Query 021629
Match_columns 310
No_of_seqs 138 out of 1305
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.5E-57 3.3E-62 422.2 24.7 252 36-310 1-264 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-56 2.3E-61 410.8 22.8 262 30-309 6-279 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 6.4E-53 1.4E-57 396.9 25.3 259 34-310 11-287 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 2E-52 4.3E-57 389.4 25.6 254 38-309 1-270 (317)
5 PRK10625 tas putative aldo-ket 100.0 5.2E-52 1.1E-56 390.9 25.2 255 36-310 1-294 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 1.8E-52 3.8E-57 376.2 19.5 215 36-309 3-220 (280)
7 PLN02587 L-galactose dehydroge 100.0 4.7E-50 1E-54 372.9 24.2 244 38-309 1-250 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 7E-48 1.5E-52 346.8 17.6 217 38-309 6-241 (300)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 9.6E-47 2.1E-51 345.4 23.9 236 38-309 1-241 (285)
10 COG4989 Predicted oxidoreducta 100.0 1.1E-46 2.4E-51 326.3 14.4 235 36-309 1-247 (298)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.1E-45 2.4E-50 338.1 19.8 232 50-309 1-237 (283)
12 PRK10376 putative oxidoreducta 100.0 2.9E-45 6.4E-50 337.1 22.1 220 39-309 10-242 (290)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.3E-45 5.1E-50 334.0 21.0 204 46-309 1-208 (267)
14 PRK14863 bifunctional regulato 100.0 2E-45 4.4E-50 338.2 20.3 232 45-309 2-236 (292)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.4E-44 1.8E-48 325.0 20.7 212 37-309 5-218 (275)
16 KOG1576 Predicted oxidoreducta 100.0 2.8E-40 6E-45 288.6 16.5 243 34-309 20-275 (342)
17 COG1453 Predicted oxidoreducta 100.0 9.8E-38 2.1E-42 284.3 17.4 204 36-261 1-211 (391)
18 KOG3023 Glutamate-cysteine lig 98.3 1.6E-06 3.4E-11 75.9 6.6 73 176-253 155-227 (285)
19 PRK13796 GTPase YqeH; Provisio 92.6 2.5 5.3E-05 40.3 12.7 144 49-209 34-180 (365)
20 cd03319 L-Ala-DL-Glu_epimerase 91.9 4.9 0.00011 37.2 13.6 157 73-258 134-291 (316)
21 cd03315 MLE_like Muconate lact 91.1 6.5 0.00014 35.4 13.2 157 74-258 86-243 (265)
22 PRK08609 hypothetical protein; 90.1 11 0.00024 38.1 15.0 166 77-256 351-527 (570)
23 cd03316 MR_like Mandelate race 89.7 10 0.00022 35.7 13.8 159 74-254 140-299 (357)
24 PRK05588 histidinol-phosphatas 88.8 17 0.00037 32.5 17.6 168 75-256 16-219 (255)
25 PRK00164 moaA molybdenum cofac 88.8 18 0.0004 33.6 14.6 161 70-251 47-228 (331)
26 PRK08392 hypothetical protein; 88.7 16 0.00034 31.9 13.7 186 76-307 15-209 (215)
27 COG1748 LYS9 Saccharopine dehy 88.5 3.1 6.8E-05 39.9 9.1 79 76-173 80-158 (389)
28 cd00739 DHPS DHPS subgroup of 87.8 19 0.0004 32.6 13.4 144 142-309 21-171 (257)
29 PRK07535 methyltetrahydrofolat 87.8 13 0.00029 33.6 12.5 137 143-309 23-159 (261)
30 PRK13361 molybdenum cofactor b 86.5 28 0.00061 32.5 14.7 140 70-230 43-195 (329)
31 PRK07945 hypothetical protein; 86.4 29 0.00064 32.6 15.5 160 76-249 112-287 (335)
32 PRK09856 fructoselysine 3-epim 86.2 10 0.00022 34.1 10.9 52 237-304 94-145 (275)
33 PRK07328 histidinol-phosphatas 86.1 26 0.00056 31.7 17.4 164 77-249 20-224 (269)
34 TIGR03597 GTPase_YqeH ribosome 86.0 17 0.00037 34.5 12.7 144 49-209 28-174 (360)
35 PF07021 MetW: Methionine bios 85.7 19 0.00041 31.2 11.5 153 79-259 5-172 (193)
36 cd00740 MeTr MeTr subgroup of 84.7 29 0.00062 31.3 12.9 105 142-255 23-128 (252)
37 TIGR01928 menC_lowGC/arch o-su 84.2 33 0.00072 31.9 13.7 154 74-259 133-287 (324)
38 KOG0023 Alcohol dehydrogenase, 83.1 2.4 5.2E-05 39.5 5.2 154 31-249 169-324 (360)
39 TIGR01496 DHPS dihydropteroate 82.7 36 0.00079 30.7 14.0 141 142-309 20-169 (257)
40 cd00423 Pterin_binding Pterin 82.7 36 0.00078 30.6 13.5 144 142-309 21-171 (258)
41 PRK04452 acetyl-CoA decarbonyl 82.2 19 0.00042 33.6 11.0 96 153-256 83-185 (319)
42 PF01261 AP_endonuc_2: Xylose 81.9 8.7 0.00019 32.4 8.2 88 203-304 27-128 (213)
43 TIGR00542 hxl6Piso_put hexulos 81.8 13 0.00029 33.6 9.7 52 237-304 98-149 (279)
44 TIGR01278 DPOR_BchB light-inde 80.1 45 0.00098 33.3 13.6 105 110-221 70-193 (511)
45 PRK13209 L-xylulose 5-phosphat 79.8 31 0.00068 31.0 11.5 52 237-304 103-154 (283)
46 PRK06740 histidinol-phosphatas 79.5 26 0.00055 33.0 11.0 100 149-250 156-288 (331)
47 TIGR02666 moaA molybdenum cofa 79.0 55 0.0012 30.4 14.2 132 71-221 42-187 (334)
48 PRK13210 putative L-xylulose 5 78.2 35 0.00077 30.6 11.4 52 237-304 98-149 (284)
49 cd03322 rpsA The starvation se 77.9 64 0.0014 30.5 14.1 146 74-254 127-273 (361)
50 TIGR00381 cdhD CO dehydrogenas 77.9 39 0.00084 32.4 11.5 95 156-260 150-254 (389)
51 cd03325 D-galactonate_dehydrat 77.8 58 0.0013 30.7 13.0 159 74-253 124-285 (352)
52 PRK07329 hypothetical protein; 77.0 54 0.0012 29.2 14.1 106 149-256 83-218 (246)
53 COG0159 TrpA Tryptophan syntha 76.7 35 0.00075 31.1 10.5 13 161-173 43-55 (265)
54 PRK14017 galactonate dehydrata 76.6 54 0.0012 31.3 12.5 157 74-254 125-287 (382)
55 cd01965 Nitrogenase_MoFe_beta_ 76.6 26 0.00057 34.0 10.5 105 110-221 66-187 (428)
56 PF03102 NeuB: NeuB family; I 76.2 30 0.00065 31.0 9.9 119 72-210 53-190 (241)
57 cd03327 MR_like_2 Mandelate ra 75.9 61 0.0013 30.4 12.5 158 74-253 121-280 (341)
58 cd03323 D-glucarate_dehydratas 73.5 77 0.0017 30.5 12.8 152 73-255 168-321 (395)
59 TIGR00190 thiC thiamine biosyn 73.3 29 0.00062 33.4 9.3 90 141-259 136-225 (423)
60 cd03174 DRE_TIM_metallolyase D 72.0 20 0.00043 31.9 7.9 105 142-253 16-135 (265)
61 PRK09058 coproporphyrinogen II 72.0 1E+02 0.0022 30.2 14.1 111 141-263 226-336 (449)
62 PRK13352 thiamine biosynthesis 71.7 33 0.0007 33.2 9.3 90 141-259 139-228 (431)
63 COG3623 SgaU Putative L-xylulo 71.5 11 0.00023 33.7 5.6 79 43-136 65-156 (287)
64 cd03324 rTSbeta_L-fuconate_deh 71.2 80 0.0017 30.7 12.3 152 74-253 197-352 (415)
65 cd06543 GH18_PF-ChiA-like PF-C 70.1 91 0.002 28.8 13.6 186 50-258 71-265 (294)
66 cd03329 MR_like_4 Mandelate ra 69.7 1E+02 0.0022 29.2 14.0 155 73-253 143-299 (368)
67 TIGR03822 AblA_like_2 lysine-2 69.1 96 0.0021 28.9 12.0 96 163-259 137-240 (321)
68 PRK14461 ribosomal RNA large s 69.0 53 0.0012 31.4 10.2 94 166-259 232-354 (371)
69 PF05690 ThiG: Thiazole biosyn 69.0 24 0.00051 31.6 7.3 118 126-253 60-182 (247)
70 COG2089 SpsE Sialic acid synth 68.8 1E+02 0.0022 29.0 11.6 124 72-211 87-225 (347)
71 TIGR03822 AblA_like_2 lysine-2 68.4 1E+02 0.0022 28.7 15.6 135 72-219 119-261 (321)
72 PRK14463 ribosomal RNA large s 67.6 63 0.0014 30.6 10.5 90 166-257 211-325 (349)
73 PF01120 Alpha_L_fucos: Alpha- 67.6 23 0.0005 33.4 7.6 37 220-256 122-161 (346)
74 TIGR02370 pyl_corrinoid methyl 67.2 29 0.00062 29.9 7.6 149 73-247 10-164 (197)
75 PRK15408 autoinducer 2-binding 66.8 91 0.002 29.1 11.5 89 126-222 23-111 (336)
76 COG1149 MinD superfamily P-loo 66.2 14 0.00031 33.7 5.5 92 156-258 157-251 (284)
77 COG2102 Predicted ATPases of P 65.8 57 0.0012 28.9 9.0 101 176-305 75-177 (223)
78 PRK14459 ribosomal RNA large s 65.7 76 0.0016 30.4 10.6 94 165-258 241-360 (373)
79 cd03318 MLE Muconate Lactonizi 65.4 1.2E+02 0.0027 28.5 13.0 85 164-256 215-300 (365)
80 PRK09490 metH B12-dependent me 64.7 2.4E+02 0.0052 31.6 16.8 124 157-309 395-524 (1229)
81 COG4464 CapC Capsular polysacc 64.5 30 0.00065 30.6 6.9 118 69-193 14-132 (254)
82 cd01968 Nitrogenase_NifE_I Nit 64.3 1.4E+02 0.003 28.7 12.5 113 93-221 63-189 (410)
83 TIGR01428 HAD_type_II 2-haloal 64.2 21 0.00045 30.2 6.1 98 147-248 61-164 (198)
84 cd00308 enolase_like Enolase-s 64.1 30 0.00065 30.3 7.3 88 163-258 120-208 (229)
85 TIGR02534 mucon_cyclo muconate 64.1 1.3E+02 0.0029 28.4 13.9 86 163-256 213-299 (368)
86 cd04728 ThiG Thiazole synthase 63.4 1.1E+02 0.0025 27.4 14.6 106 140-252 71-181 (248)
87 PF00682 HMGL-like: HMGL-like 63.3 1E+02 0.0022 26.9 12.6 166 72-258 11-195 (237)
88 PLN02681 proline dehydrogenase 63.3 1.6E+02 0.0034 29.1 14.5 171 75-257 220-413 (455)
89 TIGR02668 moaA_archaeal probab 63.2 1.2E+02 0.0026 27.6 13.9 128 71-218 39-179 (302)
90 KOG1549 Cysteine desulfurase N 62.7 80 0.0017 30.8 10.1 13 238-250 203-215 (428)
91 cd03321 mandelate_racemase Man 62.6 1.3E+02 0.0029 28.3 11.8 153 74-253 142-295 (355)
92 cd00408 DHDPS-like Dihydrodipi 61.9 1.2E+02 0.0026 27.3 13.4 31 70-100 13-43 (281)
93 PRK13958 N-(5'-phosphoribosyl) 60.4 33 0.00071 29.9 6.7 65 155-226 17-83 (207)
94 PRK09875 putative hydrolase; P 60.0 1.4E+02 0.0031 27.5 13.6 54 188-247 119-177 (292)
95 cd03328 MR_like_3 Mandelate ra 59.8 1.6E+02 0.0034 27.8 13.0 153 73-253 138-293 (352)
96 PRK09856 fructoselysine 3-epim 59.8 57 0.0012 29.1 8.4 96 195-304 3-106 (275)
97 cd01974 Nitrogenase_MoFe_beta 59.2 52 0.0011 32.0 8.5 104 110-220 70-191 (435)
98 PF00682 HMGL-like: HMGL-like 58.8 73 0.0016 27.9 8.8 102 142-249 11-124 (237)
99 COG2069 CdhD CO dehydrogenase/ 58.6 1.2E+02 0.0026 28.1 10.0 97 152-258 157-263 (403)
100 CHL00076 chlB photochlorophyll 57.9 1.1E+02 0.0023 30.7 10.6 105 110-220 70-197 (513)
101 PRK00912 ribonuclease P protei 57.8 1.3E+02 0.0029 26.4 12.4 145 75-251 16-172 (237)
102 PRK14466 ribosomal RNA large s 57.0 1E+02 0.0022 29.2 9.8 92 165-258 210-326 (345)
103 COG1082 IolE Sugar phosphate i 56.1 1.1E+02 0.0025 26.9 9.8 109 182-304 20-142 (274)
104 COG1751 Uncharacterized conser 56.0 92 0.002 26.0 8.0 90 166-258 2-95 (186)
105 PRK09613 thiH thiamine biosynt 55.6 1.9E+02 0.004 28.7 11.7 141 142-308 115-273 (469)
106 PRK05692 hydroxymethylglutaryl 55.3 40 0.00086 31.0 6.6 105 142-252 23-139 (287)
107 COG4130 Predicted sugar epimer 54.9 65 0.0014 28.5 7.3 84 201-303 50-137 (272)
108 COG2022 ThiG Uncharacterized e 54.3 1.3E+02 0.0029 26.9 9.2 107 140-255 78-191 (262)
109 TIGR01502 B_methylAsp_ase meth 54.2 76 0.0017 30.8 8.6 86 164-255 265-357 (408)
110 PRK14460 ribosomal RNA large s 53.7 1.3E+02 0.0029 28.5 10.0 102 154-258 207-333 (354)
111 cd01966 Nitrogenase_NifN_1 Nit 52.7 95 0.0021 30.1 9.1 110 110-221 66-189 (417)
112 TIGR03679 arCOG00187 arCOG0018 52.5 1.6E+02 0.0035 25.7 12.0 131 149-305 46-177 (218)
113 cd02070 corrinoid_protein_B12- 52.5 1.3E+02 0.0028 25.9 9.1 21 73-93 9-29 (201)
114 cd00019 AP2Ec AP endonuclease 52.3 81 0.0018 28.3 8.2 51 237-304 89-139 (279)
115 PLN02591 tryptophan synthase 52.3 1.8E+02 0.0039 26.2 11.5 13 161-173 28-40 (250)
116 TIGR03821 AblA_like_1 lysine-2 52.2 2E+02 0.0044 26.8 11.6 96 163-259 143-246 (321)
117 PRK09997 hydroxypyruvate isome 52.0 1.7E+02 0.0037 25.9 10.2 52 237-304 89-140 (258)
118 PRK14455 ribosomal RNA large s 52.0 99 0.0022 29.4 8.9 91 166-258 223-338 (356)
119 cd00739 DHPS DHPS subgroup of 51.8 1.7E+02 0.0037 26.3 10.1 107 79-201 87-209 (257)
120 PRK14457 ribosomal RNA large s 51.7 2.2E+02 0.0047 27.0 11.2 96 161-258 211-331 (345)
121 PRK14464 ribosomal RNA large s 50.6 85 0.0019 29.7 8.1 83 174-258 223-318 (344)
122 cd07944 DRE_TIM_HOA_like 4-hyd 50.6 1.1E+02 0.0024 27.7 8.7 102 141-251 16-127 (266)
123 PLN02951 Molybderin biosynthes 50.6 2.3E+02 0.005 27.0 15.0 138 72-230 90-240 (373)
124 TIGR02082 metH 5-methyltetrahy 50.4 2E+02 0.0044 32.0 11.9 126 157-309 379-508 (1178)
125 PF01964 ThiC: ThiC family; I 50.0 1.3E+02 0.0027 29.2 9.0 134 75-250 76-219 (420)
126 TIGR01862 N2-ase-Ialpha nitrog 49.7 1.3E+02 0.0027 29.5 9.5 104 110-220 102-221 (443)
127 PRK11613 folP dihydropteroate 49.2 2.1E+02 0.0046 26.2 13.8 141 143-309 36-184 (282)
128 cd01967 Nitrogenase_MoFe_alpha 49.1 1.9E+02 0.0042 27.5 10.6 104 110-220 72-190 (406)
129 PRK00208 thiG thiazole synthas 49.1 2E+02 0.0044 25.9 14.7 106 140-252 71-181 (250)
130 cd01321 ADGF Adenosine deamina 49.0 2.3E+02 0.005 26.7 10.9 70 175-255 177-254 (345)
131 PRK15072 bifunctional D-altron 48.7 83 0.0018 30.3 8.0 84 163-254 232-316 (404)
132 TIGR01228 hutU urocanate hydra 48.7 51 0.0011 32.7 6.3 105 110-226 142-258 (545)
133 PF14871 GHL6: Hypothetical gl 48.5 30 0.00065 27.9 4.2 21 237-257 48-68 (132)
134 COG0820 Predicted Fe-S-cluster 48.5 1.6E+02 0.0034 28.0 9.4 90 166-258 216-331 (349)
135 cd04742 NPD_FabD 2-Nitropropan 48.3 69 0.0015 31.2 7.3 70 183-254 31-103 (418)
136 PRK01222 N-(5'-phosphoribosyl) 48.2 61 0.0013 28.3 6.4 65 156-227 20-86 (210)
137 PRK00730 rnpA ribonuclease P; 48.1 88 0.0019 25.5 6.8 61 126-189 47-110 (138)
138 PRK13352 thiamine biosynthesis 48.0 36 0.00079 32.9 5.2 102 178-305 122-223 (431)
139 PRK05414 urocanate hydratase; 47.9 55 0.0012 32.6 6.5 105 110-226 151-267 (556)
140 PF03279 Lip_A_acyltrans: Bact 47.7 1.7E+02 0.0037 26.5 9.6 66 78-163 110-175 (295)
141 PLN02363 phosphoribosylanthran 47.4 73 0.0016 28.8 6.9 81 132-226 48-130 (256)
142 cd01981 Pchlide_reductase_B Pc 47.4 2.2E+02 0.0048 27.5 10.8 104 110-221 70-197 (430)
143 PF07994 NAD_binding_5: Myo-in 47.1 1.3E+02 0.0028 27.8 8.6 95 144-251 131-230 (295)
144 PF13407 Peripla_BP_4: Peripla 47.1 76 0.0016 27.6 7.0 74 144-222 13-86 (257)
145 TIGR03849 arch_ComA phosphosul 46.9 1.2E+02 0.0025 27.3 7.9 99 149-251 12-118 (237)
146 PF00148 Oxidored_nitro: Nitro 46.9 65 0.0014 30.7 6.9 103 110-218 59-173 (398)
147 PRK05283 deoxyribose-phosphate 46.7 1.6E+02 0.0034 26.7 8.9 80 76-164 148-227 (257)
148 PF03599 CdhD: CO dehydrogenas 46.5 1.3E+02 0.0029 28.9 8.7 87 162-257 69-155 (386)
149 COG1140 NarY Nitrate reductase 46.5 7.8 0.00017 36.9 0.5 55 189-248 263-317 (513)
150 cd07943 DRE_TIM_HOA 4-hydroxy- 45.8 1.3E+02 0.0028 27.0 8.3 26 142-168 19-44 (263)
151 smart00812 Alpha_L_fucos Alpha 45.7 1.4E+02 0.0031 28.6 9.0 35 220-254 112-149 (384)
152 PLN02389 biotin synthase 45.5 2.8E+02 0.0061 26.6 13.0 128 69-214 113-253 (379)
153 PRK14462 ribosomal RNA large s 45.5 2.8E+02 0.006 26.4 16.2 90 167-258 225-339 (356)
154 TIGR03234 OH-pyruv-isom hydrox 45.5 2.1E+02 0.0046 25.1 9.7 52 237-304 88-139 (254)
155 PRK01313 rnpA ribonuclease P; 45.4 1.1E+02 0.0023 24.7 6.8 60 126-188 48-113 (129)
156 TIGR02026 BchE magnesium-proto 45.0 3.2E+02 0.007 27.1 11.9 46 142-190 222-268 (497)
157 TIGR00735 hisF imidazoleglycer 44.7 2.3E+02 0.005 25.2 11.6 87 155-249 164-253 (254)
158 cd00959 DeoC 2-deoxyribose-5-p 44.4 2E+02 0.0044 24.6 14.6 158 72-251 14-179 (203)
159 PRK14476 nitrogenase molybdenu 44.3 1.1E+02 0.0024 30.0 8.2 108 110-219 77-198 (455)
160 cd03317 NAAAR N-acylamino acid 44.2 2.7E+02 0.0059 26.0 13.8 151 75-257 139-290 (354)
161 cd01973 Nitrogenase_VFe_beta_l 44.2 2.8E+02 0.0062 27.2 11.0 111 110-221 71-193 (454)
162 TIGR00048 radical SAM enzyme, 44.0 1.8E+02 0.0038 27.7 9.2 92 165-258 218-334 (355)
163 TIGR01496 DHPS dihydropteroate 43.8 2.4E+02 0.0053 25.3 11.8 108 79-201 86-207 (257)
164 cd03174 DRE_TIM_metallolyase D 43.6 2.3E+02 0.005 24.9 14.7 25 72-96 16-40 (265)
165 TIGR01422 phosphonatase phosph 43.3 89 0.0019 27.5 6.9 37 176-213 101-137 (253)
166 PF01619 Pro_dh: Proline dehyd 43.3 45 0.00097 31.0 5.0 165 75-256 92-283 (313)
167 TIGR01212 radical SAM protein, 43.2 2.7E+02 0.0058 25.6 13.4 107 138-248 87-208 (302)
168 PRK13753 dihydropteroate synth 43.2 2.7E+02 0.0058 25.6 13.8 142 143-309 23-172 (279)
169 PLN00191 enolase 43.1 1.3E+02 0.0027 29.8 8.3 82 163-252 311-394 (457)
170 COG0422 ThiC Thiamine biosynth 43.1 3.2E+02 0.0068 26.4 12.5 90 141-259 137-226 (432)
171 PRK00499 rnpA ribonuclease P; 43.0 1.3E+02 0.0028 23.4 6.9 61 126-189 39-104 (114)
172 PRK06015 keto-hydroxyglutarate 42.7 85 0.0018 27.3 6.3 88 143-251 14-102 (201)
173 TIGR00683 nanA N-acetylneurami 42.7 2.7E+02 0.0058 25.4 13.4 26 70-95 16-42 (290)
174 COG1099 Predicted metal-depend 42.2 1.4E+02 0.0031 26.6 7.5 44 238-309 119-162 (254)
175 cd00950 DHDPS Dihydrodipicolin 42.0 2.6E+02 0.0057 25.2 12.3 28 70-97 16-43 (284)
176 TIGR01579 MiaB-like-C MiaB-lik 41.7 3.3E+02 0.0071 26.2 11.1 12 237-248 309-320 (414)
177 TIGR01290 nifB nitrogenase cof 41.5 3.5E+02 0.0076 26.5 12.5 109 142-258 60-199 (442)
178 PRK14465 ribosomal RNA large s 41.4 2.5E+02 0.0054 26.6 9.7 92 165-258 215-330 (342)
179 TIGR01182 eda Entner-Doudoroff 41.2 1.1E+02 0.0024 26.7 6.8 88 143-251 18-106 (204)
180 CHL00162 thiG thiamin biosynth 41.2 1.7E+02 0.0037 26.6 8.0 106 140-252 79-195 (267)
181 COG0135 TrpF Phosphoribosylant 41.1 1.7E+02 0.0036 25.7 7.9 81 156-250 19-102 (208)
182 PRK13478 phosphonoacetaldehyde 40.8 1.1E+02 0.0023 27.4 7.0 36 176-212 103-138 (267)
183 PLN02746 hydroxymethylglutaryl 40.7 1.3E+02 0.0029 28.5 7.8 97 147-252 69-181 (347)
184 PF01081 Aldolase: KDPG and KH 40.5 96 0.0021 26.9 6.3 60 179-251 46-106 (196)
185 COG0279 GmhA Phosphoheptose is 40.5 2.3E+02 0.005 24.1 9.0 122 75-209 28-154 (176)
186 PRK03459 rnpA ribonuclease P; 40.3 1.3E+02 0.0028 23.9 6.6 61 126-189 49-114 (122)
187 PRK00077 eno enolase; Provisio 40.3 1.5E+02 0.0031 29.0 8.2 99 143-254 262-365 (425)
188 PF02638 DUF187: Glycosyl hydr 40.2 1.5E+02 0.0032 27.5 8.0 19 237-255 74-92 (311)
189 COG2987 HutU Urocanate hydrata 39.7 73 0.0016 31.3 5.8 106 110-227 151-268 (561)
190 PF07287 DUF1446: Protein of u 39.7 82 0.0018 30.1 6.2 16 237-252 62-77 (362)
191 PF00809 Pterin_bind: Pterin b 39.6 2.5E+02 0.0054 24.3 10.7 87 157-255 30-125 (210)
192 PRK14477 bifunctional nitrogen 39.1 1.7E+02 0.0037 31.6 9.1 110 110-221 556-676 (917)
193 PRK09989 hypothetical protein; 38.6 2.8E+02 0.006 24.5 9.6 52 237-304 89-140 (258)
194 PRK05301 pyrroloquinoline quin 38.6 3.4E+02 0.0075 25.6 14.7 129 70-218 44-184 (378)
195 CHL00200 trpA tryptophan synth 38.5 3E+02 0.0066 24.9 12.0 28 221-249 95-122 (263)
196 TIGR01284 alt_nitrog_alph nitr 38.4 3.9E+02 0.0086 26.2 11.9 105 110-220 109-229 (457)
197 PRK13210 putative L-xylulose 5 38.3 2.6E+02 0.0057 24.8 9.2 14 237-250 137-150 (284)
198 smart00633 Glyco_10 Glycosyl h 38.2 1.6E+02 0.0036 26.1 7.8 109 144-255 102-227 (254)
199 PF01175 Urocanase: Urocanase; 38.2 99 0.0022 30.8 6.5 91 126-227 156-258 (546)
200 PLN02591 tryptophan synthase 38.1 3E+02 0.0065 24.7 13.7 127 73-211 14-153 (250)
201 COG2896 MoaA Molybdenum cofact 38.1 3.5E+02 0.0075 25.4 11.3 122 72-220 43-184 (322)
202 PRK05406 LamB/YcsF family prot 37.8 1.3E+02 0.0027 27.2 6.7 74 52-158 13-95 (246)
203 TIGR01060 eno phosphopyruvate 37.8 1.8E+02 0.0038 28.4 8.4 84 163-254 278-366 (425)
204 cd04740 DHOD_1B_like Dihydroor 37.5 3.2E+02 0.0069 24.8 12.4 159 73-247 100-286 (296)
205 PF12816 Vps8: Golgi CORVET co 37.5 28 0.00061 30.1 2.6 64 179-247 4-67 (196)
206 TIGR01927 menC_gamma/gm+ o-suc 37.4 1.5E+02 0.0033 27.3 7.6 87 163-259 183-270 (307)
207 PRK01060 endonuclease IV; Prov 37.3 2.5E+02 0.0053 25.1 8.9 18 153-171 19-36 (281)
208 PRK09284 thiamine biosynthesis 37.3 3.2E+02 0.0069 27.7 9.8 118 141-302 291-410 (607)
209 PF10668 Phage_terminase: Phag 37.3 17 0.00037 25.2 0.9 16 292-307 24-39 (60)
210 PRK14478 nitrogenase molybdenu 37.3 3.6E+02 0.0078 26.6 10.6 104 110-220 104-221 (475)
211 TIGR00126 deoC deoxyribose-pho 37.2 2.8E+02 0.0062 24.2 14.9 143 71-234 14-163 (211)
212 COG2355 Zn-dependent dipeptida 37.2 1.7E+02 0.0038 27.3 7.8 31 167-198 98-128 (313)
213 CHL00200 trpA tryptophan synth 36.7 3.2E+02 0.007 24.7 13.0 127 73-211 27-166 (263)
214 PRK14456 ribosomal RNA large s 36.6 2.4E+02 0.0052 27.0 8.9 92 165-258 237-354 (368)
215 PRK12569 hypothetical protein; 36.5 1.4E+02 0.0031 26.8 6.8 76 52-158 14-98 (245)
216 PRK09545 znuA high-affinity zi 36.5 2.9E+02 0.0064 25.5 9.4 51 201-258 237-287 (311)
217 cd01948 EAL EAL domain. This d 36.3 2.6E+02 0.0057 23.7 8.7 113 128-251 83-207 (240)
218 COG1560 HtrB Lauroyl/myristoyl 36.2 3.5E+02 0.0075 25.2 9.7 134 76-256 110-244 (308)
219 PF02679 ComA: (2R)-phospho-3- 36.2 1.5E+02 0.0033 26.6 7.0 101 148-251 24-131 (244)
220 PRK08195 4-hyroxy-2-oxovalerat 36.0 3.2E+02 0.007 25.6 9.6 103 140-252 20-134 (337)
221 TIGR03700 mena_SCO4494 putativ 35.9 3.8E+02 0.0081 25.2 10.9 47 142-190 79-125 (351)
222 COG2062 SixA Phosphohistidine 35.8 2.6E+02 0.0057 23.5 8.0 79 111-204 35-113 (163)
223 PRK12268 methionyl-tRNA synthe 35.7 1.8E+02 0.004 29.1 8.5 47 145-193 73-119 (556)
224 PRK05985 cytosine deaminase; P 35.4 3.9E+02 0.0084 25.2 13.0 168 75-258 98-277 (391)
225 TIGR01285 nifN nitrogenase mol 35.4 1.7E+02 0.0037 28.5 7.9 109 110-220 76-198 (432)
226 PF13378 MR_MLE_C: Enolase C-t 35.4 24 0.00052 27.0 1.6 52 198-254 3-54 (111)
227 PRK01060 endonuclease IV; Prov 35.2 2.8E+02 0.0061 24.7 8.9 60 194-255 3-72 (281)
228 TIGR00126 deoC deoxyribose-pho 35.2 3.1E+02 0.0067 24.0 8.8 75 73-162 130-205 (211)
229 PF01402 RHH_1: Ribbon-helix-h 35.2 28 0.00061 21.2 1.6 20 289-308 10-29 (39)
230 COG2185 Sbm Methylmalonyl-CoA 35.2 2.5E+02 0.0055 23.0 12.9 107 76-209 27-134 (143)
231 PRK12928 lipoyl synthase; Prov 35.1 2.1E+02 0.0046 26.3 8.1 165 72-255 87-280 (290)
232 COG2185 Sbm Methylmalonyl-CoA 35.1 1.5E+02 0.0032 24.4 6.2 59 192-260 17-77 (143)
233 PRK07027 cobalamin biosynthesi 35.1 75 0.0016 25.3 4.5 61 194-255 5-69 (126)
234 PRK14468 ribosomal RNA large s 35.0 3.8E+02 0.0083 25.2 10.0 93 165-259 206-323 (343)
235 TIGR01210 conserved hypothetic 35.0 2.5E+02 0.0055 26.0 8.7 26 181-206 118-145 (313)
236 cd02801 DUS_like_FMN Dihydrour 34.9 3E+02 0.0064 23.7 10.3 124 73-209 65-202 (231)
237 cd00405 PRAI Phosphoribosylant 34.2 2.9E+02 0.0064 23.5 10.8 41 162-205 73-113 (203)
238 PF01297 TroA: Periplasmic sol 34.2 3.3E+02 0.0071 24.0 9.7 80 163-257 151-233 (256)
239 KOG4175 Tryptophan synthase al 34.1 3.3E+02 0.0071 24.0 10.1 126 145-304 3-151 (268)
240 PRK03031 rnpA ribonuclease P; 33.8 1.9E+02 0.004 22.8 6.6 62 126-189 48-114 (122)
241 TIGR00188 rnpA ribonuclease P 33.7 2.1E+02 0.0045 21.8 6.7 59 126-187 42-104 (105)
242 TIGR00398 metG methionyl-tRNA 33.7 2.5E+02 0.0053 28.0 8.9 47 145-193 68-114 (530)
243 PRK01492 rnpA ribonuclease P; 33.6 2.3E+02 0.005 22.2 7.0 60 126-187 47-114 (118)
244 PRK14467 ribosomal RNA large s 33.5 4.2E+02 0.0091 25.1 10.0 98 162-259 208-331 (348)
245 PF01904 DUF72: Protein of unk 33.5 2.9E+02 0.0063 24.3 8.5 94 81-188 12-112 (230)
246 cd03770 SR_TndX_transposase Se 33.5 81 0.0018 25.3 4.6 42 148-189 54-97 (140)
247 smart00052 EAL Putative diguan 33.3 2.8E+02 0.0061 23.6 8.4 98 145-251 99-208 (241)
248 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.2 1.9E+02 0.0041 26.2 7.4 15 152-166 27-41 (275)
249 cd01976 Nitrogenase_MoFe_alpha 33.0 4.6E+02 0.01 25.4 13.5 104 110-220 83-202 (421)
250 PRK04390 rnpA ribonuclease P; 32.9 2.1E+02 0.0046 22.5 6.7 62 126-189 45-110 (120)
251 PRK11840 bifunctional sulfur c 32.9 4.2E+02 0.0092 24.9 13.6 71 140-211 145-217 (326)
252 COG0502 BioB Biotin synthase a 32.8 4.3E+02 0.0093 25.0 10.3 136 71-232 83-234 (335)
253 COG0218 Predicted GTPase [Gene 32.7 3.4E+02 0.0073 23.7 9.6 100 74-189 90-198 (200)
254 TIGR02026 BchE magnesium-proto 32.4 2.6E+02 0.0056 27.8 8.8 75 175-252 223-303 (497)
255 PRK07535 methyltetrahydrofolat 32.4 3.8E+02 0.0082 24.2 9.7 59 176-258 173-233 (261)
256 PRK04820 rnpA ribonuclease P; 32.1 2.6E+02 0.0057 22.9 7.3 62 126-189 49-114 (145)
257 PF15221 LEP503: Lens epitheli 32.1 30 0.00065 23.4 1.4 23 34-56 13-35 (61)
258 cd03314 MAL Methylaspartate am 32.0 3.1E+02 0.0067 26.2 8.9 85 165-254 229-320 (369)
259 cd00338 Ser_Recombinase Serine 32.0 96 0.0021 24.2 4.7 43 148-190 51-95 (137)
260 cd00954 NAL N-Acetylneuraminic 32.0 2.4E+02 0.0053 25.6 8.0 112 141-258 17-141 (288)
261 PRK10550 tRNA-dihydrouridine s 31.9 4.2E+02 0.0091 24.6 13.3 128 74-210 74-214 (312)
262 TIGR00262 trpA tryptophan synt 31.9 3.8E+02 0.0082 24.1 12.0 28 142-173 21-48 (256)
263 PF01890 CbiG_C: Cobalamin syn 31.7 1.2E+02 0.0027 23.8 5.2 55 201-256 13-68 (121)
264 PRK13803 bifunctional phosphor 31.7 2.7E+02 0.006 28.5 9.0 67 156-227 20-88 (610)
265 COG1801 Uncharacterized conser 31.7 3.9E+02 0.0086 24.2 11.2 77 84-173 32-114 (263)
266 TIGR01283 nifE nitrogenase mol 31.7 4.2E+02 0.0092 25.9 10.1 104 110-220 106-227 (456)
267 COG2179 Predicted hydrolase of 31.6 2.7E+02 0.0059 23.6 7.3 85 154-249 22-110 (175)
268 PF11020 DUF2610: Domain of un 31.5 41 0.0009 24.6 2.1 25 284-308 48-72 (82)
269 PRK00507 deoxyribose-phosphate 31.4 2.6E+02 0.0057 24.6 7.7 27 73-99 134-160 (221)
270 PRK11865 pyruvate ferredoxin o 31.4 4.1E+02 0.0089 24.6 9.3 116 78-213 165-289 (299)
271 PF04748 Polysacc_deac_2: Dive 31.2 3.6E+02 0.0078 23.5 9.0 52 72-135 71-127 (213)
272 PF14606 Lipase_GDSL_3: GDSL-l 31.0 2.7E+02 0.0059 23.7 7.4 92 83-190 28-135 (178)
273 cd00952 CHBPH_aldolase Trans-o 30.8 4.3E+02 0.0093 24.3 12.7 30 70-99 24-53 (309)
274 TIGR03821 AblA_like_1 lysine-2 30.7 4.4E+02 0.0096 24.5 13.6 133 73-217 126-265 (321)
275 PRK06245 cofG FO synthase subu 30.7 4.4E+02 0.0095 24.4 9.9 15 237-251 157-171 (336)
276 cd02069 methionine_synthase_B1 30.6 2.2E+02 0.0048 24.8 7.1 23 72-94 12-34 (213)
277 PRK08419 lipid A biosynthesis 30.5 4.1E+02 0.009 24.1 14.5 18 237-254 214-231 (298)
278 PRK07003 DNA polymerase III su 30.5 1.9E+02 0.0042 30.7 7.5 66 142-208 99-166 (830)
279 PRK02901 O-succinylbenzoate sy 30.4 3.1E+02 0.0067 25.7 8.5 97 149-259 148-245 (327)
280 PLN02444 HMP-P synthase 30.4 3.2E+02 0.007 27.7 8.7 59 225-302 355-415 (642)
281 TIGR00190 thiC thiamine biosyn 30.2 51 0.0011 31.8 3.1 16 290-305 205-220 (423)
282 TIGR02932 vnfK_nitrog V-contai 29.9 4.2E+02 0.0092 26.0 9.7 111 110-221 74-197 (457)
283 PRK14470 ribosomal RNA large s 29.9 4.4E+02 0.0095 24.8 9.4 91 166-258 208-323 (336)
284 PRK15440 L-rhamnonate dehydrat 29.7 89 0.0019 30.1 4.8 69 179-252 247-318 (394)
285 TIGR03217 4OH_2_O_val_ald 4-hy 29.5 3.4E+02 0.0074 25.5 8.6 105 140-252 19-133 (333)
286 PRK05826 pyruvate kinase; Prov 29.5 5.7E+02 0.012 25.3 11.1 90 78-192 176-274 (465)
287 PF10100 DUF2338: Uncharacteri 29.5 3.1E+02 0.0066 26.7 8.2 134 151-305 127-274 (429)
288 PF04914 DltD_C: DltD C-termin 29.5 62 0.0014 26.1 3.2 51 238-305 41-93 (130)
289 KOG0922 DEAH-box RNA helicase 29.4 59 0.0013 33.4 3.6 38 154-193 414-451 (674)
290 PRK03892 ribonuclease P protei 29.4 4E+02 0.0086 23.5 12.2 139 127-303 28-168 (216)
291 PRK10658 putative alpha-glucos 29.3 2.5E+02 0.0053 29.2 8.2 89 161-252 234-344 (665)
292 cd00019 AP2Ec AP endonuclease 29.2 4.1E+02 0.0088 23.7 8.9 51 237-303 49-100 (279)
293 PRK15108 biotin synthase; Prov 29.2 4.9E+02 0.011 24.5 10.1 113 142-258 76-196 (345)
294 COG1167 ARO8 Transcriptional r 29.2 4.8E+02 0.01 25.5 10.0 96 149-255 166-269 (459)
295 PRK09061 D-glutamate deacylase 29.2 5.8E+02 0.013 25.4 12.3 116 75-201 169-286 (509)
296 PTZ00081 enolase; Provisional 29.1 3.4E+02 0.0074 26.6 8.8 97 142-251 281-381 (439)
297 smart00857 Resolvase Resolvase 29.0 1.6E+02 0.0035 23.3 5.7 41 150-190 53-95 (148)
298 cd01017 AdcA Metal binding pro 29.0 3.5E+02 0.0076 24.4 8.5 52 200-258 204-255 (282)
299 TIGR00674 dapA dihydrodipicoli 28.8 4.4E+02 0.0095 23.8 12.7 25 70-94 14-38 (285)
300 cd03320 OSBS o-Succinylbenzoat 28.7 4.2E+02 0.0091 23.6 11.5 87 163-258 153-239 (263)
301 PRK00396 rnpA ribonuclease P; 28.7 2.4E+02 0.0053 22.6 6.5 60 126-188 47-111 (130)
302 PRK07534 methionine synthase I 28.6 5E+02 0.011 24.4 16.2 176 74-253 44-239 (336)
303 cd03313 enolase Enolase: Enola 28.5 3.8E+02 0.0083 25.9 9.0 81 163-251 277-361 (408)
304 COG3653 N-acyl-D-aspartate/D-g 28.5 5.9E+02 0.013 25.2 11.2 138 75-247 182-330 (579)
305 PRK11194 ribosomal RNA large s 28.5 5.3E+02 0.012 24.7 10.0 90 167-258 221-338 (372)
306 PRK10826 2-deoxyglucose-6-phos 28.5 1.4E+02 0.0031 25.6 5.6 36 175-211 93-128 (222)
307 TIGR00423 radical SAM domain p 28.4 4.7E+02 0.01 24.0 10.7 21 237-257 149-169 (309)
308 PRK12331 oxaloacetate decarbox 28.4 3.3E+02 0.0072 26.8 8.6 95 148-251 28-141 (448)
309 TIGR02109 PQQ_syn_pqqE coenzym 28.4 4.9E+02 0.011 24.2 13.7 128 71-218 36-175 (358)
310 PRK06552 keto-hydroxyglutarate 28.4 1.9E+02 0.0041 25.3 6.3 88 143-251 23-114 (213)
311 PRK00507 deoxyribose-phosphate 28.2 4.1E+02 0.009 23.3 14.5 136 71-227 18-160 (221)
312 PRK12323 DNA polymerase III su 28.1 2E+02 0.0044 29.9 7.2 71 142-213 104-176 (700)
313 COG1387 HIS2 Histidinol phosph 27.8 4.3E+02 0.0093 23.4 10.2 153 78-250 19-190 (237)
314 cd06300 PBP1_ABC_sugar_binding 27.7 4E+02 0.0087 23.0 10.0 52 145-200 15-69 (272)
315 TIGR03699 mena_SCO4550 menaqui 27.7 5E+02 0.011 24.1 12.6 128 72-216 72-223 (340)
316 cd00954 NAL N-Acetylneuraminic 27.7 4.6E+02 0.01 23.7 13.5 26 70-95 16-42 (288)
317 PRK13111 trpA tryptophan synth 27.5 4.6E+02 0.01 23.6 12.2 91 143-247 24-118 (258)
318 TIGR00091 tRNA (guanine-N(7)-) 27.5 3.8E+02 0.0082 22.6 8.1 53 161-215 86-148 (194)
319 PRK12558 glutamyl-tRNA synthet 27.4 2.2E+02 0.0047 28.1 7.0 64 142-212 48-111 (445)
320 KOG0053 Cystathionine beta-lya 27.4 1.6E+02 0.0035 28.6 6.0 58 202-260 149-206 (409)
321 PTZ00413 lipoate synthase; Pro 27.3 5.8E+02 0.013 24.7 11.6 171 70-257 175-373 (398)
322 PLN02775 Probable dihydrodipic 27.1 3.8E+02 0.0082 24.7 8.2 56 151-209 68-123 (286)
323 TIGR00640 acid_CoA_mut_C methy 27.1 3.3E+02 0.0071 21.8 12.8 107 75-209 16-124 (132)
324 PRK04165 acetyl-CoA decarbonyl 27.0 6.2E+02 0.013 25.0 10.6 102 142-254 102-209 (450)
325 COG1121 ZnuC ABC-type Mn/Zn tr 26.8 2.4E+02 0.0052 25.5 6.7 46 161-208 156-205 (254)
326 TIGR03550 F420_cofG 7,8-dideme 26.8 5.1E+02 0.011 23.9 10.2 19 237-255 153-171 (322)
327 PRK09427 bifunctional indole-3 26.7 2.2E+02 0.0048 28.0 7.0 64 155-227 273-338 (454)
328 PRK06424 transcription factor; 26.7 1.8E+02 0.004 23.8 5.5 20 237-256 24-46 (144)
329 KOG1321 Protoheme ferro-lyase 26.7 1.2E+02 0.0025 28.6 4.7 63 179-244 142-211 (395)
330 PRK10508 hypothetical protein; 26.6 91 0.002 29.3 4.2 43 142-188 286-328 (333)
331 PRK08776 cystathionine gamma-s 26.5 5.8E+02 0.013 24.5 10.4 17 238-254 167-183 (405)
332 COG2159 Predicted metal-depend 26.4 3.1E+02 0.0067 25.2 7.6 98 155-256 55-167 (293)
333 PRK12267 methionyl-tRNA synthe 26.3 3.8E+02 0.0083 27.6 9.0 49 145-195 73-121 (648)
334 PRK05354 arginine decarboxylas 26.3 7.4E+02 0.016 25.6 17.5 64 242-310 277-340 (634)
335 COG0329 DapA Dihydrodipicolina 26.3 5.2E+02 0.011 23.8 11.7 113 142-258 22-143 (299)
336 PRK09485 mmuM homocysteine met 26.2 5.2E+02 0.011 23.8 15.6 172 73-252 44-246 (304)
337 PF13380 CoA_binding_2: CoA bi 26.2 1.4E+02 0.0031 23.2 4.6 15 237-251 93-107 (116)
338 PRK10415 tRNA-dihydrouridine s 26.0 5.4E+02 0.012 23.9 12.5 126 74-211 76-215 (321)
339 PRK03170 dihydrodipicolinate s 25.9 5E+02 0.011 23.5 13.0 25 70-94 17-41 (292)
340 PF00290 Trp_syntA: Tryptophan 25.9 1.9E+02 0.0041 26.2 5.9 72 177-254 72-148 (259)
341 TIGR01282 nifD nitrogenase mol 25.9 4.2E+02 0.0092 26.1 8.9 104 110-220 116-237 (466)
342 cd01971 Nitrogenase_VnfN_like 25.9 4.2E+02 0.0091 25.6 8.8 106 110-222 71-192 (427)
343 PRK13111 trpA tryptophan synth 25.8 4.9E+02 0.011 23.4 13.4 127 74-211 25-164 (258)
344 PRK05660 HemN family oxidoredu 25.8 5.8E+02 0.013 24.2 12.7 38 176-213 142-184 (378)
345 cd00408 DHDPS-like Dihydrodipi 25.8 4.8E+02 0.01 23.3 9.2 107 141-254 14-131 (281)
346 PRK01732 rnpA ribonuclease P; 25.5 3.3E+02 0.0071 21.2 6.7 60 126-188 46-110 (114)
347 COG3693 XynA Beta-1,4-xylanase 25.4 5.8E+02 0.013 24.1 9.4 87 142-231 168-265 (345)
348 PF02796 HTH_7: Helix-turn-hel 25.4 81 0.0018 20.0 2.6 16 292-307 23-38 (45)
349 TIGR01163 rpe ribulose-phospha 25.4 4.1E+02 0.0089 22.3 8.7 99 142-249 8-107 (210)
350 COG0497 RecN ATPase involved i 25.2 65 0.0014 32.5 3.0 30 278-307 294-323 (557)
351 COG0626 MetC Cystathionine bet 25.1 3.1E+02 0.0067 26.6 7.5 45 217-261 150-194 (396)
352 COG0635 HemN Coproporphyrinoge 25.0 6.4E+02 0.014 24.4 10.3 60 141-202 200-276 (416)
353 TIGR03471 HpnJ hopanoid biosyn 25.0 6.6E+02 0.014 24.6 11.2 69 175-248 321-393 (472)
354 PF09989 DUF2229: CoA enzyme a 24.9 4.7E+02 0.01 22.9 10.5 35 217-252 184-218 (221)
355 cd07943 DRE_TIM_HOA 4-hydroxy- 24.7 5E+02 0.011 23.1 16.6 23 73-95 20-42 (263)
356 PRK02910 light-independent pro 24.6 6.3E+02 0.014 25.3 10.0 104 110-221 70-193 (519)
357 TIGR01859 fruc_bis_ald_ fructo 24.5 4.2E+02 0.0092 24.2 8.1 118 181-304 6-131 (282)
358 PLN02428 lipoic acid synthase 24.5 6.2E+02 0.013 24.1 14.4 164 73-257 131-325 (349)
359 COG3454 Metal-dependent hydrol 24.4 1E+02 0.0022 29.1 3.9 15 237-251 214-228 (377)
360 COG4152 ABC-type uncharacteriz 24.4 5.6E+02 0.012 23.5 8.6 69 141-211 101-199 (300)
361 PF01118 Semialdhyde_dh: Semia 24.3 89 0.0019 24.3 3.2 26 74-99 76-101 (121)
362 PRK07764 DNA polymerase III su 24.3 3E+02 0.0065 29.4 7.9 97 143-249 101-199 (824)
363 PRK12581 oxaloacetate decarbox 24.2 7.1E+02 0.015 24.7 15.5 157 73-248 103-264 (468)
364 PRK06361 hypothetical protein; 24.1 4.5E+02 0.0098 22.4 16.3 183 76-307 11-196 (212)
365 PRK13505 formate--tetrahydrofo 24.1 1.2E+02 0.0027 30.5 4.7 55 203-258 359-413 (557)
366 PRK00133 metG methionyl-tRNA s 24.1 3.9E+02 0.0085 27.7 8.6 97 91-194 5-118 (673)
367 PF10566 Glyco_hydro_97: Glyco 24.0 2E+02 0.0043 26.3 5.7 58 200-257 29-97 (273)
368 PRK09997 hydroxypyruvate isome 24.0 4.2E+02 0.009 23.3 7.9 73 218-304 28-101 (258)
369 cd06604 GH31_glucosidase_II_Ma 23.9 1.5E+02 0.0033 27.7 5.2 16 237-252 68-83 (339)
370 PF13289 SIR2_2: SIR2-like dom 23.7 2.2E+02 0.0048 22.2 5.5 68 177-250 74-143 (143)
371 PLN02623 pyruvate kinase 23.6 8.1E+02 0.017 25.1 11.4 95 72-191 276-377 (581)
372 PRK00912 ribonuclease P protei 23.5 5E+02 0.011 22.7 9.4 63 191-258 81-144 (237)
373 PF06415 iPGM_N: BPG-independe 23.4 3.2E+02 0.0069 24.2 6.7 76 176-251 13-99 (223)
