-value=5e+02 Score=22.74 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=54.7
Q ss_pred cCHHHHHHhc-CCcceEEEEec-cCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEe---------cCCHHHHHHHHHH
Q 021627 171 CTLQEAFEKV-DQSVGFNVELK-FDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFS---------SFQPDAALLIRKL 239 (310)
Q Consensus 171 ptL~evL~~~-~~~~~l~IEiK-~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~---------Sf~~~~l~~l~~~ 239 (310)
-.++++.+.+ +.++.+.||.| ...-....-........++++.+.+++. ..+++. .+|.+.++.+++.
T Consensus 110 ~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~-~~ii~tdI~~dGt~~G~d~el~~~~~~~ 188 (232)
T PRK13586 110 NLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELEL-LGIIFTYISNEGTTKGIDYNVKDYARLI 188 (232)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCC-CEEEEecccccccCcCcCHHHHHHHHhC
Confidence 3677888888 45789999994 3110000000001123355555666664 345554 4899999888875
Q ss_pred CCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 240 QSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 240 ~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
+.. + +..+|.. ++++..+. ++.|++++.+-
T Consensus 189 -~~~-v--iasGGv~--------s~~Dl~~l-~~~G~~gvivg 218 (232)
T PRK13586 189 -RGL-K--EYAGGVS--------SDADLEYL-KNVGFDYIIVG 218 (232)
T ss_pred -CCC-E--EEECCCC--------CHHHHHHH-HHCCCCEEEEe
Confidence 543 3 3344432 44444444 57899988764
No 246
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=22.69 E-value=2e+02 Score=24.34 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHHHHHHHcC-CceEEecccccccChHHHHHHHHhCCE
Q 021627 265 DEAIKVCLAGG-LQGIVSEVRAIFKNPGAIKKIKEAKLC 302 (310)
Q Consensus 265 ~~~~~~~~~~~-~~~i~~~~~~l~~~~~lv~~~~~~Gl~ 302 (310)
+.+++|.+..+ ++||..- .+.+++.+|+.|+.
T Consensus 61 ~~~i~~L~~~~~~dGIIST------k~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 61 EAGIEYLKEYGKPDGIIST------KSNLIKRAKKLGLL 93 (175)
T ss_dssp HHHHHHHHHTT--SEEEES------SHHHHHHHHHTT-E
T ss_pred HHHHHHHHHcCCCcEEEeC------CHHHHHHHHHcCCE
Confidence 45666666655 6666632 55667777777764
No 247
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.61 E-value=2.9e+02 Score=26.34 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=48.9
Q ss_pred cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHCC--------------CCC---
Q 021627 183 SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQS--------------TYP--- 244 (310)
Q Consensus 183 ~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~p--------------~~~--- 244 (310)
...+.+|.-..+ +-.+.++.+++.|..+ .+=++||++++++.+.+... .++
T Consensus 101 ~~eit~E~~P~~-----------lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~ 169 (400)
T PRK07379 101 DAEISLEIDPGT-----------FDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFS 169 (400)
T ss_pred CCEEEEEeCCCc-----------CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 356777765332 2345667777777543 23378999999988764321 233
Q ss_pred EEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 245 VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
+-++++.+.+. ..++...++.+..++.+.|.+.
T Consensus 170 ~dlI~GlPgqt-----~e~~~~tl~~~~~l~p~~is~y 202 (400)
T PRK07379 170 LDLISGLPHQT-----LEDWQASLEAAIALNPTHLSCY 202 (400)
T ss_pred EEeecCCCCCC-----HHHHHHHHHHHHcCCCCEEEEe
Confidence 33444432211 1245666777778887766653
No 248
>PRK05926 hypothetical protein; Provisional
Probab=22.51 E-value=2e+02 Score=27.32 Aligned_cols=15 Identities=7% Similarity=-0.137 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCEEEe
Q 021627 291 GAIKKIKEAKLCLVS 305 (310)
Q Consensus 291 ~lv~~~~~~Gl~v~v 305 (310)
+.++.+|++|+.+.+
T Consensus 211 ~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 211 EIHKTAHSLGIPSNA 225 (370)
T ss_pred HHHHHHHHcCCcccC
Confidence 567888888887754
No 249
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=22.47 E-value=5.2e+02 Score=22.96 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=39.1
Q ss_pred CHHHHHHhcCCcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCC-HHHHHHHHHHCCCC
Q 021627 172 TLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQ-PDAALLIRKLQSTY 243 (310)
Q Consensus 172 tL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~-~~~l~~l~~~~p~~ 243 (310)
-++|+.+... .+.+|+|..+. ...+....+...+.+ .+-+.+++|- .+.++.+++.....
T Consensus 54 ~~~el~~~~~---~VflDlK~~DI--------pnT~~~~~~~~~~~g-~d~vtvH~~~G~~~~~~~~e~~~~~ 114 (240)
T COG0284 54 ILEELKARGK---KVFLDLKLADI--------PNTVALAAKAAADLG-ADAVTVHAFGGFDMLRAAKEALEAG 114 (240)
T ss_pred HHHHHHHhCC---ceEEeeecccc--------hHHHHHHHHHhhhcC-CcEEEEeCcCCHHHHHHHHHHHhhc
Confidence 4566655553 89999998764 244555555555554 3457777777 67888888766554
No 250
>PRK09989 hypothetical protein; Provisional
Probab=22.20 E-value=2e+02 Score=25.26 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEeec
Q 021627 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYG 307 (310)
Q Consensus 263 ~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwT 307 (310)
++.+.++.++++|+++|-+....-....++.+.+++.|+.+...+
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~ 60 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFN 60 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEec
Confidence 678888999999999988643211223467778889999887643
No 251
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.11 E-value=5.4e+02 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEE
Q 021627 266 EAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (310)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~ 304 (310)
+.++.+...|+++++.+. + ++++++.++++|+.++
T Consensus 82 e~a~~a~~aGA~FiVsP~--~--~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 82 ATAALYIQLGANFIVTPL--F--NPDIAKVCNRRKVPYS 116 (222)
T ss_pred HHHHHHHHcCCCEEECCC--C--CHHHHHHHHHcCCCEe
Confidence 344667888999988774 3 8899999998888665
No 252
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.07 E-value=3.5e+02 Score=24.29 Aligned_cols=8 Identities=13% Similarity=-0.030 Sum_probs=5.1
Q ss_pred EEEeccCC
Q 021627 187 NVELKFDD 194 (310)
Q Consensus 187 ~IEiK~~~ 194 (310)
.||+-.+.
T Consensus 37 ~iE~G~~a 44 (275)
T cd07937 37 SLEVWGGA 44 (275)
T ss_pred EEEccCCc
Confidence 57777653
No 253
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=22.04 E-value=1e+02 Score=22.87 Aligned_cols=37 Identities=30% Similarity=0.267 Sum_probs=28.4
Q ss_pred EEEEEEecCCeEEEecCCCccccccCccccccccccCHHHHhcc
Q 021627 94 EFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSY 137 (310)
Q Consensus 94 E~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~i~~lt~~el~~l 137 (310)
-=||-+-|||+.|.+-|..- .|. -.|.+-.|+|+..-
T Consensus 78 gddvllekdgevvmildsrd----egr---mwikddvwaevteh 114 (124)
T PF11330_consen 78 GDDVLLEKDGEVVMILDSRD----EGR---MWIKDDVWAEVTEH 114 (124)
T ss_pred CCeEEEecCCcEEEEEeccc----cCc---eeeechhHHHHHhh
Confidence 34899999999999988542 243 57888889998764
No 254
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.96 E-value=2.8e+02 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHCCCCCEEEEecCCCcc
Q 021627 227 SFQPDAALLIRKLQSTYPVFFLTNGGAQT 255 (310)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~ 255 (310)
.||..+.+.+|+..|++|+.+.+....+.
T Consensus 96 dFnl~vak~lrk~~p~i~iihYV~PsVWA 124 (381)
T COG0763 96 DFNLRVAKKLRKAGPKIKIIHYVSPSVWA 124 (381)
T ss_pred CCchHHHHHHHHhCCCCCeEEEECcceee
Confidence 59999999999999999999988776543
No 255
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.90 E-value=2.4e+02 Score=26.49 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=49.8
Q ss_pred CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHCC-----------------CC
Q 021627 182 QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQS-----------------TY 243 (310)
Q Consensus 182 ~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~p-----------------~~ 243 (310)
....+.+|..... +-++.++.+++.|..+ .+=++||+.++++.+++... ++
T Consensus 88 ~~~eitiE~nP~~-----------lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v 156 (353)
T PRK05904 88 NNCEFTIECNPEL-----------ITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNI 156 (353)
T ss_pred CCCeEEEEeccCc-----------CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 3456888875432 3346677777777543 23378999999988654221 13
Q ss_pred CEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 244 PVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
.+-++++.+.+. ..++.+.++++.+.+.+.+.+.