374 cd01821 Rhamnogalacturan_acety 23.3 4.4E+02 0.0094 21.9 8.5 99 191-305 36-150 (198)
375 COG1751 Uncharacterized conser 23.2 2.9E+02 0.0063 23.1 5.9 76 71-161 10-85 (186)
376 PRK14469 ribosomal RNA large s 23.2 6.3E+02 0.014 23.7 10.7 90 166-257 212-325 (343)
377 PF01301 Glyco_hydro_35: Glyco 23.0 3E+02 0.0065 25.6 6.9 62 237-300 67-133 (319)
378 cd00452 KDPG_aldolase KDPG and 23.0 4.6E+02 0.01 22.1 13.8 110 73-224 14-123 (190)
379 TIGR00539 hemN_rel putative ox 22.9 6.3E+02 0.014 23.6 12.7 64 151-214 102-178 (360)
380 COG0282 ackA Acetate kinase [E 22.9 2.4E+02 0.0051 27.2 6.1 71 184-264 164-239 (396)
381 PTZ00300 pyruvate kinase; Prov 22.7 7.5E+02 0.016 24.4 11.0 90 78-193 150-248 (454)
382 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.6 5.7E+02 0.012 23.0 15.8 24 73-96 19-42 (275)
383 cd06594 GH31_glucosidase_YihQ 22.6 1.8E+02 0.0039 27.0 5.4 52 201-252 21-90 (317)
384 PRK00454 engB GTP-binding prot 22.5 4.4E+02 0.0094 21.6 9.9 28 163-190 169-196 (196)
385 PRK05628 coproporphyrinogen II 22.5 6.6E+02 0.014 23.7 11.2 114 78-201 108-247 (375)
386 TIGR02080 O_succ_thio_ly O-suc 22.3 6.7E+02 0.015 23.7 10.2 14 238-251 158-171 (382)
387 PRK06806 fructose-bisphosphate 22.3 5.8E+02 0.013 23.3 8.5 118 181-304 8-131 (281)
388 cd03527 RuBisCO_small Ribulose 22.3 3.6E+02 0.0079 20.6 9.3 74 70-169 10-84 (99)
389 PRK08208 coproporphyrinogen II 22.3 7.2E+02 0.016 24.0 12.2 66 150-215 142-220 (430)
390 PRK04527 argininosuccinate syn 22.2 5.9E+02 0.013 24.7 8.8 74 75-172 42-118 (400)
391 PRK08599 coproporphyrinogen II 21.9 6.7E+02 0.015 23.6 12.2 38 176-213 135-177 (377)
392 TIGR00238 KamA family protein. 21.9 6.6E+02 0.014 23.4 12.1 112 148-260 144-264 (331)
393 PRK08445 hypothetical protein; 21.9 6.7E+02 0.015 23.6 9.6 22 237-258 186-207 (348)
394 TIGR01501 MthylAspMutase methy 21.8 4.3E+02 0.0094 21.3 14.5 112 75-208 15-127 (134)
395 TIGR03586 PseI pseudaminic aci 21.8 6.7E+02 0.015 23.5 12.7 135 72-228 74-225 (327)
396 PF08013 Tagatose_6_P_K: Tagat 21.8 93 0.002 30.2 3.2 51 45-97 79-131 (424)
397 COG2874 FlaH Predicted ATPases 21.7 5.8E+02 0.013 22.7 8.6 134 38-200 18-168 (235)
398 PRK05283 deoxyribose-phosphate 21.7 5.1E+02 0.011 23.5 7.8 144 71-230 22-174 (257)
399 PRK07360 FO synthase subunit 2 21.7 6.9E+02 0.015 23.6 10.4 22 237-258 205-226 (371)
400 TIGR01093 aroD 3-dehydroquinat 21.7 5.4E+02 0.012 22.4 10.9 102 142-253 75-186 (228)
401 cd03768 SR_ResInv Serine Recom 21.6 1.9E+02 0.0042 22.2 4.7 40 149-190 43-84 (126)
402 TIGR02931 anfK_nitrog Fe-only 21.6 7.8E+02 0.017 24.2 10.4 107 110-220 77-199 (461)
403 KOG0059 Lipid exporter ABCA1 a 21.6 4.1E+02 0.0088 28.6 8.4 69 141-211 669-767 (885)
404 COG2055 Malate/L-lactate dehyd 21.5 6.7E+02 0.015 23.8 8.8 102 141-259 5-122 (349)
405 KOG0259 Tyrosine aminotransfer 21.5 7.6E+02 0.016 24.0 13.8 165 74-261 80-275 (447)
406 PF14085 DUF4265: Domain of un 21.4 2.3E+02 0.005 22.2 5.0 93 88-193 12-116 (117)
407 PF13419 HAD_2: Haloacid dehal 21.3 2.8E+02 0.0061 21.9 5.8 71 175-247 78-148 (176)
408 PF05049 IIGP: Interferon-indu 21.2 1.5E+02 0.0033 28.4 4.6 61 109-173 129-201 (376)
409 TIGR00433 bioB biotin syntheta 21.2 6E+02 0.013 22.8 11.9 125 73-216 63-200 (296)
410 cd08556 GDPD Glycerophosphodie 21.2 4.6E+02 0.0099 21.4 9.0 21 74-94 12-32 (189)
411 TIGR02666 moaA molybdenum cofa 21.2 4.4E+02 0.0095 24.3 7.7 75 182-258 104-196 (334)
412 PRK11059 regulatory protein Cs 21.2 3.3E+02 0.0072 27.8 7.4 69 176-252 532-609 (640)
413 TIGR01286 nifK nitrogenase mol 21.2 5.3E+02 0.011 25.9 8.6 108 110-221 127-252 (515)
414 PRK00588 rnpA ribonuclease P; 21.1 3.7E+02 0.008 21.1 6.1 61 125-188 43-108 (118)
415 COG4077 Uncharacterized protei 21.1 2E+02 0.0043 23.4 4.4 81 127-211 34-114 (156)
416 TIGR00238 KamA family protein. 21.0 6.8E+02 0.015 23.3 12.9 106 74-191 144-251 (331)
417 cd06311 PBP1_ABC_sugar_binding 21.0 5.5E+02 0.012 22.2 10.0 74 144-220 14-89 (274)
418 PRK08207 coproporphyrinogen II 20.9 8.3E+02 0.018 24.3 12.8 115 137-255 227-358 (488)
419 COG4555 NatA ABC-type Na+ tran 20.9 4.7E+02 0.01 23.3 7.1 67 141-209 104-200 (245)
420 KOG0996 Structural maintenance 20.8 53 0.0012 35.8 1.5 77 176-258 599-677 (1293)
421 PF07027 DUF1318: Protein of u 20.8 76 0.0016 24.1 2.0 25 284-308 44-68 (95)
422 PF13602 ADH_zinc_N_2: Zinc-bi 20.7 1.1E+02 0.0023 23.5 3.0 41 176-216 80-120 (127)
423 PF08734 GYD: GYD domain; Int 20.7 3.6E+02 0.0078 20.0 6.9 65 145-209 19-90 (91)
424 COG3215 PilZ Tfp pilus assembl 20.7 1.2E+02 0.0025 23.6 2.9 52 73-136 18-69 (117)
425 cd06602 GH31_MGAM_SI_GAA This 20.7 2.2E+02 0.0047 26.8 5.5 53 201-253 22-86 (339)
426 cd06591 GH31_xylosidase_XylS X 20.6 2.1E+02 0.0045 26.5 5.4 55 201-255 22-89 (319)
427 TIGR01549 HAD-SF-IA-v1 haloaci 20.5 3.5E+02 0.0077 21.3 6.2 68 177-248 67-134 (154)
428 cd06598 GH31_transferase_CtsZ 20.5 2E+02 0.0043 26.6 5.2 53 201-253 22-90 (317)
429 PRK11559 garR tartronate semia 20.5 2.7E+02 0.006 25.1 6.1 22 286-307 182-203 (296)
430 PRK14847 hypothetical protein; 20.3 5.8E+02 0.013 24.1 8.2 105 148-257 56-181 (333)
431 PRK05660 HemN family oxidoredu 20.3 5.7E+02 0.012 24.3 8.4 60 141-202 170-243 (378)
432 cd06595 GH31_xylosidase_XylS-l 20.3 2.4E+02 0.0053 25.7 5.7 54 200-253 22-94 (292)
433 cd03326 MR_like_1 Mandelate ra 20.2 7.6E+02 0.017 23.6 13.4 152 74-248 161-313 (385)
434 COG1908 FrhD Coenzyme F420-red 20.2 4.6E+02 0.01 21.0 6.7 69 110-183 43-117 (132)
435 COG3033 TnaA Tryptophanase [Am 20.2 2E+02 0.0043 27.7 4.9 52 199-250 168-223 (471)
436 TIGR00035 asp_race aspartate r 20.2 5E+02 0.011 22.6 7.5 62 143-205 15-89 (229)
437 COG0289 DapB Dihydrodipicolina 20.2 2.9E+02 0.0062 25.2 5.8 54 172-228 75-128 (266)
438 PRK00377 cbiT cobalt-precorrin 20.1 5E+02 0.011 21.8 7.3 63 161-227 110-173 (198)
439 PRK04930 glutathione-regulated 20.1 5.5E+02 0.012 21.9 9.5 37 142-178 127-163 (184)
440 cd06316 PBP1_ABC_sugar_binding 20.1 6.1E+02 0.013 22.3 8.9 74 144-222 14-87 (294)
441 PF00101 RuBisCO_small: Ribulo 20.0 4.1E+02 0.0088 20.3 7.7 75 70-170 9-84 (99)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-57 Score=422.16 Aligned_cols=252 Identities=37% Similarity=0.588 Sum_probs=223.8
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 021629 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (310)
Q Consensus 36 m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~ 115 (310)
|++++||+||++||+||||||.+|.. +.+.+++++.++|++|+|+||||||||+.||.|.| |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999874 23345568888999999999999999999999988 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHHHHH
Q 021629 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (310)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~--------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L 186 (310)
||+.++. |++++|+||++... .+.++++|+++++.||+||||||||+|++||||. .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999863 69999999998753 3468999999999999999999999999999998 7899999999999
Q ss_pred HHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCC
Q 021629 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (310)
Q Consensus 187 ~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~ 266 (310)
+++||||+||+||++++++.++.+.+ .+++++|.+||+++|+.+. +++++|+++||++++|+||++|+||||+.+
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998774 4799999999999987665 499999999999999999999999999987
Q ss_pred CCCCCCCCC---CCcchHhHhhHHHHHHHHHHHHHhcCCCccccccC
Q 021629 267 QNPPTGPRG---RIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLYE 310 (310)
Q Consensus 267 ~~~p~~~~~---~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl~ 310 (310)
. +.+.+. ..+.....++..+++..++++|+++|+||+|+||+
T Consensus 220 ~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALa 264 (316)
T COG0667 220 G--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALA 264 (316)
T ss_pred C--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5 333332 23344566788889999999999999999999984
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-56 Score=410.77 Aligned_cols=262 Identities=35% Similarity=0.532 Sum_probs=227.8
Q ss_pred cccccccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCch
Q 021629 30 ATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINS 109 (310)
Q Consensus 30 ~~~~~~m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~s 109 (310)
.+....|.+++||++|++||++|||||.+.. ..+. .++++++++|++|+|+|+||||||++||++.+
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~------~~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------ 72 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTT------FGGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------ 72 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeec------cccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------
Confidence 3445579999999999999999999983322 2233 68899999999999999999999999999988
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCC-----CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~-----~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L 183 (310)
|+++|++|++++. +|++++|+||++... ++.+..++...++.||++|+++|||||++||+|+ .+.+++|++|
T Consensus 73 E~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL 150 (336)
T KOG1575|consen 73 EELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRAL 150 (336)
T ss_pred HHHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHH
Confidence 9999999999874 389999999998643 5677899999999999999999999999999998 8999999999
Q ss_pred HHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCC
Q 021629 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (310)
Q Consensus 184 ~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~ 263 (310)
.+++++|||++||+|++++++|.++..++. ++|+++|++||++.|..+++++++.|++.||++++|+||++|+|||+
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 999999999999999999999999998855 67999999999999998888899999999999999999999999999
Q ss_pred CCCCC-CCCCCCCCCcch--HhH---hhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 264 YTPQN-PPTGPRGRIYTA--EYL---RNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 264 ~~~~~-~p~~~~~~~~~~--~~~---~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
|.... .|.+.....+.. +.. +.+..+++++.+||+++|+||+|+||
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlAL 279 (336)
T KOG1575|consen 228 YKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLAL 279 (336)
T ss_pred cccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 98643 444432221111 111 56788899999999999999999997
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=6.4e-53 Score=396.95 Aligned_cols=259 Identities=29% Similarity=0.425 Sum_probs=215.4
Q ss_pred cccceeecCCCCcccccceecccc-cCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCC--CCCCCCCchH
Q 021629 34 TAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (310)
Q Consensus 34 ~~m~~~~Lg~tg~~vs~lglG~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--g~s~~~~~sE 110 (310)
+.|++|+||+||++||+||||||+ +|.. .+.+++.++|+.|+++|||+||||+.||+ |.| |
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 459999999999999999999996 4321 24577899999999999999999999995 777 9
Q ss_pred HHHHHHHhhccCCCCCCcEEEEecCCCC--C----CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHH
Q 021629 111 TLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (310)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~--~----~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L 183 (310)
+.||++|++... .+|+++||+||+|.. + .+.+++.+++++++||++||+||||+|+||+|+. .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~-~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFA-AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhccc-CCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 999999986421 138999999998742 1 1356999999999999999999999999999987 6789999999
Q ss_pred HHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCC
Q 021629 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (310)
Q Consensus 184 ~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~ 263 (310)
++|+++|||++||||||++++++++.+.+...++++.++|++||++++..+..+++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 99999999999999999999999988877766778999999999999876544699999999999999999999999999
Q ss_pred CCCCCCCCCCCC-------CCcchHh-HhhHHHHHHHHHHHHHhcCCCccccccC
Q 021629 264 YTPQNPPTGPRG-------RIYTAEY-LRNLQPLLNRIKELGENYSKTSTQSLYE 310 (310)
Q Consensus 264 ~~~~~~p~~~~~-------~~~~~~~-~~~~~~~~~~l~~iA~~~g~s~~qvAl~ 310 (310)
+.+.. |.+.+. +.+.+.. .+...+++..|.++|+++|+||+|+||+
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~ 287 (346)
T PRK09912 234 YLNGI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALS 287 (346)
T ss_pred CCCCC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 86532 222110 0121221 1344566789999999999999999974
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2e-52 Score=389.35 Aligned_cols=254 Identities=26% Similarity=0.367 Sum_probs=211.2
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 021629 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (310)
Q Consensus 38 ~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al 117 (310)
||+||+||++||+||||||++.+. ..+++++.++|+.|+++|||+||||+.||.|.| |++||+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 588999999999999999973211 135688999999999999999999999999888 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCc
Q 021629 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (310)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~-----~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G~ 191 (310)
+.... +|++++|+||++.. ..+.+++.++++++.||++|||||||+|++|||+. .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86431 37999999998531 12457999999999999999999999999999987 578899999999999999
Q ss_pred ccEEEeecCCHHHHHHHHHHHHhcC-CCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCC
Q 021629 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 270 (310)
Q Consensus 192 ir~iGvS~~~~~~l~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p 270 (310)
||+||+|||+.++++++...+...+ ++|+++|++||+++++..+.+++++|+++||++++|+||++|+|+|++.... |
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~-~ 222 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI-P 222 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC-C
Confidence 9999999999999988877666655 5789999999999987533469999999999999999999999999986542 3
Q ss_pred CCCCCC-----Ccch----HhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 271 TGPRGR-----IYTA----EYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 271 ~~~~~~-----~~~~----~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
.+.+.. ++.. .......+.+++|+++|+++|+||+|+||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal 270 (317)
T TIGR01293 223 PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAI 270 (317)
T ss_pred CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 222211 1111 11223566778899999999999999987
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5.2e-52 Score=390.92 Aligned_cols=255 Identities=27% Similarity=0.416 Sum_probs=213.1
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCC-------CCCCCCCc
Q 021629 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (310)
Q Consensus 36 m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-------g~s~~~~~ 108 (310)
|+|++||+||++||+||||||+||.. .+++++.++|+.|++.||||||||+.||. |.|
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 24588999999999999999999999984 666
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-----
Q 021629 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (310)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~----------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~----- 173 (310)
|+++|++|+... +|++++|+||++... ...+++.+++++++||++||+||||+|+||||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 279999999985311 1357999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCC-CeeeeeeccCccccCccccchh
Q 021629 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (310)
Q Consensus 174 -------------~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~l 239 (310)
.+.+++|++|++|+++|||++||+|||+.++++++...+...+. .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 24689999999999999999999999999999988776665554 588999999999987654 699
Q ss_pred HHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCc---chHhHhhHHHHHHHHHHHHHhcCCCccccccC
Q 021629 240 AACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIY---TAEYLRNLQPLLNRIKELGENYSKTSTQSLYE 310 (310)
Q Consensus 240 ~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl~ 310 (310)
++|+++||++++|+||++|+|+|++.....|.+.+...+ .+.......++++.|+++|+++|+||+|+||+
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~ 294 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALA 294 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999865444443321111 11112345667789999999999999999973
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.8e-52 Score=376.23 Aligned_cols=215 Identities=34% Similarity=0.571 Sum_probs=192.0
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 021629 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (310)
Q Consensus 36 m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~ 115 (310)
+.+.+|++ |.+||.||||||+++.. +.+.+.|..|++.|+|+||||..||| |+.+|+
T Consensus 3 ~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG~ 59 (280)
T COG0656 3 KTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVGE 59 (280)
T ss_pred CceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHHH
Confidence 56788888 88899999999998764 44889999999999999999999998 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC--C-hHHHHHHHHHHHHcCcc
Q 021629 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGLV 192 (310)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~--~-~~~~~~~L~~L~~~G~i 192 (310)
+|+... .+|+++||+||++. ..++++.+.+++++||++||+||||||+||||.+. . .+++|.+|++|+++|||
T Consensus 60 aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~i 135 (280)
T COG0656 60 AIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLI 135 (280)
T ss_pred HHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCc
Confidence 999944 46999999999976 45678999999999999999999999999999752 2 67999999999999999
Q ss_pred cEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCC
Q 021629 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (310)
Q Consensus 193 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~ 272 (310)
|+||||||+.++++++++. .++.|.+||++||++.+..+ ++++|+++||.+++||||+.|.
T Consensus 136 r~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~------------- 196 (280)
T COG0656 136 RAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGG------------- 196 (280)
T ss_pred cEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCccccc-------------
Confidence 9999999999999999876 34789999999999999876 9999999999999999999652
Q ss_pred CCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
..+.++ .|.+||++||.||+||+|
T Consensus 197 ---~l~~~~----------~l~~Ia~k~g~t~AQv~L 220 (280)
T COG0656 197 ---KLLDNP----------VLAEIAKKYGKTPAQVAL 220 (280)
T ss_pred ---ccccCh----------HHHHHHHHhCCCHHHHHH
Confidence 123333 799999999999999987
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.7e-50 Score=372.93 Aligned_cols=244 Identities=23% Similarity=0.316 Sum_probs=203.5
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 021629 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (310)
Q Consensus 38 ~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al 117 (310)
||+||+||++||+||||||+||.. |+..+++++.++|+.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~-------~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV-------FGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC-------CCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999998863 23356689999999999999999999999999888 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCc
Q 021629 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (310)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~--~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~----~~~~~~~~~L~~L~~~G~ 191 (310)
++.+. +|+++||+||++... .+++++.+++++++||++||+||||+|+||+|+. .+.+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 87542 389999999997432 3568999999999999999999999999999974 235789999999999999
Q ss_pred ccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCC
Q 021629 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (310)
Q Consensus 192 ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~ 271 (310)
||+||+|||++++++.+.+......+.+.++|+.||+.++..+ +++++|+++||++++|+||++|+|++++.+...+
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~- 222 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHP- 222 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCC-
Confidence 9999999999999887765433222345567899999876543 6999999999999999999999999875321100
Q ss_pred CCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
. .+...++.+.++++|+++|+||+|+||
T Consensus 223 -------~---~~~~~~~~~~l~~~a~~~~~s~aq~al 250 (314)
T PLN02587 223 -------A---PPELKSACAAAATHCKEKGKNISKLAL 250 (314)
T ss_pred -------C---CHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 0 123456677899999999999999997
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=7e-48 Score=346.77 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=189.9
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 021629 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (310)
Q Consensus 38 ~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al 117 (310)
+.+|.+ |.+||.||||||+. +++++.+.++.|++.||||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 788987 99999999999972 2478999999999999999999999999 99999999
Q ss_pred hhccCC--CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-----------------ChHH
Q 021629 118 KERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (310)
Q Consensus 118 ~~~~~~--~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-----------------~~~~ 178 (310)
+..-.. .+|+++||+||++. ..+.++.++.++++||++||+||+|+|+||||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 966422 27999999999975 34789999999999999999999999999998652 2568
Q ss_pred HHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccccc
Q 021629 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
+|++||+++++|++|+||||||+..+|++++..+ .++|.++|+++||+.++.. ++++|+++||.+.|||||+.+
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998776 3899999999999888764 999999999999999999976
Q ss_pred ccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 259 ALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 259 ~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
-- ....+.++ .|.+||++||.||+||+|
T Consensus 214 ~~-------------~~~ll~~~----------~l~~iA~K~~kt~aQIlL 241 (300)
T KOG1577|consen 214 GR-------------GSDLLEDP----------VLKEIAKKYNKTPAQILL 241 (300)
T ss_pred CC-------------ccccccCH----------HHHHHHHHhCCCHHHHHH
Confidence 21 00223333 799999999999999986
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.6e-47 Score=345.41 Aligned_cols=236 Identities=42% Similarity=0.680 Sum_probs=205.3
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH
Q 021629 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (310)
Q Consensus 38 ~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al 117 (310)
+++||+||++||+||||||.++.. + .+.+++.++|+.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~-------~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG-------Y--VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC-------C--CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 578999999999999999998764 1 35689999999999999999999999999888 99999999
Q ss_pred hhccCCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-C-hHHHHHHHHHHHHcCcc
Q 021629 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (310)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~---~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-~-~~~~~~~L~~L~~~G~i 192 (310)
+..+ +|++++|+||++... .+.+++.+++++++||++|++||||+|+||+|+.. . ..++|++|+++|++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 389999999998642 12689999999999999999999999999999873 3 78999999999999999
Q ss_pred cEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCC
Q 021629 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (310)
Q Consensus 193 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~ 272 (310)
++||+|||+.+.+.++.+.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.|++++.....+.
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~- 217 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP- 217 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC-
Confidence 99999999999999887664 36899999999999998764 59999999999999999999999987665432211
Q ss_pred CCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
.. .....+..+|+++++|++|+||
T Consensus 218 -------~~------~~~~~~~~~~~~~~~s~~q~al 241 (285)
T cd06660 218 -------EG------DLLEALKEIAEKHGVTPAQVAL 241 (285)
T ss_pred -------hh------hHHHHHHHHHHHhCCCHHHHHH
Confidence 00 0345799999999999999987
No 10
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.1e-46 Score=326.33 Aligned_cols=235 Identities=21% Similarity=0.408 Sum_probs=210.0
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 021629 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (310)
Q Consensus 36 m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~ 115 (310)
|++.+|++.|+++|+|.+|+|++.. |+ ++..+....++.|++.|||+||-|+.||++.+ |+++|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7899999899999999999999865 33 45588999999999999999999999999988 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCC----------CCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHHH
Q 021629 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (310)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~----------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~ 184 (310)
+|+-.+.- |+++.|+||+|.. +++.+.++|..++|+||++|+|||+|+++||+||+ .+.+|+-++|.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99987754 8999999999862 46789999999999999999999999999999999 89999999999
Q ss_pred HHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCC
Q 021629 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (310)
Q Consensus 185 ~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~ 264 (310)
.|+++||||++|||||++.+++-+..... .++..||++.|+++.....++.+++|+++.|.+++||||++|-
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~----- 215 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGG----- 215 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCc-----
Confidence 99999999999999999999998876633 4688999999999999888899999999999999999999983
Q ss_pred CCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcC-CCcccccc
Q 021629 265 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS-KTSTQSLY 309 (310)
Q Consensus 265 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g-~s~~qvAl 309 (310)
.|.. .++.+++.++|..||.++| +|.++||+
T Consensus 216 ------------~F~g--~~~~q~l~~~l~~ia~e~ga~s~~~Vai 247 (298)
T COG4989 216 ------------LFLG--DDKFQRLRKVLDRIAEEYGAVSITAVAI 247 (298)
T ss_pred ------------cccC--CcchHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2332 2345566679999999999 79999875
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.1e-45 Score=338.08 Aligned_cols=232 Identities=35% Similarity=0.573 Sum_probs=190.3
Q ss_pred cceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcE
Q 021629 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (310)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~ 129 (310)
+||||||+++.. ..+.+++.++|+.|++.|||+||||+.||+|.+ |+.||++|+... .+|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~--~~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSR--VPRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTS--STGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------cccccccccccc--cccccc
Confidence 689999998752 357799999999999999999999999999887 999999999933 248999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CC-hHHHHHHHHHHHHcCcccEEEeecCCHHH
Q 021629 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (310)
Q Consensus 130 ~I~tK~~---~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~~~ 204 (310)
+|+||+. ......+++.+++++++||++||+||||+|+||+|+. .. .+++|++|++|+++|+||+||||||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1124688999999999999999999999999999998 55 89999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHh
Q 021629 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (310)
Q Consensus 205 l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~ 284 (310)
++++ .....++|+++|++||++++...+ +++++|+++||++++|+||++|+|++++....++........
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~------ 213 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD------ 213 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST------
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccccch------
Confidence 9888 233347899999999999655554 699999999999999999999999999876554322211111
Q ss_pred hHHHHHHHHHHHHHhcCCCcccccc
Q 021629 285 NLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 285 ~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
.......+.++++++|+|++|+||
T Consensus 214 -~~~~~~~l~~~a~~~g~s~~q~al 237 (283)
T PF00248_consen 214 -AQELADALRELAEEHGVSPAQLAL 237 (283)
T ss_dssp -HGGGHHHHHHHHHHHTSSHHHHHH
T ss_pred -hhhhhhhhhhhhhhcccccchhhh
Confidence 344456899999999999999987
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.9e-45 Score=337.11 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=185.8
Q ss_pred eecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHh
Q 021629 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (310)
Q Consensus 39 ~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~ 118 (310)
++|+ |++||+||||||++|....|+. ..+++++.++|+.|+++|||+||||+.||+|.+ |+.+|++++
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l~ 77 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREALH 77 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHHh
Confidence 4565 8999999999999986533331 235688999999999999999999999999877 999999996
Q ss_pred hccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHhhCCCccceEEeecCC------CCChHHHHHHHHH
Q 021629 119 ERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLGD 185 (310)
Q Consensus 119 ~~~~~~~R~~~~I~tK~~~~-------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd------~~~~~~~~~~L~~ 185 (310)
.. |+++||+||++.. +...+++.+++++++||++|++||||+|++|+++ ..+.+++|++|++
T Consensus 78 ~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 78 PY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred cC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 42 6899999998642 1246799999999999999999999999988742 2347899999999
Q ss_pred HHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCC
Q 021629 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYT 265 (310)
Q Consensus 186 L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~ 265 (310)
|+++||||+||+|||+.++++++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++.
T Consensus 153 l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~------ 219 (290)
T PRK10376 153 LQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFT------ 219 (290)
T ss_pred HHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCC------
Confidence 99999999999999999999988765 478999999999998643 59999999999999999997421
Q ss_pred CCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 266 PQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 266 ~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
.+. .+.+.++|+++|+||+|+||
T Consensus 220 -----------~~~----------~~~l~~ia~~~~~t~aq~al 242 (290)
T PRK10376 220 -----------PLQ----------SSTLSDVAASLGATPMQVAL 242 (290)
T ss_pred -----------hhh----------hHHHHHHHHHhCCCHHHHHH
Confidence 011 13789999999999999987
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.3e-45 Score=334.00 Aligned_cols=204 Identities=27% Similarity=0.447 Sum_probs=178.2
Q ss_pred cccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCC
Q 021629 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (310)
Q Consensus 46 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (310)
.+||.||||||+++. +++.++++.|++.|||+||||+.||+ |+.+|++|+..+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997632 67899999999999999999999996 9999999986542 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCcccEEEeecCCH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (310)
|+++||+||++. ...+++.+++++++||++||+||||+|+||||++ .+.+++|++|++|+++||||+||+|||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999853 3467999999999999999999999999999975 45789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchH
Q 021629 203 KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~ 281 (310)
++++++.+.+ +. +++++|++||++++.. +++++|+++||++++|+||++|.+.. .
T Consensus 134 ~~l~~~~~~~---~~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~~-----------------~- 189 (267)
T PRK11172 134 ALMKQAIAAV---GAENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVLK-----------------D- 189 (267)
T ss_pred HHHHHHHHhc---CCCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcccC-----------------C-
Confidence 9999887642 23 6899999999998752 59999999999999999999885421 1
Q ss_pred hHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 282 YLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 282 ~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
+.|+++|+++|+|++|+||
T Consensus 190 ---------~~l~~~a~~~~~s~aqval 208 (267)
T PRK11172 190 ---------PVIARIAAKHNATPAQVIL 208 (267)
T ss_pred ---------HHHHHHHHHhCCCHHHHHH
Confidence 1688999999999999987
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2e-45 Score=338.21 Aligned_cols=232 Identities=19% Similarity=0.223 Sum_probs=187.8
Q ss_pred CcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCC
Q 021629 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (310)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~ 124 (310)
+++||+||||||++|....|....++..+++++.++|+.|++.||||||||+.||. | |+++|++|+...
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--S------E~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--A------ETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--H------HHHHhhhhccCC---
Confidence 57899999999999863111111234567899999999999999999999999974 4 999999997421
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CCh-HHHHHHHHHHHHcCcccEEEeecCC
Q 021629 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (310)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~-~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (310)
+++++|+||.. ..+++.+++++++||++||+||||+|++|+|+. .+. +++|++|++|+++||||+||+|||+
T Consensus 71 -~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 46799999863 457899999999999999999999999999976 233 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchH
Q 021629 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (310)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~ 281 (310)
++++.++... .+|+++|++||++++..+..+++++|+++||++++|+||++|+|++... ..+ ..+
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~-----~~~--- 210 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP-----AQL--- 210 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc-----cch---
Confidence 9988776432 5899999999999997653369999999999999999999999975211 001 111
Q ss_pred hHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 282 YLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 282 ~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
......+.++.+++.++++||+|+||
T Consensus 211 --~~~~~~~~~~~~~~~~~~~s~aqlal 236 (292)
T PRK14863 211 --KGASGRLSRVRRMIAEGRSDPLQAAL 236 (292)
T ss_pred --hhhhHHHHHHHHHHHHcCCCHHHHHH
Confidence 12234456788899999999999987
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.4e-44 Score=325.02 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=182.4
Q ss_pred ceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHH
Q 021629 37 DKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF 116 (310)
Q Consensus 37 ~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~a 116 (310)
++.+| ++|+.||+||||||+++ ++++.++|++|++.|+||||||+.||+ |+.+|++
T Consensus 5 ~~~~l-~~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~a 60 (275)
T PRK11565 5 TVIKL-QDGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKA 60 (275)
T ss_pred ceEEc-CCCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHH
Confidence 34667 46999999999999752 378999999999999999999999986 9999999
Q ss_pred HhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC--ChHHHHHHHHHHHHcCcccE
Q 021629 117 IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKA 194 (310)
Q Consensus 117 l~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~--~~~~~~~~L~~L~~~G~ir~ 194 (310)
|+..+. +|++++|+||++ ..+++.+++++++||++|++||||+|+||+|+.. +..++|++|++|+++|+||+
T Consensus 61 l~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~ 134 (275)
T PRK11565 61 LKEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKS 134 (275)
T ss_pred HHHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeE
Confidence 987542 379999999994 3568899999999999999999999999999862 46899999999999999999
Q ss_pred EEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCC
Q 021629 195 VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPR 274 (310)
Q Consensus 195 iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~ 274 (310)
||+|||++++++++.. ..+++|.++|++||++.+.. +++++|+++||++++|+||++|.-
T Consensus 135 iGvSn~~~~~l~~~~~---~~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~-------------- 194 (275)
T PRK11565 135 IGVCNFQIHHLQRLID---ETGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGK-------------- 194 (275)
T ss_pred EeeccCCHHHHHHHHH---hCCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCc--------------
Confidence 9999999999998854 34467999999999998753 599999999999999999997630
Q ss_pred CCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 275 GRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
..+.. +.|.++|+++|+|++|+||
T Consensus 195 -~~~~~----------~~l~~ia~~~g~s~aq~aL 218 (275)
T PRK11565 195 -GVFDQ----------KVIRDLADKYGKTPAQIVI 218 (275)
T ss_pred -ccccC----------HHHHHHHHHhCCCHHHHHH
Confidence 01111 2689999999999999987
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.8e-40 Score=288.58 Aligned_cols=243 Identities=22% Similarity=0.289 Sum_probs=201.2
Q ss_pred cccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHH
Q 021629 34 TAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLL 113 (310)
Q Consensus 34 ~~m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~l 113 (310)
.-|+||.||+||++||+|+||...++.. +++.++++....+..|+..|||+|||++.||.++| |+++
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~l 86 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGL 86 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHH
Confidence 3599999999999999999999999886 55567788888888899999999999999999988 9999
Q ss_pred HHHHhhccCCCCCCcEEEEecCCCCC------CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHH
Q 021629 114 GRFIKERKQRDPEVEVTVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDG 182 (310)
Q Consensus 114 G~al~~~~~~~~R~~~~I~tK~~~~~------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~ 182 (310)
|.+++..+ |+..||+||+|... ++++++.+++++++||+||++||+|++++|..+..+ ..|++.+
T Consensus 87 g~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~ 162 (342)
T KOG1576|consen 87 GLALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPA 162 (342)
T ss_pred HHHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHH
Confidence 99999876 99999999999742 678999999999999999999999999999988732 5799999
Q ss_pred HHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeee--eccCccccCccccchhHHHHHcCceEEEccccccccc
Q 021629 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (310)
Q Consensus 183 L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L 260 (310)
|++||++||||+||++.++.+.+.++.+. .-...+++- .+|++.+.... ..+++.+..|++|+.-++++.|+|
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLL 237 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLL 237 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHh
Confidence 99999999999999999999999988643 223456655 66666665444 478889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 261 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 261 tg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
+.+-.++.+|.++ + ..+...+-.++|++.|+.+..+|+
T Consensus 238 t~~gp~~wHPaS~-------E----lk~~a~~aa~~Cq~rnv~l~kLA~ 275 (342)
T KOG1576|consen 238 TNQGPPPWHPASD-------E----LKEAAKAAAEYCQSRNVELGKLAM 275 (342)
T ss_pred hcCCCCCCCCCCH-------H----HHHHHHHHHHHHHHcCccHHHHHH
Confidence 9865555444322 2 222333456778888888777765
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=284.34 Aligned_cols=204 Identities=22% Similarity=0.301 Sum_probs=178.0
Q ss_pred cceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 021629 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (310)
Q Consensus 36 m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~ 115 (310)
|.||++|++|.++|.+|||||++... |. +..|++.+.++|+.|++.|||+||||..|..|.| |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 88999999999999999999998765 22 4467899999999999999999999999988877 999999
Q ss_pred HHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHHHHHHcC
Q 021629 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (310)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~~L~~~G 190 (310)
+|+... |++|+++||+...+ -.+.+.+++-++++|++|++||+|+|+||..+... ..++++.++++|++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999876 89999999997532 35789999999999999999999999999987621 224799999999999
Q ss_pred cccEEEeecC-CHHHHHHHHHHHHhcCCCeeeeeeccCccccCccc-cchhHHHHHcCceEEEcccccccccC
Q 021629 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALT 261 (310)
Q Consensus 191 ~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~Lt 261 (310)
+||++|+|.| +.+.+.+++.. .+++++|++||.++..... .+.+++|.++|++|+.++|+.+|-|.
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~ 211 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLL 211 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcc
Confidence 9999999999 45777777665 5799999999999976541 14899999999999999999999765
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.29 E-value=1.6e-06 Score=75.88 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcc
Q 021629 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
..+.|..||+++.+|+|..||+|.|++.++++++..++ +.|.++|++..-++.-|- ++.++|..|+|.++.++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 35789999999999999999999999999999988765 889999999998887665 59999999999998875
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=92.64 E-value=2.5 Score=40.32 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=96.6
Q ss_pred ccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCC---CCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCC
Q 021629 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (310)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (310)
..+|-=|.++-. |+.......+.++..++++..-+.- +-.+|..+.-+.- ...+.+.+..
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~~------ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVGN------ 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhCC------
Confidence 456777776543 4432233445677777787776544 4567866644331 2233333321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 205 (310)
+.-++|.+|.-..+.....+.+.+.++...+.+|....|++.+........+++++.+.++.+.+.+-.+|.+|..--.+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 35688999996543334456677777777777887666888888776678899999998888888899999999987766
Q ss_pred HHHH
Q 021629 206 RNAY 209 (310)
Q Consensus 206 ~~~~ 209 (310)
...+
T Consensus 177 iN~L 180 (365)
T PRK13796 177 INRI 180 (365)
T ss_pred HHHH
Confidence 6554
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.88 E-value=4.9 Score=37.23 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
++++..+.++.+++.|++.|+.-- |.... ...+.+ +++++.. . ++-|.-+.. ..++.+..++ +-
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~----g-~~~l~vD~n---~~~~~~~A~~-~~ 197 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA----P-DARLRVDAN---QGWTPEEAVE-LL 197 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC----C-CCeEEEeCC---CCcCHHHHHH-HH
Confidence 346677788888899999998642 22100 002223 3444332 1 455666664 2345443222 22
Q ss_pred HHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCcccc
Q 021629 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (310)
+.|+.+ ++.++..|-. .+-++.+.+|++.-.|. ..|-+-++.+.+.++++. ...+++|.....+-.
T Consensus 198 ~~l~~~-----~l~~iEeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GG 264 (316)
T cd03319 198 RELAEL-----GVELIEQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGG 264 (316)
T ss_pred HHHHhc-----CCCEEECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCC
Confidence 333444 4445555532 12366777888887666 445566788888877654 347777777655422
Q ss_pred CccccchhHHHHHcCceEEEccccccc
Q 021629 232 KPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 232 ~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
-.+-..+...|+++||.++..+-+..+
T Consensus 265 i~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 265 LTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 111124899999999999987655443
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=91.10 E-value=6.5 Score=35.44 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
.++..+.++.+++.|++.|-.-- |.. . ....+.+ +++++.- .+++.|..... ..++.+...+-++
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~-~---~~d~~~v-~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~~- 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRD-P---ARDVAVV-AALREAV----GDDAELRVDAN---RGWTPKQAIRALR- 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCC-H---HHHHHHH-HHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHHH-
Confidence 45666777888899999887532 111 0 0002223 4444432 13555555543 2355544433332
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
.|+.+ ++.++..|-.. +-++.+.+|++.-.+. ..|-+-++.+.+.++++. -.++++|+..+..-.-
T Consensus 151 ~l~~~-----~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDL-----GLDYVEQPLPA---DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhc-----CCCEEECCCCc---ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 33444 44555666432 2356677777775554 455666788888887654 3477887776654421
Q ss_pred ccccchhHHHHHcCceEEEccccccc
Q 021629 233 PEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
.+-..+.+.|+++|+.++..+.+..+
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchH
Confidence 11124899999999999987666544
No 22
>PRK08609 hypothetical protein; Provisional
Probab=90.09 E-value=11 Score=38.14 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=92.5
Q ss_pred HHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHH---HhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 77 ~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~a---l~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
..++++.|.+.|+..|=.++++....- ....+...+-.. ++......+.=+|++..-+... ++....-.+.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~-~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~-----~~g~~d~~~~ 424 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKV-ANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL-----PDGSLDYDDE 424 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccc-cCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec-----CCcchhhcHH
Confidence 445999999999999999888632100 000113322222 2222111111244554444322 1222223333
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeec------C--CHHHHHHHHHHHHhcCCCeeeeeec
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASNQVN 225 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~------~--~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (310)
.|+. .||+ +.-+|++-..+.+++++.+.++.+.|.+.-||=-. + -...++++.+.+...+..+.+|
T Consensus 425 ~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEIN--- 498 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELN--- 498 (570)
T ss_pred HHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEc---
Confidence 5554 5776 78888765456788889999999888877666332 1 1345667777666666655554
Q ss_pred cCccccCccccchhHHHHHcCceEEEccccc
Q 021629 226 YSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
-+.+...... .++..|.+.|+.+ +.++-+
T Consensus 499 a~~~r~~~~~-~~~~~~~e~Gv~i-~igSDA 527 (570)
T PRK08609 499 ANPNRLDLSA-EHLKKAQEAGVKL-AINTDA 527 (570)
T ss_pred CCccccCccH-HHHHHHHHcCCEE-EEECCC
Confidence 3333222222 5899999999974 434333
No 23
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=89.74 E-value=10 Score=35.66 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
.++..+.++.+.+.|++.|-.--..+...........+.+ +++++.. -+++.|..... ..++.+... +
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~----~ 207 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAI----R 207 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHH----H
Confidence 4667777788889999988753221110000000002233 3444432 14566666663 235554433 3
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
.+++|. ..++.+++.|-+. +-++.+.+|++.-.|. ..|=|.++.+.+.++++. -.++++|+...-+-.-
T Consensus 208 ~~~~l~--~~~i~~iEqP~~~---~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 277 (357)
T cd03316 208 LARALE--EYDLFWFEEPVPP---DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGGI 277 (357)
T ss_pred HHHHhC--ccCCCeEcCCCCc---cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 333342 2355566666432 2466777788775555 455666788888888654 2477777766554311
Q ss_pred ccccchhHHHHHcCceEEEccc
Q 021629 233 PEENGVKAACDELGITLIAYCP 254 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~p 254 (310)
.+-..+.+.|+++||.++..+-
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1112489999999999988764
No 24
>PRK05588 histidinol-phosphatase; Provisional
Probab=88.84 E-value=17 Score=32.54 Aligned_cols=168 Identities=10% Similarity=0.119 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCC-CC--chHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG-AI--NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~-~~--~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
....+.++.|.+.|+..+ .+++......+. .. .-+..+ +.++.+. ..+|++..-++. .++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~~-----~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELGM-----EKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEecc-----cCC-CHHHH
Confidence 345678999999999998 887742210000 00 012223 2233332 235666555542 222 34666
Q ss_pred HHHHHhhCCCccceEEeecCCCC-----------ChHH----HHHHHHHHHH-cCcccEEE---ee----c---------
Q 021629 152 KDSLFRLGLSSVELYQLHWAGIW-----------GNEG----FIDGLGDAVE-QGLVKAVG---VS----N--------- 199 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~~-----------~~~~----~~~~L~~L~~-~G~ir~iG---vS----~--------- 199 (310)
++.|++...||+ +..+|+.+.. +.++ .++.+.++.+ .|++.-+| +- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 778888888887 7889985321 2333 3466777666 46554444 11 0
Q ss_pred CCHHHHHHHHHHHHhcCCCeeeeeeccCc-cccCccccchhHHHHHcCceEEEccccc
Q 021629 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~-~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
.-...++++++.+.+.+..+.+|-..+.. ....+. ..++..|++.|+.+++.++=+
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~-~~~l~~~~~~g~~~i~lgSDA 219 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENL-VKIYKRFYELGGKYITLGSDA 219 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCH-HHHHHHHHHcCCcEEEEECCC
Confidence 01345566667777777767766432221 111111 137888999998866644444
No 25
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=88.76 E-value=18 Score=33.60 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=91.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
...+.++..++++.+.+.|++.+.-.. |...- +..-.+++ +.++.... -.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll--~~~l~~li-~~i~~~~~---~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTG--GEPLL--RKDLEDII-AALAALPG---IRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcC--ccCHHHHH-HHHHhcCC---CceEEEEcCchh---------HHH
Confidence 446778999999999999998776432 21111 01112222 22333310 246777776521 112
Q ss_pred HHHHHHHhhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCc----ccEEEeecCCHHHHHHHHHHHHhcC
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~---------~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~ 216 (310)
.+ ..|+..|++.|- +-||..+. ...+++++.++.+++.|. |..+-+-..+.+++.++++.++..+
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22 334455655442 44555443 246899999999999985 3345455667788999988887665
Q ss_pred CCeeeeeeccCccccCcc--------ccchhHHHHHcCceEEE
Q 021629 217 IPLASNQVNYSLIYRKPE--------ENGVKAACDELGITLIA 251 (310)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~--------~~~~l~~~~~~gi~v~a 251 (310)
+. +.-++|.++..... ..++++..+++|+.+..
T Consensus 188 v~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQ--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred Ce--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 43 33444554433210 11477777777655433
No 26
>PRK08392 hypothetical protein; Provisional
Probab=88.67 E-value=16 Score=31.93 Aligned_cols=186 Identities=16% Similarity=0.225 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021629 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (310)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (310)
...++++.|.+.|++.|=.+++...... ..-+..+.+ ++...... +=++++..-++..+ +. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~~-~i~il~GiE~~~~~-----~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEES-EIVVLAGIEANITP-----NG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhcc-CceEEEeEEeeecC-----Cc-chhHHHHH
Confidence 3567899999999999988877532110 000222222 22222110 12334444443211 11 22333445
Q ss_pred HhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEeec--------CCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 156 ~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~--------~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
+. .||+ +..+| +++....++..+.+.++.+.+.+.-+|=-. ...+.+.++++.+.+.+..+.+|- .+
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~ 159 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY 159 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC
Confidence 53 4666 67788 443333467778888888888876666321 113567777777887887777763 22
Q ss_pred CccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCccc
Q 021629 227 SLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQ 306 (310)
Q Consensus 227 n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~q 306 (310)
+.+.. .+++.|++.|+.+ +.++-+.. +..+.. .+...+++++.|.++.+
T Consensus 160 ----~~p~~-~~l~~~~~~G~~~-~igSDAH~---------------------~~~vg~----~~~a~~~~~~~g~~~~~ 208 (215)
T PRK08392 160 ----RVPDL-EFIRECIKRGIKL-TFASDAHR---------------------PEDVGN----VSWSLKVFKKAGGKKED 208 (215)
T ss_pred ----CCCCH-HHHHHHHHcCCEE-EEeCCCCC---------------------hHHCCc----HHHHHHHHHHcCCCHHH
Confidence 22322 4899999999875 33333221 111111 12457788899988876
Q ss_pred c
Q 021629 307 S 307 (310)
Q Consensus 307 v 307 (310)
+
T Consensus 209 ~ 209 (215)
T PRK08392 209 L 209 (215)
T ss_pred e
Confidence 5
No 27
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.45 E-value=3.1 Score=39.94 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021629 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (310)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (310)
....++++|++.|++++||+.+... ..-+.+..++ ..+.+..-+|..| +.+--......++.-
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~~-------Agit~v~~~G~dP-Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAKK-------AGITAVLGCGFDP-GITNVLAAYAAKELF 142 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHHH-------cCeEEEcccCcCc-chHHHHHHHHHHHhh
Confidence 3447999999999999999987754 3333333333 4577777776432 233333333333333
Q ss_pred HhhCCCccceEEeecCCC
Q 021629 156 FRLGLSSVELYQLHWAGI 173 (310)
Q Consensus 156 ~~L~~d~iDl~~lH~pd~ 173 (310)
. .+++||+|..+-|+.
T Consensus 143 ~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 143 D--EIESIDIYVGGLGEH 158 (389)
T ss_pred c--cccEEEEEEecCCCC
Confidence 2 589999999998875
No 28
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=87.84 E-value=19 Score=32.62 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEe-ecCCC--CChHH----HHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHh
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~l-H~pd~--~~~~~----~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (310)
.+.+.+.+..++.+ .-|-|+||+-.. .+|.. .+.++ +...++.+++.-.+- |.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 34555555555444 457899998532 23543 23333 333456666653443 89999999999999765
Q ss_pred cCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHH
Q 021629 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (310)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~ 294 (310)
+ ...+|-+ +..... ..+++.++++|..++.+.. .|. |.......+-+.........+++.-
T Consensus 96 -G-~~iINdi--sg~~~~---~~~~~l~~~~~~~vV~m~~--~g~----------p~~~~~~~~~~~~~~~~~~~~~~~i 156 (257)
T cd00739 96 -G-ADIINDV--SGGSDD---PAMLEVAAEYGAPLVLMHM--RGT----------PKTMQENPYYEDVVDEVLSFLEARL 156 (257)
T ss_pred -C-CCEEEeC--CCCCCC---hHHHHHHHHcCCCEEEECC--CCC----------CcccccCCCcccHHHHHHHHHHHHH
Confidence 2 2233322 222211 2589999999999999433 121 1111001111122334445555667
Q ss_pred HHHHhcCCCcccccc
Q 021629 295 ELGENYSKTSTQSLY 309 (310)
Q Consensus 295 ~iA~~~g~s~~qvAl 309 (310)
+.|.++|+++.++.+
T Consensus 157 ~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 157 EAAESAGVARNRIIL 171 (257)
T ss_pred HHHHHcCCCHHHEEE
Confidence 788889988776654
No 29
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=87.76 E-value=13 Score=33.63 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeee
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (310)
+.+.+.+..++.. .-|-|+||+-.=- +.....+.+...++.+++.-. .-|.+-+++++.++++++.++ | .+.+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~-~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~--G-~~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGT-AVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAK--G-PPLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCC-CchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCC--C-CCEEE
Confidence 3444444444433 5688999985421 111223445556666665423 348899999999999977633 2 33344
Q ss_pred eeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCC
Q 021629 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (310)
Q Consensus 223 q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~ 302 (310)
-+.. .....+ .+++.++++|+.++...--..|. | ...+...+.++++-+.|.++|+
T Consensus 97 sIs~--~~~~~~--~~~~l~~~~g~~vv~m~~~~~g~----------P----------~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SVSA--EGEKLE--VVLPLVKKYNAPVVALTMDDTGI----------P----------KDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eCCC--CCccCH--HHHHHHHHhCCCEEEEecCCCCC----------C----------CCHHHHHHHHHHHHHHHHHcCC
Confidence 3322 111112 48999999999998754322221 1 0111223444566667778888
Q ss_pred Ccccccc
Q 021629 303 TSTQSLY 309 (310)
Q Consensus 303 s~~qvAl 309 (310)
++.++.+
T Consensus 153 ~~~~Iil 159 (261)
T PRK07535 153 PPEDIYI 159 (261)
T ss_pred CHhHEEE
Confidence 7776654
No 30
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=86.46 E-value=28 Score=32.47 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=83.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
...+.++...+++.+.+.|+..|--+ | |+-.-+..=++++ +.+++.+. ..++.|+|-... +.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li-~~i~~~~~---l~~i~itTNG~l---------l~~ 105 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLV-ARLGKLPG---LEELSLTTNGSR---------LAR 105 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHH-HHHHhCCC---CceEEEEeChhH---------HHH
Confidence 34677899999999999999877643 3 2110000112223 22333321 125667666421 222
Q ss_pred HHHHHHHhhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCc----ccEEEeecCCHHHHHHHHHHHHhcC
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~---------~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~ 216 (310)
.-+.|+..|++++- +-|+..++ ...+.+++.++.+++.|. |..+-+...+.+++.++++.+...+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 33456667777665 45555543 136789999999999985 3344455678899999999888776
Q ss_pred CCeeeeeeccCccc
Q 021629 217 IPLASNQVNYSLIY 230 (310)
Q Consensus 217 ~~~~~~q~~~n~~~ 230 (310)
+.+. -++|-++.
T Consensus 184 i~~~--~ie~mP~g 195 (329)
T PRK13361 184 LDIA--FIEEMPLG 195 (329)
T ss_pred CeEE--EEecccCC
Confidence 5433 34444443
No 31
>PRK07945 hypothetical protein; Provisional
Probab=86.40 E-value=29 Score=32.61 Aligned_cols=160 Identities=13% Similarity=0.062 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHH---hhccCCCCCC-cEEEEecCCCCCCCCCHHHHHHHH
Q 021629 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI---KERKQRDPEV-EVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al---~~~~~~~~R~-~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
...+++..|.+.|+..+=.+++...... ....+...+-+.+ +...... .+ +|++..-++..+ +.+.+. .
T Consensus 112 ~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~-~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~----~ 184 (335)
T PRK07945 112 PIEEMARTAAALGHEYCALTDHSPRLTV-ANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQ----E 184 (335)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcch----h
Confidence 3567899999999999888877532100 0000122222211 1111111 12 334444343222 122222 2
Q ss_pred HHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeec------------CCHHHHHHHHHHHHhcCCCe
Q 021629 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGIPL 219 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~------------~~~~~l~~~~~~~~~~~~~~ 219 (310)
++.|+. .||+ +..+|+....+.++..+.|.++.+.+.+.-+|=-. .....+.++++.+.+.+..+
T Consensus 185 ~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~l 261 (335)
T PRK07945 185 PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAV 261 (335)
T ss_pred HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEE
Confidence 333443 5676 78889865455566778888888888888777321 11112456666677777766
Q ss_pred eeeeeccCccccCccccchhHHHHHcCceE
Q 021629 220 ASNQVNYSLIYRKPEENGVKAACDELGITL 249 (310)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (310)
.+|-..+ ...+.. .++..|++.|+.+
T Consensus 262 EINt~~~---r~~P~~-~il~~a~e~G~~v 287 (335)
T PRK07945 262 EINSRPE---RRDPPT-RLLRLALDAGCLF 287 (335)
T ss_pred EEeCCCC---CCCChH-HHHHHHHHcCCeE
Confidence 6664332 222332 4999999999975
No 32
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=86.17 E-value=10 Score=34.10 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=35.9
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..+++|++.|...+...|...|.. .-..+..+...+.+++|.++|+++|++.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL----------------TPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 367899999999988776543311 0123345566777888999999998754
No 33
>PRK07328 histidinol-phosphatase; Provisional
Probab=86.11 E-value=26 Score=31.68 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHHHHHHHCCCCeEECCcCcCCC------CCCCCCc----hHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 021629 77 AKAAFDTSLDNGITFFDTAEVYGSR------ASFGAIN----SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (310)
Q Consensus 77 ~~~~l~~A~~~Gin~~DtA~~Yg~g------~s~~~~~----sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~ 146 (310)
..+++..|.+.|+..+=.+++.... ...+-.. -+..+.+ ++....+.++=+|++..-++..+ .
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~-i~~l~~~y~~i~Il~GiE~~~~~------~ 92 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSE-VERLRARFPDLYVRLGIEADYHP------G 92 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHH-HHHHHHHcCCCeEEEEEEecccC------C
Confidence 5578999999999988777764320 0000000 0222222 11111111122555555554321 2
Q ss_pred HHHHHHHHHHhhCCCccceEEeecCCCC--------------ChHHHH----HHHHHHHHcCcccEEEeecC--------
Q 021629 147 VLAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEGFI----DGLGDAVEQGLVKAVGVSNY-------- 200 (310)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl~~lH~pd~~--------------~~~~~~----~~L~~L~~~G~ir~iGvS~~-------- 200 (310)
....+++.|++...||+ +..+|+.+.. +.++++ +.+.++.+.|.+.-+|=-..
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCC
Confidence 34556667777777887 8888985421 122333 34677778888777773321
Q ss_pred ---CHHHHHHHHHHHHhcCCCeeeeeecc--CccccCccccchhHHHHHcCceE
Q 021629 201 ---SEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITL 249 (310)
Q Consensus 201 ---~~~~l~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~~~l~~~~~~gi~v 249 (310)
..+.++++++.+...+..+.+|-..+ ......+.. .++..|++.|+.+
T Consensus 172 ~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~-~il~~~~~~g~~i 224 (269)
T PRK07328 172 REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSP-ALLRACRERGIPV 224 (269)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCH-HHHHHHHHcCCCE
Confidence 12345677777777777677664322 111222222 4899999999874
No 34
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=86.02 E-value=17 Score=34.50 Aligned_cols=144 Identities=19% Similarity=0.189 Sum_probs=93.0
Q ss_pred ccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCC---CCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCC
Q 021629 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (310)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (310)
..+|-=|..+-. |+.......+.++..+++....+.- +-.+|..+..+.. ...+-+.+..
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~~------ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVGG------ 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhCC------
Confidence 557777776533 3332223345677777776665422 3467865554432 1122233321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 205 (310)
..-++|.+|+-..+.....+.+.+.+.+.++.++....|++.+..-.....+++++.|.++.+.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35688999997544444566777777777788886555777777666678999999998887777899999999977666
Q ss_pred HHHH
Q 021629 206 RNAY 209 (310)
Q Consensus 206 ~~~~ 209 (310)
-..+
T Consensus 171 iN~l 174 (360)
T TIGR03597 171 INKL 174 (360)
T ss_pred HHHH
Confidence 5443
No 35
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=85.70 E-value=19 Score=31.17 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH-----
Q 021629 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD----- 153 (310)
Q Consensus 79 ~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~----- 153 (310)
++|...++-|-+.+|.....| .+-+.|+... ++.. .| ...+.+.+.+++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------------~LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------------ELLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------------HHHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 456677789999999764433 2446666532 1110 11 23566767777554
Q ss_pred ------HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 154 ------SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 154 ------sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
.|..+.-+..|.+.+..-= .........|+++..=|+-.-|++.||.-|..+.-+- ..|-.|..-+.+|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtL-Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~---~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTL-QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL---LRGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHH-HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH---hcCCCCCCCCCCCc
Confidence 4444444555555554311 0112234446667777888889999998888775432 22335777788888
Q ss_pred ccccCccc----cchhHHHHHcCceEEEcccccccc
Q 021629 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 228 ~~~~~~~~----~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
-++...-. .+..++|++.||.|.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 77765422 157899999999999999988764
No 36
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=84.68 E-value=29 Score=31.32 Aligned_cols=105 Identities=11% Similarity=-0.010 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChH-HHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNE-GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~-~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
.+++.+.+..++.++ -|-|+||+-. .|...+.+ +.-..+..+++.-. .-|.+-+++++.++++++.+. | ..-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G-~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G-KCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C-CcE
Confidence 456677777777665 4999999854 23333333 33333233332212 348899999999999977631 2 233
Q ss_pred eeeeccCccccCccccchhHHHHHcCceEEEcccc
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
+|-+. ..........+++.++++|..++.+..-
T Consensus 96 INsIs--~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 96 VNSIN--LEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EEeCC--CCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 33332 2211111124789999999999887543
No 37
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=84.20 E-value=33 Score=31.92 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
+++..+.+...++.|++.|=.-- +. .. ..+.+ +++++.. |.-++.|=.-. .++.+..+
T Consensus 133 ~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~-----d~~~v-~~vr~~~---~~~~l~vDaN~-----~~~~~~a~----- 190 (324)
T TIGR01928 133 DEQMLKQIESLKATGYKRIKLKI--TP-QI-----MHQLV-KLRRLRF---PQIPLVIDANE-----SYDLQDFP----- 190 (324)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe--CC-ch-----hHHHH-HHHHHhC---CCCcEEEECCC-----CCCHHHHH-----
Confidence 35666777777889999874321 11 11 02333 4455433 11233333322 34555432
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
.+++|. ..++.++..|-. .+-++.+.+|++.-.+. ..|-|.++.+.+..+++. -..+++|....-+-.-
T Consensus 191 ~~~~l~--~~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGi 260 (324)
T TIGR01928 191 RLKELD--RYQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGL 260 (324)
T ss_pred HHHHHh--hCCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCH
Confidence 134443 236666776642 33457788888775554 678888898988887654 2477777766543321
Q ss_pred ccccchhHHHHHcCceEEEcccccccc
Q 021629 233 PEENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
.+-..+.+.|+++||.++..+.+..|+
T Consensus 261 t~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 261 TEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 111248999999999999877665553
No 38
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.14 E-value=2.4 Score=39.53 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=89.7
Q ss_pred ccccccceeecCCCCcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCC--eEECCcCcCCCCCCCCCc
Q 021629 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (310)
Q Consensus 31 ~~~~~m~~~~Lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DtA~~Yg~g~s~~~~~ 108 (310)
++.++|.+..++ .|..|-.+|+|. +|.. .++.|-..|.+ .||+++.--
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~~kk--------- 218 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSSKKK--------- 218 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCchhH---------
Confidence 455689999998 499999999988 6654 47777777765 677653211
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHH
Q 021629 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (310)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~ 188 (310)
| ++++..+. |.+++++|- ++. .+++..++. ++.+.+-.+- .-..-..++-||.
T Consensus 219 -e----ea~~~LGA----d~fv~~~~d--------~d~-~~~~~~~~d-g~~~~v~~~a--------~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 219 -E----EAIKSLGA----DVFVDSTED--------PDI-MKAIMKTTD-GGIDTVSNLA--------EHALEPLLGLLKV 271 (360)
T ss_pred -H----HHHHhcCc----ceeEEecCC--------HHH-HHHHHHhhc-Ccceeeeecc--------ccchHHHHHHhhc
Confidence 4 56777772 444444433 222 222333322 2222222221 1123345667889
Q ss_pred cCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceE
Q 021629 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (310)
Q Consensus 189 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (310)
.|++-.+|+-+.+ ..+.-+- .-+-...+-.|.+-...+.++++++|.+++|..
T Consensus 272 ~Gt~V~vg~p~~~-~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 272 NGTLVLVGLPEKP-LKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCEEEEEeCcCCc-ccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 9999999997752 2211110 113334455665555555667999999998765
No 39
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=82.74 E-value=36 Score=30.69 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEE-eecCCC--CChH-H---HHHHHHHHHHc-CcccEEEeecCCHHHHHHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNE-G---FIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lH~pd~--~~~~-~---~~~~L~~L~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 213 (310)
.+++.+.+..++.+ .-|.++||+-- --+|+. .+.+ | +...++.+++. + + -+.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~-~-plsiDT~~~~vi~~al~~-- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD-V-PISVDTYRAEVARAALEA-- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-C-eEEEeCCCHHHHHHHHHc--
Confidence 35666666655554 45789999832 223433 2223 2 55555666665 4 3 489999999999999765
Q ss_pred hcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCC-CCcchHhHhhHHHHHHH
Q 021629 214 KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG-RIYTAEYLRNLQPLLNR 292 (310)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~ 292 (310)
| ...+|-+.. .. .+ ++++.++++|..++.+.-- |. |..... ..+ +...+.....+++
T Consensus 95 --G-~~iINsis~--~~--~~--~~~~l~~~~~~~vV~m~~~--g~----------p~~~~~~~~~-~~~~~~~~~~~~~ 152 (257)
T TIGR01496 95 --G-ADIINDVSG--GQ--DP--AMLEVAAEYGVPLVLMHMR--GT----------PRTMQENPHY-EDVVEEVLRFLEA 152 (257)
T ss_pred --C-CCEEEECCC--CC--Cc--hhHHHHHHcCCcEEEEeCC--CC----------CcccccCCCc-ccHHHHHHHHHHH
Confidence 2 233433322 21 12 5899999999999985422 21 000000 001 1122334444455
Q ss_pred HHHHHHhcCCCcccccc
Q 021629 293 IKELGENYSKTSTQSLY 309 (310)
Q Consensus 293 l~~iA~~~g~s~~qvAl 309 (310)
..+.+.+.|+.+.++.|
T Consensus 153 ~i~~~~~~Gi~~~~iil 169 (257)
T TIGR01496 153 RAEELVAAGVAAERIIL 169 (257)
T ss_pred HHHHHHHcCCCHHHEEE
Confidence 55667788887666543
No 40
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=82.71 E-value=36 Score=30.61 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEE-eecCCCC--C----hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHh
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGIW--G----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lH~pd~~--~----~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (310)
.+.+.+.+..++.+ .-|-|+||+-. --+|+.. + .+.+...++.+++.-.+ -|.+.+++++.++++++.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g-- 96 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAG-- 96 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhC--
Confidence 45666666655554 55889999853 3335431 1 23455666777665333 3899999999999997762
Q ss_pred cCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHH
Q 021629 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (310)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~ 294 (310)
.+-+|-+ +..... .++++.++++|..++.+..-..|.-. ... ..| +...+...+.++++-
T Consensus 97 ---~~iINdi--s~~~~~---~~~~~l~~~~~~~vV~m~~~~~~~~~----~~~-------~~~-~~~~~~~~~~~~~~i 156 (258)
T cd00423 97 ---ADIINDV--SGGRGD---PEMAPLAAEYGAPVVLMHMDGTPQTM----QNN-------PYY-ADVVDEVVEFLEERV 156 (258)
T ss_pred ---CCEEEeC--CCCCCC---hHHHHHHHHcCCCEEEECcCCCCccc----ccC-------CCc-chHHHHHHHHHHHHH
Confidence 2333322 222111 25899999999999887644322100 000 001 222334445555666
Q ss_pred HHHHhcCCCcccccc
Q 021629 295 ELGENYSKTSTQSLY 309 (310)
Q Consensus 295 ~iA~~~g~s~~qvAl 309 (310)
+.+.+.|+++.++.+
T Consensus 157 ~~~~~~Gi~~~~Iil 171 (258)
T cd00423 157 EAATEAGIPPEDIIL 171 (258)
T ss_pred HHHHHcCCCHHHEEE
Confidence 677788887776654
No 41
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=82.21 E-value=19 Score=33.62 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=56.9
Q ss_pred HHHHhhCCCccceEEeec-CCC--CChHHHHHHHHHHHHc-CcccEEEeecC---CHHHHHHHHHHHHhcCCCeeeeeec
Q 021629 153 DSLFRLGLSSVELYQLHW-AGI--WGNEGFIDGLGDAVEQ-GLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~-pd~--~~~~~~~~~L~~L~~~-G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (310)
+.-+.+|.|+||+-+.-. |+. ...++....++...+. +.=-.|..|.. +++.++++++.++.. ++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECC
Confidence 444678888888765332 332 2344455555555433 32233666633 789999998775422 24443332
Q ss_pred cCccccCccccchhHHHHHcCceEEEccccc
Q 021629 226 YSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
. +..+ .+.+.|+++|..+++.+|..
T Consensus 161 ~-----en~~-~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 E-----DNYK-KIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H-----HHHH-HHHHHHHHhCCeEEEEcHHH
Confidence 2 1122 59999999999999988654
No 42
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.91 E-value=8.7 Score=32.42 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccCccccCc-----c-------c--cchhHHHHHcCceEEEcccccccccCCCCCCCC
Q 021629 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-----E-------E--NGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-----~-------~--~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~ 268 (310)
..++++.+.+++.++.+..+...++...... . + ...++.|++.|+..+...+......