T Consensus 157 ~~dlI~GlPgqt-----~e~~~~tl~~~~~l~p~~is~y 190 (353)
T PRK05904 157 SCDFLYCLPILK-----LKDLDEVFNFILKHKINHISFY 190 (353)
T ss_pred EEEEeecCCCCC-----HHHHHHHHHHHHhcCCCEEEEE
Confidence 334444432211 1245667778888887766543
No 256
>PF09614 Cas_Csy2: CRISPR-associated protein (Cas_Csy2); InterPro: IPR013398 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.
Probab=21.68 E-value=2.7e+02 Score=25.62 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=32.5
Q ss_pred cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEE-------ecCCH-HHHHHHHHHCCCCCE
Q 021627 183 SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMF-------SSFQP-DAALLIRKLQSTYPV 245 (310)
Q Consensus 183 ~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~-------~Sf~~-~~l~~l~~~~p~~~~ 245 (310)
.+.|.||+..... .+....+.+.+.+.+.+....+.+..++ .+.+. +.-+.+++..|.+-+
T Consensus 98 ~vSLvie~~g~~~--~~~~~~~~~~~~~~~~l~~~RlAGG~I~~~~~~~~~~~~~~~~~~~~~~l~pGf~L 166 (296)
T PF09614_consen 98 EVSLVIEVEGEDP--NDDEQAEELLEQLKQLLQPMRLAGGSILSIGKPQLYSLPEKDLRRLLRRLMPGFAL 166 (296)
T ss_pred EEEEEEEEecccC--cchhhHHHHHHHHHHHHhhCcccCceEeecCCceEEecCHHHHHHHHHHhCCCeEE
Confidence 6788888887654 1223344667777666654444433333 33342 333344455565543
No 257
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.62 E-value=2e+02 Score=25.15 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEee
Q 021627 262 SSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 262 ~~l~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vw 306 (310)
.++.+.++.+++.|+++|-+....-..-.++.+.++++|+.+...
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 367888888889999888875422111345667778889887754
No 258
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.61 E-value=1.7e+02 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEeecCC
Q 021627 265 DEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (310)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vwTv~ 309 (310)
-++++.+..-.++.+++-...-. =..+++++++.|+.|.+.++.
T Consensus 95 IDame~~~~~~iD~~vLvSgD~D-F~~Lv~~lre~G~~V~v~g~~ 138 (160)
T TIGR00288 95 VEAMELIYNPNIDAVALVTRDAD-FLPVINKAKENGKETIVIGAE 138 (160)
T ss_pred HHHHHHhccCCCCEEEEEeccHh-HHHHHHHHHHCCCEEEEEeCC
Confidence 35566654456666554322100 126889999999999988753
No 259
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=21.54 E-value=81 Score=28.05 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=18.2
Q ss_pred ccccchHHHHHHHHhCCCCEEEEE
Q 021627 73 SIKENTILSFNAAARHPLDFIEFD 96 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~vE~D 96 (310)
.+-+=..+..+.|.+.|||.||++
T Consensus 129 LFiDP~~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 129 LFIDPDPEQIEAAKELGADRVELH 152 (239)
T ss_dssp EEE-S-HHHHHHHHHTT-SEEEEE
T ss_pred EEeCCCHHHHHHHHHcCCCEEEEe
Confidence 566667889999999999999975
No 260
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.36 E-value=1.2e+02 Score=29.55 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=57.2
Q ss_pred cCHHHHHHhcCC------cceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCHHHHHHHHHHCC--
Q 021627 171 CTLQEAFEKVDQ------SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGR-PIMFSSFQPDAALLIRKLQS-- 241 (310)
Q Consensus 171 ptL~evL~~~~~------~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~-~v~~~Sf~~~~l~~l~~~~p-- 241 (310)
+.|+++++.+.. +..+.+|+-.. .+-++.++.+++.|..+ .+=++||++++++.+++...
T Consensus 120 ~~l~~ll~~i~~~~~~~~~~e~tie~~p~-----------~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~ 188 (453)
T PRK13347 120 DQFERLMAALRDAFDFAPEAEIAVEIDPR-----------TVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEE 188 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEEeccc-----------cCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHH
Confidence 456777776642 34667776432 23456777788877542 23377999999888765332
Q ss_pred ------------CC---CEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEec
Q 021627 242 ------------TY---PVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (310)
Q Consensus 242 ------------~~---~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 282 (310)
.+ .+-++++...+ ...++.+.++++..++.+.+.+.