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~-------- 98 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG-------- 98 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS--------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc--------
Confidence 3456666667777777665555554444211 1 0 1478999999999988765421110
Q ss_pred CCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
.........+...+.+.++.++|+++|+++
T Consensus 99 ------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 99 ------PEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp ------TTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 012233566777788889999999999754
No 43
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=81.78 E-value=13 Score=33.56 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=32.0
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..++.|++.|..++.... +. +.. . . ...+......+.+.++.++|+++|+.+
T Consensus 98 ~~i~~a~~lG~~~v~~~~---~~----~~~-----~---~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l 149 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG---YD----VYY-----E---E-HDEETRRRFREGLKEAVELAARAQVTL 149 (279)
T ss_pred HHHHHHHHhCCCEEEecC---cc----ccc-----C---c-CCHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 478889999998886531 10 000 0 0 012334556667778888999998854
No 44
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=80.14 E-value=45 Score=33.26 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
++-|-++|++...+.+.+-++|.+-+ ..+-|-..++...+.++.+.++++.++.|.... .+.+++.|-
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 67777777766433323445565555 234444455555666665568899999887622 222333322
Q ss_pred H-H----------HHcCcccEEEeecC---CHHHHHHHHHHHHhcCCCeee
Q 021629 185 D-A----------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 185 ~-L----------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+ + .+.+.|.-||.++. .+..+.++.+.++..|+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 1 1 12456888998763 345566666666666655443
No 45
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.75 E-value=31 Score=31.03 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=31.2
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..++.|++.|+.++...+... +. ..-.+...+...+.+.++.++|+++|+..
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~------------~~----~~~~~~~~~~~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDV------------YY----EQANNETRRRFIDGLKESVELASRASVTL 154 (283)
T ss_pred HHHHHHHHcCCCEEEECCccc------------cc----cccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 367889999999887532100 00 00012334455666778888898888743
No 46
>PRK06740 histidinol-phosphatase; Validated
Probab=79.55 E-value=26 Score=32.97 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHHHHHHHhhCCCccceEEeecCCCC--------------C----hHHHHHHHHHHHHcCcccEEEee------cCC---
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGIW--------------G----NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~~--------------~----~~~~~~~L~~L~~~G~ir~iGvS------~~~--- 201 (310)
..++..|.....||+ +.-+|+.+.. + .+...+.+.++.+.|++..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345667777788887 8888975421 1 12355677888889888777722 111
Q ss_pred ---HHHHHHHHHHHHhcCCCeeeeee-ccC--ccccCccccchhHHHHHcCceEE
Q 021629 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS--LIYRKPEENGVKAACDELGITLI 250 (310)
Q Consensus 202 ---~~~l~~~~~~~~~~~~~~~~~q~-~~n--~~~~~~~~~~~l~~~~~~gi~v~ 250 (310)
.+.++++++.+...+..+.+|-. .+. .....+.. .+++.|++.|+.++
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEE
Confidence 24677777777777877777753 121 11112222 48999999999863
No 47
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=79.00 E-value=55 Score=30.43 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
..+.++..++++.+.+.|+..+.-+ | |+-.-+..-.+++.. ++.... -+++.|+|-... +.+
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~l---------l~~- 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGLL---------LAR- 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCchh---------HHH-
Confidence 4577899999999999999877643 2 211001111233332 333211 136778885421 111
Q ss_pred HHHHHHhhCCCccceEEeecCCC----------CChHHHHHHHHHHHHcCcc----cEEEeecCCHHHHHHHHHHHHhcC
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRG 216 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~----------~~~~~~~~~L~~L~~~G~i----r~iGvS~~~~~~l~~~~~~~~~~~ 216 (310)
.-+.|++.|+++|- +-++..++ ...+++++.++.+++.|.- ..+-+.+.+.+++.++++.+...+
T Consensus 104 ~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~g 182 (334)
T TIGR02666 104 HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERG 182 (334)
T ss_pred HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 23445666665443 33444332 1368899999999999852 223345678889999999888777
Q ss_pred CCeee
Q 021629 217 IPLAS 221 (310)
Q Consensus 217 ~~~~~ 221 (310)
+.+.+
T Consensus 183 v~~~~ 187 (334)
T TIGR02666 183 VTLRF 187 (334)
T ss_pred CeEEE
Confidence 65433
No 48
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.25 E-value=35 Score=30.59 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=30.3
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..++.|++.|+..+....... +. ....+...+...+.+.++.++|+++|+..
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~------~~----------~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDV------YY----------EEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred HHHHHHHHhCCCEEEECCccc------cc----------ccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 478888888888887421100 00 00012334556666777888888888743
No 49
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=77.89 E-value=64 Score=30.53 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
.++..+.+..+++.|++.|=.-- .+.+ +++++.. -+++.|..-.. ..++.+... +
T Consensus 127 ~~~~~~~a~~~~~~Gf~~~KiKv-------------~~~v-~avre~~----G~~~~l~vDaN---~~w~~~~A~----~ 181 (361)
T cd03322 127 IPELLEAVERHLAQGYRAIRVQL-------------PKLF-EAVREKF----GFEFHLLHDVH---HRLTPNQAA----R 181 (361)
T ss_pred HHHHHHHHHHHHHcCCCeEeeCH-------------HHHH-HHHHhcc----CCCceEEEECC---CCCCHHHHH----H
Confidence 35566677777889998774210 1122 3344332 13454544442 234554322 2
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
.++.|. .+++.++..|-+ .+-++.+.+|++...+. ..|-|-++...+..+++. -.++++|+...-+-.-
T Consensus 182 ~~~~l~--~~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGi 251 (361)
T cd03322 182 FGKDVE--PYRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGI 251 (361)
T ss_pred HHHHhh--hcCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 233332 346777777643 23377788888887665 777888888888888654 3477887776543321
Q ss_pred ccccchhHHHHHcCceEEEccc
Q 021629 233 PEENGVKAACDELGITLIAYCP 254 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~p 254 (310)
.+-..+.+.|+++||.++.++.
T Consensus 252 t~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 252 TPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHHHHHHHcCCeeeccCC
Confidence 1112489999999999987654
No 50
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=77.85 E-value=39 Score=32.44 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=60.3
Q ss_pred HhhCCCccceEEeecCCC------CChHHHHHHHHHHHH-cCcccEEEee---cCCHHHHHHHHHHHHhcCCCeeeeeec
Q 021629 156 FRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVE-QGLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (310)
Q Consensus 156 ~~L~~d~iDl~~lH~pd~------~~~~~~~~~L~~L~~-~G~ir~iGvS---~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (310)
+.|+ +|++.||.-.. .+.++..+.+++..+ .+.---|+=| ..+++.++++++.+.-. ++-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~--kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGE--RCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCC--CcEEEecC
Confidence 4555 68888886432 235677777777644 3443344444 56889999997775421 34443332
Q ss_pred cCccccCccccchhHHHHHcCceEEEccccccccc
Q 021629 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (310)
Q Consensus 226 ~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L 260 (310)
... ..+ .+.+.|+++|..+++++|..-|.+
T Consensus 225 ~e~----Ny~-~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 225 LDL----DYE-KIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred chh----hHH-HHHHHHHHhCCeEEEEcCCcHHHH
Confidence 221 122 589999999999999998876643
No 51
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.75 E-value=58 Score=30.68 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCC-CC-chHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFG-AI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~-~~-~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
.++..+.+..+.+.|++.|=.--....+..+. .+ ..+.-.=+++++.- -.++-|..=.. ..++.+. .
T Consensus 124 ~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~----g~~~~l~vDaN---~~~~~~~----A 192 (352)
T cd03325 124 PSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAV----GPDIDIGVDFH---GRVSKPM----A 192 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhh----CCCCEEEEECC---CCCCHHH----H
Confidence 35556667777889999886532111000000 00 00122224454432 13444444332 1344443 2
Q ss_pred HHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccc
Q 021629 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (310)
.+.++.|. ..++.++..|-. .+-++.+.+|+++.-+. ..|-|.++.+.+..+++. -.++++|.....+-
T Consensus 193 ~~~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~G 262 (352)
T cd03325 193 KDLAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAG 262 (352)
T ss_pred HHHHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccC
Confidence 33334442 245666666643 22377788888775554 667777888888888653 23777777765432
Q ss_pred cCccccchhHHHHHcCceEEEcc
Q 021629 231 RKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
--..-..+.+.|+++||.++.++
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 11111248999999999998776
No 52
>PRK07329 hypothetical protein; Provisional
Probab=77.03 E-value=54 Score=29.22 Aligned_cols=106 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred HHHHHHHHhhCCCccceEEeecCCC----------CChHHHH----HHHHHHHHcC-cccEEEeec----------CC--
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFI----DGLGDAVEQG-LVKAVGVSN----------YS-- 201 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~----------~~~~~~~----~~L~~L~~~G-~ir~iGvS~----------~~-- 201 (310)
..++..|.+...||+ +.-+|+.+. .+.++++ +.+.++.+.+ .+..+|=-. .+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 446666777788988 889998532 1233444 7788878776 655555111 11
Q ss_pred --HHHHHHHHHHHHhcCCCeeeeeeccC-ccccCccccchhHHHHHcCceEEEccccc
Q 021629 202 --EKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 202 --~~~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
.+.++++++.+...+..+.+|-..+. -...... ..+++.|++.|+..++.+.=+
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~~gSDA 218 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFSIGSDA 218 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEEecCCC
Confidence 24455666777777777777654331 1111111 247999999998766655544
No 53
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=76.72 E-value=35 Score=31.07 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=8.2
Q ss_pred CccceEEeecCCC
Q 021629 161 SSVELYQLHWAGI 173 (310)
Q Consensus 161 d~iDl~~lH~pd~ 173 (310)
.-.|++-|=-|-.
T Consensus 43 ~GaD~iELGvPfS 55 (265)
T COG0159 43 AGADILELGVPFS 55 (265)
T ss_pred CCCCEEEecCCCC
Confidence 3467777777644
No 54
>PRK14017 galactonate dehydratase; Provisional
Probab=76.62 E-value=54 Score=31.28 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcC-----cCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEV-----YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~-----Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (310)
+++..+.+..+++.|++.|=.--. ++.... +....+.+ +++++.- -+++.|..=.. ..++.+.
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~--~~~d~~~i-~avr~~~----g~~~~l~vDaN---~~w~~~~-- 192 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRK--VDAAVARV-AAVREAV----GPEIGIGVDFH---GRVHKPM-- 192 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHH--HHHHHHHH-HHHHHHh----CCCCeEEEECC---CCCCHHH--
Confidence 466667777888999998864210 000000 00002222 3343332 13444444442 2345443
Q ss_pred HHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
..+.++.|. .+++.++..|-. . +-++.+.+|.+...+. ..|-|-++.+.+..+++. -.++++|+..+
T Consensus 193 --A~~~~~~l~--~~~~~~iEeP~~--~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~ 260 (382)
T PRK14017 193 --AKVLAKELE--PYRPMFIEEPVL--P-ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLS 260 (382)
T ss_pred --HHHHHHhhc--ccCCCeEECCCC--c-CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCcc
Confidence 223333342 246666776643 1 2257788888877655 677778888888888654 24777777765
Q ss_pred ccccCccccchhHHHHHcCceEEEccc
Q 021629 228 LIYRKPEENGVKAACDELGITLIAYCP 254 (310)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~~p 254 (310)
.+-.-.+-..+.+.|+++||.++.++.
T Consensus 261 ~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 261 HAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 442111112489999999999998764
No 55
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=76.58 E-value=26 Score=33.96 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=57.3
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC-----ccceEEeecCCCCC-----hHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG-----NEGF 179 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d-----~iDl~~lH~pd~~~-----~~~~ 179 (310)
|+-|-++|++...+.+.+=++|.|-+.. +-+-..++...++++.+ -+.++.+|.|+... .+.+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~-------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT-------ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch-------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 7777788876654332345677766642 22222344444444322 35678888887632 3334
Q ss_pred HHHHHH-H------HHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee
Q 021629 180 IDGLGD-A------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 180 ~~~L~~-L------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+++|-+ + ++.++|--||-++.+...+.++.+.++..|+++.+
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 444432 2 23466888887766444455555556666665444
No 56
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.21 E-value=30 Score=31.01 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCC----------------CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~----------------g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~ 135 (310)
.+.++..++.+.+-+.||.||=|...-.. +.. ++-.+| +.+.+.+ ..++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl----~n~~lL-~~~A~tg-----kPvIlSTG~ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDL----TNLPLL-EYIAKTG-----KPVILSTGM 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGT----T-HHHH-HHHHTT------S-EEEE-TT
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccc----cCHHHH-HHHHHhC-----CcEEEECCC
Confidence 35788999999999999999977643211 000 112222 2222222 567777755
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC--hHH-HHHHHHHHHHcCcccEEEeecCCHHHHHHHHH
Q 021629 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEG-FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (310)
Q Consensus 136 ~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~--~~~-~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~ 210 (310)
.+.+.|.++++...++-+ .|+.++|-...+| .++ -+..|..|++.=- --||+|.|+.....-++.
T Consensus 123 ------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~A 190 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAA 190 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHH
Confidence 457777777777644444 5899999877644 333 3666666665422 668999997754444433
No 57
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=75.90 E-value=61 Score=30.40 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCC-CCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s-~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
.++..+.++.+++.|++.|=.--..+.... .+.....+.+ +++++.. -+++-|..=.. ..++.+...+
T Consensus 121 ~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~----g~~~~l~vDan---~~~~~~~A~~--- 189 (341)
T cd03327 121 LDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAV----GYDVDLMLDCY---MSWNLNYAIK--- 189 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHh----CCCCcEEEECC---CCCCHHHHHH---
Confidence 455666777888999998754211111000 0000012233 3343332 12333333332 2345544332
Q ss_pred HHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCcccc
Q 021629 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (310)
.+++|. ..++.++..|-+ .+-++.+.+|+++..|. ..|-+.++...+.++++. -..+++|...+-.-.
T Consensus 190 -~~~~l~--~~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GG 258 (341)
T cd03327 190 -MARALE--KYELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGG 258 (341)
T ss_pred -HHHHhh--hcCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCC
Confidence 333332 246666666643 23366677788777666 677788888888888654 247788777655432
Q ss_pred CccccchhHHHHHcCceEEEcc
Q 021629 232 KPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 232 ~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
-.+-..+.+.|+++|+.++.++
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 1122248999999999998774
No 58
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=73.53 E-value=77 Score=30.48 Aligned_cols=152 Identities=10% Similarity=-0.007 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 73 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
++++..+.++.+++ .|++.|=.-- |...- ....+.+ +++++.. .++.|..-.. ..++.+...
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~---~~di~~v-~avRea~-----~~~~l~vDaN---~~w~~~~A~--- 230 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPG---EEEIEAV-KALAEAF-----PGARLRLDPN---GAWSLETAI--- 230 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCH---HHHHHHH-HHHHHhC-----CCCcEEEeCC---CCcCHHHHH---
Confidence 34555566666665 6999875421 21100 0001222 3344332 1333433332 235555433
Q ss_pred HHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccc
Q 021629 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (310)
+.+++|. - ++.++..|-. -++.+.+|++...+- ..|-|-++.+++.++++. -..+++|.....+-
T Consensus 231 -~~~~~l~--~-~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~G 296 (395)
T cd03323 231 -RLAKELE--G-VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWG 296 (395)
T ss_pred -HHHHhcC--c-CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeecccccc
Confidence 3334453 2 6777777753 477788888876655 667777787888777654 24777777665433
Q ss_pred cCccccchhHHHHHcCceEEEcccc
Q 021629 231 RKPEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
--.+-..+.+.|+++||.++.++..
T Consensus 297 Git~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 297 GMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCc
Confidence 2112224899999999999988764
No 59
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=73.26 E-value=29 Score=33.44 Aligned_cols=90 Identities=12% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+.+.+.+.+.+++..+ |=+|.+.||--- +.+.++.++++| |..|+-+-...-+...+.
T Consensus 136 ~mt~d~~~~~ie~qa~----dGVDfmTiH~Gi------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~---------- 193 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAK----DGVDFMTIHAGV------LLEYVERLKRSG--RITGIVSRGGAILAAWML---------- 193 (423)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch------hHHHHHHHHhCC--CccCeecCcHHHHHHHHH----------
Confidence 4677778777777765 457999999742 678899999999 555666555444443322
Q ss_pred eeeeccCccccCccccchhHHHHHcCceEEEcccccccc
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
....-||++..-. .+++.|+++++.+ +|+-|+
T Consensus 194 -~~~~ENPlye~fD--~lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 194 -HHHKENPLYKNFD--YILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred -HcCCcCchHHHHH--HHHHHHHHhCeee----eccCCc
Confidence 1234566665543 5999999999998 466554
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=72.04 E-value=20 Score=31.93 Aligned_cols=105 Identities=17% Similarity=0.069 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-ChHHHHHHHHHHHHcC-cccEEEeecCCHHHHHHHHHHHHhcCCCe
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-~~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (310)
.+.+...+-++. |..+|+++|++-..-.+... -.++.++.++++++.+ .++...++.-..+.++.+.+. .+
T Consensus 16 ~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~------g~ 88 (265)
T cd03174 16 FSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA------GV 88 (265)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC------Cc
Confidence 455555554444 67789888887665544221 1356788888888888 567667776555555555433 24
Q ss_pred eeeeeccCccc--------cCc----c-ccchhHHHHHcCceEEEcc
Q 021629 220 ASNQVNYSLIY--------RKP----E-ENGVKAACDELGITLIAYC 253 (310)
Q Consensus 220 ~~~q~~~n~~~--------~~~----~-~~~~l~~~~~~gi~v~a~~ 253 (310)
+.+++.+..-+ +.. + -...+++++++|+.+...-
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44444443331 111 0 0146778888888876554
No 61
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=72.02 E-value=1e+02 Score=30.16 Aligned_cols=111 Identities=23% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
..+.+.+++.++..++ |+.++|++|.+.-...++ |.+.+++|++..-.-..-..+....+.+.+...|
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~-------l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~G---- 293 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTP-------LAKAVEKGKLPPPATPAERADMYAYGVEFLAKAG---- 293 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCH-------HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCC----
Confidence 4678888888877664 899999998876422111 2234555654311000001122223333333333
Q ss_pred eeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCC
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~ 263 (310)
..|.+.+-+.+...+.......-..+..+++.++-++|.+.|.
T Consensus 294 y~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~ 336 (449)
T PRK09058 294 WRQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGY 336 (449)
T ss_pred CeEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCE
Confidence 3444444444433211244444555788899888888887663
No 62
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=71.72 E-value=33 Score=33.21 Aligned_cols=90 Identities=12% Similarity=0.203 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+.+.+.+.+.+++..+ |=+|.+.||--- +.+.++.++++| |..|+-+-...-+...+.
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcGi------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~---------- 196 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCGV------TRETLERLKKSG--RIMGIVSRGGSFLAAWML---------- 196 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch------hHHHHHHHHhcC--CccCeecCCHHHHHHHHH----------
Confidence 4677778777777765 458999999742 578889999999 555666655444443322
Q ss_pred eeeeccCccccCccccchhHHHHHcCceEEEcccccccc
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
....-||++..-. .+++.|++++|.+ +|+-|+
T Consensus 197 -~n~~ENPlye~fD--~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 197 -HNNKENPLYEHFD--YLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred -HcCCcCchHHHHH--HHHHHHHHhCeee----eccCCc
Confidence 2224566665544 5999999999998 466554
No 63
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=71.48 E-value=11 Score=33.70 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=48.5
Q ss_pred CCCcccccceecccc---cCCCCCCCCCcCchhhHHHHHHHHHHH----HHCCCCeEECCcC---cCCCCCCCCCchHHH
Q 021629 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTAEV---YGSRASFGAINSETL 112 (310)
Q Consensus 43 ~tg~~vs~lglG~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~A----~~~Gin~~DtA~~---Yg~g~s~~~~~sE~~ 112 (310)
.+|+.+|.+||...+ ||+. .+..++++.+++..| .+.|||.|-.|.. |.... ++-
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d-------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD-------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC-------HHH
Confidence 479999999999865 4332 344567777776655 5789999998843 33322 333
Q ss_pred HHHHHhhcc---CCCCCCcEEEEecCC
Q 021629 113 LGRFIKERK---QRDPEVEVTVATKFA 136 (310)
Q Consensus 113 lG~al~~~~---~~~~R~~~~I~tK~~ 136 (310)
..+++.+.. .--.+-.|.++.-+.
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeeec
Confidence 444433221 000256788888874
No 64
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.23 E-value=80 Score=30.66 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
+++..+.+..+++.|++.|=.-- |.... ...+.+ +++++.- -+++.|..=.. ..++.+...+.
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~----~d~~~v-~avRe~v----G~~~~L~vDaN---~~w~~~~A~~~--- 259 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKV--GADLE----DDIRRC-RLAREVI----GPDNKLMIDAN---QRWDVPEAIEW--- 259 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC--CCCHH----HHHHHH-HHHHHhc----CCCCeEEEECC---CCCCHHHHHHH---
Confidence 35555666777788999775321 11000 002223 3444332 13444444332 23555543333
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcC----cccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCcc
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G----~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (310)
+++|. ..++.++..|-.. +-++.+.+|++.- .--..|-|.++.+.+.++++. -..+++|....-.
T Consensus 260 -~~~L~--~~~l~~iEEP~~~---~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~ 328 (415)
T cd03324 260 -VKQLA--EFKPWWIEEPTSP---DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRL 328 (415)
T ss_pred -HHHhh--ccCCCEEECCCCC---CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCcccc
Confidence 23332 3466677776432 2355666666653 334557777788888888654 3477888776654
Q ss_pred ccCccccchhHHHHHcCceEEEcc
Q 021629 230 YRKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
---.+-..+.+.|+++|+.++.++
T Consensus 329 GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 329 GGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcC
Confidence 321122248899999999998874
No 65
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=70.09 E-value=91 Score=28.76 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=93.2
Q ss_pred cceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCc
Q 021629 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVE 128 (310)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~ 128 (310)
.|.||.|.-... . ....+.+...+.+...++ -|++.+|--..|+.-.. ..+-..+-++|+...... ..
T Consensus 71 iiS~GG~~g~~~---~---~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~~--p~ 139 (294)
T cd06543 71 IVSFGGASGTPL---A---TSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKEY--PD 139 (294)
T ss_pred EEEecCCCCCcc---c---cCcccHHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHHC--CC
Confidence 457887763221 1 112234554445555554 59999998766654110 011355667777665332 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEeecCCC---CC-hHHHHHHHHHHHHcCcccEEEeecCCH
Q 021629 129 VTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI---WG-NEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (310)
Q Consensus 129 ~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~pd~---~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~ 202 (310)
+.|+.-+...+...+++.+ .+-+..+..| +|+|-++-+.+-.. .+ -+.++.+.+.++.+=+--+=+.| .
T Consensus 140 l~vs~Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~s---~ 214 (294)
T cd06543 140 LKISFTLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKLS---D 214 (294)
T ss_pred cEEEEecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCCC---H
Confidence 6666666544444544332 2333334444 45666666654332 12 24455555555544222221222 2
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccC--ccccCccccchhHHHHHcCceEEEccccccc
Q 021629 203 KRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
.++-.. -++.|.+=+.... ++.....+ .++++++++||+.+.|-.+...
T Consensus 215 ~~~~~~------ig~TpMiG~nD~~~e~ft~~da~-~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 215 AELWAM------IGVTPMIGVNDVGSEVFTLADAQ-TLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHHHH------ccccccccccCCCCceeeHHHHH-HHHHHHHhCCCCeEeeeeccCC
Confidence 222111 1233433332222 22222222 4999999999999999998764
No 66
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=69.70 E-value=1e+02 Score=29.17 Aligned_cols=155 Identities=8% Similarity=-0.057 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
+.++..+.+..+.+.|++.|=.- .++...- ....+.+ +++++.-. +++-|..-.. ..++.+...+- -
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~G----~~~~l~vDan---~~~~~~~A~~~-~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAVG----PDMRLMHDGA---HWYSRADALRL-G 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHhC----CCCeEEEECC---CCcCHHHHHHH-H
Confidence 45677778888889999988552 1211000 0002222 34443221 3444443332 23444433222 1
Q ss_pred HHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCC-HHHHHHHHHHHHhcCCCeeeeeeccCccc
Q 021629 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (310)
+.|+.+ ++.++..|-. ..+ ++.+.+|+++-.|. ..|=+-++ .+++.++++. -..+++|...+.+-
T Consensus 210 ~~l~~~-----~l~~iEeP~~--~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~G 276 (368)
T cd03329 210 RALEEL-----GFFWYEDPLR--EAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVG 276 (368)
T ss_pred HHhhhc-----CCCeEeCCCC--chh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccC
Confidence 223333 4555665532 233 47777888875444 23445556 7777777655 24778887766543
Q ss_pred cCccccchhHHHHHcCceEEEcc
Q 021629 231 RKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 231 ~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
.=.+-..+.+.|+++||.++.++
T Consensus 277 Git~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 277 GITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 21111248999999999998754
No 67
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=69.13 E-value=96 Score=28.90 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=52.9
Q ss_pred cceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecC----CHHH-HHHHHHHHHhcCCCeeeeeeccC-ccccCcc
Q 021629 163 VELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKR-LRNAYEKLKKRGIPLASNQVNYS-LIYRKPE 234 (310)
Q Consensus 163 iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~----~~~~-l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~ 234 (310)
|.-+.+-.-|+ .+...+.+.++.+++-|.|..|.+.+- ++.. -.++++.++..+.. ..+-++.| +-.-..+
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 34455665555 345678888888888888776666441 1221 12333333333322 23333333 1000111
Q ss_pred ccchhHHHHHcCceEEEcccccccc
Q 021629 235 ENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 235 ~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
-...++.+++.||.+...+++..|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 1246778888999999999888774
No 68
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=69.02 E-value=53 Score=31.42 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=64.3
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHc-Cc---ccEEEee--cCCHHHHHHHHHHHHhc----CCCeeeee
Q 021629 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKR----GIPLASNQ 223 (310)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~L~~~-G~---ir~iGvS--~~~~~~l~~~~~~~~~~----~~~~~~~q 223 (310)
+.||.|+. ++.+++++++.+..++ |+ +-|+=+. |.+.++..++.+.++.. +++..+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 78998875 4678999999887644 42 2222222 66788888888776532 11678999
Q ss_pred eccCccccCccc-------cchhHHHHHcCceEEEcccccccc
Q 021629 224 VNYSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 224 ~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
++||+......+ ..+.+..+++||.+......+..+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 999997543211 136777889999999988876543
No 69
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=68.98 E-value=24 Score=31.57 Aligned_cols=118 Identities=9% Similarity=-0.059 Sum_probs=67.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCCHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 203 (310)
++++.+.-... ..++.+.-.+..+-..+.+++++|-+=.+-.+.. .++.+++++-+.|+++|-+-.- -++-++-
T Consensus 60 ~~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v 135 (247)
T PF05690_consen 60 RSGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-YCTDDPV 135 (247)
T ss_dssp CCTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-EE-S-HH
T ss_pred ccCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-cCCCCHH
Confidence 35555444433 3678888888888888999999888776666654 3578999999999999965432 2333444
Q ss_pred HHHHHHHHHHhcCCCeeeeeeccCccccCcc--c-cchhHHHHHcCceEEEcc
Q 021629 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPE--E-NGVKAACDELGITLIAYC 253 (310)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~-~~~l~~~~~~gi~v~a~~ 253 (310)
..+++.+. ...+++.--+|+-.... . ..+--.+++.+|.||.=.
T Consensus 136 ~akrL~d~------GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 136 LAKRLEDA------GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp HHHHHHHT------T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred HHHHHHHC------CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 44444332 45555555555543211 0 024445666788888744
No 70
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=68.80 E-value=1e+02 Score=29.01 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCC------------CCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCC
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRA------------SFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP 139 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~------------s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~ 139 (310)
++.+.-.++.+.|-+.|+-+|=|-..+..-. .++-.+...+|-. +.+.. +.++++|=+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~-iA~~~-----kPiIlSTGm---- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKY-IAKKG-----KPIILSTGM---- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHH-HHhcC-----CCEEEEccc----
Confidence 4457778888999999999887654432100 0000012333322 22222 578888766
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC--ChHHH-HHHHHHHHHcCcccEEEeecCCHHHHHHHHHH
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGF-IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~--~~~~~-~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (310)
.+-+.+.++++...++-+- |+.+||-...+ +.+++ +..|..|++.= -.-||+|.|+...+.-+..+
T Consensus 157 --a~~~ei~~av~~~r~~g~~---~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 --ATIEEIEEAVAILRENGNP---DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred --ccHHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 4567788888776666543 99999986653 34432 44444554443 45699999988766555444
No 71
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=68.42 E-value=1e+02 Score=28.70 Aligned_cols=135 Identities=19% Similarity=0.087 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
.+.++..++++...+. ||+.+--+. |... -.+...+.+.++........+.+-|.|+... ..+..+...
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl----~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~e 188 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPL----VLSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTPA 188 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcc----cCCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCHH
Confidence 3557777888766544 887543211 1110 0112233333332221101234677787632 223334444
Q ss_pred HHHHHHhhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCcccEE------EeecCCHHHHHHHHHHHHhcCCCe
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAV------GVSNYSEKRLRNAYEKLKKRGIPL 219 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G~ir~i------GvS~~~~~~l~~~~~~~~~~~~~~ 219 (310)
+-+.|+..|.. ..+.+|.... .-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+.+...++.+
T Consensus 189 ll~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~p 261 (321)
T TIGR03822 189 LIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKP 261 (321)
T ss_pred HHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCee
Confidence 55566666632 3577887544 2257899999999999952211 33 577888888887776666543
No 72
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=67.59 E-value=63 Score=30.64 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=60.2
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcC--c--ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~L~~~G--~--ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
+-||.++. .+.+++++++.+..+.+ + |+++=+. |.+.+.+.++.+.++.. +..++-++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 56888765 23577888887776654 2 3344444 55678888888877643 4577889999
Q ss_pred ccccC----cccc---chhHHHHHcCceEEEcccccc
Q 021629 228 LIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 228 ~~~~~----~~~~---~~l~~~~~~gi~v~a~~pl~~ 257 (310)
++... +.+. .+.+..+++||.+....+.+.
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 87532 1111 356778889999999987754
No 73
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=67.56 E-value=23 Score=33.42 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=22.9
Q ss_pred eeeeeccCccccCcccc---chhHHHHHcCceEEEccccc
Q 021629 220 ASNQVNYSLIYRKPEEN---GVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 220 ~~~q~~~n~~~~~~~~~---~~l~~~~~~gi~v~a~~pl~ 256 (310)
+.....||+.+....++ ++.+.|+++||.+-.|-...
T Consensus 122 ~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 122 PSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp --TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 34455677666544332 58899999999998876654
No 74
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.18 E-value=29 Score=29.93 Aligned_cols=149 Identities=13% Similarity=-0.002 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
+++++.++++.+++.|++..|. | ++++..++...+..-.++++++.-=. ...+.++..++
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~iG~~w~~gei~va~~~------~a~~~~~~~l~ 69 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIEL---I-----------EKGLMAGMGVVGKLFEDGELFLPHVM------MSADAMLAGIK 69 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHcCCCccHHHHH------HHHHHHHHHHH
Confidence 5689999999999999876653 3 44455555543311112344432111 22344555555
Q ss_pred HHHHhhCCC----ccceEEeecC-CCCChHHHHHHHHHHHHcCc-ccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 153 DSLFRLGLS----SVELYQLHWA-GIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 153 ~sL~~L~~d----~iDl~~lH~p-d~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
.....+..+ .---+++--+ ...-.-...=.-.-|+..|. |.++|... +.+.+.+.+.. .+|+++.+.+
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~-----~~pd~v~lS~ 143 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK-----EKPLMLTGSA 143 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH-----cCCCEEEEcc
Confidence 555555421 1111222221 11111122222234566776 77788544 55666666444 4677777777
Q ss_pred CccccCccccchhHHHHHcCc
Q 021629 227 SLIYRKPEENGVKAACDELGI 247 (310)
Q Consensus 227 n~~~~~~~~~~~l~~~~~~gi 247 (310)
.+......-..+++.+++.|+
T Consensus 144 ~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 144 LMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred ccccCHHHHHHHHHHHHHcCC
Confidence 655543333357888888854
No 75
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=66.79 E-value=91 Score=29.10 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 205 (310)
++.+.++.|....+| ...+.+.+++..+.+|. ++.+ ..|...+.+...+.++.+..+| +..|-++..+...+
T Consensus 23 ~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 578889999854222 56788899999999984 4543 3444445566678889998876 88888988887777
Q ss_pred HHHHHHHHhcCCCeeee
Q 021629 206 RNAYEKLKKRGIPLASN 222 (310)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (310)
...++.+...++|+..+
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 77777777777765544
No 76
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=66.17 E-value=14 Score=33.66 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=61.0
Q ss_pred HhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeec---CCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 156 ~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
++...+..|++.+..|--.. ..+ +..++.... .|=|+. +....++.+++..+..+++..++-+.||+.+.
T Consensus 157 kk~a~E~~~~~IIDsaaG~g-CpV---i~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s- 229 (284)
T COG1149 157 KKHAKELADLLIIDSAAGTG-CPV---IASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS- 229 (284)
T ss_pred HHhhhhhcceeEEecCCCCC-ChH---HHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch-
Confidence 33333337888888864311 112 223343443 333332 34466777777788888999999999977664
Q ss_pred ccccchhHHHHHcCceEEEccccccc
Q 021629 233 PEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
++.++|++.|+.++.--|+..-
T Consensus 230 ----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 230 ----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred ----HHHHHHHHcCCCeeEECCcchh
Confidence 3899999999999999998754
No 77
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=65.75 E-value=57 Score=28.87 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHHHHhcCCCeeeeeeccCccc-cCccccchhHHHHHcCceEEEcc
Q 021629 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY-RKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
.++..+.|..|+ +..|..... +..|...+-..|++.+++. |.|+. ++++ +++...-+.|..++.-+
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~------~~PLWg~d~~--ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV------YAPLWGRDPE--ELLEEMVEAGFEAIIVA 142 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE------eecccCCCHH--HHHHHHHHcCCeEEEEE
Confidence 456666677766 555555443 4566666666677766532 33444 4444 58888888899888888
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021629 254 PIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (310)
Q Consensus 254 pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (310)
.-+.|+--. -.++.++. +.++.|+.++++||+.|+
T Consensus 143 Vsa~gL~~~----------~lGr~i~~-------~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 143 VSAEGLDES----------WLGRRIDR-------EFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EeccCCChH----------HhCCccCH-------HHHHHHHHHHHhcCCCcc
Confidence 888775210 01122322 233488899999999875
No 78
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.69 E-value=76 Score=30.43 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=64.9
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHH-HcCc---ccEEEee--cCCHHHHHHHHHHHHhcC-CCeeeeeec
Q 021629 165 LYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPLASNQVN 225 (310)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~L~-~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~-~~~~~~q~~ 225 (310)
.+-||.++. ++.+++++++.+.. +.|+ |.++=+. |.+.++++++.+.++... .+..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 478898875 24688999987776 4464 5555555 456777777777765431 256889999
Q ss_pred cCccccCcccc-------chhHHHHHcCceEEEccccccc
Q 021629 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 226 ~n~~~~~~~~~-------~~l~~~~~~gi~v~a~~pl~~G 258 (310)
||++.....+. .+.+..+++||.+......+..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 99965422111 3677788999999998877643
No 79
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.41 E-value=1.2e+02 Score=28.50 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=54.5
Q ss_pred ceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHH
Q 021629 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (310)
Q Consensus 164 Dl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~ 242 (310)
++.+|..|-+ .+-++.+.+|+++..|. ..|-+-++.+.+.++++. -.++++|+...-+-.=.+-..+.+.|
T Consensus 215 ~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a 286 (365)
T cd03318 215 GVELIEQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIA 286 (365)
T ss_pred CcceeeCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHH
Confidence 4556666643 23467778888776655 667777788888888654 23667777655432111112488999
Q ss_pred HHcCceEEEccccc
Q 021629 243 DELGITLIAYCPIA 256 (310)
Q Consensus 243 ~~~gi~v~a~~pl~ 256 (310)
+++||.++..+-+.
T Consensus 287 ~~~gi~~~~~~~~~ 300 (365)
T cd03318 287 EAAGIALYGGTMLE 300 (365)
T ss_pred HHcCCceeecCcch
Confidence 99999998754333
No 80
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=64.67 E-value=2.4e+02 Score=31.58 Aligned_cols=124 Identities=7% Similarity=0.018 Sum_probs=72.5
Q ss_pred hhCCCccceEEeecCCC--CChHHHHHHHHHHHHc-Ccc--cEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCcccc
Q 021629 157 RLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ-GLV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (310)
Q Consensus 157 ~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~-G~i--r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (310)
.-|-+.||+- ++. .+.++.+..+..+.+. -.+ --|-+-+.+++.++.+++.+. .++.+|-+..--.+.
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~---G~~IINSIs~~~~~~ 467 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ---GKGIVNSISLKEGEE 467 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC---CCCEEEeCCCCCCCc
Confidence 3478999984 343 3444445444444432 111 337888889999999976632 345565443322211
Q ss_pred CccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHH-hcCCCcccccc
Q 021629 232 KPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE-NYSKTSTQSLY 309 (310)
Q Consensus 232 ~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~-~~g~s~~qvAl 309 (310)
... .+++.|+++|..++.+.--..|. +...++-.+..+++-+++. ++|++|..+.+
T Consensus 468 ~~~--~~~~l~~kyga~vV~m~~de~G~--------------------~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~ 524 (1229)
T PRK09490 468 KFI--EHARLVRRYGAAVVVMAFDEQGQ--------------------ADTRERKIEICKRAYDILTEEVGFPPEDIIF 524 (1229)
T ss_pred cHH--HHHHHHHHhCCCEEEEecCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 111 48999999999999975433331 1112334455556666665 59999877643
No 81
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=64.51 E-value=30 Score=30.56 Aligned_cols=118 Identities=8% Similarity=-0.025 Sum_probs=61.0
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCC-CCCCCHHHH
Q 021629 69 WDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGRQSV 147 (310)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~-~~~~~~~~i 147 (310)
.+..+.|++.++++.|.+.|++-+=..++|-.|+- .+++..+-+.+....... ++--|--|+-+. .-..+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y---~n~~~~v~~~~~~ln~~~--~~~aidl~v~pGQEIrIt~~vl 88 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRY---ENPIEKVKEKANQLNEIL--KKEAIDLKVLPGQEIRITGDVL 88 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCcc---CChHHHHHHHHHHHHHHH--HhhcCCceeccCceEEEchHHH
Confidence 34456799999999999999998777777766543 234555555444332110 111122222110 001122222
Q ss_pred HHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc
Q 021629 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir 193 (310)
..--+..+-.++ |. +-+++.+|.......+-+.|-+|.-.|-|-
T Consensus 89 ~~l~~g~I~tin-ds-kYlLIEF~~~~v~~ya~~lf~elq~kGi~P 132 (254)
T COG4464 89 DDLDKGIILTIN-DS-KYLLIEFPMNHVPRYADQLFFELQSKGIIP 132 (254)
T ss_pred HHHhcCcccccc-cc-ceEEEEccCCcchhhHHHHHHHHHHCCcee
Confidence 222222222233 22 556777766555666666666677766544
No 82
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=64.31 E-value=1.4e+02 Score=28.73 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=61.6
Q ss_pred ECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCC
Q 021629 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (310)
Q Consensus 93 DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd 172 (310)
+..-.||. |+-|-++|++...+.+.+=++|.|-+...-.+.|.+.+.+.+++ ++ -+.++.+|.|.
T Consensus 63 E~d~VfGg---------~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~---~~---~~~vi~v~t~g 127 (410)
T cd01968 63 EKDVIFGG---------EKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASE---KF---GIPVIPVHSPG 127 (410)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHH---hh---CCCEEEEECCC
Confidence 34445776 77777877766543334567777776432123344444444332 22 35788999887
Q ss_pred CCC-----hHHHHHHHHHHH---------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee
Q 021629 173 IWG-----NEGFIDGLGDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 173 ~~~-----~~~~~~~L~~L~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
... .+.++++|-+.. +.+.|.-||-.++. ..+.++.+.++..|+++.+
T Consensus 128 f~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 128 FVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred cccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 622 334454544332 14678888855443 2344555556666665443
No 83
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=64.19 E-value=21 Score=30.21 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCCCcc----ceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCC--Cee
Q 021629 147 VLAALKDSLFRLGLSSV----ELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI--PLA 220 (310)
Q Consensus 147 i~~~l~~sL~~L~~d~i----Dl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~--~~~ 220 (310)
.+..++..++.+|.+.- +.+.-.+.......++.+.|+.|++.| ++-.-+||.+.+.+...++. .++ .|+
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~---~gl~~~fd 136 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH---AGLDDPFD 136 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH---CCChhhhh
Confidence 34556666777766421 111111111134567888899999988 55566888887777766443 333 244
Q ss_pred eeeeccCccccCccccchhHHHHHcCce
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGIT 248 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (310)
.+-..-..-...+...-+...|++.|+.
T Consensus 137 ~i~~s~~~~~~KP~~~~~~~~~~~~~~~ 164 (198)
T TIGR01428 137 AVLSADAVRAYKPAPQVYQLALEALGVP 164 (198)
T ss_pred eeEehhhcCCCCCCHHHHHHHHHHhCCC
Confidence 3322222222233322355666666653
No 84
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=64.12 E-value=30 Score=30.30 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=55.7
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHH
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (310)
.++.++..|-+.+ -++.+.+|.+...+. ..+-|-++.+.+.++++. -.++++|+..+.+-.-.+-..+.+.
T Consensus 120 ~~i~~iEeP~~~~---d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCAPD---DLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCCcc---CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 4667777664322 356677777777655 445556677777666443 2477777766554321111248899
Q ss_pred HHHcCceEEEccccccc
Q 021629 242 CDELGITLIAYCPIAQG 258 (310)
Q Consensus 242 ~~~~gi~v~a~~pl~~G 258 (310)
|+++|+.++..+.+..+
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999998776544
No 85
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=64.10 E-value=1.3e+02 Score=28.39 Aligned_cols=86 Identities=9% Similarity=-0.082 Sum_probs=55.9
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHH
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (310)
.++.++..|-+. +-++.+.+|++...+. ..|-|-++.+.+.++++. ...+++|+...-+-.-.+-..+...
T Consensus 213 ~~~~~iEeP~~~---~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~l 284 (368)
T TIGR02534 213 AGVELIEQPTPA---ENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAI 284 (368)
T ss_pred cChhheECCCCc---ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHH
Confidence 355666666432 2366777788776655 778888888888887654 2467777766543211111248889
Q ss_pred HHHcCceEEEccccc
Q 021629 242 CDELGITLIAYCPIA 256 (310)
Q Consensus 242 ~~~~gi~v~a~~pl~ 256 (310)
|+.+|+.++..+.+.
T Consensus 285 A~~~gi~~~~~~~~~ 299 (368)
T TIGR02534 285 AEAAGIALYGGTMLE 299 (368)
T ss_pred HHHcCCceeeecchh
Confidence 999999998765443
No 86
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=63.42 E-value=1.1e+02 Score=27.45 Aligned_cols=106 Identities=9% Similarity=-0.122 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCC
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 217 (310)
..++.+.-.+-.+-..+.+++++|-|=.+..+.. .++.+++++-++|.++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4678888778888888889999998888887765 46899999999999999765 33566666666666443
Q ss_pred CeeeeeeccCccccCc--cccchhHHHHH-cCceEEEc
Q 021629 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (310)
Q Consensus 218 ~~~~~q~~~n~~~~~~--~~~~~l~~~~~-~gi~v~a~ 252 (310)
.++++..--.++.... ...+++...++ .++.|++=
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 4555533223333211 01135555555 47888763
No 87
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=63.35 E-value=1e+02 Score=26.91 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECC-cCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTA-EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
.+.++..++++.-.+.||..|+.. +..+. ...+.+-+..+... . ..+.+.+ ....+.++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-------~~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~ 72 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-------DDFEQVRRLREALP----N--ARLQALC-----RANEEDIERA 72 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-------HHHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-------HHHHHhhhhhhhhc----c--cccceee-----eehHHHHHHH
Confidence 355888888988889999999998 22221 11344545444433 1 2233322 2345556666
Q ss_pred HHHHHHhhCCCccceEEeecCCC------CC----hHHHHHHHHHHHHcCcccEEEe---ecCCHHHHHHHHHHHHhcCC
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~------~~----~~~~~~~L~~L~~~G~ir~iGv---S~~~~~~l~~~~~~~~~~~~ 217 (310)
++.. +..+.+.+.++.--++-. .. .+.+.+.++.+++.|..-.+++ +.++++.+.++.+.+...+.
T Consensus 73 ~~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 73 VEAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred HHhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 6543 467777766554322200 11 3445555666778887777776 34466777766666554443
Q ss_pred CeeeeeeccCccccCccc-cchhHHHHHc----CceEEEccccccc
Q 021629 218 PLASNQVNYSLIYRKPEE-NGVKAACDEL----GITLIAYCPIAQG 258 (310)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~-~~~l~~~~~~----gi~v~a~~pl~~G 258 (310)
+.+.+.=+.....|++ .+++...++. .|++..+.-++.+
T Consensus 152 --~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 152 --DIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp --SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred --eEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccch
Confidence 3332221222222221 1355555542 3556666655543
No 88
>PLN02681 proline dehydrogenase
Probab=63.31 E-value=1.6e+02 Score=29.06 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHCCCC-eEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
+...++++.|.+.|++ +||.=+.|=...- ..+.-+..+.+.....+.-|+++--.- -..+.+.+...++.
T Consensus 220 ~rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~ 290 (455)
T PLN02681 220 ERLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHH
Confidence 3466788999999998 5675443322111 333334444443100023355554442 13567777777776
Q ss_pred HHHh---hCC-----Cccce-----EEeecCCC-C-ChH---H-HHHHHHHHHH---cCcccEEEeecCCHHHHHHHHHH
Q 021629 154 SLFR---LGL-----SSVEL-----YQLHWAGI-W-GNE---G-FIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 154 sL~~---L~~-----d~iDl-----~~lH~pd~-~-~~~---~-~~~~L~~L~~---~G~ir~iGvS~~~~~~l~~~~~~ 211 (310)
..+. +|+ -|+|- -.+.||++ + ..+ . .-+.++.+.+ .|. .++.+.+||.+.+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 6543 222 23332 12223333 1 111 2 2233344443 244 4789999999999999988
Q ss_pred HHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccc
Q 021629 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 257 (310)
....++++.-..++|-.+..-.+ .+.....+.|..|.-|.|+|.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 87777754423334443333222 366667778999999999873
No 89
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=63.19 E-value=1.2e+02 Score=27.63 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
.++.++..++++.+.+.|+..+.-. | |+-.-+..-.+++ +.+++.+ -.++.|+|... . + ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~iv-~~l~~~g----~~~v~i~TNG~-----l----l-~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKIT---G-GEPLLRKDLIEII-RRIKDYG----IKDVSMTTNGI-----L----L-EK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEE---C-cccccccCHHHHH-HHHHhCC----CceEEEEcCch-----H----H-HH
Confidence 3567888899999989999877642 3 3210011112233 2233332 13677777542 1 1 12
Q ss_pred HHHHHHhhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCc----ccEEEeecCCHHHHHHHHHHHHhcCC
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~---------~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~~ 217 (310)
.-..|.+.|++.|- +-++.+++ ...+.+++.++.+++.|. |..+.+.+.+.+++.++++.+...++
T Consensus 100 ~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 23345666665543 33454432 136789999999999984 33455555788899999888877665
Q ss_pred C
Q 021629 218 P 218 (310)
Q Consensus 218 ~ 218 (310)
.
T Consensus 179 ~ 179 (302)
T TIGR02668 179 I 179 (302)
T ss_pred E
Confidence 4
No 90
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=62.68 E-value=80 Score=30.77 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.3
Q ss_pred hhHHHHHcCceEE
Q 021629 238 VKAACDELGITLI 250 (310)
Q Consensus 238 ~l~~~~~~gi~v~ 250 (310)
+...|++.||.++
T Consensus 203 I~~icr~~~v~v~ 215 (428)
T KOG1549|consen 203 IVKICREEGVQVH 215 (428)
T ss_pred HHHHhCcCCcEEE
Confidence 4445555544443
No 91
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.59 E-value=1.3e+02 Score=28.26 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
.++..+.+..+++.|++.|=.--....-.. ..+.+ +++++.. -+++.|..-.. ..++.+...+-++.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----d~~~v-~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~~ 208 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADE-----DLAVV-RSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQA 208 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHh-----HHHHH-HHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHHH
Confidence 355555666667788876532111101000 12333 4455432 14555555443 23555543333322
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCc-ccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
|+.+ ++.++..|-.. +-++.+.+|++.-- =-..|-+.++.+.+..+++. -.++++|+..+-+-.-
T Consensus 209 -l~~~-----~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGi 274 (355)
T cd03321 209 -LDQE-----GLTWIEEPTLQ---HDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGV 274 (355)
T ss_pred -HHcC-----CCCEEECCCCC---cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCH
Confidence 2333 55666666432 23566677776643 23566777888888888654 2477777766654321
Q ss_pred ccccchhHHHHHcCceEEEcc
Q 021629 233 PEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~ 253 (310)
.+-..+.+.|+.+|+.++.+.
T Consensus 275 t~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 275 TGWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 111248999999999987654
No 92
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=61.88 E-value=1.2e+02 Score=27.26 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=23.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCC
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~ 100 (310)
+.+|.+...+.++..++.|++-+=.....|-
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE 43 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGE 43 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 4577899999999999999997765444443
No 93
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=60.43 E-value=33 Score=29.90 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=43.0
Q ss_pred HHhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEee-cCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 155 L~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
+..+|.|++=+++.. +|...+.+.+-+....+ .+.++.+||. |-+++.+.++.+. ..++++|++-
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 456999998886433 23334444443333333 3568899996 7788888888665 5789999875
No 94
>PRK09875 putative hydrolase; Provisional
Probab=60.04 E-value=1.4e+02 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=31.4
Q ss_pred HcCcccEEEeec--CCHHH---HHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCc
Q 021629 188 EQGLVKAVGVSN--YSEKR---LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (310)
Q Consensus 188 ~~G~ir~iGvS~--~~~~~---l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi 247 (310)
+.|.|..||+|. .++.. ++.+.......+.++.+. ... .+... +.++.+++.|+
T Consensus 119 kaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~H-t~~---~~~g~--e~l~il~e~Gv 177 (292)
T PRK09875 119 KAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTH-TSF---STMGL--EQLALLQAHGV 177 (292)
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEc-CCC---ccchH--HHHHHHHHcCc
Confidence 568888999987 34433 334444445566665553 221 11111 47888999988
No 95
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.78 E-value=1.6e+02 Score=27.80 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
++++..+-+..+++.|++.|=.-- |.... ...+.+ +++++.-. +++-|..=.. ..++.+...+-+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~----~d~~~v-~~vRe~~G----~~~~l~vDaN---~~~~~~~A~~~~- 202 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPR----RDPDRV-AAARRAIG----PDAELFVDAN---GAYSRKQALALA- 202 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHH----HHHHHH-HHHHHHcC----CCCeEEEECC---CCCCHHHHHHHH-
Confidence 345555666777789999774321 21100 012333 44444321 3343433332 234554432222
Q ss_pred HHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHc--C-cccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCcc
Q 021629 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--G-LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~--G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (310)
+.|+. +++.++..|-+ .+-++.+.+|+++ - .=-..|-|.++.+.+.++++. -..+++|....-+
T Consensus 203 ~~l~~-----~~~~~~EeP~~---~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~ 269 (352)
T cd03328 203 RAFAD-----EGVTWFEEPVS---SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRC 269 (352)
T ss_pred HHHHH-----hCcchhhCCCC---hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCcccc
Confidence 22333 35555555532 2346777778876 2 223567788888988888664 2477888777654
Q ss_pred ccCccccchhHHHHHcCceEEEcc
Q 021629 230 YRKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
--=.+-..+.+.|+.+|+.++.++
T Consensus 270 GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 270 GGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CCHHHHHHHHHHHHHcCCeeccCc
Confidence 311111248999999999999875
No 96
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=59.76 E-value=57 Score=29.15 Aligned_cols=96 Identities=10% Similarity=0.165 Sum_probs=51.2
Q ss_pred EEeecCCHH--HHHHHHHHHHhcCCCeeeeeeccCc---cccC---ccccchhHHHHHcCceEEEcccccccccCCCCCC
Q 021629 195 VGVSNYSEK--RLRNAYEKLKKRGIPLASNQVNYSL---IYRK---PEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (310)
Q Consensus 195 iGvS~~~~~--~l~~~~~~~~~~~~~~~~~q~~~n~---~~~~---~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~ 266 (310)
+|+|++... .+++.++.+++.| ++.+++..+. +... ..-..+.+.++++||.+.++.|...++ .-++.
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G--~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~-~~~~~- 78 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELG--YDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGY-PYNMM- 78 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcC--CCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCc-Ccccc-
Confidence 566665433 3555555555544 5555542210 1111 011247888999999999988765432 00000
Q ss_pred CCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 267 QNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
.-.+...+...+.+...-++|++.|.+.
T Consensus 79 ----------~~~~~~r~~~~~~~~~~i~~a~~lGa~~ 106 (275)
T PRK09856 79 ----------LGDEHMRRESLDMIKLAMDMAKEMNAGY 106 (275)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 0012233445556667778888888754
No 97
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.15 E-value=52 Score=32.04 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=53.6
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC-----ccceEEeecCCCCC-----hHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG-----NEGF 179 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d-----~iDl~~lH~pd~~~-----~~~~ 179 (310)
|+-|-++|++...+.+.+=++|.|-+-. +-+-..++...+++.-+ .+.++.++-|.... .+.+
T Consensus 70 ~~~L~~ai~~~~~~~~p~~I~v~ttC~~-------~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a 142 (435)
T cd01974 70 QNNLIDGLKNAYAVYKPDMIAVSTTCMA-------EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNM 142 (435)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCchH-------hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHH
Confidence 7777788876654333455677766632 22223333333333221 37889998887632 3344
Q ss_pred HHHHH-HHH-------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 180 IDGLG-DAV-------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 180 ~~~L~-~L~-------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+++|- .+. +.++|.-||-.+...+.+.++.+.++..|+.+.
T Consensus 143 ~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 143 VKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred HHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 44443 222 234466665333222225555555666666653
No 98
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.77 E-value=73 Score=27.87 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
++.+.. ..+-+.|.++|+++|++- +|.. ....+.++.+.+.... .+..+++....+.++.+.+.+...+....
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 444444 445556999999998887 3321 1233444445444455 55567777788888887765566665544
Q ss_pred eeeeccCccccC------c-----cccchhHHHHHcCceE
Q 021629 221 SNQVNYSLIYRK------P-----EENGVKAACDELGITL 249 (310)
Q Consensus 221 ~~q~~~n~~~~~------~-----~~~~~l~~~~~~gi~v 249 (310)
.+-...|..... . .-...+.+++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444444441110 0 0014788899999998
No 99
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=58.57 E-value=1.2e+02 Score=28.14 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=65.5
Q ss_pred HHHHHhhCCCccceEEeecCCC------CChHHHHHHHHHHHHcCccc-EEEeecC---CHHHHHHHHHHHHhcCCCeee
Q 021629 152 KDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~------~~~~~~~~~L~~L~~~G~ir-~iGvS~~---~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+...+++|. |++.||-... .+.+|..+.|+++.+.=+|- -||=|.. +++.++++.+.++-. ++-.
T Consensus 157 rk~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclL 231 (403)
T COG2069 157 RKCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLL 231 (403)
T ss_pred HHHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEe
Confidence 344566774 8888886432 56889999999988886654 4566654 678888888876522 2222
Q ss_pred eeeccCccccCccccchhHHHHHcCceEEEccccccc
Q 021629 222 NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 222 ~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
-..+.++-+ + .+.+.+.++|=.|++|+++.-.
T Consensus 232 aSanldlDy---~--~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 232 ASANLDLDY---E--RIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred eccccccCH---H--HHHHHHHhcCceEEEeeccChH
Confidence 222332221 2 4899999999999999998643
No 100
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=57.92 E-value=1.1e+02 Score=30.74 Aligned_cols=105 Identities=8% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
++.|-+.|+....+.+.+=++|.|-+..---+-+.+.+.+.++ +. + -++++.+|.|.... .+.+++.|-
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~---~~--~-~~pVi~v~t~~f~g~~~~g~~~~l~~lv 143 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRAS---IE--S-DSDVILADVNHYRVNELQAADRTLEQIV 143 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhh---cc--c-CCCEEEeCCCCCcccHHHHHHHHHHHHH
Confidence 5666666665433322455666665532111233333333332 12 2 36899999987632 122333322
Q ss_pred H-H--------------HHcCcccEEEeecC---CHHHHHHHHHHHHhcCCCee
Q 021629 185 D-A--------------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 185 ~-L--------------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~ 220 (310)
+ + +..++|.-||.++. +...+.++.+.++..|+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn 197 (513)
T CHL00076 144 RFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEIN 197 (513)
T ss_pred HHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEE
Confidence 1 1 12366889987742 23455666665666665543
No 101
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=57.78 E-value=1.3e+02 Score=26.40 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (310)
....+++..|.+.|+..|=.+++...... .+. ..+.+++ =+++...-+. ..+.+.+..-++
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~~~~-- 76 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRGLVG-- 76 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHHHHH--
Confidence 45678999999999998877777532100 011 1122211 1344444332 233444433333
Q ss_pred HHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC---CHHHHHHHHHHHHhcCCCeeeeeeccCcccc
Q 021629 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (310)
+. .+.+|++.+| |.. +++. ..+.+.+.|.-||--.. ....-+.+++.+...++.+. ++++.+..
T Consensus 77 --~~-~~~~d~v~v~-~~~---~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lE---In~s~~~~ 143 (237)
T PRK00912 77 --KF-RKKVDVLAVH-GGD---EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIE---FNLRDILK 143 (237)
T ss_pred --hc-cCcccEEEEe-CCC---HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEE---EEchHhhh
Confidence 32 1356888888 221 2222 35777888888876532 11122344455666665444 44543321
Q ss_pred Cc-c-------c-cchhHHHHHcCceEEE
Q 021629 232 KP-E-------E-NGVKAACDELGITLIA 251 (310)
Q Consensus 232 ~~-~-------~-~~~l~~~~~~gi~v~a 251 (310)
.. . . ..++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11 0 0 1489999999988754
No 102
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.96 E-value=1e+02 Score=29.19 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHHHcC--c--ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~L~~~G--~--ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
.+-||.|+. ++.+++++++.+..+.. + +-++=+. |.+.+++.++.+.++ +++..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 588998764 34688999988865442 2 3334343 667888888887765 35678899999
Q ss_pred CccccCc-----cc--cchhHHHHHcCceEEEccccccc
Q 021629 227 SLIYRKP-----EE--NGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 227 n~~~~~~-----~~--~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
|+..... .+ ..+.+..+++||.+......+..
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~d 326 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGED 326 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 9754321 11 13566788899999998777644
No 103
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=56.05 E-value=1.1e+02 Score=26.93 Aligned_cols=109 Identities=22% Similarity=0.258 Sum_probs=59.6
Q ss_pred HHHHHHHcCcccEEEeec---CCHH--HHHHHHHHHHhcCCCeeeeeeccC-ccccCccc--------cchhHHHHHcCc
Q 021629 182 GLGDAVEQGLVKAVGVSN---YSEK--RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEE--------NGVKAACDELGI 247 (310)
Q Consensus 182 ~L~~L~~~G~ir~iGvS~---~~~~--~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~--------~~~l~~~~~~gi 247 (310)
.++..++.| ...+.+.. +... .+.++.+.++..++.+...+...+ ++...... ...++.|++.|+
T Consensus 20 ~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (274)
T COG1082 20 ILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGA 98 (274)
T ss_pred HHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 334455556 66666663 1111 155555556667777776666665 44443211 027888999998
Q ss_pred eEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 248 TLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 248 ~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
.++...+-... +..... . .....+...+.+.++.++|+++|+..
T Consensus 99 ~~vv~~~g~~~---~~~~~~-~---------~~~~~~~~~~~l~~l~~~a~~~~i~l 142 (274)
T COG1082 99 KVVVVHPGLGA---GADDPD-S---------PEEARERWAEALEELAEIAEELGIGL 142 (274)
T ss_pred CeEEeecccCC---cCCCCC-C---------CcccHHHHHHHHHHHHHHHHHhCCce
Confidence 87765443321 110000 0 00112456677778999999987654
No 104
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=56.02 E-value=92 Score=26.01 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=57.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCcc----ccchhHH
Q 021629 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----ENGVKAA 241 (310)
Q Consensus 166 ~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~----~~~~l~~ 241 (310)
+++..|.....+++++.--+=-++.-|++|=|.+-+.+...++.+..+.. ++..+ +.|+....+.. +.++-+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVv--Vthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVV--VTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEE--EEeecccccCCceecCHHHHHH
Confidence 45556666667778887666667777999988887777777777664321 33444 34444443321 2258888
Q ss_pred HHHcCceEEEccccccc
Q 021629 242 CDELGITLIAYCPIAQG 258 (310)
Q Consensus 242 ~~~~gi~v~a~~pl~~G 258 (310)
.++.|..++.-|---.|
T Consensus 79 L~erGa~v~~~sHalSg 95 (186)
T COG1751 79 LKERGAKVLTQSHALSG 95 (186)
T ss_pred HHHcCceeeeehhhhhc
Confidence 99999999876544333
No 105
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=55.58 E-value=1.9e+02 Score=28.73 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHH----cCcccEEEee--cCCHHHHHHHHHHHHhc
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE----QGLVKAVGVS--NYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~----~G~ir~iGvS--~~~~~~l~~~~~~~~~~ 215 (310)
.+.+.|.+.++. +...|...+-|+.=..|...+.+.+.+.++.+++ .|.++.|+++ ..+.++++++.+.
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lkea---- 189 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEA---- 189 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHc----
Confidence 467888888875 4678876665542223333567777777777775 4677766664 4466777766443
Q ss_pred CC-CeeeeeeccCc-----cccC------ccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhH
Q 021629 216 GI-PLASNQVNYSL-----IYRK------PEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYL 283 (310)
Q Consensus 216 ~~-~~~~~q~~~n~-----~~~~------~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~ 283 (310)
|+ ...++|--||. +++. .++...++.+++.||.-+.. |.|-|= +++.
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~-----G~L~GL----------------ge~~ 248 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI-----GVLFGL----------------YDYK 248 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe-----EEEEcC----------------CCCH
Confidence 44 45666666542 1111 11224788899999874332 333330 1122
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccc
Q 021629 284 RNLQPLLNRIKELGENYSKTSTQSL 308 (310)
Q Consensus 284 ~~~~~~~~~l~~iA~~~g~s~~qvA 308 (310)
......+..++.+-+++|+.|..|.
T Consensus 249 ~E~~~l~~hl~~L~~~~gvgp~tIs 273 (469)
T PRK09613 249 FEVLGLLMHAEHLEERFGVGPHTIS 273 (469)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcccc
Confidence 2334444456667677776554443
No 106
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=55.35 E-value=40 Score=30.99 Aligned_cols=105 Identities=18% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
++.+. +..+-+.|.++|+++|++-..+.|...+ ..+.++.+..+.+...++...+. .+...++.+.+. +....
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 34443 3446666899999999998666665322 23346666666555456666655 477788777554 22221
Q ss_pred eeeeccCcc------ccCccc-----cchhHHHHHcCceEEEc
Q 021629 221 SNQVNYSLI------YRKPEE-----NGVKAACDELGITLIAY 252 (310)
Q Consensus 221 ~~q~~~n~~------~~~~~~-----~~~l~~~~~~gi~v~a~ 252 (310)
.+-...|.. .+..++ ...+++++++|+.+.++
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 111222211 111111 14789999999988643
No 107
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=54.89 E-value=65 Score=28.52 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeee--ccCccccCc--cccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCC
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQV--NYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR 276 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~--~~n~~~~~~--~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~ 276 (310)
++.+++.+ +++.|+.+..+.. +||.++... +-.++.++++..|-..+...|+..|--.|
T Consensus 50 p~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~-------------- 112 (272)
T COG4130 50 PAAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPG-------------- 112 (272)
T ss_pred CHHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCC--------------
Confidence 45566655 5556665444332 344444321 22368999999999999999998753211
Q ss_pred CcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021629 277 IYTAEYLRNLQPLLNRIKELGENYSKT 303 (310)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~iA~~~g~s 303 (310)
.....+.....+.+|+.|-.++|++
T Consensus 113 --~~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 113 --TAVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred --cccchHHHHHHHHHhhHHHHHhCcc
Confidence 1111234556667888888888874
No 108
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=54.29 E-value=1.3e+02 Score=26.89 Aligned_cols=107 Identities=13% Similarity=-0.013 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCC
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 217 (310)
..++.+.-.+..+-..+.+++|+|-+=.|-.++. .+.-+++++-|.|+++|-+-.-= ++-++-..+++.+.
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY-~~dD~v~arrLee~------ 150 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPY-TTDDPVLARRLEEA------ 150 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeec-cCCCHHHHHHHHhc------
Confidence 4678888778888888999999999888877766 46789999999999999654322 22233333333322
Q ss_pred CeeeeeeccCccccC-----ccccchhHHHHHcCceEEEcccc
Q 021629 218 PLASNQVNYSLIYRK-----PEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 218 ~~~~~q~~~n~~~~~-----~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
.+.+++---+|+-.. +. .+.-..++.+|.++.=.-+
T Consensus 151 GcaavMPl~aPIGSg~G~~n~~--~l~iiie~a~VPviVDAGi 191 (262)
T COG2022 151 GCAAVMPLGAPIGSGLGLQNPY--NLEIIIEEADVPVIVDAGI 191 (262)
T ss_pred CceEeccccccccCCcCcCCHH--HHHHHHHhCCCCEEEeCCC
Confidence 344444333333321 11 1334455558888764433
No 109
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=54.22 E-value=76 Score=30.79 Aligned_cols=86 Identities=7% Similarity=-0.065 Sum_probs=58.4
Q ss_pred ceEEeecCCCC-ChHHHHHHHHHHHHc------CcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCcccc
Q 021629 164 ELYQLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN 236 (310)
Q Consensus 164 Dl~~lH~pd~~-~~~~~~~~L~~L~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~ 236 (310)
++ +|..|-+. +.++-++.+.+|++. ..--..+-|.++.+.+.++++. --.+++|+..+-+-.-.+-.
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~ 338 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIA 338 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHH
Confidence 44 77777542 234567888888766 4445566777788888888655 34777777766543222222
Q ss_pred chhHHHHHcCceEEEcccc
Q 021629 237 GVKAACDELGITLIAYCPI 255 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl 255 (310)
.+.++|+++||.++..+..
T Consensus 339 kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 339 RAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHcCCEEEEeCCC
Confidence 5899999999999987655
No 110
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.70 E-value=1.3e+02 Score=28.50 Aligned_cols=102 Identities=21% Similarity=0.148 Sum_probs=63.7
Q ss_pred HHHhhCCCccceEEeecCCC------------CChHHHHHHHHHHHHc-Cc---ccEEEe--ecCCHHHHHHHHHHHHhc
Q 021629 154 SLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~------------~~~~~~~~~L~~L~~~-G~---ir~iGv--S~~~~~~l~~~~~~~~~~ 215 (310)
.|...+...+++ -||.+++ ++.+++++++.+...+ |+ |+++=+ -|.+.+.++++.+.++.
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~- 284 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSR- 284 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhc-
Confidence 344555544444 6777765 2467888888765443 32 333323 25677788888877654
Q ss_pred CCCeeeeeeccCccccCcc----cc---chhHHHHHcCceEEEccccccc
Q 021629 216 GIPLASNQVNYSLIYRKPE----EN---GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~----~~---~~l~~~~~~gi~v~a~~pl~~G 258 (310)
.+..++-++||++...+. +. .+.+..+++||.+......+..
T Consensus 285 -~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~d 333 (354)
T PRK14460 285 -TKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQD 333 (354)
T ss_pred -CCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 346788889998643221 11 3566788889999888777643
No 111
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.72 E-value=95 Score=30.11 Aligned_cols=110 Identities=7% Similarity=0.014 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
|+-|-++|+....+.+.+=++|.|-+...-.+-+-+.+.+.+++-... ...+.++.+|.|+... .+.++++|-
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~--~~~~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPE--LADVPVVYVSTPDFEGSLEDGWAAAVEAII 143 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccc--cCCCeEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 777777777654333345677777764321223333333333222110 0146789999988632 233343332
Q ss_pred -HH--------HHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee
Q 021629 185 -DA--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 185 -~L--------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
.+ +..++|.-||-++.++..+.++.+..+..|+.+.+
T Consensus 144 ~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 144 EALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 22 23466888886666566777777777777766533
No 112
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=52.53 E-value=1.6e+02 Score=25.72 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=70.6
Q ss_pred HHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
+.++...+.||+.+. ++-+.+......+....+|.+++++| +..|-.... +..+-......+...++++. .
T Consensus 46 ~~~~~~A~~lgip~~-~i~~~~~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~------~ 117 (218)
T TIGR03679 46 ELTRLQAEALGIPLV-KIETSGEKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLKVF------A 117 (218)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCeEE------e
Confidence 445666678887532 22222211223456788888888885 665555443 22233333333444443322 2
Q ss_pred ccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021629 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (310)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (310)
|+.....+ +++..+.+.|+..+.-+.-+.|+ ...+. ++.+.. +.++.|.++.+++|++|.
T Consensus 118 PLw~~~~~-el~~~~~~~G~~~~i~~v~~~~l-~~~~l---------G~~~~~-------~~~~~l~~l~~~~~~~~~ 177 (218)
T TIGR03679 118 PLWGRDQE-EYLRELVERGFRFIIVSVSAYGL-DESWL---------GREIDE-------KYIEKLKALNKRYGINPA 177 (218)
T ss_pred ehhcCCHH-HHHHHHHHCCCEEEEEEEecCCC-ChHHC---------CCccCH-------HHHHHHHHHHhhcCcccc
Confidence 33333222 59999999999997766655442 11111 122222 334578888888888764
No 113
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=52.50 E-value=1.3e+02 Score=25.85 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHCCCCeEE
Q 021629 73 KMKAAKAAFDTSLDNGITFFD 93 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~D 93 (310)
|++.+.+++..+++.|+...|
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 568899999999999976544
No 114
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=52.32 E-value=81 Score=28.31 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=29.3
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..+++|++.|+..+...|-... ..............+.++.++|+++|++.
T Consensus 89 ~~i~~A~~lG~~~v~~~~g~~~-----------------~~~~~~~~~~~~~~l~~l~~~a~~~gi~l 139 (279)
T cd00019 89 DEIERCEELGIRLLVFHPGSYL-----------------GQSKEEGLKRVIEALNELIDKAETKGVVI 139 (279)
T ss_pred HHHHHHHHcCCCEEEECCCCCC-----------------CCCHHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 4788888888887765332110 01122334455566666777777777643
No 115
>PLN02591 tryptophan synthase
Probab=52.27 E-value=1.8e+02 Score=26.20 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=9.3
Q ss_pred CccceEEeecCCC
Q 021629 161 SSVELYQLHWAGI 173 (310)
Q Consensus 161 d~iDl~~lH~pd~ 173 (310)
..+|++-|-.|-.
T Consensus 28 ~Gad~iElGiPfS 40 (250)
T PLN02591 28 CGADVIELGVPYS 40 (250)
T ss_pred CCCCEEEECCCCC
Confidence 4578888887754
No 116
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=52.24 E-value=2e+02 Score=26.79 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=55.7
Q ss_pred cceEEeecCCCC--ChHHHHHHHHHHHHcCcccEEEeec----CCHHHHH-HHHHHHHhcCCCeeeeeeccC-ccccCcc
Q 021629 163 VELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLR-NAYEKLKKRGIPLASNQVNYS-LIYRKPE 234 (310)
Q Consensus 163 iDl~~lH~pd~~--~~~~~~~~L~~L~~~G~ir~iGvS~----~~~~~l~-~~~~~~~~~~~~~~~~q~~~n-~~~~~~~ 234 (310)
+.-+.+-.-|+. +.....+.++.|..-..++.+|+.+ ..+..+. ++++.++..+.. .++++.+| +-....+
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~-~~~~~h~dh~~Ei~d~ 221 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQ-TVLVVHINHANEIDAE 221 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCc-EEEEeeCCChHhCcHH
Confidence 444556655552 2333667777777778888888764 4334442 444444433322 22234444 2121222
Q ss_pred ccchhHHHHHcCceEEEcccccccc
Q 021629 235 ENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 235 ~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
-.+.++.+++.||.+...+++..|+
T Consensus 222 ~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 222 VADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHHcCCEEEecceeeCCC
Confidence 2357888899999999999998774
No 117
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=52.03 E-value=1.7e+02 Score=25.89 Aligned_cols=52 Identities=12% Similarity=-0.020 Sum_probs=31.5
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..+++|++.|..++...+ |.... ............+.+.++.++|+++|+..
T Consensus 89 ~~i~~a~~lga~~i~~~~---g~~~~-------------~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l 140 (258)
T PRK09997 89 AAIRYARALGNKKINCLV---GKTPA-------------GFSSEQIHATLVENLRYAANMLMKEDILL 140 (258)
T ss_pred HHHHHHHHhCCCEEEECC---CCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 478999999999775311 11100 01122334555666778888888998753
No 118
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.01 E-value=99 Score=29.36 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=61.5
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcC-c---ccEEEe--ecCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG-L---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~L~~~G-~---ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
+-||.++. .+.++++++++.+.+.+ + |+++=+ -|.+.++++++.+.++. .+..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~--l~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKG--IKCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCcEEEEecC
Confidence 66787764 23588999999887754 2 334433 35566888888877654 34678888999
Q ss_pred ccccCc----ccc---chhHHHHHcCceEEEccccccc
Q 021629 228 LIYRKP----EEN---GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 228 ~~~~~~----~~~---~~l~~~~~~gi~v~a~~pl~~G 258 (310)
++.... ... .+.+.++++||.+......+..
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 876421 111 3566689999999888776643
No 119
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=51.84 E-value=1.7e+02 Score=26.32 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCC--------CCHHHHHHH
Q 021629 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR--------LGRQSVLAA 150 (310)
Q Consensus 79 ~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~--------~~~~~i~~~ 150 (310)
+++++|++.|...|..-..-.. ...+-+.++++. -.+++...-+. +.. .-.+.+.+.
T Consensus 87 ~v~e~al~~G~~iINdisg~~~---------~~~~~~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSD---------DPAMLEVAAEYG-----APLVLMHMRGT-PKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECCCCC-CcccccCCCcccHHHHHHHH
Confidence 3577778888888864433211 123446677664 35666554332 111 012344444
Q ss_pred HHHH---HHhhCCC----ccceEEeecCCC-CChHHHHHHHHHHHHcCcccEEEeecCC
Q 021629 151 LKDS---LFRLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (310)
Q Consensus 151 l~~s---L~~L~~d----~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (310)
+++. +++.|++ ++|-..- +... ...-++++.+..+++.|.=-.+|+||-+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 4443 4455665 4443110 1110 1234678888888888887799999964
No 120
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.73 E-value=2.2e+02 Score=26.98 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=64.3
Q ss_pred CccceEEeecCCC------------CChHHHHHHHHH-HHHcCc---ccEEEee--cCCHHHHHHHHHHHHhcCCCeeee
Q 021629 161 SSVELYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 161 d~iDl~~lH~pd~------------~~~~~~~~~L~~-L~~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~ 222 (310)
+....+-||.++. ++.+++++++.+ +.+.|+ |+++=+. |.+.+.++++.+.++. ++..++
T Consensus 211 ~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~Vn 288 (345)
T PRK14457 211 QFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVN 288 (345)
T ss_pred ceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEE
Confidence 4457799998875 236778877755 556664 5555554 5567888888777653 356788
Q ss_pred eeccCccccCc----ccc---chhHHHHHcCceEEEccccccc
Q 021629 223 QVNYSLIYRKP----EEN---GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 223 q~~~n~~~~~~----~~~---~~l~~~~~~gi~v~a~~pl~~G 258 (310)
-++||++.... .+. .+.+..+++||.+......+..
T Consensus 289 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~d 331 (345)
T PRK14457 289 LIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLD 331 (345)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 89999875422 111 2566677889999887776643
No 121
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=50.61 E-value=85 Score=29.72 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHc-Cc---ccEEEe--ecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccc-------cchhH
Q 021629 174 WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKA 240 (310)
Q Consensus 174 ~~~~~~~~~L~~L~~~-G~---ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~ 240 (310)
++.+++++++.+..+. |+ +-++=+ -|.+.+++.++.+.++ +.++.++-++||+....... ..+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4678888888777543 42 223322 3668888888877654 35678888999986543211 14677
Q ss_pred HHHHcCceEEEccccccc
Q 021629 241 ACDELGITLIAYCPIAQG 258 (310)
Q Consensus 241 ~~~~~gi~v~a~~pl~~G 258 (310)
..+++||.+......+..
T Consensus 301 ~L~~~gi~~tiR~~~G~d 318 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQD 318 (344)
T ss_pred HHHHCCceEEEECCCCCc
Confidence 788899999998887643
No 122
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=50.61 E-value=1.1e+02 Score=27.69 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCC-------CChHHHHHHHHHHHHcCcccEEEeecCC---HHHHHHHHH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYE 210 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-------~~~~~~~~~L~~L~~~G~ir~iGvS~~~---~~~l~~~~~ 210 (310)
.++.+.. ..+-+.|.++|+|+|++-+...... ....+.|+.+.++.+ +..+..+++... .+.+..+
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a-- 91 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPA-- 91 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHH--
Confidence 4555544 4455569999999999877654321 123566666665543 345666665543 2333333
Q ss_pred HHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 211 KLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 211 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
...++...-+....+-+.. . ...+++++++|+.+..
T Consensus 92 --~~~gv~~iri~~~~~~~~~--~-~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 92 --SGSVVDMIRVAFHKHEFDE--A-LPLIKAIKEKGYEVFF 127 (266)
T ss_pred --hcCCcCEEEEecccccHHH--H-HHHHHHHHHCCCeEEE
Confidence 2223322222222222111 1 1367778888876654
No 123
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=50.59 E-value=2.3e+02 Score=27.00 Aligned_cols=138 Identities=13% Similarity=0.122 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
.+.++..++++.+.+.|++.|-- .| |+-.-+..=.+++ +.++.... -..+.|+|-... +.+.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-GEPllr~dl~eli-~~l~~~~g---i~~i~itTNG~l---------L~~~~ 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-GEPTLRKDIEDIC-LQLSSLKG---LKTLAMTTNGIT---------LSRKL 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-CCCcchhhHHHHH-HHHHhcCC---CceEEEeeCcch---------HHHHH
Confidence 56789999999888999987753 23 3110000011222 22333211 124666665421 11222
Q ss_pred HHHHHhhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCcc----cEEEeecCCHHHHHHHHHHHHhcCCC
Q 021629 152 KDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~---------~~~~~~~~~L~~L~~~G~i----r~iGvS~~~~~~l~~~~~~~~~~~~~ 218 (310)
..|+..|++.|- +-|+..++ ...+.+++.++.+++.|.. ..+-+-.++.+++.++++.++..++
T Consensus 153 -~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi- 229 (373)
T PLN02951 153 -PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI- 229 (373)
T ss_pred -HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 234445655432 23344332 2357899999999999852 2333445788899999988877553
Q ss_pred eeeeeeccCccc
Q 021629 219 LASNQVNYSLIY 230 (310)
Q Consensus 219 ~~~~q~~~n~~~ 230 (310)
.+.-++|.++.