T Consensus 189 ~~~~ai~~lr~~G~~~v~~dli~GlPgq-----t~e~~~~tl~~~~~l~p~~i~~y 239 (453)
T PRK13347 189 MVARAVELLRAAGFESINFDLIYGLPHQ-----TVESFRETLDKVIALSPDRIAVF 239 (453)
T ss_pred HHHHHHHHHHhcCCCcEEEeEEEeCCCC-----CHHHHHHHHHHHHhcCCCEEEEe
Confidence 23 23344442211 11246677888888998877653
No 261
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=21.36 E-value=2.1e+02 Score=24.11 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=34.5
Q ss_pred EEEEeccCCcccccHHHHHHHHHHHHHHHHHhcCCCCEEEecCCHHHHHH-------HHHHCCCCCEEEEecCC
Q 021627 186 FNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALL-------IRKLQSTYPVFFLTNGG 252 (310)
Q Consensus 186 l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~Sf~~~~l~~-------l~~~~p~~~~~~l~~~~ 252 (310)
+-||+|.+.. .+.+.+++++- .|+|.+|.+.+++. +++.+|++-..-+...+
T Consensus 1 V~lDl~~~~g-----------r~~l~~L~~~A----DV~i~n~rpg~~~~lGl~~~~l~~~nP~LV~~~isgfG 59 (191)
T PF02515_consen 1 VALDLKSPEG-----------RAALRRLLATA----DVVIENFRPGVLERLGLDYEALRAINPRLVYCSISGFG 59 (191)
T ss_dssp EEEETTSHHH-----------HHHHHHHHHT-----SEEEEESSTTHHHHTT-SHHHHHHH-TT-EEEEEESS-
T ss_pred CEeeCcCHHH-----------HHHHHHHHHhC----CEEEECCchhhhHhcCCCHHHHHhhCCCCeEEEEEeec
Confidence 3577886532 33445555533 79999999988775 78889999988887765
No 262
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.17 E-value=3.6e+02 Score=24.18 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCCc
Q 021627 264 LDEAIKVCLAGGLQ 277 (310)
Q Consensus 264 l~~~~~~~~~~~~~ 277 (310)
..++++++++.|..
T Consensus 111 ~~~~i~~ak~~G~~ 124 (266)
T cd07944 111 ALPLIKAIKEKGYE 124 (266)
T ss_pred HHHHHHHHHHCCCe
Confidence 34566666666653
No 263
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=21.09 E-value=5.1e+02 Score=22.14 Aligned_cols=12 Identities=0% Similarity=0.055 Sum_probs=6.8
Q ss_pred ccCHHHHHHhcC
Q 021627 170 LCTLQEAFEKVD 181 (310)
Q Consensus 170 iptL~evL~~~~ 181 (310)
....+|+++.+.
T Consensus 23 ~~~~~~~l~~~~ 34 (207)
T PRK11475 23 FSSQSSFQDAMS 34 (207)
T ss_pred eCCHHHHHHHhc
Confidence 345566666654
No 264
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=20.56 E-value=3.7e+02 Score=23.03 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecc
Q 021627 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (310)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 283 (310)
..+.++.+++..|++++..++.... ...+..+...|++|+.+-.
T Consensus 61 G~e~~~~l~~~~p~~~vvvlt~~~~-----------~~~v~~al~~Ga~Gyl~K~ 104 (211)
T COG2197 61 GLEALKQLRARGPDIKVVVLTAHDD-----------PAYVIRALRAGADGYLLKD 104 (211)
T ss_pred hHHHHHHHHHHCCCCcEEEEeccCC-----------HHHHHHHHHcCCCEEEeCC
Confidence 3588888888888888888775431 3445566777888877643
No 265
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=20.34 E-value=6e+02 Score=22.41 Aligned_cols=135 Identities=14% Similarity=0.104 Sum_probs=75.7
Q ss_pred cccccccCCCccccccccCCCCC----cceEEEecCCCCCccCcchhhhcccccchHHHHHHHHhCCCCEEEEEEEEecC
Q 021627 27 HSPRVCKGVNEDCDETKSGYKFP----KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRD 102 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~----~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkD 102 (310)
...+|++|....|=..+...... +..-+.|.|...+ ..-=|..+++..+.++|+ ||+=++.++-
T Consensus 25 tl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~~~~~----------y~~i~d~~~Lvwlan~~~--lE~H~w~sr~ 92 (227)
T cd04861 25 TLVRYPDGIDGESFFQKHAPAGAPDWVRTVEVESEGGTIN----------YLLVNDAAGLVWLANLGA--IELHPWLSRA 92 (227)
T ss_pred EeEECCCCCCCCceeeCCCCCCCCCceEEEeeccCCCccc----------eEEeCCHHHHHHHHHhCc--EEeeCCCCCC
Confidence 34566666655555554333211 2233555554432 567788999999999996 8887777654
Q ss_pred CeEEEecCCCccccccCccccc-cccccCHHHHhccCCCCCCCCCCCcccccccCCccccccccCCCCccCHHHHHHhcC
Q 021627 103 GCPVIFHDNFIFTKDEGEIIEK-RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD 181 (310)
Q Consensus 103 g~~Vv~HD~~l~r~t~g~~~~~-~i~~lt~~el~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~ 181 (310)
+.+= ..|.- ++|. +-.+.+|+++.+. --.+.|+|+.+.
T Consensus 93 ~~~e-~PD~l--------vfDLDP~~~~~f~~v~~~--------------------------------A~~vr~~L~~lg 131 (227)
T cd04861 93 DDLE-RPDRL--------VFDLDPGPGVPFEDVVEA--------------------------------ALLLRELLDELG 131 (227)
T ss_pred CCCC-CCCEE--------EEECCCCCCCCHHHHHHH--------------------------------HHHHHHHHHHcC
Confidence 4210 00100 1111 1224455555443 123666666653
Q ss_pred ----------CcceEEEEeccCCcccccHHHHHHHHHHHHHHHHHhc
Q 021627 182 ----------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHA 218 (310)
Q Consensus 182 ----------~~~~l~IEiK~~~~~~~~~~~~~~~v~~vl~~l~~~~ 218 (310)
+++++.+=|+..- .-+....+++.+.+.+.+..
T Consensus 132 L~~f~KTSG~kGlHV~vPl~~~~----~~~~~r~fa~~iA~~l~~~~ 174 (227)
T cd04861 132 LESFPKTSGGKGLHVYVPLAPRY----TWDEVRAFAKALARELARRL 174 (227)
T ss_pred CccceEccCCCeEEEEEEcCCCC----CHHHHHHHHHHHHHHHHHHC
Confidence 4788899888532 23455677888877776653
No 266
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=1.8e+02 Score=27.39 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=16.8
Q ss_pred ccccchHHHHHHHHhCCCCEE
Q 021627 73 SIKENTILSFNAAARHPLDFI 93 (310)
Q Consensus 73 ~~pENTl~Af~~A~~~Gad~v 93 (310)
.+|-.++..|+.|++.|||.|
T Consensus 10 l~pag~l~~l~~ai~~GADaV 30 (347)
T COG0826 10 LAPAGNLEDLKAAIAAGADAV 30 (347)
T ss_pred ecCCCCHHHHHHHHHcCCCEE
Confidence 577888888888888888775
No 267
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.23 E-value=2.7e+02 Score=19.83 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCceEEecccccccChHHHHHHHHhCCEEEee
Q 021627 266 EAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (310)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~~l~~~~~lv~~~~~~Gl~v~vw 306 (310)
...+++...+++.+.+.. +.+...+.++++|+.|+.+
T Consensus 44 ~~~~~l~~~~v~~li~~~----iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGG----IGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEESC----SCHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEeC----CCHHHHHHHHHCCCEEEEc
Confidence 345666778998888652 3889999999999999987
No 268
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.16 E-value=6e+02 Score=22.30 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred ccCHHHHHHhcC-CcceEEEEeccCCc-c--------cccHHHHHHHHHHHHHHHHHhcCCCCEEEe---------cCCH
Q 021627 170 LCTLQEAFEKVD-QSVGFNVELKFDDQ-L--------VYTEEELTHALEAILKVVFEHAQGRPIMFS---------SFQP 230 (310)
Q Consensus 170 iptL~evL~~~~-~~~~l~IEiK~~~~-~--------~~~~~~~~~~v~~vl~~l~~~~~~~~v~~~---------Sf~~ 230 (310)
+-.++++.+.+. .++.+.+++|.... . +..... .-....++.+.+.+.. .++++ .+++
T Consensus 110 p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~ 186 (253)
T PRK02083 110 PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTG--LDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDL 186 (253)
T ss_pred cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecC--CCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCH
Confidence 345777777775 46788888874100 0 000000 0112233333444432 44443 3667
Q ss_pred HHHHHHHHHCCCCCEEEEecCCCccccccccCCHHHHHHHHHHcCCceEEecccc---cccChHHHHHHHHhCCEE
Q 021627 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA---IFKNPGAIKKIKEAKLCL 303 (310)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~---l~~~~~lv~~~~~~Gl~v 303 (310)
+.+..+.+.. .+|+... ++. .+.++..+..+..|++++.+..-. -+--.++.+.+++.|+.|
T Consensus 187 ~~i~~~~~~~-~ipvia~--GGv--------~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 187 ELTRAVSDAV-NVPVIAS--GGA--------GNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHhhC-CCCEEEE--CCC--------CCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 8889988864 5776543 322 245666665556799888774211 111246778888888875
Done!