T Consensus 230 -~vr~ie~mP~~ 240 (373)
T PLN02951 230 -NVRFIEFMPFD 240 (373)
T ss_pred -eEEEEEcccCC
Confidence 44444555554
No 124
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=50.35 E-value=2e+02 Score=32.00 Aligned_cols=126 Identities=6% Similarity=0.011 Sum_probs=72.4
Q ss_pred hhCCCccceEEeecCCCCChHHHHHHHHHHHH-cCcc--cEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCc
Q 021629 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE-QGLV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (310)
Q Consensus 157 ~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~-~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (310)
.-|-+.||+-.= ....+.++.+..+..+.+ +-.+ --|-+-+++++.++.+++.+. .++.+|-+..--.+...
T Consensus 379 e~GA~iIDVn~~--~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~---G~~IINsIs~~~g~~~~ 453 (1178)
T TIGR02082 379 ENGAQILDINVD--YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQ---GKCIVNSISLKDGEERF 453 (1178)
T ss_pred HCCCCEEEECCC--CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcC---CCCEEEeCCCCCCCccH
Confidence 457889998542 111344444555444444 3222 347888999999999977632 24555544332222121
Q ss_pred cccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHh-cCCCcccccc
Q 021629 234 EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGEN-YSKTSTQSLY 309 (310)
Q Consensus 234 ~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~-~g~s~~qvAl 309 (310)
+ .+++.|+++|..++.+.--..|. | ...++..+..+++-+.+.+ +|+++.+|.+
T Consensus 454 ~--~~~~l~~~yga~vV~m~~de~G~----------p----------~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~ 508 (1178)
T TIGR02082 454 I--ETAKLIKEYGAAVVVMAFDEEGQ----------A----------RTADRKIEICKRAYNILTEKVGFPPEDIIF 508 (1178)
T ss_pred H--HHHHHHHHhCCCEEEEecCCCCC----------C----------CCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 2 48999999999999976433331 0 0111223344556666655 9999887754
No 125
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=49.97 E-value=1.3e+02 Score=29.23 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCCe-EECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEe---------cCCCCCCCCCH
Q 021629 75 KAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT---------KFAALPWRLGR 144 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~-~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~t---------K~~~~~~~~~~ 144 (310)
+.=.+=++.|.+.|-.. .|.+. .|+ -..+-+.+-+. ..+-|.| |-+ ...+.+.
T Consensus 76 ~~E~~K~~~A~~~GADtvMDLSt-ggd---------l~~iR~~il~~------~~vpvGTVPiYqa~~~~~~-~~~~~t~ 138 (420)
T PF01964_consen 76 EEELEKLKIAEKAGADTVMDLST-GGD---------LDEIRRAILEN------SPVPVGTVPIYQAAIRKGG-SIVDMTE 138 (420)
T ss_dssp HHHHHHHHHHHHTT-SEEEE----STT---------HHHHHHHHHHT-------SS-EEE-HHHHHHHHTTT--GGG--H
T ss_pred HHHHHHHHHHHHhCCCEEEEcCC-CCC---------HHHHHHHHHHh------CCCccccchHHHHHHHhCC-ChhhCCH
Confidence 33345578899999764 46542 233 44455544332 2333333 221 1235678
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeee
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (310)
+.+.+.+++..+. =+|.+.+|--- +.+.++.+++++++- |+-+-....+...+. ...
T Consensus 139 d~~~~~ie~qa~~----GVDfmtiH~gi------t~~~~~~~~~~~R~~--giVSRGGs~l~~WM~-----------~n~ 195 (420)
T PF01964_consen 139 DDFFDVIEKQAKD----GVDFMTIHCGI------TRETLERLKKSGRIM--GIVSRGGSILAAWML-----------HNG 195 (420)
T ss_dssp HHHHHHHHHHHHH----T--EEEE-TT--------GGGGGGGT--TSSS------HHHHHHHHHHH-----------HHT
T ss_pred HHHHHHHHHHHHc----CCCEEEEccch------hHHHHHHHhhhcccc--CccccchHHHHHHHH-----------hcC
Confidence 8888888887764 47999999742 456778888888665 444433333332221 122
Q ss_pred ccCccccCccccchhHHHHHcCceEE
Q 021629 225 NYSLIYRKPEENGVKAACDELGITLI 250 (310)
Q Consensus 225 ~~n~~~~~~~~~~~l~~~~~~gi~v~ 250 (310)
.-||++..-+ .+++.|+++++.+-
T Consensus 196 ~ENPly~~fD--~lLeI~k~yDVtLS 219 (420)
T PF01964_consen 196 KENPLYEHFD--RLLEIAKEYDVTLS 219 (420)
T ss_dssp S--HHHHTHH--HHHHHHTTTT-EEE
T ss_pred CcCcHHHhHH--HHHHHHHHhCeeEe
Confidence 3455565443 59999999999984
No 126
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=49.72 E-value=1.3e+02 Score=29.49 Aligned_cols=104 Identities=17% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC------hHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~------~~~~~~~ 182 (310)
|+-|-++|+....+.++ +=++|.+-+...-.+.|.+.+.+.+ -++++ +.++.+|-|+... ...++++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~liGdDi~~v~~~~---~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPTGLIGDDIEAVAKEV---SKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChHHHhccCHHHHHHHH---HHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 77777888766544433 5577777663211122333333332 23333 6899999987632 2223333
Q ss_pred -HHHHH--------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 183 -L~~L~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
++.+. +.++|.-||-.++ ...++++.+.++..|+++.
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEE
Confidence 33443 2467888886665 3345555555666676654
No 127
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=49.23 E-value=2.1e+02 Score=26.22 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEee-cCCCC--C-hHH---HHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhc
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLH-WAGIW--G-NEG---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH-~pd~~--~-~~~---~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 215 (310)
+.+.+.+..++.+ .-|-|.||+---- +|... + .+| +...++.|+++-.+ -|.|-+++++.++++++.
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~---- 109 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKA---- 109 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHc----
Confidence 4455444444443 3467888874332 25432 2 233 55567777755233 489999999999999765
Q ss_pred CCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCC-CcchHhHhhHHHHHHHHH
Q 021629 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR-IYTAEYLRNLQPLLNRIK 294 (310)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~l~ 294 (310)
|.. .+|-+ ..+ . .+ ++++.|+++|.+++.+.- .|. |...... .|. .........+++..
T Consensus 110 Gad-iINDI-~g~-~-d~---~~~~~~a~~~~~vVlmh~--~g~----------p~~~~~~~~y~-dv~~~v~~~l~~~i 169 (282)
T PRK11613 110 GAH-IINDI-RSL-S-EP---GALEAAAETGLPVCLMHM--QGN----------PKTMQEAPKYD-DVFAEVNRYFIEQI 169 (282)
T ss_pred CCC-EEEEC-CCC-C-CH---HHHHHHHHcCCCEEEEcC--CCC----------CCccccCCCcc-cHHHHHHHHHHHHH
Confidence 222 23222 222 1 21 478889999999988743 221 1111001 111 22333444445556
Q ss_pred HHHHhcCCCcccccc
Q 021629 295 ELGENYSKTSTQSLY 309 (310)
Q Consensus 295 ~iA~~~g~s~~qvAl 309 (310)
+.|.+.|++..++.+
T Consensus 170 ~~a~~~GI~~~~Iil 184 (282)
T PRK11613 170 ARCEAAGIAKEKLLL 184 (282)
T ss_pred HHHHHcCCChhhEEE
Confidence 668888888777654
No 128
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=49.11 E-value=1.9e+02 Score=27.54 Aligned_cols=104 Identities=20% Similarity=0.152 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC------hHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~------~~~~~~~L 183 (310)
|+-|-++|++...+.+.+=++|.|-+...-.+-|.+.+.+.++ ++.+ +.++.+|-|.... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~---~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEAS---KELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHH---HhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7777777776543332345677766642112233333333332 2333 7899999886522 44455555
Q ss_pred HHHH---------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 184 ~~L~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
-+.. +.+.|.-||..++. ..+.++.+.++..|+.+.
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIRVN 190 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCEEE
Confidence 4433 23568889987763 344555555666565443
No 129
>PRK00208 thiG thiazole synthase; Reviewed
Probab=49.07 E-value=2e+02 Score=25.91 Aligned_cols=106 Identities=10% Similarity=-0.117 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCC
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 217 (310)
..++.+.-.+-.+-..+.++++.|-|=.|..+.. .++.+++++.++|.++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4678888888888888889999988888877665 46899999999999999765 33566666666666443
Q ss_pred CeeeeeeccCccccCc--cccchhHHHHH-cCceEEEc
Q 021629 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (310)
Q Consensus 218 ~~~~~q~~~n~~~~~~--~~~~~l~~~~~-~gi~v~a~ 252 (310)
.++++..-=.++-... .+.++++..++ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 4555532122332211 11135666666 48888773
No 130
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=48.97 E-value=2.3e+02 Score=26.71 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHcC--c--ccEEEeecC----CHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcC
Q 021629 175 GNEGFIDGLGDAVEQG--L--VKAVGVSNY----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELG 246 (310)
Q Consensus 175 ~~~~~~~~L~~L~~~G--~--ir~iGvS~~----~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~g 246 (310)
+....+..+..+++.| . .-+.|-+.. .++.+.+++.. . ++=+..-+++.. ...+++.+++++
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~l-g-----~~RIGHG~~~~~----dp~ll~~l~~~~ 246 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLL-N-----TKRIGHGFALPK----HPLLMDLVKKKN 246 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHh-C-----CCcCccccccCc----CHHHHHHHHHcC
Confidence 4566667777777776 2 344443331 13445554421 1 111111222221 225999999999
Q ss_pred ceEEEcccc
Q 021629 247 ITLIAYCPI 255 (310)
Q Consensus 247 i~v~a~~pl 255 (310)
|.+-. +|.
T Consensus 247 I~lEv-CPt 254 (345)
T cd01321 247 IAIEV-CPI 254 (345)
T ss_pred CeEEE-Ccc
Confidence 98843 444
No 131
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=48.71 E-value=83 Score=30.32 Aligned_cols=84 Identities=10% Similarity=-0.092 Sum_probs=56.4
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHH
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (310)
.++.+|..|-+. +-++.+.+|++.-.|. ..|-|-++.+.++.+++. -.++++|+...-.-.-.+-..+.+.
T Consensus 232 ~~l~~iEeP~~~---~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTPA---ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCCc---cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 477777776432 2367777788776555 677778888888888654 2477777766543211111248889
Q ss_pred HHHcCceEEEccc
Q 021629 242 CDELGITLIAYCP 254 (310)
Q Consensus 242 ~~~~gi~v~a~~p 254 (310)
|+.+|+.++.++.
T Consensus 304 A~~~gi~~~~h~~ 316 (404)
T PRK15072 304 AALYQVRTGSHGP 316 (404)
T ss_pred HHHcCCceeeccC
Confidence 9999999988654
No 132
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=48.65 E-value=51 Score=32.67 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=66.4
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH----------HHHHHHHhhCCCccceEEeecCCCCChHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA----------ALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~----------~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~ 179 (310)
|.++.-+-+..+.. -+.++||+.-+|..-. --|....- .-.+.-+|+.+.|+|.+. .+.+++
T Consensus 142 eT~~~aark~f~~~-L~G~~~lTaGLGGMgG-AQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldea 213 (545)
T TIGR01228 142 ETFAELARQHFGGS-LKGKWVLTAGLGGMGG-AQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEA 213 (545)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEeCCCcccc-ccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHH
Confidence 55554433433322 1578999988876311 11111110 123445788899998532 468999
Q ss_pred HHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee--eeecc
Q 021629 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (310)
Q Consensus 180 ~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~--~q~~~ 226 (310)
++..++.+++|+..+||+-.--++.+.++.+. ++.|++ .|...
T Consensus 214 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r----~i~pDlvtDQTSa 258 (545)
T TIGR01228 214 LARAEEAKAEGKPISIGLLGNAAEVLPELLKR----GVVPDVVTDQTSA 258 (545)
T ss_pred HHHHHHHHHcCCceEEEeeccHHHHHHHHHHc----CCCCCCcCCCCcc
Confidence 99999999999999999988777777777543 555554 46555
No 133
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=48.55 E-value=30 Score=27.93 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.8
Q ss_pred chhHHHHHcCceEEEcccccc
Q 021629 237 GVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~ 257 (310)
++++.|++.||.+++|-.+..
T Consensus 48 e~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHCCCEEEEEEeeec
Confidence 589999999999999988863
No 134
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=48.52 E-value=1.6e+02 Score=28.03 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=61.5
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcCcccEEEee-------cCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~L~~~G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
+.||.|+. ++.++.+++.+...+... +.|-+= |.+.++.+++.+.++ +++..++-++|
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~ 292 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPY 292 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeec
Confidence 77898874 356788888877765544 444332 556777777766643 35668999999
Q ss_pred CccccCcccc-------chhHHHHHcCceEEEccccccc
Q 021629 227 SLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 227 n~~~~~~~~~-------~~l~~~~~~gi~v~a~~pl~~G 258 (310)
|++.....+. ...+...++||.+....+-+..
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~D 331 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDD 331 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccc
Confidence 9988655222 3566677788999887776544
No 135
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=48.32 E-value=69 Score=31.19 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=50.2
Q ss_pred HHHHHHcCcccEEEeecCCHHHHHHHHHHHHhc---CCCeeeeeeccCccccCccccchhHHHHHcCceEEEccc
Q 021629 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (310)
Q Consensus 183 L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~p 254 (310)
...+-+.|-+..+|....+++++++.+...+.. +-+|-+|-+ .++-++..+ .+.++.|.++||.++.-+.
T Consensus 31 VaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e-~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 31 VVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELE-EGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhH-HHHHHHHHHcCCCEEEecc
Confidence 344567899999999999999999998887763 346666543 333222222 3589999999998876553
No 136
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=48.22 E-value=61 Score=28.26 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=40.8
Q ss_pred HhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEee-cCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 156 ~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
..+|.|++=+++.. .|...+.+.+-+....+ .+.+..+||. +-+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 45899998886422 23323343333333322 3668999987 5577888777655 57899998653
No 137
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=48.06 E-value=88 Score=25.54 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEeecCCC-CChHHHHHHHHHHHHc
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~ 189 (310)
|=-+.|+-|+|. ...+..|++.+.++.+.+. ....|++++..+.. .+..++.+.|.++..+
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 567889999873 5678888888888888763 34689999998765 4556666666655544
No 138
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=48.01 E-value=36 Score=32.89 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccc
Q 021629 178 GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 178 ~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 257 (310)
.+++++.+..++++ ++.+.+++.+.+.++.=.+.|+.|..+-.-.|. +.++..++.+ .++...+=++
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~--------~~~~~~~~~~-R~~giVSRGG 188 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTR--------ETLERLKKSG-RIMGIVSRGG 188 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH--------HHHHHHHhcC-CccCeecCCH
Confidence 45666666654443 566777777776665533445555554332221 3666666543 2222223334
Q ss_pred cccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021629 258 GALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (310)
Q Consensus 258 G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (310)
.+++....... .-+...+-.+.|-+||++|.+|++
T Consensus 189 s~~~~WM~~n~-------------~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 189 SFLAAWMLHNN-------------KENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHcC-------------CcCchHHHHHHHHHHHHHhCeeee
Confidence 44443221110 011223334478889999988754
No 139
>PRK05414 urocanate hydratase; Provisional
Probab=47.91 E-value=55 Score=32.55 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=66.3
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH----------HHHHHHHhhCCCccceEEeecCCCCChHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA----------ALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~----------~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~ 179 (310)
|.++.-+-+..... -+.++||++-+|..-. --|....- .-.+.-+|+.+.|+|.+. .+.+++
T Consensus 151 eT~~~a~rk~f~g~-L~G~~~lTaGLGGMgG-AQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldea 222 (556)
T PRK05414 151 ETFAEAARQHFGGD-LAGRLVLTAGLGGMGG-AQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEA 222 (556)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEecCCcccc-ccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHH
Confidence 55554433433221 2578999998876311 11111100 123445788899998532 468999
Q ss_pred HHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee--eeecc
Q 021629 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (310)
Q Consensus 180 ~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~--~q~~~ 226 (310)
++..++.+++|+..+||+-.--++.+.++.+. ++.|++ .|...
T Consensus 223 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~----~i~pDlvtDQTSa 267 (556)
T PRK05414 223 LALAEEAKAAGEPLSIGLLGNAADVLPELVRR----GIRPDLVTDQTSA 267 (556)
T ss_pred HHHHHHHHHcCCceEEEEeccHHHHHHHHHHc----CCCCCccCcCccc
Confidence 99999999999999999988777777777443 555554 46555
No 140
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=47.67 E-value=1.7e+02 Score=26.51 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 021629 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (310)
Q Consensus 78 ~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (310)
.+.++.|++.|=-.|=.+.+||| =++++.++.... ..+.+..+- .....+.+-+.+...+
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 35677777777666667888888 567788887654 345554444 2244566666667777
Q ss_pred hCCCcc
Q 021629 158 LGLSSV 163 (310)
Q Consensus 158 L~~d~i 163 (310)
.|.+.+
T Consensus 170 ~g~~~i 175 (295)
T PF03279_consen 170 FGIELI 175 (295)
T ss_pred cCCeEe
Confidence 775443
No 141
>PLN02363 phosphoribosylanthranilate isomerase
Probab=47.38 E-value=73 Score=28.79 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=48.6
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEee-cCCHHHHHHHH
Q 021629 132 ATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAY 209 (310)
Q Consensus 132 ~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~ 209 (310)
..|++. -.+.+.++.+. ++|.|++=+++.. .|...+.+.+-+.... .....++.+||. |-+++.+.++.
T Consensus 48 ~VKICG---it~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~ 118 (256)
T PLN02363 48 LVKMCG---ITSARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAA 118 (256)
T ss_pred eEEECC---CCcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHH
Confidence 356653 24455555544 5899998886433 2322344444333333 332246789985 77888888776
Q ss_pred HHHHhcCCCeeeeeecc
Q 021629 210 EKLKKRGIPLASNQVNY 226 (310)
Q Consensus 210 ~~~~~~~~~~~~~q~~~ 226 (310)
+. ..++++|++-
T Consensus 119 ~~-----~~ld~VQLHG 130 (256)
T PLN02363 119 DS-----SDLELVQLHG 130 (256)
T ss_pred Hh-----cCCCEEEECC
Confidence 55 5789999875
No 142
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=47.35 E-value=2.2e+02 Score=27.52 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=50.8
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEeecCCCCC--hHHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGIWG--NEGFIDGLGD 185 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~pd~~~--~~~~~~~L~~ 185 (310)
++-|-++|++...+.+.+=++|.|-+- ++-+-..++...+.++ + -+.++.+|.|.... ....-.+|+.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~-------~~iIGdDi~~v~~~~~~~~-~~~vi~v~t~gf~g~~~~g~~~al~~ 141 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCT-------SSILQEDLQNFVRAAGLSS-KSPVLPLDVNHYRVNELQAADETFEQ 141 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc-------HHHHhhCHHHHHHHhhhcc-CCCeEEecCCCccchHHHHHHHHHHH
Confidence 344445555443222234566666553 2222222333333332 2 25788888887622 1222222222
Q ss_pred HH-----------------HcCcccEEEeecCC---HHHHHHHHHHHHhcCCCeee
Q 021629 186 AV-----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 186 L~-----------------~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~~~~~ 221 (310)
+. ++..|.-||.++.+ ...+.++.+..+..|+.+.+
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 142 LVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred HHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 22 22568888887543 45566666666666665544
No 143
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=47.13 E-value=1.3e+02 Score=27.82 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEeecCCC-----CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCC
Q 021629 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-----~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 218 (310)
.+.+++.|.+.+++.++|++=++..-.-.+ .+..+++++|++..+++.-. + ++-.+...... . -.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl--~--~g 200 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAAL--E--AG 200 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHH--H--TT
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHH--H--CC
Confidence 467889999999999998666665555433 12346889999988876443 2 22222222111 1 23
Q ss_pred eeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
..++...=++....+ ++.+.++++|+.++.
T Consensus 201 ~~fvN~tP~~~a~~P---~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 201 VPFVNGTPSNIADDP---ALVELAEEKGVPIAG 230 (295)
T ss_dssp EEEEE-SSSTTTTSH---HHHHHHHHHTEEEEE
T ss_pred CCeEeccCccccCCH---HHHHHHHHcCCCeec
Confidence 444433333333223 599999999999854
No 144
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.05 E-value=76 Score=27.57 Aligned_cols=74 Identities=28% Similarity=0.348 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeee
Q 021629 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (310)
...+.+.+++.++.+|.+. .++ .+...+.+...+.++.+..+| +..|=++..+...+...++.+...++|...+
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 4568888999999998632 332 333356788889999999888 8888888877766666666667777765553
No 145
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=46.94 E-value=1.2e+02 Score=27.26 Aligned_cols=99 Identities=10% Similarity=0.170 Sum_probs=51.1
Q ss_pred HHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHH-HHHHHcCcccEEEeecC-----CHHHHHHHHHHHHhcCCCeee
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL-GDAVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L-~~L~~~G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+.++..|+-.+ +|||.+-+-|-.. .-++++++.. +-+++-|.--+.| .++ ....+.+.++.|+. ..|++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~--lGf~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDE--LGFEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHH--cCCCE
Confidence 45667777777 6888888877544 2233344433 3344455444444 211 11233344444443 34666
Q ss_pred eeeccCccccCccc-cchhHHHHHcCceEEE
Q 021629 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (310)
Q Consensus 222 ~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a 251 (310)
+.+.=..+.-+.++ ..+++.++++|..+.+
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 65555544443332 2466777777766653
No 146
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=46.93 E-value=65 Score=30.69 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=57.4
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-----ChHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-----~~~~~~~~L~ 184 (310)
|+-|-+++++...+...+=++|.|-+...-.+.|.+.+.+.+ -++.+. .++.+|.+... +.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD~~~v~~~~---~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDDIEAVAREL---QEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTTHHHHHHHH---HHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCCHHHHHHHh---hcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 666667666543322236677777763211123333333333 333443 88888887651 2455666655
Q ss_pred HHH-H------cCcccEEEeecCCHHHHHHHHHHHHhcCCC
Q 021629 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 185 ~L~-~------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 218 (310)
+.. + .+.|.-||.++.....+.++.+.++..|+.
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~ 173 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIE 173 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEE
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCc
Confidence 444 2 367888999988766667777767766654
No 147
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=46.75 E-value=1.6e+02 Score=26.75 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021629 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (310)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (310)
+...+.+.+.+.|..|+=|+..|+.+.+ ....-+++-+.++++.. ..+ +.-|... .=.+.+....-++..-
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 5788899999999999999999875322 11223344455543321 122 4455532 2367889999999999
Q ss_pred HhhCCCccc
Q 021629 156 FRLGLSSVE 164 (310)
Q Consensus 156 ~~L~~d~iD 164 (310)
+.||.++++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999998876
No 148
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=46.50 E-value=1.3e+02 Score=28.93 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=49.9
Q ss_pred ccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHH
Q 021629 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (310)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (310)
.+|++.++.-...+.++..+..++..+.=.+-.| ++..+++.++++.+.+...+ |-..-. ..+..+ .+.+.
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~PLI-L~~~D~evl~aale~~~~~k--pLL~aA-----t~eNyk-~m~~l 139 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVDVPLI-LCGCDPEVLKAALEACAGKK--PLLYAA-----TEENYK-AMAAL 139 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-SSEEE-EESSHHHHHHHHHHHTTTS----EEEEE-----BTTTHH-HHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcCCCEE-EEeCCHHHHHHHHHHhCcCC--cEEeEc-----CHHHHH-HHHHH
Confidence 5778888865433357777777777665443333 44448888988887765333 222111 111122 58889
Q ss_pred HHHcCceEEEcccccc
Q 021629 242 CDELGITLIAYCPIAQ 257 (310)
Q Consensus 242 ~~~~gi~v~a~~pl~~ 257 (310)
|+++|..+++++|..=
T Consensus 140 A~~y~~pl~v~sp~Dl 155 (386)
T PF03599_consen 140 AKEYGHPLIVSSPIDL 155 (386)
T ss_dssp HHHCT-EEEEE-SSCH
T ss_pred HHHcCCeEEEEecccH
Confidence 9999999999887753
No 149
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=46.49 E-value=7.8 Score=36.85 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred cCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCce
Q 021629 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (310)
Q Consensus 189 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (310)
-|+||++||--++++.+.++...-+. -+..+.+..++-.. .+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e----~dly~~Q~~ifLDP-~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE----KDLYERQLDVFLDP-HDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH----HHHHHHHHhhhcCC-CCHHHHHHHHHcCCc
Confidence 39999999999999999988654221 12222222222211 122467777777665
No 150
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.81 E-value=1.3e+02 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEe
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQL 168 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~l 168 (310)
++.+...+ +-+.|.++|+++|++-+.
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~ 44 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHG 44 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecC
Confidence 44444333 334467777777777644
No 151
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=45.65 E-value=1.4e+02 Score=28.63 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=23.5
Q ss_pred eeeeeccCccccCcccc---chhHHHHHcCceEEEccc
Q 021629 220 ASNQVNYSLIYRKPEEN---GVKAACDELGITLIAYCP 254 (310)
Q Consensus 220 ~~~q~~~n~~~~~~~~~---~~l~~~~~~gi~v~a~~p 254 (310)
+.....||.....+.++ ++.++|+++||.+-.|-.
T Consensus 112 ~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S 149 (384)
T smart00812 112 DSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHS 149 (384)
T ss_pred CCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcC
Confidence 33344677666554332 588999999999977633
No 152
>PLN02389 biotin synthase
Probab=45.52 E-value=2.8e+02 Score=26.56 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=66.7
Q ss_pred CchhhHHHHHHHHHHHHHCCCCeEECCc-CcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 021629 69 WDDRKMKAAKAAFDTSLDNGITFFDTAE-VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (310)
Q Consensus 69 ~~~~~~~~~~~~l~~A~~~Gin~~DtA~-~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (310)
+...+.++..+.++.+.+.|++.|-... ..+.+ . ++..-+.+-+.++.... ..+.|....|. .+.+.
T Consensus 113 ~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~-~--e~~~~e~i~eiir~ik~----~~l~i~~s~G~----l~~E~- 180 (379)
T PLN02389 113 QKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV-G--RKTNFNQILEYVKEIRG----MGMEVCCTLGM----LEKEQ- 180 (379)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEecccCCC-C--ChhHHHHHHHHHHHHhc----CCcEEEECCCC----CCHHH-
Confidence 3446789999999999999999874321 11110 0 00012345555555431 23445544442 33332
Q ss_pred HHHHHHHHHhhCCCccceEEeec-C----C---CCChHHHHHHHHHHHHcCccc----EEEeecCCHHHHHHHHHHHHh
Q 021629 148 LAALKDSLFRLGLSSVELYQLHW-A----G---IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lH~-p----d---~~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~l~~~~~~~~~ 214 (310)
-+.|+..|+|++-+- +.. + . ....++.++.++.+++.|.-- -+|+ +.+.+++.+.+..++.
T Consensus 181 ----l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~ 253 (379)
T PLN02389 181 ----AAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLAT 253 (379)
T ss_pred ----HHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHHh
Confidence 233445576654321 111 1 0 134688999999999998511 2445 3344554444444443
No 153
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.51 E-value=2.8e+02 Score=26.43 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=60.8
Q ss_pred EeecCCC------------CChHHHHHHHHHHH-HcCc---ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeeccCc
Q 021629 167 QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (310)
Q Consensus 167 ~lH~pd~------------~~~~~~~~~L~~L~-~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (310)
-||.++. ++.+++++++.++. +.|+ |+++=+. |.+.++++++.+.++. .+..++-++||+
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~ 302 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNP 302 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCC
Confidence 3898875 23578889887554 5554 5666555 4478888888777654 456888999998
Q ss_pred cccCc----ccc---chhHHHHHcCceEEEccccccc
Q 021629 229 IYRKP----EEN---GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 229 ~~~~~----~~~---~~l~~~~~~gi~v~a~~pl~~G 258 (310)
+.... ... .+.+..+++||.+......+..
T Consensus 303 ~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 303 HEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 76422 111 2455677789999888777644
No 154
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=45.48 E-value=2.1e+02 Score=25.09 Aligned_cols=52 Identities=15% Similarity=0.035 Sum_probs=30.7
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..++.|++.|...+.-. .|... . .....+..+...+.+.++.++|+++|+..
T Consensus 88 ~~i~~a~~lg~~~i~~~---~g~~~---------~----~~~~~~~~~~~~~~l~~l~~~A~~~gi~l 139 (254)
T TIGR03234 88 LAIAYARALGCPQVNCL---AGKRP---------A----GVSPEEARATLVENLRYAADALDRIGLTL 139 (254)
T ss_pred HHHHHHHHhCCCEEEEC---cCCCC---------C----CCCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 37889999999887522 12110 0 00112334455566677888899998754
No 155
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=45.42 E-value=1.1e+02 Score=24.70 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC----CccceEEeecCCC--CChHHHHHHHHHHHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~----d~iDl~~lH~pd~--~~~~~~~~~L~~L~~ 188 (310)
|=-+.|+-|+|. ...+..+++-+.++++.+.. ...|++++..+.. .+..++-+.|..+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 567888889873 56788888888888887643 4579999999875 456667666666554
No 156
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=45.05 E-value=3.2e+02 Score=27.07 Aligned_cols=46 Identities=7% Similarity=-0.009 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCC-CChHHHHHHHHHHHHcC
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G 190 (310)
.+++.|.+.++...++.|+.++ .+...+. .+.+.+.+.++.|++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcC
Confidence 4678888888888887776543 2332222 22333444445555554
No 157
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=44.69 E-value=2.3e+02 Score=25.25 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=45.0
Q ss_pred HHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHHHHhcCCCeeeeeeccCcccc
Q 021629 155 LFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (310)
|..+| +|.+.+|..+. +...--|+.+.++++.-.+.-|..... +.+.+.++.+. .+ .+.+.+---+...
T Consensus 164 l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g~--~dgv~~g~a~~~~ 235 (254)
T TIGR00735 164 VEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---GK--ADAALAASVFHYR 235 (254)
T ss_pred HHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---CC--cceeeEhHHHhCC
Confidence 34555 56777776554 111112555566666655666665544 56777777544 11 2222221111111
Q ss_pred CccccchhHHHHHcCceE
Q 021629 232 KPEENGVKAACDELGITL 249 (310)
Q Consensus 232 ~~~~~~~l~~~~~~gi~v 249 (310)
...-.++.+.|+++||.+
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 111125889999999864
No 158
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=44.36 E-value=2e+02 Score=24.60 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
.+.++..++++.|.+.|+.-+=..+.+ -+...+.++. ..+.+.+=++........+.....+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~-----------v~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~ev 75 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF-----------VPLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEA 75 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH-----------HHHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHH
Confidence 356889999999999776544332221 2222333332 2355555554322334556666678
Q ss_pred HHHHHhhCCCccceEEeecCC-CCChHHHHHHHHHHHHc--Cccc--EEEeecCCHHHHHHHHHHHHhcCCCeeeeeec-
Q 021629 152 KDSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd-~~~~~~~~~~L~~L~~~--G~ir--~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~- 225 (310)
++.++ +|.|-+|+++-=..- ....+.+++.|.++++. |+.- -+...-.+.+.+..+.+.+...| .+++...
T Consensus 76 e~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G--aD~IKTsT 152 (203)
T cd00959 76 REAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG--ADFIKTST 152 (203)
T ss_pred HHHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEcCC
Confidence 88777 699999986543321 13346677788877776 4422 23444456788888888877655 4555555
Q ss_pred -cCccccCccccchh-HHHHHcCceEEE
Q 021629 226 -YSLIYRKPEENGVK-AACDELGITLIA 251 (310)
Q Consensus 226 -~n~~~~~~~~~~~l-~~~~~~gi~v~a 251 (310)
|....-..+.-.++ +.++ ..++|.+
T Consensus 153 G~~~~~at~~~v~~~~~~~~-~~v~ik~ 179 (203)
T cd00959 153 GFGPGGATVEDVKLMKEAVG-GRVGVKA 179 (203)
T ss_pred CCCCCCCCHHHHHHHHHHhC-CCceEEE
Confidence 65433333321222 3333 4566654
No 159
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=44.35 E-value=1.1e+02 Score=30.02 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
|+-|-++|++...+.+.+=++|.|-+-..-.+-+.+.+.+.++..... ..-+.++.++.|+... .+.++.+|-
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~g~~~~G~~~a~~al~ 154 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPE--LADTPIVYVSTPDFKGALEDGWAAAVEAIV 154 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccc--cCCCeEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 777777777664332235566666552111123333333333322111 1135788999988632 233333332
Q ss_pred H-HH--------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCe
Q 021629 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (310)
Q Consensus 185 ~-L~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (310)
+ +. +.++|.-||-+++.+..+.++.+.++..|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 155 EALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred HHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 2 22 34568888766665555666666677666654
No 160
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.22 E-value=2.7e+02 Score=25.99 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (310)
++..+.+..+++.|++.|=.-- +.... .+.+ +++++.. + ++-|..=.. ..++.+... .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g--~~~l~lDaN---~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---P--DIPLMADAN---SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---C--CCeEEEECC---CCCCHHHHH-----H
Confidence 5566777778899998773311 22111 3334 4444432 1 333333332 234554432 2
Q ss_pred HHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcC-cccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCc
Q 021629 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (310)
+++|. ..++.++..|-. .+-++.+.+|+++- .=-..|-|.++.+.+..+++. -..+++|+....+-.-.
T Consensus 197 ~~~l~--~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRLD--EYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHhh--cCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 34442 346777776643 22366677776653 334667778888888888654 24677777665433211
Q ss_pred cccchhHHHHHcCceEEEcccccc
Q 021629 234 EENGVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 234 ~~~~~l~~~~~~gi~v~a~~pl~~ 257 (310)
+-..+.+.|+.+||.++..+.+..
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcccc
Confidence 112488999999999987655433
No 161
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=44.17 E-value=2.8e+02 Score=27.20 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=59.7
Q ss_pred HHHHHHHHhhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHH-hhCCCccceEEeecCCCCC--hHHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLF-RLGLSSVELYQLHWAGIWG--NEGFIDGLGD 185 (310)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~-~L~~d~iDl~~lH~pd~~~--~~~~~~~L~~ 185 (310)
|+-|-++|+....+.| .+=++|.|-+..--.+-|.+.+.+.+++-++ ...--.+.++.+|.|+... ......+++.
T Consensus 71 ~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~a 150 (454)
T cd01973 71 AKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRS 150 (454)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHH
Confidence 7777788877554332 2446777777431123344444444443331 1110147889999988732 2233333333
Q ss_pred HHH--------cCcccEEEeecCCHHHHHHHHHHHHhcCCCeee
Q 021629 186 AVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 186 L~~--------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+.+ +++|.-||-.+ ++..++++.+.++..|+.+.+
T Consensus 151 li~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 151 VVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred HHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 322 46688887443 355566666667776665443
No 162
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=44.03 E-value=1.8e+02 Score=27.66 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=60.5
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHHH-cCc---ccEEEeec--CCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 165 LYQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~L~~-~G~---ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
.+-||.+++ ++.+++++++.++.+ .|+ |+++=+.+ .+.+++.++.+.++. +++.++-++|
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPy 295 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPW 295 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEec
Confidence 377998874 236888888876544 443 44554444 356888888777653 4567888899
Q ss_pred CccccCcc----cc---chhHHHHHcCceEEEccccccc
Q 021629 227 SLIYRKPE----EN---GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 227 n~~~~~~~----~~---~~l~~~~~~gi~v~a~~pl~~G 258 (310)
|++..... .. .+.+..+++|+.+......+..
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 98754221 11 2566677889999998877643
No 163
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=43.80 E-value=2.4e+02 Score=25.32 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=58.1
Q ss_pred HHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCC-------CCCHHHHHHHH
Q 021629 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAAL 151 (310)
Q Consensus 79 ~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~-------~~~~~~i~~~l 151 (310)
+.++.|++.|...|.....-.. ++++ +.++++. -.+++...-+.... ....+.+.+.+
T Consensus 86 ~vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 150 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGTPRTMQENPHYEDVVEEVLRFL 150 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCCCcccccCCCcccHHHHHHHHH
Confidence 3567777788887775433211 4344 4466654 35666554332110 01123344444
Q ss_pred HHH---HHhhCCCccceEEeecCCC-C---ChHHHHHHHHHHHHcCcccEEEeecCC
Q 021629 152 KDS---LFRLGLSSVELYQLHWAGI-W---GNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (310)
Q Consensus 152 ~~s---L~~L~~d~iDl~~lH~pd~-~---~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (310)
++. +.+.|++.-|+++=-...+ . ..-++++.++++++-|.=-.+|+||-+
T Consensus 151 ~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 151 EARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 444 4556876545543211111 1 134677788888888877789999964
No 164
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.65 E-value=2.3e+02 Score=24.95 Aligned_cols=25 Identities=4% Similarity=0.036 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCc
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~ 96 (310)
.+.++..++++...+.|+..|+...
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 3568999999999999999999653
No 165
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=43.33 E-value=89 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHH
Q 021629 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~ 213 (310)
..++.+.|+.|++.|.--.| +||.+...+...++...
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAA 137 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHH
Confidence 45678888899999854445 77777777776655443
No 166
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=43.31 E-value=45 Score=30.97 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHCCCC-eEECCcCcCCCCCCCCCchHHHHHHHHhh----ccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKE----RKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~~DtA~~Yg~g~s~~~~~sE~~lG~al~~----~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
+...++++.|.+.|+. +||.=+.+-. +..+ +++.. .... +..++++--.-. ..+++.+.+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~-~~~~~~~~~~~~~--~~~vg~tlQaYL---~~t~~~l~~ 156 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAIL-DLFLELMRKYNKG--WPNVGITLQAYL---KRTPDDLER 156 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHH-HHHHHHCCHHGTT----SEEEEEETTB---TTHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHH-HHHHHHhhHhhCC--CCeEEEEEechh---hchHHHHHH
Confidence 4677888899999988 5664333322 3332 33332 2211 345555555521 345666766
Q ss_pred HHHHHHHh---hCC-----CccceEE-----------eecCCCCChHHHHHHHHHHHHcCc-c--cEEEeecCCHHHHHH
Q 021629 150 ALKDSLFR---LGL-----SSVELYQ-----------LHWAGIWGNEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLRN 207 (310)
Q Consensus 150 ~l~~sL~~---L~~-----d~iDl~~-----------lH~pd~~~~~~~~~~L~~L~~~G~-i--r~iGvS~~~~~~l~~ 207 (310)
.++..-++ +++ -|++-=- +++++....+.....+..+..++. - -+++|.+||...+..
T Consensus 157 l~~~a~~~g~~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~ 236 (313)
T PF01619_consen 157 LLELARRRGFRLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIAL 236 (313)
T ss_dssp HHHHHHHTTS-EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHH
T ss_pred HHHHHHHcCCeEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHH
Confidence 66665542 111 1221100 111111112334555655555544 3 689999999999999
Q ss_pred HHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccc
Q 021629 208 AYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 208 ~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
+.+.++..++++.--+++|-.+..-.. .+.....+.|..+..|.|+|
T Consensus 237 a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 237 ALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp HHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEES
T ss_pred HHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecC
Confidence 999888877665222333333333222 47788888999999999997
No 167
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=43.22 E-value=2.7e+02 Score=25.62 Aligned_cols=107 Identities=20% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCc-c-cEEEeecCCH------------H
Q 021629 138 LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYSE------------K 203 (310)
Q Consensus 138 ~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~-i-r~iGvS~~~~------------~ 203 (310)
++.-.+.+.+++-++..++ +. +-+.+-.--+|+.. .++.++.|.++++.|. + -++|+=+.+. +
T Consensus 87 t~t~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~ 163 (302)
T TIGR01212 87 TNTYAPVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFA 163 (302)
T ss_pred CcCCCCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHH
Confidence 3344566677776666654 21 11222111134432 4567778888888777 4 4577766544 4
Q ss_pred HHHHHHHHHHhcCCCeeeeeeccCccccCccc-cchhHHHHHcCce
Q 021629 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGIT 248 (310)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~ 248 (310)
.+.++++.++..++.+.+ .+.+.+=....++ .+.++++.+.++.
T Consensus 164 ~~~~ai~~l~~~gi~v~~-~lI~GlPget~e~~~~t~~~l~~l~~d 208 (302)
T TIGR01212 164 CYVDAVKRARKRGIKVCS-HVILGLPGEDREEMMETAKIVSLLDVD 208 (302)
T ss_pred HHHHHHHHHHHcCCEEEE-eEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 445555555555654332 3333321211111 1345555555543
No 168
>PRK13753 dihydropteroate synthase; Provisional
Probab=43.17 E-value=2.7e+02 Score=25.59 Aligned_cols=142 Identities=12% Similarity=0.111 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEee-cCCCC--Ch----HHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhc
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLH-WAGIW--GN----EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH-~pd~~--~~----~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 215 (310)
+.+...+..++.+ .-|.|.||+=--- +|... +. +.+...++.+++.+ ..|.|-++.++.++++++.
T Consensus 23 ~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~--~~ISIDT~~~~va~~al~a---- 95 (279)
T PRK13753 23 DPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQM--HRVSIDSFQPETQRYALKR---- 95 (279)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCC--CcEEEECCCHHHHHHHHHc----
Confidence 4555555555544 4477888875533 35432 22 23446778888775 3489999999999988754
Q ss_pred CCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccc-ccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHH
Q 021629 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA-QGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (310)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~-~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~ 294 (310)
|..+ +|-+ +-+. . ..+.+.+.+++++++.+-..+ .|.-+ ......+ ..........+++-.
T Consensus 96 Gadi-INDV--sg~~-d---~~~~~vva~~~~~vVlmH~~~~~~~~~----------~~~~~~~-~dv~~ev~~~l~~~i 157 (279)
T PRK13753 96 GVGY-LNDI--QGFP-D---PALYPDIAEADCRLVVMHSAQRDGIAT----------RTGHLRP-EDALDEIVRFFEARV 157 (279)
T ss_pred CCCE-EEeC--CCCC-c---hHHHHHHHHcCCCEEEEecCCCCCCCC----------cccCCCc-chHHHHHHHHHHHHH
Confidence 2222 2211 2221 1 148889999999998876543 12100 0000011 122333444444445
Q ss_pred HHHHhcCCCcccccc
Q 021629 295 ELGENYSKTSTQSLY 309 (310)
Q Consensus 295 ~iA~~~g~s~~qvAl 309 (310)
+.|.+.|+.+.++.|
T Consensus 158 ~~~~~~Gi~~~~Iil 172 (279)
T PRK13753 158 SALRRSGVAADRLIL 172 (279)
T ss_pred HHHHHcCCChhhEEE
Confidence 566677777777654
No 169
>PLN00191 enolase
Probab=43.15 E-value=1.3e+02 Score=29.80 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=54.8
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCcccEEE-ee-cCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhH
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-VS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKA 240 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iG-vS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~ 240 (310)
.++++|..|-. ++-|+.+.+|.+..+|.-+| =+ ..+++.+.++++. -..+++++..|-+-.=.+-..+.+
T Consensus 311 y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad~i~iKl~qiGGITea~~~a~ 382 (457)
T PLN00191 311 YPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACNALLLKVNQIGTVTESIEAVK 382 (457)
T ss_pred CCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHHHH
Confidence 46778887743 33477777788888888777 22 2567888888665 236666666664433222235889
Q ss_pred HHHHcCceEEEc
Q 021629 241 ACDELGITLIAY 252 (310)
Q Consensus 241 ~~~~~gi~v~a~ 252 (310)
.|+++|+.++.-
T Consensus 383 lA~~~G~~~~is 394 (457)
T PLN00191 383 MSKAAGWGVMTS 394 (457)
T ss_pred HHHHCCCEEEeC
Confidence 999999999763
No 170
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=43.06 E-value=3.2e+02 Score=26.40 Aligned_cols=90 Identities=11% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+.+.+.+...+++..+ +-+|.+.||-- -.++.++.+++.| |..|+.+-...-+...+
T Consensus 137 ~~t~d~~~~~v~~qa~----~GVdfmTIHaG------V~~~~~~~~~~~~--R~~giVSRGGsi~a~Wm----------- 193 (432)
T COG0422 137 DLTEDDFFDTVEKQAE----QGVDFMTIHAG------VLLEYVPRTKRSG--RVTGIVSRGGSIMAAWM----------- 193 (432)
T ss_pred hCCHHHHHHHHHHHHH----hCCcEEEeehh------hhHHHHHHHHhcC--ceeeeeccchHHHHHHH-----------
Confidence 4567777777776665 45788999963 2678899999999 55666655444333221
Q ss_pred eeeeccCccccCccccchhHHHHHcCceEEEcccccccc
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
.....-|+++..-+ .+++.|+++++.+ +|+-|+
T Consensus 194 l~~~~ENply~~fd--~lleI~k~yDvtl----SLGDgl 226 (432)
T COG0422 194 LHNHKENPLYEHFD--ELLEIFKEYDVTL----SLGDGL 226 (432)
T ss_pred HHcCCcCchhhhHH--HHHHHHHHhCeee----eccCCC
Confidence 22234466665544 5999999999988 455554
No 171
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=42.96 E-value=1.3e+02 Score=23.40 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=44.5
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC---CccceEEeecCCC--CChHHHHHHHHHHHHc
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~ 189 (310)
|=-+.|+-|+|. ...+..+++.+.+..+.+.. ...|++++-.+.. .+..++-+.|..|.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 567888888873 56778888888888876633 3579999998876 4567777777776554
No 172
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.69 E-value=85 Score=27.33 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHHHHhcCCCeee
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+++...+-+ +.|-+-|+..+.+ -+ ...+..+.+++++++..=-.||..+. +.++++++++. |..|.+
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEi---t~----~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEI---TL----RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEE---eC----CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 444444433 3444556554443 22 22345666667766543356898886 78888888665 334443
Q ss_pred eeeccCccccCccccchhHHHHHcCceEEE
Q 021629 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 222 ~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
+| .. ..++++.|+++||.++.
T Consensus 82 -----SP---~~-~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -----SP---GT-TQELLAAANDSDVPLLP 102 (201)
T ss_pred -----CC---CC-CHHHHHHHHHcCCCEeC
Confidence 12 21 22589999999988875
No 173
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=42.68 E-value=2.7e+02 Score=25.45 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHHHHCC-CCeEECC
Q 021629 70 DDRKMKAAKAAFDTSLDNG-ITFFDTA 95 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~G-in~~DtA 95 (310)
+.+|.+...+.++..++.| +.-+=..
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~ 42 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVG 42 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEEC
Confidence 3567778888888888888 7765433
No 174
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=42.21 E-value=1.4e+02 Score=26.59 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=32.3
Q ss_pred hhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccccc
Q 021629 238 VKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLY 309 (310)
Q Consensus 238 ~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl 309 (310)
=++.+++.+|.+|.+.|-..- .+...++-+++.++|..|.++.+
T Consensus 119 QL~LA~e~dvPviVHTPr~nK----------------------------~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 119 QLELARELDVPVIVHTPRRNK----------------------------KEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred HHHHHHHcCCcEEEeCCCCcc----------------------------hhHHHHHHHHHHHcCCChhheeh
Confidence 478899999999998886421 12233677888888888888765
No 175
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.96 E-value=2.6e+02 Score=25.16 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcC
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEV 97 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~ 97 (310)
+++|.+...+.++..++.|++-+=....
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~Gs 43 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGT 43 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4577888999999999999986654433
No 176
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=41.70 E-value=3.3e+02 Score=26.18 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=6.5
Q ss_pred chhHHHHHcCce
Q 021629 237 GVKAACDELGIT 248 (310)
Q Consensus 237 ~~l~~~~~~gi~ 248 (310)
..++++++.++.
T Consensus 309 ~tl~~i~~~~~~ 320 (414)
T TIGR01579 309 ETLRMVKEIEFS 320 (414)
T ss_pred HHHHHHHhCCCC
Confidence 356666665543
No 177
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=41.47 E-value=3.5e+02 Score=26.49 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCC---HHHHHHHHHHHHhcC
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKRG 216 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~ 216 (310)
.+++.+.+.+++....+. .++.+.|-.|.. ...+.+++.|..++++..=..+.+++-. ++.++++.+.
T Consensus 60 Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~----- 132 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL----- 132 (442)
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-----
Confidence 578888888888777652 456677777543 3346688888889888211356777654 5666666443
Q ss_pred CCeeeeeeccCccccCccc--------------------------cchhHHHHHcCceEEEccccccc
Q 021629 217 IPLASNQVNYSLIYRKPEE--------------------------NGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~--------------------------~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
.++.+.+.++-+++.... ..-++.+.+.|+.+....++-.|
T Consensus 133 -gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 133 -GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred -CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 233444444433321110 01245577889988777777655
No 178
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.36 E-value=2.5e+02 Score=26.55 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=60.9
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHHHc-Cc---ccEEEe--ecCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~L~~~-G~---ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
.+.||.|+. ++.+++++++.++.++ |+ ++++=+ -|.+.+.++++.+.++.. +..++-++|
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l--~~kVnLIPy 292 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSL--DCKINVIPL 292 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhC--CCcEEEEcc
Confidence 377888864 3468899999877644 32 334434 355778888888877654 356777888
Q ss_pred Ccccc---Cccc---cchhHHHHHcCceEEEccccccc
Q 021629 227 SLIYR---KPEE---NGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 227 n~~~~---~~~~---~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
|+... .+.+ ..+.+..+++||.+......+..
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~d 330 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKD 330 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcC
Confidence 87431 1111 13566788889999998877643
No 179
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.22 E-value=1.1e+02 Score=26.70 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHHHHhcCCCeee
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~ 221 (310)
+++...+ +-+.|-.-|+..+.+=+ ...+.++.+++++++..=-.||..+. +.++++.+++. |..|.+
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fiv 85 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFIV 85 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEEE
Confidence 4444433 34455566665544322 22346666777776643366998887 78888888665 334543
Q ss_pred eeeccCccccCccccchhHHHHHcCceEEE
Q 021629 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 222 ~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
+|.. ..++++.|+++||.+++
T Consensus 86 -----sP~~----~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 -----SPGL----TPELAKHAQDHGIPIIP 106 (204)
T ss_pred -----CCCC----CHHHHHHHHHcCCcEEC
Confidence 2221 22599999999998876
No 180
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=41.18 E-value=1.7e+02 Score=26.58 Aligned_cols=106 Identities=11% Similarity=-0.137 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHH
Q 021629 140 WRLGRQSVLAALKDSLFRL------GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L------~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (310)
..++.+.-.+-.+-..+.+ ++++|-+=.+-.+.. .++.+++++-+.|.++|-+-.- -++-++-..+++.+
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v~a~rLed- 156 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLP-YINADPMLAKHLED- 156 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEee-cCCCCHHHHHHHHH-
Confidence 4566665555554445544 566666655555544 4578999999999999965432 22334433344433
Q ss_pred HHhcCCCeeeeeeccCccccCcc--ccchhHH-HHHcCceEEEc
Q 021629 212 LKKRGIPLASNQVNYSLIYRKPE--ENGVKAA-CDELGITLIAY 252 (310)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~--~~~~l~~-~~~~gi~v~a~ 252 (310)
....+++.--+|+-.... +...++. ++..+|.|+.-
T Consensus 157 -----~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivd 195 (267)
T CHL00162 157 -----IGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIID 195 (267)
T ss_pred -----cCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEe
Confidence 245555555555543221 1113333 44457777764
No 181
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=41.09 E-value=1.7e+02 Score=25.69 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=49.2
Q ss_pred HhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEeec-CCHHHHHHHHHHHHhcCCCeeeeeeccCccccCc
Q 021629 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (310)
Q Consensus 156 ~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (310)
..+|.||+=+++.- +|...+.+.+-+....+.. +..+||.- .+.+.+.++++. ..++++|+.-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~------ 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD------ 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC------
Confidence 45788887766555 4444444444333332222 88999874 477778888665 67999998654
Q ss_pred cccchhHHHHHcC-ceEE
Q 021629 234 EENGVKAACDELG-ITLI 250 (310)
Q Consensus 234 ~~~~~l~~~~~~g-i~v~ 250 (310)
+..+.++..++.. +.++
T Consensus 85 e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred CCHHHHHHHHhhcCCceE
Confidence 2223566666554 5443
No 182
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=40.80 E-value=1.1e+02 Score=27.40 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHH
Q 021629 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~ 212 (310)
..++.+.|+.|+++|..-.| +||.+...+...++..
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLA 138 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHH
Confidence 34577778888888854444 6666666666665543
No 183
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=40.68 E-value=1.3e+02 Score=28.46 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhCCCccceEEeecCCCC----ChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeee
Q 021629 147 VLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl~~lH~pd~~----~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (310)
-+..+-+.|.++|+++|++-..-.|... +.+++++.+.+ ...++...+. .+.+.++.+++. +.....+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~----g~~~v~i 140 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAA----GAKEVAV 140 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHc----CcCEEEE
Confidence 4555667799999999998755555432 33456666543 2335555554 478888888664 2221111
Q ss_pred e-------eccCccccCccc-----cchhHHHHHcCceEEEc
Q 021629 223 Q-------VNYSLIYRKPEE-----NGVKAACDELGITLIAY 252 (310)
Q Consensus 223 q-------~~~n~~~~~~~~-----~~~l~~~~~~gi~v~a~ 252 (310)
- ...|+- ...++ .+++++++++|+.+.++
T Consensus 141 ~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 141 FASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1 111111 11111 14788999999988543
No 184
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.51 E-value=96 Score=26.86 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 179 FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
.++.++.++++--=-.||..+. +.++++.+++.. ..|.+ .+. .+.+++++|+++||.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG----A~Fiv--------SP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG----AQFIV--------SPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-----SEEE--------ESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC----CCEEE--------CCC-CCHHHHHHHHHcCCcccC
Confidence 4445554544322256899887 888888887762 34544 122 122699999999999987
No 185
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=40.49 E-value=2.3e+02 Score=24.05 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCC--CCchHHHHHHHHhhccCCCCCCcEEEEecCCCC---CCCCCHHHHHH
Q 021629 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG--AINSETLLGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQSVLA 149 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~--~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~---~~~~~~~~i~~ 149 (310)
+.+..+|-.++..|-..+= .|||.|-. -+-.++++|++.+.++.. --+-|+|-.... -.+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~----cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLA----CGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEEE----ECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 5667778888899988884 46765511 135677888888776632 356666555431 135666654
Q ss_pred HHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHH
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~ 209 (310)
+.+..+.++.. =|+++==.+.. ..+.+++++++.|+.|. .-||++.-+...+..+.
T Consensus 99 -FsRqveA~g~~-GDvLigISTSG-NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 99 -FSRQVEALGQP-GDVLIGISTSG-NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLL 154 (176)
T ss_pred -HHHHHHhcCCC-CCEEEEEeCCC-CCHHHHHHHHHHHHcCC-EEEEEecCCCccccccc
Confidence 55666777753 37766655543 45679999999999995 55888888777776664
No 186
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=40.34 E-value=1.3e+02 Score=23.87 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=45.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC---ccceEEeecCCC--CChHHHHHHHHHHHHc
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d---~iDl~~lH~pd~--~~~~~~~~~L~~L~~~ 189 (310)
|=-+.|+-|+|. ...+..+++-+.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 49 R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 49 RFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred EEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 667999999974 466778888888888777653 369999998765 4567777777766543
No 187
>PRK00077 eno enolase; Provisional
Probab=40.33 E-value=1.5e+02 Score=28.96 Aligned_cols=99 Identities=16% Similarity=0.050 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcC--cccEEEee--cCCHHHHHHHHHHHHhcCCC
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVS--NYSEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~~~ 218 (310)
+++...+.+.+.++. .++++|..|-... -|+.+.+|.++- +|.-+|=- ..+.+.+.++++. -.
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~---D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLDEN---DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCCCc---cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 444444444444444 4677888775422 356666666653 55554432 2368888888655 24
Q ss_pred eeeeeeccCccccCccccchhHHHHHcCceEEE-ccc
Q 021629 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA-YCP 254 (310)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a-~~p 254 (310)
.+++|+..+-+-.=.+-..+...|+.+|+.++. +..
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~s 365 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRS 365 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCC
Confidence 677777666543222222588999999998654 444
No 188
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=40.25 E-value=1.5e+02 Score=27.52 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=16.6
Q ss_pred chhHHHHHcCceEEEcccc
Q 021629 237 GVKAACDELGITLIAYCPI 255 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl 255 (310)
.+++.|+++||.|.||-.+
T Consensus 74 ~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred HHHHHHHHcCCEEEEEEEe
Confidence 4899999999999999744
No 189
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=39.69 E-value=73 Score=31.26 Aligned_cols=106 Identities=11% Similarity=-0.028 Sum_probs=65.6
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHhhCCCccceEEeecCCCCChHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~----------~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~ 179 (310)
|.++.-+-+.....- +.+++|+.-+|..-... +-.+. -.-.+.-+||.+.|+|.. ...++|.
T Consensus 151 eT~~~~~r~h~~gdL-~Gk~~lTaGLGGMgGAQ-plA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeA 222 (561)
T COG2987 151 ETFAEAGRQHFGGDL-KGKWVLTAGLGGMGGAQ-PLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEA 222 (561)
T ss_pred HHHHHHHHHhcCCCc-cceEEEecCCCcccccc-hHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHH
Confidence 444443334433222 57888988887531110 10000 011334467888999841 1468999
Q ss_pred HHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeee--eeccC
Q 021629 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--QVNYS 227 (310)
Q Consensus 180 ~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~--q~~~n 227 (310)
+...++..++|+-.+||+-.--++.+.++++ +++.|+++ |...+
T Consensus 223 l~~a~~~~~ag~p~SIgl~GNaaei~~~l~~----r~~~pD~vtDQTsaH 268 (561)
T COG2987 223 LALAEEATAAGEPISIGLLGNAAEILPELLR----RGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHhcCCceEEEEeccHHHHHHHHHH----cCCCCceeccccccc
Confidence 9999999999999999999877777777654 35666655 55443
No 190
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=39.69 E-value=82 Score=30.06 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=11.5
Q ss_pred chhHHHHHcCceEEEc
Q 021629 237 GVKAACDELGITLIAY 252 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~ 252 (310)
.+++.|+++||.++.-
T Consensus 62 ~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 62 PLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHhCCCCEEEe
Confidence 3777777777777764
No 191
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=39.64 E-value=2.5e+02 Score=24.27 Aligned_cols=87 Identities=10% Similarity=0.170 Sum_probs=52.3
Q ss_pred hhCCCccceEEee-cCCC--CChH----HHHHHHHHHHH--cCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 157 RLGLSSVELYQLH-WAGI--WGNE----GFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 157 ~L~~d~iDl~~lH-~pd~--~~~~----~~~~~L~~L~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
.-|-|+||+---- +|.. .+.+ .+...++.+++ .+ --|.+-+++++.++++++. +.++..+...+.
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~--~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~ 103 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPD--VPLSIDTFNPEVAEAALKA----GADIINDISGFE 103 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHH----TSSEEEETTTTS
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCC--eEEEEECCCHHHHHHHHHc----CcceEEeccccc
Confidence 3477888874322 2322 1222 34444555554 23 4578889999999998765 344443333222
Q ss_pred ccccCccccchhHHHHHcCceEEEcccc
Q 021629 228 LIYRKPEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
. ..++++.++++|..++++..-
T Consensus 104 ~------~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D------DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S------STTHHHHHHHHTSEEEEESES
T ss_pred c------cchhhhhhhcCCCEEEEEecc
Confidence 2 125999999999999987655
No 192
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.10 E-value=1.7e+02 Score=31.65 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
|+-|-++|+....+.+.+=++|.|-+..--.+-|-+.+.+.+++-... ..-+.++.++-|+... ...++++|-
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~eiIGDDi~~vi~~~~~~~~~--~~~~pvi~v~tpgF~Gs~~~G~~~a~~aiv 633 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLTETMGDDVRSAIVQFREEHPE--LDDVPVVWASTPDYCGSLQEGYAAAVEAIV 633 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchHhhhhcCHHHHHHHHHhhccc--cCCCeEEEeeCCCCccCHHHHHHHHHHHHH
Confidence 777777777644332245677777764211122333333322211111 1236899999998732 233333332
Q ss_pred -HHH-----HcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee
Q 021629 185 -DAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 185 -~L~-----~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
.+. ..++|.-||-++..+..++++.+.++..|+.+.+
T Consensus 634 ~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 634 ATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 232 3467888887776566777777777777776544
No 193
>PRK09989 hypothetical protein; Provisional
Probab=38.60 E-value=2.8e+02 Score=24.49 Aligned_cols=52 Identities=10% Similarity=-0.077 Sum_probs=30.0
Q ss_pred chhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
..++.|++.|...+... .|.+.. ........+...+.+.++.++|+++|++.
T Consensus 89 ~~i~~A~~lg~~~v~v~---~g~~~~-------------~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 140 (258)
T PRK09989 89 LALEYALALNCEQVHVM---AGVVPA-------------GEDAERYRAVFIDNLRYAADRFAPHGKRI 140 (258)
T ss_pred HHHHHHHHhCcCEEEEC---ccCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 47888899999876421 121110 00112233445566678888888888764
No 194
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=38.58 E-value=3.4e+02 Score=25.56 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
.+++.++..++++.+.+.|+..|.-. | |+-.-+..-.+++ +.+++.. -.+.|.|-.. ..+.+.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~---G-GEPll~~~~~~il-~~~~~~g-----~~~~i~TNG~----ll~~~~~-- 107 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFS---G-GEPLLRKDLEELV-AHARELG-----LYTNLITSGV----GLTEARL-- 107 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEE---C-CccCCchhHHHHH-HHHHHcC-----CcEEEECCCc----cCCHHHH--
Confidence 34677889999999999998887643 3 2110011112222 2233222 2456666552 2344432
Q ss_pred HHHHHHHhhCCCccceEEeecCCC--------C--ChHHHHHHHHHHHHcCcc--cEEEeecCCHHHHHHHHHHHHhcCC
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI--------W--GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~--------~--~~~~~~~~L~~L~~~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~ 217 (310)
+.|+..|+++|- +-|+.++. . ..+.+++.++.|++.|.- -.+.++..+.+++.++++.+...++
T Consensus 108 ---~~L~~~g~~~v~-iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv 183 (378)
T PRK05301 108 ---AALKDAGLDHIQ-LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGA 183 (378)
T ss_pred ---HHHHHcCCCEEE-EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCC
Confidence 335556655433 23444332 1 257789999999998841 1223566788999999888887775
Q ss_pred C
Q 021629 218 P 218 (310)
Q Consensus 218 ~ 218 (310)
+
T Consensus 184 ~ 184 (378)
T PRK05301 184 D 184 (378)
T ss_pred C
Confidence 4
No 195
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.52 E-value=3e+02 Score=24.89 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=14.5
Q ss_pred eeeeccCccccCccccchhHHHHHcCceE
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITL 249 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (310)
+.+..||++.....+ ..++.|++.|+.-
T Consensus 95 vlm~Y~N~i~~~G~e-~F~~~~~~aGvdg 122 (263)
T CHL00200 95 VIFTYYNPVLHYGIN-KFIKKISQAGVKG 122 (263)
T ss_pred EEEecccHHHHhCHH-HHHHHHHHcCCeE
Confidence 466666665543322 2555555555543
No 196
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=38.43 E-value=3.9e+02 Score=26.19 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=54.2
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC---hHHH---HHH
Q 021629 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGF---IDG 182 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~---~~~~---~~~ 182 (310)
|+-|-++|++..+..|+ +-++|.+-+...-.+-+.+.+.+.++ ++.+ .+.++.+|.|+... .... .++
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~---~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVM---EEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHH---HhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 77777877766543322 34667766632111223333333322 2221 16799999888632 1222 222
Q ss_pred -HHHHH--------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 183 -L~~L~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
++++. ..+.|.-||-.+. +..+.++.+.++..|+.+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 23333 2367888886554 3345556566666666553
No 197
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.30 E-value=2.6e+02 Score=24.82 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=9.3
Q ss_pred chhHHHHHcCceEE
Q 021629 237 GVKAACDELGITLI 250 (310)
Q Consensus 237 ~~l~~~~~~gi~v~ 250 (310)
.+.+.++++||.+.
T Consensus 137 ~l~~~a~~~gv~l~ 150 (284)
T PRK13210 137 WAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHhCCEEE
Confidence 36677777787553
No 198
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=38.17 E-value=1.6e+02 Score=26.13 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCc-ccEEEeecC------CHHHHHHHHHHH
Q 021629 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKL 212 (310)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~----~~~~~~~~~L~~L~~~G~-ir~iGvS~~------~~~~l~~~~~~~ 212 (310)
++.+..+++...+.- - .+- ++++.-+. ......++.+++|++.|. |..||+=.| +...+...++..
T Consensus 102 ~~~i~~af~~ar~~~-P-~a~-l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 102 EDYIEKAFRYAREAD-P-DAK-LFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred hHHHHHHHHHHHHhC-C-CCE-EEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 466777776664432 2 122 23342111 123467888899999998 999998555 467788887777
Q ss_pred HhcCCCeeeeeeccCccccCc----cccchhHHHHHcC--ceEEEcccc
Q 021629 213 KKRGIPLASNQVNYSLIYRKP----EENGVKAACDELG--ITLIAYCPI 255 (310)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~----~~~~~l~~~~~~g--i~v~a~~pl 255 (310)
...+.++.+-++.+....... .-..+++.|.++. .+|+-|.-.
T Consensus 179 ~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~ 227 (254)
T smart00633 179 ASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVT 227 (254)
T ss_pred HHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCc
Confidence 766777666655554322100 0125888888875 677777433
No 199
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=38.15 E-value=99 Score=30.82 Aligned_cols=91 Identities=9% Similarity=0.006 Sum_probs=52.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEE
Q 021629 126 EVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~----------~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~i 195 (310)
+.++||++=+|..-. --|.... -.-++.-+|+.+.|+|.+. .+.++.++..++.+++|+..+|
T Consensus 156 ~Gk~~lTaGLGGMgG-AQplA~~m~g~v~l~vEvd~~ri~kR~~~g~ld~~~------~~ldea~~~~~ea~~~~~~~SI 228 (546)
T PF01175_consen 156 AGKLFLTAGLGGMGG-AQPLAATMAGGVGLIVEVDPSRIEKRLEQGYLDEVT------DDLDEALARAKEARAKKEPLSI 228 (546)
T ss_dssp TT-EEEEE--STTCC-HHHHHHHHTT-EEEEEES-HHHHHHHHHTTSSSEEE------SSHHHHHHHHHHHHHTT--EEE
T ss_pred cceEEEEeccccccc-chHHHHHhcCceEEEEEECHHHHHHHHhCCCeeEEc------CCHHHHHHHHHHhhccCCeeEE
Confidence 678999999986311 0011000 0123445778888998643 4689999999999999999999
Q ss_pred EeecCCHHHHHHHHHHHHhcCCCee--eeeeccC
Q 021629 196 GVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (310)
Q Consensus 196 GvS~~~~~~l~~~~~~~~~~~~~~~--~~q~~~n 227 (310)
|+-.--++.++++.+. ++.|+ ..|...+
T Consensus 229 g~~GN~ad~~~~l~~~----~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 229 GLLGNAADLWEELVER----GIIPDLVTDQTSAH 258 (546)
T ss_dssp EEES-HHHHHHHHHHT----T---SEE---SSTT
T ss_pred EEeccHHHHHHHHHHc----CCCCCcccCCCccc
Confidence 9988767777766443 55554 4466653
No 200
>PLN02591 tryptophan synthase
Probab=38.12 E-value=3e+02 Score=24.74 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCC---chHHHHH---------HHHhhccCCCCCCcEEEEecCCCCCC
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLG---------RFIKERKQRDPEVEVTVATKFAALPW 140 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~---~sE~~lG---------~al~~~~~~~~R~~~~I~tK~~~~~~ 140 (310)
+.+...++++...+.|++.++..--|.+..+||+. .+++.|. +.+++.... ..-.+++.|=.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm~Y~----- 87 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLFTYY----- 87 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecc-----
Confidence 35888899999999999999988888777776653 3333322 223332110 01122222211
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~ 211 (310)
..-+...+++.++++.---+|=+++.. .+.++.-+..+.+++.|.-.-.=++.- +.++++++.+.
T Consensus 88 ---N~i~~~G~~~F~~~~~~aGv~GviipD---LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 88 ---NPILKRGIDKFMATIKEAGVHGLVVPD---LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA 153 (250)
T ss_pred ---cHHHHhHHHHHHHHHHHcCCCEEEeCC---CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh
Confidence 111233455555444333355555553 456777777788888886555555443 35677777554
No 201
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=38.07 E-value=3.5e+02 Score=25.44 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHH-------HHHhhccCCCCCCcEEEEecCCCCCCCCCH
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG-------RFIKERKQRDPEVEVTVATKFAALPWRLGR 144 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG-------~al~~~~~~~~R~~~~I~tK~~~~~~~~~~ 144 (310)
.+.|+...+++.+.+.|++=+=-+ |. |-.|- +.|+... -+++-++|-.-
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GG---------EPllR~dl~eIi~~l~~~~----~~~islTTNG~-------- 98 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GG---------EPLLRKDLDEIIARLARLG----IRDLSLTTNGV-------- 98 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CC---------CchhhcCHHHHHHHHhhcc----cceEEEecchh--------
Confidence 467999999999999999866433 22 22222 2233331 25777777762
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCC---------CChHHHHHHHHHHHHcCc----ccEEEeecCCHHHHHHHHHH
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---------~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~l~~~~~~ 211 (310)
.......-|+.-|++.|- +.||..|+ ...+++++.+++.++.|. |..+=+.+.+-++|..+++.
T Consensus 99 --~L~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 99 --LLARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred --hHHHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 344566677777776665 34555554 125789999999999986 45666777888999999888
Q ss_pred HHhcCCCee
Q 021629 212 LKKRGIPLA 220 (310)
Q Consensus 212 ~~~~~~~~~ 220 (310)
+...++.+.
T Consensus 176 ~~~~~~~lr 184 (322)
T COG2896 176 AKERGAQLR 184 (322)
T ss_pred HhhcCCceE
Confidence 887765433
No 202
>PRK05406 LamB/YcsF family protein; Provisional
Probab=37.81 E-value=1.3e+02 Score=27.18 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=49.1
Q ss_pred eecccccCCCCCCCCCcCchhhHHHHHHHHHHH-HHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEE
Q 021629 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (310)
Q Consensus 52 glG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~ 130 (310)
+||.|.+|.+ ++...+|..| +.+|+ +.|+ ...+-+.++-.. ...+-
T Consensus 13 ~fG~w~~g~D-------------~~lmp~IssANIACG~-------HAGD---------p~~M~~tv~lA~----~~gV~ 59 (246)
T PRK05406 13 SFGAWKMGDD-------------EALLPLVTSANIACGF-------HAGD---------PAVMRRTVRLAK----ENGVA 59 (246)
T ss_pred CCCCCCCCCH-------------HHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCe
Confidence 6788887764 7777777766 45665 5666 666777776554 35677
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHhh
Q 021629 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (310)
Q Consensus 131 I~tK~~~~--------~~~~~~~~i~~~l~~sL~~L 158 (310)
|...-+.. ....+++.++..+...+..|
T Consensus 60 IGAHPgypD~~gFGRR~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 60 IGAHPGYPDLEGFGRRNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred EccCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77776642 23467788887776666665
No 203
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=37.77 E-value=1.8e+02 Score=28.37 Aligned_cols=84 Identities=14% Similarity=0.004 Sum_probs=50.8
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcC--cccEEEeec--CCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccch
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 238 (310)
.++++|..|-.. +-|+.+.+|.+.- .|.-+|=-. .+.+.++++++. -..+++|+..|-+-.=.+-..+
T Consensus 278 ~~i~~iEdPl~~---~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~i 349 (425)
T TIGR01060 278 YPIVSIEDGLSE---EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLDA 349 (425)
T ss_pred CCcEEEEcCCCc---ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHH
Confidence 467788877542 2356666666553 555444222 258888888654 2466777766654322222258
Q ss_pred hHHHHHcCceEE-Eccc
Q 021629 239 KAACDELGITLI-AYCP 254 (310)
Q Consensus 239 l~~~~~~gi~v~-a~~p 254 (310)
.+.|+++|+.++ .+..
T Consensus 350 a~lA~~~Gi~~vv~h~s 366 (425)
T TIGR01060 350 VELAKKAGYTAVISHRS 366 (425)
T ss_pred HHHHHHcCCcEEEecCC
Confidence 899999999855 4443
No 204
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.48 E-value=3.2e+02 Score=24.80 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEEC---CcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDT---AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~Dt---A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
+.++..+..+.+.+.|+..||. ++.+..+ .+.-..+.+.+-+.++.... .-++-|..|+.. +. +.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~---~~~~Pv~vKl~~---~~--~~~~- 169 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKK---ATDVPVIVKLTP---NV--TDIV- 169 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHh---ccCCCEEEEeCC---Cc--hhHH-
Confidence 3577778888888889998885 2221110 00001125666666665532 125778899853 11 1222
Q ss_pred HHHHHHHhhCCCccceEE------eecCCCC--------------ChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHH
Q 021629 150 ALKDSLFRLGLSSVELYQ------LHWAGIW--------------GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNA 208 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~------lH~pd~~--------------~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~ 208 (310)
.+-+.+...|.|.|++.- +|..... ...-.++.+.++++.=.|.-||.... +++.+.++
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 233456677877776531 1210000 01225677777777666889999887 77888888
Q ss_pred HHHHHhcCCCeeeeeeccCccc----cCccccchhHHHHHcCc
Q 021629 209 YEKLKKRGIPLASNQVNYSLIY----RKPEENGVKAACDELGI 247 (310)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~----~~~~~~~~l~~~~~~gi 247 (310)
+.. ..+.+|+-=-++. ......++.++.+++|.
T Consensus 250 l~~------GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 250 LMA------GASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHc------CCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 643 2455654433333 11111245555555553
No 205
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=37.46 E-value=28 Score=30.08 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCc
Q 021629 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (310)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi 247 (310)
.++.|+....+|+|+.+ ++..+..+++.....+..=.+-|+-+++=-...+-.-++..|+++++
T Consensus 4 Fle~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 4 FLECLEPFILSGKIKSL-----PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 46788888899998865 66777777777655442222223333322222111248899999965
No 206
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=37.38 E-value=1.5e+02 Score=27.34 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=52.9
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcC-cccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHH
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~ 241 (310)
.++.+|..|-+ .. +.+..|.++- .--..|-|-++.+.+..+++. ...+++|+....+-.-.+-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 46666766643 12 5566665553 334566666777777777543 2356666665543211111248999
Q ss_pred HHHcCceEEEcccccccc
Q 021629 242 CDELGITLIAYCPIAQGA 259 (310)
Q Consensus 242 ~~~~gi~v~a~~pl~~G~ 259 (310)
|+.+||.++..+.+..|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999887776654
No 207
>PRK01060 endonuclease IV; Provisional
Probab=37.33 E-value=2.5e+02 Score=25.08 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=13.0
Q ss_pred HHHHhhCCCccceEEeecC
Q 021629 153 DSLFRLGLSSVELYQLHWA 171 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~p 171 (310)
+.++++|.|.++++ ++.|
T Consensus 19 ~~~~~~G~d~vEl~-~~~p 36 (281)
T PRK01060 19 AEAAEIGANAFMIF-TGNP 36 (281)
T ss_pred HHHHHcCCCEEEEE-CCCC
Confidence 56678899999975 3444
No 208
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=37.28 E-value=3.2e+02 Score=27.70 Aligned_cols=118 Identities=9% Similarity=0.134 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+.+.+.+++.|++..+ +=+|.+.||--- ..+.++.++ + |..|+-+-....+...+
T Consensus 291 ~lt~e~~~d~ieeQAe----qGVDf~TIHaGv------~~~~v~~~~--~--R~tgIVSRGGSima~Wm----------- 345 (607)
T PRK09284 291 DLTWEIFRDTLIEQAE----QGVDYFTIHAGV------LLRYVPLTA--K--RVTGIVSRGGSIMAKWC----------- 345 (607)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChhh------HHHHHHHHh--C--cccCcccCCHHHHHHHH-----------
Confidence 4556666666666554 346778888532 344444444 3 66676665544444332
Q ss_pred eeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHH--HHHHHHHHHHH
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQ--PLLNRIKELGE 298 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~l~~iA~ 298 (310)
.....-|+++..-+ ++++.|++++|.+ +|+-|+=-|.+. ......+.. ..+.+|.+.|.
T Consensus 346 l~h~kENplYe~FD--~ileI~k~YDVtl----SLGDGLRPG~ia-------------DA~D~AQ~~EL~tLGELt~rA~ 406 (607)
T PRK09284 346 LAHHKENFLYTHFE--EICEIMAAYDVSF----SLGDGLRPGSIA-------------DANDEAQFAELETLGELTKIAW 406 (607)
T ss_pred HHcCCcCcHHHHHH--HHHHHHHHhCeee----eccCCcCCCccc-------------cCCcHHHHHHHHHHHHHHHHHH
Confidence 11224456664433 5999999999998 566664332221 111112222 23567888888
Q ss_pred hcCC
Q 021629 299 NYSK 302 (310)
Q Consensus 299 ~~g~ 302 (310)
++|+
T Consensus 407 e~gV 410 (607)
T PRK09284 407 EHDV 410 (607)
T ss_pred HcCC
Confidence 8875
No 209
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=37.26 E-value=17 Score=25.23 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCcccc
Q 021629 292 RIKELGENYSKTSTQS 307 (310)
Q Consensus 292 ~l~~iA~~~g~s~~qv 307 (310)
.+.+||+++|+|+.+|
T Consensus 24 ~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTI 39 (60)
T ss_pred cHHHHHHHHCCCHHHH
Confidence 6899999999999886
No 210
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=37.26 E-value=3.6e+02 Score=26.62 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=55.6
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-----ChHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-----~~~~~~~~L~ 184 (310)
|+-|-++|.+...+.+.+=++|.|-+...-.+.+.+.+.+.++ ++++ +.++.++-+... ....++++|-
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~---~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAA---EKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHH---HhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 7777777776554332455677776642112334444444443 2333 688888887763 2333444443
Q ss_pred H-HH--------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 185 ~-L~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+ |. +.+.|.-||-.++.. .+.++.+.++..|+++.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~g-d~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLAG-ELWQVKPLLDRLGIRVV 221 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCCC-CHHHHHHHHHHcCCeEE
Confidence 2 33 235688888666543 23444444555565544
No 211
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=37.23 E-value=2.8e+02 Score=24.19 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
+.++++..++++.|.+.|+.-+=..+.| -....+.|+. .++-|+|=++......+.+.-...
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E 75 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGFPLGASTTDVKLYE 75 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHH
Confidence 3467999999999999987655433333 3344455542 357777777632223333444444
Q ss_pred HHHHHHhhCCCccceEEeecC-CCCChHHHHHHHHHHHHc--Ccc-cEE-EeecCCHHHHHHHHHHHHhcCCCeeeeeec
Q 021629 151 LKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ--GLV-KAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~p-d~~~~~~~~~~L~~L~~~--G~i-r~i-GvS~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (310)
+++.+ ++|.|-||+++--.. ...+.+.+.+.|.+.++. |+. +-| -.+-.+.+++..+.+.+...| .+++...
T Consensus 76 ~~~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG--ADfvKTs 152 (211)
T TIGR00126 76 TKEAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG--ADFVKTS 152 (211)
T ss_pred HHHHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEeC
Confidence 55544 479999998776442 223456777777777764 542 222 222245577778877766654 5555555
Q ss_pred --cCccccCcc
Q 021629 226 --YSLIYRKPE 234 (310)
Q Consensus 226 --~n~~~~~~~ 234 (310)
|..-.-..+
T Consensus 153 TGf~~~gat~~ 163 (211)
T TIGR00126 153 TGFGAGGATVE 163 (211)
T ss_pred CCCCCCCCCHH
Confidence 664333333
No 212
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.22 E-value=1.7e+02 Score=27.28 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=21.6
Q ss_pred EeecCCCCChHHHHHHHHHHHHcCcccEEEee
Q 021629 167 QLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (310)
Q Consensus 167 ~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS 198 (310)
++|.-...+.++-++.|+.+++.| +|++|+.
T Consensus 98 ~l~~ega~~~~~dl~~L~~~~~~G-vR~lglt 128 (313)
T COG2355 98 VLHMEGAEPLGDDLDKLELFHALG-VRSLGLT 128 (313)
T ss_pred EEeccCcccccccHHHHHHHHHhC-ceEEEee
Confidence 445444456666678888888888 8888765
No 213
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=36.69 E-value=3.2e+02 Score=24.70 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCC---chHHHHH---------HHHhhccCCCCCCcEEEEecCCCCCC
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLG---------RFIKERKQRDPEVEVTVATKFAALPW 140 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~---~sE~~lG---------~al~~~~~~~~R~~~~I~tK~~~~~~ 140 (310)
+.+...++++...+.|+..++..--|.+..+|||. .+++.|. +.+++.... ..-.+++.|=.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~----- 100 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYY----- 100 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecc-----
Confidence 34888899999999999999988888777777753 2232221 223332210 01123333222
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~ 211 (310)
..-+...+++-++.+.---+|-+.+|.. +.++.-+.++.+++.|.---.=++.. +.++++++.+.
T Consensus 101 ---N~i~~~G~e~F~~~~~~aGvdgviipDL---P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 101 ---NPVLHYGINKFIKKISQAGVKGLIIPDL---PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred ---cHHHHhCHHHHHHHHHHcCCeEEEecCC---CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 1112334444444443334688888874 45777777788888886443344444 35777777655
No 214
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.57 E-value=2.4e+02 Score=26.98 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=61.5
Q ss_pred eEEeecCCC-------------CChHHHHHHHHH-HHHcCc---ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeec
Q 021629 165 LYQLHWAGI-------------WGNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (310)
Q Consensus 165 l~~lH~pd~-------------~~~~~~~~~L~~-L~~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (310)
.+.||.++. ++.+++++++.+ +.+.|+ |+++=+. |.+.+.+.++.+.++. .+..++-++
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~--~~~~VnlIp 314 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASR--FFCKINLID 314 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhc--CCCeeEEee
Confidence 367887654 245788888875 455562 4444444 4566778888777654 346778889
Q ss_pred cCccccCcccc-------chhHHHHHcCceEEEccccccc
Q 021629 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 226 ~n~~~~~~~~~-------~~l~~~~~~gi~v~a~~pl~~G 258 (310)
||++...+... .+.+..+++|+.+......+..
T Consensus 315 yn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 315 YNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcc
Confidence 99876643221 3677788899999998877643
No 215
>PRK12569 hypothetical protein; Provisional
Probab=36.53 E-value=1.4e+02 Score=26.84 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=50.0
Q ss_pred eecccccCCCCCCCCCcCchhhHHHHHHHHHHH-HHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEE
Q 021629 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (310)
Q Consensus 52 glG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~ 130 (310)
+||.|.+|.. -+++...+|..| +.+|+ +.|+ ...+-+.++-.. ...+-
T Consensus 14 sfG~~~~g~~-----------~D~~lmp~ItsaNIACG~-------HAGD---------p~~M~~tv~lA~----~~~V~ 62 (245)
T PRK12569 14 GFGPWRIGDG-----------VDEALMPLISSANIATGF-------HAGD---------PNIMRRTVELAK----AHGVG 62 (245)
T ss_pred CCCCcCCCCc-----------cHHHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCE
Confidence 6788888761 127777777766 45665 5666 667777776554 35677
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHhh
Q 021629 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (310)
Q Consensus 131 I~tK~~~~--------~~~~~~~~i~~~l~~sL~~L 158 (310)
|...-+.. ....+++.++..+...+..|
T Consensus 63 IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 63 IGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGAL 98 (245)
T ss_pred eccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77766542 23467888888777666666
No 216
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=36.52 E-value=2.9e+02 Score=25.49 Aligned_cols=51 Identities=8% Similarity=0.155 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccccc
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
++.+|.++.+..+..+++..+.+..++.- -+-..+++.|+.++...|++.+
T Consensus 237 s~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 237 GAQRLHEIRTQLVEQKATCVFAEPQFRPA-------VIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCChH-------HHHHHHHhcCCeEEEecccccc
Confidence 67888889888888888877776655441 2455677889988887888754
No 217
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=36.32 E-value=2.6e+02 Score=23.74 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=67.7
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCcccEEEeecCCH--
Q 021629 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE-- 202 (310)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~~-- 202 (310)
...+.-.+.. ....-+.....+...++..+... +-+.+--++. .....+.+.+..|++.| -.+++.+|..
T Consensus 83 ~~~l~ini~~--~~l~~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G--~~l~ld~~g~~~ 157 (240)
T cd01948 83 DLRLSVNLSA--RQLRDPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALG--VRIALDDFGTGY 157 (240)
T ss_pred CeEEEEECCH--HHhCCcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCC--CeEEEeCCCCcH
Confidence 3445555532 12223445677788888887764 2333333322 34556889999999999 5677777643
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccCccccCccc-------cchhHHHHHcCceEEE
Q 021629 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIA 251 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a 251 (310)
..+..+.. ++|+++-+..+.+..-..+ ..++..|+.+|+.+++
T Consensus 158 ~~~~~l~~------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 207 (240)
T cd01948 158 SSLSYLKR------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVA 207 (240)
T ss_pred hhHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEE
Confidence 22333321 4677776666655432210 1478899999999988
No 218
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.21 E-value=3.5e+02 Score=25.21 Aligned_cols=134 Identities=18% Similarity=0.126 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021629 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (310)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (310)
+-.+.+..+++.|-.+|=...|.|+ -++.+.++..+. ..+...-| ......+...+.+..
T Consensus 110 ~g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~yr------p~~np~ld~~i~~~R 169 (308)
T COG1560 110 EGLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMYR------PPKNPLLDWLITRGR 169 (308)
T ss_pred cCHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEec------CCCCHHHHHHHHHHH
Confidence 4456788888888888888888887 778888887664 23322222 355677888899999
Q ss_pred HhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCc-c
Q 021629 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-E 234 (310)
Q Consensus 156 ~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~ 234 (310)
.+.|...++- ..+-+..|-+..++|.+ +|+-.. +- . .+=..+-++| +.... -
T Consensus 170 ~r~~~~~~~~----------~~~~ir~li~~Lk~G~~--v~~lpD---qd-----~-----~~~~~vfvpF--Fg~~a~T 222 (308)
T COG1560 170 ERFGGRLLPR----------KGEGIRQLIKALKQGEA--VGYLPD---QD-----Y-----GPGESVFVPF--FGVPAAT 222 (308)
T ss_pred HhcCCcccCC----------CchhHHHHHHHHhcCCe--EEEecC---cc-----c-----CCCCCeEecc--CCCcccc
Confidence 9999876651 11444555555556633 344331 10 0 0000111111 11111 1
Q ss_pred ccchhHHHHHcCceEEEccccc
Q 021629 235 ENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 235 ~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
..+.-..+++.|..|+...+.-
T Consensus 223 ~t~~~~LA~~~~a~vip~~~~r 244 (308)
T COG1560 223 TTGPAKLARLTGAAVVPVFPVR 244 (308)
T ss_pred cchHHHHHHHhCCCEEEEEEEE
Confidence 1256777888888888776664
No 219
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=36.19 E-value=1.5e+02 Score=26.61 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecC----CHHHHHHHHHHHHhcCCCeee
Q 021629 148 LAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~----~~~~l~~~~~~~~~~~~~~~~ 221 (310)
...+++.|+-.+ +|||++-+-|-.. ++.+-+-+.++-+++-|---+.|=.-+ ....+.+.++.++. +.|++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~--lGf~~ 100 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKE--LGFDA 100 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHH--CT-SE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHH--cCCCE
Confidence 356777888888 7999999998655 333333333344444444333331111 01234444444544 34666
Q ss_pred eeeccCccccCccc-cchhHHHHHcCceEEE
Q 021629 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (310)
Q Consensus 222 ~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a 251 (310)
+.+.=..+.-..++ ..+++.+++.|..+++
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 66655555544332 2477777777777655
No 220
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.96 E-value=3.2e+02 Score=25.64 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccce---------EEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC---CHHHHHH
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRN 207 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl---------~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~---~~~~l~~ 207 (310)
+.++.+.+.+-++. |.+.|+++|.+ -+-..+...+..+.++.+.+. ....+...+... +.+.++.
T Consensus 20 ~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~--~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV--VKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh--CCCCEEEEEeccCcccHHHHHH
Q ss_pred HHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEc
Q 021629 208 AYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (310)
Q Consensus 208 ~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (310)
+.+. .++++.+..+.-+...... .+++++++|+.+...
T Consensus 97 a~~~------gvd~iri~~~~~e~~~~~~-~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA------GVRVVRVATHCTEADVSEQ-HIGLARELGMDTVGF 134 (337)
T ss_pred HHHc------CCCEEEEEEecchHHHHHH-HHHHHHHCCCeEEEE
No 221
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=35.90 E-value=3.8e+02 Score=25.21 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcC
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G 190 (310)
.+.+.|.+.++.. ...|..++.+..-+.|+ .+.+.+.+.++.++++.
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-LPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-CCHHHHHHHHHHHHHHC
Confidence 4677887777654 56788888887666664 46677888888888875
No 222
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=35.82 E-value=2.6e+02 Score=23.45 Aligned_cols=79 Identities=11% Similarity=-0.077 Sum_probs=49.0
Q ss_pred HHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcC
Q 021629 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G 190 (310)
+.+|+||++.... -|.|..++++ .-++..+...+.++.+. ...+-+-.-..+...+++.++.+.+
T Consensus 35 ~~~a~~L~~~~~~--~D~VL~Spa~----------Ra~QTae~v~~~~~~~~-~~~~~~l~p~~d~~~~l~~l~~~~d-- 99 (163)
T COG2062 35 ELVAAWLAGQGVE--PDLVLVSPAV----------RARQTAEIVAEHLGEKK-VEVFEELLPNGDPGTVLDYLEALGD-- 99 (163)
T ss_pred HHHHHHHHhcCCC--CCEEEeChhH----------HHHHHHHHHHHhhCccc-ceeccccCCCCCHHHHHHHHHHhcc--
Confidence 4688999988753 2556666666 24455666666777321 1211111111356777777777777
Q ss_pred cccEEEeecCCHHH
Q 021629 191 LVKAVGVSNYSEKR 204 (310)
Q Consensus 191 ~ir~iGvS~~~~~~ 204 (310)
-+..+.+-.|++..
T Consensus 100 ~v~~vllVgH~P~l 113 (163)
T COG2062 100 GVGSVLLVGHNPLL 113 (163)
T ss_pred cCceEEEECCCccH
Confidence 58899999998753
No 223
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=35.74 E-value=1.8e+02 Score=29.12 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir 193 (310)
+...+.+.+.+++||+++ |.+. .--++.-.+.+.+.+.+|+++|.|-
T Consensus 73 ~~~~~~~~~~~~~l~i~~-d~~~-~t~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 73 DKYHEEHKEDFKKLGISY-DLFT-RTTSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHHHHHHHHHHHHcCCcC-CCCc-CCCCHHHHHHHHHHHHHHHHCCCeE
Confidence 455777899999999974 7421 1111122567889999999999875
No 224
>PRK05985 cytosine deaminase; Provisional
Probab=35.42 E-value=3.9e+02 Score=25.24 Aligned_cols=168 Identities=12% Similarity=0.001 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHCCCCeE----ECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGITFF----DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~----DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
..+...+..++..|++++ |.-+.++. . +-+.+-++.+.+.. +-.+-+..-... ...+.......
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~-~------~~~~~~~~~~~~~~---~~~~~~v~~~~~--g~~~~~~~~~l 165 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRSHVDVDPDAGL-R------HLEAVLAARETLRG---LIDIQIVAFPQS--GVLSRPGTAEL 165 (391)
T ss_pred HHHHHHHHHHHhcCcceEEeeEccCCCccc-c------hHHHHHHHHHHhhC---cccEEEEeccCc--cccCCcCHHHH
Confidence 456777899999999987 32222221 1 12233344444321 122223322211 11121112344
Q ss_pred HHHHHHhhCCCccceEEe---ecCCCCChHHHHHHHHHHHHcCcccEEEeecCC---HHHHHHHHHHHHhcCCCeeeeee
Q 021629 151 LKDSLFRLGLSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLASNQV 224 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~l---H~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~~~~~~q~ 224 (310)
+++.|+.- . |+... |.++....+.+-+.++...+.|+.-.+=+.... .+.+.++.+.....+..-.+.-.
T Consensus 166 l~~~l~~g-~---~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~ 241 (391)
T PRK05985 166 LDAALRAG-A---DVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVS 241 (391)
T ss_pred HHHHHHcC-C---CEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehh
Confidence 55555532 2 32222 223322234444445666777765544443322 24555555544444432111111
Q ss_pred ccC-ccccCccc-cchhHHHHHcCceEEEccccccc
Q 021629 225 NYS-LIYRKPEE-NGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 225 ~~n-~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
... +-....++ ..+++.+++.|+.++.-.|+..|
T Consensus 242 H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~~~ 277 (391)
T PRK05985 242 HAFCLGDLPEREVDRLAERLAEAGVAIMTNAPGSVP 277 (391)
T ss_pred hhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 111 11111111 13678888899888654454443
No 225
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.37 E-value=1.7e+02 Score=28.52 Aligned_cols=109 Identities=8% Similarity=0.022 Sum_probs=61.4
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
|+-|-++|+....+.+.+=++|.|-+-..-.+-+.+.+.+.+++-... ..-+.++.++-|+... .+.++++|-
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 777777777654333345677777664311234455554444322111 1136788899887732 334444442
Q ss_pred -HHH--------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 185 -DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 185 -~L~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
.+. +.++|.-||-++.++..+.++.+.++..|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 222 145688888777665666777666777776653
No 226
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=35.36 E-value=24 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=28.1
Q ss_pred ecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccc
Q 021629 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (310)
Q Consensus 198 S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~p 254 (310)
+.++.+.++++++. -.++++|+...-+--=.+-..+.+.|+++||.++..+.
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 34556666666543 23566666544331111111377788888888888775
No 227
>PRK01060 endonuclease IV; Provisional
Probab=35.19 E-value=2.8e+02 Score=24.66 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=32.6
Q ss_pred EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccC-c--cccCc----cccchhHHHHHcCce---EEEcccc
Q 021629 194 AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS-L--IYRKP----EENGVKAACDELGIT---LIAYCPI 255 (310)
Q Consensus 194 ~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n-~--~~~~~----~~~~~l~~~~~~gi~---v~a~~pl 255 (310)
.+|+-+.....++++++.+... .++.+|+... + +.... +-..+.+.++++|+. +.+..|+
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~--G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~ 72 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEI--GANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPY 72 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHc--CCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecce
Confidence 4666655444466666665543 4666666432 1 11111 011367788899998 5555554
No 228
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.19 E-value=3.1e+02 Score=23.98 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCC-CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS-RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
++++...+.+.+.++|..|+=|+..|+. |-+ ...-+.+-+.++ ++ +..|... .-.+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat---~~dv~~m~~~v~--------~~--v~IKaaG--Girt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGAT---VEDVRLMRNTVG--------DT--IGVKASG--GVRTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC---HHHHHHHHHHhc--------cC--CeEEEeC--CCCCHHHHHHHH
Confidence 3467778999999999999999988873 322 000122333332 22 3344432 124788888889
Q ss_pred HHHHHhhCCCc
Q 021629 152 KDSLFRLGLSS 162 (310)
Q Consensus 152 ~~sL~~L~~d~ 162 (310)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999865
No 229
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=35.18 E-value=28 Score=21.17 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCCccccc
Q 021629 289 LLNRIKELGENYSKTSTQSL 308 (310)
Q Consensus 289 ~~~~l~~iA~~~g~s~~qvA 308 (310)
..+.|.++|++.|.|.+++.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 44589999999999988763
No 230
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.16 E-value=2.5e+02 Score=23.03 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHHHHHHHHH-HCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021629 76 AAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (310)
Q Consensus 76 ~~~~~l~~A~-~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (310)
...+++..++ +.|+..+.+.-.--. |+.+-.++.+.. +++..+-. .-.....-..+-+.
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~dv------~vIgvSsl-----~g~h~~l~~~lve~ 86 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEEDV------DVIGVSSL-----DGGHLTLVPGLVEA 86 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcCC------CEEEEEec-----cchHHHHHHHHHHH
Confidence 3445777777 589988876655443 888888887643 45544444 23456677788888
Q ss_pred HHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHH
Q 021629 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~ 209 (310)
|+..|.+ |++.+-... .+.++ +.+|++.|--+.++-.+--.+.+..+.
T Consensus 87 lre~G~~--~i~v~~GGv-ip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~ 134 (143)
T COG2185 87 LREAGVE--DILVVVGGV-IPPGD----YQELKEMGVDRIFGPGTPIEEALSDLL 134 (143)
T ss_pred HHHhCCc--ceEEeecCc-cCchh----HHHHHHhCcceeeCCCCCHHHHHHHHH
Confidence 9999988 444343322 22222 677888898888887654334444443
No 231
>PRK12928 lipoyl synthase; Provisional
Probab=35.13 E-value=2.1e+02 Score=26.29 Aligned_cols=165 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEC----CcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDT----AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~Dt----A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (310)
.+.++..+.++.+.+.|++++-. -+.+.++. -..+.+.++... ...-.+..++ .+++.+
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g-------~~~~~ell~~Ik----~~~p~~~I~~------ltp~~~ 149 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGG-------AAHFVATIAAIR----ARNPGTGIEV------LTPDFW 149 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccC-------HHHHHHHHHHHH----hcCCCCEEEE------eccccc
Q ss_pred HHHHHHHHHhhCCCccceEEe---------ecCCC-CChHHHHHHHHHHHHcC---cccEEEeecCCHHHHHHHHHHHHh
Q 021629 148 LAALKDSLFRLGLSSVELYQL---------HWAGI-WGNEGFIDGLGDAVEQG---LVKAVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~l---------H~pd~-~~~~~~~~~L~~L~~~G---~ir~iGvS~~~~~~l~~~~~~~~~ 214 (310)
.+ .++.|+.|.-...|++.. ..... ...++.++.++.+++.| .++.-.+-.+ .+..++..+.++.
T Consensus 150 ~~-~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~ 227 (290)
T PRK12928 150 GG-QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRD 227 (290)
T ss_pred cC-CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHH
Q ss_pred cC-CCeeeeee-ccCc----------cccCccccchhHHHHHcCceEEEcccc
Q 021629 215 RG-IPLASNQV-NYSL----------IYRKPEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 215 ~~-~~~~~~q~-~~n~----------~~~~~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
.. +.++.+.+ +|.. +....+...+-+.+.+.|...++-+||
T Consensus 228 Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 228 LRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred HHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 232
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.12 E-value=1.5e+02 Score=24.40 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=38.6
Q ss_pred ccEEEeecCC--HHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccccccc
Q 021629 192 VKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (310)
Q Consensus 192 ir~iGvS~~~--~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L 260 (310)
+.-+|+..|+ ...+..+... ..|+++ |....+.++ ++++.+-++++.++.-|.+.++.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d-----~GfeVi---~~g~~~tp~--e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALAD-----AGFEVI---NLGLFQTPE--EAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred EeccCccccccchHHHHHHHHh-----CCceEE---ecCCcCCHH--HHHHHHHhcCCCEEEEEeccchHH
Confidence 3456777774 3555555433 346653 444555655 588888899999999988887643
No 233
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=35.11 E-value=75 Score=25.32 Aligned_cols=61 Identities=25% Similarity=0.385 Sum_probs=36.8
Q ss_pred EEEeec---CCHHHHHHHHHH-HHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcccc
Q 021629 194 AVGVSN---YSEKRLRNAYEK-LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 194 ~iGvS~---~~~~~l~~~~~~-~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
.+|+.. .+.+.+.++++. ++..++.+..+-.--++-... .+.++++++++.|+.+..|++=
T Consensus 5 ~vGIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~-~E~~L~~~A~~lg~pl~~~~~~ 69 (126)
T PRK07027 5 ALGIGCRRGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKA-DEAGLLALCARHGWPLRAFSAA 69 (126)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhc-CCHHHHHHHHHhCCCeEEeCHH
Confidence 455543 466666666554 444555444433333333333 3347999999999999988543
No 234
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.04 E-value=3.8e+02 Score=25.23 Aligned_cols=93 Identities=6% Similarity=-0.001 Sum_probs=61.0
Q ss_pred eEEeecCCC------------CChHHHHHHHHHHHHcCc----ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~L~~~G~----ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
.+.||.++. ++.+++++++.+..++.. |+++=+. |.+.++++++.+.++. ....++-++|
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~--~~~~VnLIPy 283 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRG--LVSHVNLIPF 283 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 567787765 245788999987766643 4555555 4567778888777654 3466777899
Q ss_pred CccccC----cccc---chhHHHHHcCceEEEcccccccc
Q 021629 227 SLIYRK----PEEN---GVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 227 n~~~~~----~~~~---~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
|++... +.+. .+.+..+++|+.+......+..+
T Consensus 284 np~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~di 323 (343)
T PRK14468 284 NPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGRDV 323 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 986532 1111 24556777899999887776543
No 235
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=34.97 E-value=2.5e+02 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHHcCcc--cEEEeecCCHHHHH
Q 021629 181 DGLGDAVEQGLV--KAVGVSNYSEKRLR 206 (310)
Q Consensus 181 ~~L~~L~~~G~i--r~iGvS~~~~~~l~ 206 (310)
+.|..|++.|.- -+||+=+++.+.++
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L~ 145 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIRE 145 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHHH
Confidence 455557777863 56888777766553
No 236
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=34.92 E-value=3e+02 Score=23.70 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHCCCCeEECC----------cCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCC
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTA----------EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRL 142 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~ 142 (310)
++++..+..+.+.++|+..+|.= +.||...- +.-+.+-+.++...... .+-|..|+... +..
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~----~~~~~~~eii~~v~~~~---~~~v~vk~r~~-~~~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALL----KDPELVAEIVRAVREAV---PIPVTVKIRLG-WDD 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhc----CCHHHHHHHHHHHHHhc---CCCEEEEEeec-cCC
Confidence 34777788888888999988842 23442110 11445555555443211 24466666321 111
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHH
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~ 209 (310)
. +...+-+ +.|..+|+ |.+.+|.... ......|+.+.++++.-.+.-++.... +.+++.+++
T Consensus 137 ~-~~~~~~~-~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l 202 (231)
T cd02801 137 E-EETLELA-KALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCL 202 (231)
T ss_pred c-hHHHHHH-HHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHH
Confidence 1 1222222 23445564 6667776532 111223555566666555555555554 455555554
No 237
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=34.24 E-value=2.9e+02 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=25.9
Q ss_pred ccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHH
Q 021629 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (310)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 205 (310)
.+|.++||..++ .+.++.+.+......++.||++++....+
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 368899998652 23344443333346789999998755443
No 238
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=34.18 E-value=3.3e+02 Score=24.02 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=44.9
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeec---CCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchh
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVK 239 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l 239 (310)
..++..|.. |..|.+-..--.+..+|+++ .++.++.++.+..+..+++..+.+...+. .-+-
T Consensus 151 ~~~v~~h~~--------~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~ 215 (256)
T PF01297_consen 151 RPVVVYHDA--------FQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAE 215 (256)
T ss_dssp GEEEEEEST--------THHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHH
T ss_pred CeEEEEChH--------HHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHH
Confidence 456666642 33443333222233344444 47788999988888888776665433322 1244
Q ss_pred HHHHHcCceEEEcccccc
Q 021629 240 AACDELGITLIAYCPIAQ 257 (310)
Q Consensus 240 ~~~~~~gi~v~a~~pl~~ 257 (310)
..+++.|+.++.-.|++.
T Consensus 216 ~la~~~g~~vv~ld~l~~ 233 (256)
T PF01297_consen 216 ALAKETGVKVVYLDPLGG 233 (256)
T ss_dssp HHHHCCT-EEEESSTTCS
T ss_pred HHHHHcCCcEEEeCCCcC
Confidence 457888999999888843
No 239
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.07 E-value=3.3e+02 Score=23.96 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCc-ccEEEee---------------------cCCH
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVS---------------------NYSE 202 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~-ir~iGvS---------------------~~~~ 202 (310)
+.+++.+-+.-+.-+.--+-.+..-+|+ ..++...|.-|..-|- |-.+|+- +.+.
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~---v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl 79 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPD---VSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTL 79 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCc---HHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcH
Q ss_pred HHHHHHHHHHHhcCCC-eeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchH
Q 021629 203 KRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~ 281 (310)
+.+.+....++.-|+. |.+.+..||++.+..+++ .+..+++.| +.|++. -.+.++
T Consensus 80 ~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~-~iq~ak~aG---------anGfii--------------vDlPpE 135 (268)
T KOG4175|consen 80 NSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN-YIQVAKNAG---------ANGFII--------------VDLPPE 135 (268)
T ss_pred HHHHHHHHHhcccCcccceeeeecccHHHhhhHHH-HHHHHHhcC---------CCceEe--------------ccCChH
Q ss_pred hHhhHHHHHHHHHHHHHhcCCCc
Q 021629 282 YLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 282 ~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
-.. .++.-|+++|++.
T Consensus 136 Ea~-------~~Rne~~k~gisl 151 (268)
T KOG4175|consen 136 EAE-------TLRNEARKHGISL 151 (268)
T ss_pred HHH-------HHHHHHHhcCceE
No 240
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=33.80 E-value=1.9e+02 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC---CccceEEeecCCC--CChHHHHHHHHHHHHc
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~ 189 (310)
|=-+.|+-|++. ....+..+++.+.+..+.+.. ...|++++..+.. .+..++.+.|.+|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 556777778653 246677888888888877643 3579999998876 5677888888777654
No 241
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=33.69 E-value=2.1e+02 Score=21.84 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEeecCCC--CChHHHHHHHHHHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAV 187 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~pd~--~~~~~~~~~L~~L~ 187 (310)
|=-+.|+-|+|. ...+..+++.+.+..+... ....|++++-.+.. .+..++.+.|.+|.
T Consensus 42 RlGi~vsKK~g~---AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 42 RVGLSVSKKVKN---AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred EEEEEEecccCc---hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 556888888763 4667777777777776542 23589999998875 56777777777663
No 242
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=33.65 E-value=2.5e+02 Score=28.04 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir 193 (310)
+...+.+++.+++||++ .|.+. ..-++.-.+.+.+.+++|+++|.|.
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 45667889999999997 57432 1111122456888899999999984
No 243
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=33.56 E-value=2.3e+02 Score=22.25 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=44.1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC------ccceEEeecCCC--CChHHHHHHHHHHH
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS------SVELYQLHWAGI--WGNEGFIDGLGDAV 187 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d------~iDl~~lH~pd~--~~~~~~~~~L~~L~ 187 (310)
|=-+.|+-|++. ....+..+++.+.++.+.+..+ -.|++++-.+.. .+..++-+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 557899999653 2466888999999988887542 478999998865 45667777766654
No 244
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.51 E-value=4.2e+02 Score=25.07 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=60.4
Q ss_pred ccce-EEeecCCC------------CChHHHHHHHHHHH-HcCc---ccEEEeecC--CHHHHHHHHHHHHhcCCCeeee
Q 021629 162 SVEL-YQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 162 ~iDl-~~lH~pd~------------~~~~~~~~~L~~L~-~~G~---ir~iGvS~~--~~~~l~~~~~~~~~~~~~~~~~ 222 (310)
++|+ +-||.+++ .+.+++.+++.+.. +.|+ |+++=+..+ +.+.++++.+.++.......++
T Consensus 208 ~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~Vn 287 (348)
T PRK14467 208 EVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVN 287 (348)
T ss_pred CeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEE
Confidence 3444 56888765 13456667766554 3443 555555544 5788888877765432235577
Q ss_pred eeccCccccC----cccc---chhHHHHHcCceEEEcccccccc
Q 021629 223 QVNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 223 q~~~n~~~~~----~~~~---~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
-++||++... +... .+.+..+++|+.+......+..+
T Consensus 288 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 331 (348)
T PRK14467 288 LIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDI 331 (348)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 7899986532 1111 35566778899999988877544
No 245
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=33.49 E-value=2.9e+02 Score=24.27 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHHHCCCCeEEC-CcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCC--C---CCCCHHHHHHHHHHH
Q 021629 81 FDTSLDNGITFFDT-AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL--P---WRLGRQSVLAALKDS 154 (310)
Q Consensus 81 l~~A~~~Gin~~Dt-A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~--~---~~~~~~~i~~~l~~s 154 (310)
|....+. +|.++. +.+|... +++.+.+|.+..+ +++..+.|+... + .....+.+.+.+-+.
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~P-------~~~t~~~W~~~~p-----~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~ 78 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRIP-------SPETVARWREQTP-----EGFRFSVKAPQLITHERRLRDCAEELWRRFLEA 78 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSSS--------HHHHHHHHCTS------TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHH
T ss_pred HHHHHHh-CCeEEECcccCCCC-------CHHHHHHHHhhCC-----CCeEEEEeccHHheecccccccHHHHHHHHHHH
Confidence 4443333 555553 4567663 3889999988776 789999999753 1 112355664666669
Q ss_pred HHhhCCCccceEEeecCCC-CChHHHHHHHHHHHH
Q 021629 155 LFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVE 188 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~ 188 (310)
++-|+ +.+..+++..|-. ....+.++.|..+.+
T Consensus 79 ~~~L~-~klg~iL~Q~Ppsf~~~~~~~~~l~~~l~ 112 (230)
T PF01904_consen 79 LEPLG-EKLGPILFQFPPSFRFTPENLERLDAFLD 112 (230)
T ss_dssp CHHHH-T-EEEEEEE--TT--S-HHHHHHHHHHHH
T ss_pred HHHHh-hcceEEEEEcCCCcCCCHHHHHHHHHHHh
Confidence 99998 8999999999865 233445554444443
No 246
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.45 E-value=81 Score=25.31 Aligned_cols=42 Identities=0% Similarity=-0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCccceEEeecCCCC--ChHHHHHHHHHHHHc
Q 021629 148 LAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQ 189 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lH~pd~~--~~~~~~~~L~~L~~~ 189 (310)
|..+++.|+.+....+|+++++..|.. ...++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 344555566665566777777777662 344555555656555
No 247
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=33.31 E-value=2.8e+02 Score=23.57 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCcccEEEeecCCHH--HHHHHHHHHHhcCCCe
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK--RLRNAYEKLKKRGIPL 219 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~--~l~~~~~~~~~~~~~~ 219 (310)
..+...+...++..+... +-+.+--.+. .......+.+..|++.| -.+.+.+|+.. .+..+. . .+|
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G--~~ialddfg~~~~~~~~l~-~-----l~~ 169 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELG--VRIALDDFGTGYSSLSYLK-R-----LPV 169 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCC--CEEEEeCCCCcHHHHHHHH-h-----CCC
Confidence 345566777777766542 3333333332 23445568999999999 45677777432 223222 1 467
Q ss_pred eeeeeccCccccCccc-------cchhHHHHHcCceEEE
Q 021629 220 ASNQVNYSLIYRKPEE-------NGVKAACDELGITLIA 251 (310)
Q Consensus 220 ~~~q~~~n~~~~~~~~-------~~~l~~~~~~gi~v~a 251 (310)
+++-+..+++..-..+ ..++..|+..|+.+++
T Consensus 170 d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 170 DLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred CeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 7776665554332111 1468899999999988
No 248
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=33.18 E-value=1.9e+02 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=7.8
Q ss_pred HHHHHhhCCCccceE
Q 021629 152 KDSLFRLGLSSVELY 166 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~ 166 (310)
-..|.++|+++|++-
T Consensus 27 a~~L~~~Gv~~iE~G 41 (275)
T cd07937 27 AEALDEAGFFSLEVW 41 (275)
T ss_pred HHHHHHcCCCEEEcc
Confidence 445555555555544
No 249
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.95 E-value=4.6e+02 Score=25.36 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=54.9
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC------hHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~------~~~~~~~ 182 (310)
|+-|-++|++...+.+. +-++|.|-+...--+-+.+.+.+.++ ++++ ++++.+|-|.... .....++
T Consensus 83 ~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~---~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~a 156 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKAS---KELG---IPVVPVRCEGFRGVSQSLGHHIANDA 156 (421)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHH---HhhC---CCEEEEeCCCccCCcccHHHHHHHHH
Confidence 77778888776554433 55777777642112234444433332 2343 5888999887632 2222222
Q ss_pred HH-HHH--------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 183 LG-DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 183 L~-~L~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+. .+. +.+.|.-||-.++. ..+.++.+.++..|+++.
T Consensus 157 i~~~l~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gi~v~ 202 (421)
T cd01976 157 IRDHILGKRNEFEPTPYDVNIIGDYNIG-GDAWASRILLEEMGLRVV 202 (421)
T ss_pred HHHHHhccCCccCCCCCeEEEEecCCCC-ccHHHHHHHHHHcCCeEE
Confidence 22 222 13668888866653 233444444565665543
No 250
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=32.92 E-value=2.1e+02 Score=22.48 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=42.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC--CccceEEeecCCC--CChHHHHHHHHHHHHc
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~ 189 (310)
|=-+.|+-|++. ....+..+++.+.+..+.... .-.|++++..+.. .+..++.+.|.+|.+.
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 556888888642 246677788888888765432 3469999999865 4566777776666543
No 251
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=32.88 E-value=4.2e+02 Score=24.91 Aligned_cols=71 Identities=13% Similarity=-0.048 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHH
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (310)
.+++.+.-.+-.+-..+.+++++|-|=.|-.... .++.+++++.++|.++|.+-.+ +|+-++...+++.+.
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHhc
Confidence 4678887777778888888998887766655433 4588999999999999987633 566666666666443
No 252
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=32.84 E-value=4.3e+02 Score=24.97 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHCC-CCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 71 DRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~G-in~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
-.+.++..+.-+.|.+.| .+|...|..++++.. -+.+-++++..... -.+-+..-+| ..+.+.
T Consensus 83 l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~------~~~i~~~v~~Vk~~---~~le~c~slG----~l~~eq--- 146 (335)
T COG0502 83 LMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRD------MEEVVEAIKAVKEE---LGLEVCASLG----MLTEEQ--- 146 (335)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEEeccCCCcc------HHHHHHHHHHHHHh---cCcHHhhccC----CCCHHH---
Confidence 345677777777888999 888888888874333 33444555543211 1233333343 233443
Q ss_pred HHHHHHHhhCCCccceEEeecCCC-----------CChHHHHHHHHHHHHcCccc----EEEeecCCHHHHHHHHHHHHh
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI-----------WGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~-----------~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~l~~~~~~~~~ 214 (310)
-+-|+..|+|+ +-|+.+. ...++-++.++.+++.|.=- -+|+.+-..+.+..+...++
T Consensus 147 --~~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~- 219 (335)
T COG0502 147 --AEKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELAN- 219 (335)
T ss_pred --HHHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHh-
Confidence 33456667665 3464432 24689999999999998632 24555655666777766544
Q ss_pred cCCCeeeeeeccCccccC
Q 021629 215 RGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~ 232 (310)
.+. ...++.|++.+.
T Consensus 220 --l~~-pdsVPIn~l~P~ 234 (335)
T COG0502 220 --LPT-PDSVPINFLNPI 234 (335)
T ss_pred --CCC-CCeeeeeeecCC
Confidence 221 444566666654
No 253
>COG0218 Predicted GTPase [General function prediction only]
Probab=32.67 E-value=3.4e+02 Score=23.67 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHC------CCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHH
Q 021629 74 MKAAKAAFDTSLDN------GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (310)
Q Consensus 74 ~~~~~~~l~~A~~~------Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (310)
.+....++...++. .+-++|.-..- ...+..+=+||.... ..=+++.||.- .......
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~--------~~~D~em~~~l~~~~----i~~~vv~tK~D----Ki~~~~~ 153 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPP--------KDLDREMIEFLLELG----IPVIVVLTKAD----KLKKSER 153 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCC--------cHHHHHHHHHHHHcC----CCeEEEEEccc----cCChhHH
Confidence 46667777777654 34466643222 123667779999887 46789999993 4667778
Q ss_pred HHHHHHHHHhhCCCccce--EEeec-CCCCChHHHHHHHHHHHHc
Q 021629 148 LAALKDSLFRLGLSSVEL--YQLHW-AGIWGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl--~~lH~-pd~~~~~~~~~~L~~L~~~ 189 (310)
.+.+....+.|+.+..|- +.+.. ....+.++.++.+.+....
T Consensus 154 ~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 154 NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888899999998877775 23322 3336788888888776543
No 254
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.42 E-value=2.6e+02 Score=27.76 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCcccEEEeec----CCHHHHHHHHHHHHhcC-CCeee-eeeccCccccCccccchhHHHHHcCce
Q 021629 175 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLAS-NQVNYSLIYRKPEENGVKAACDELGIT 248 (310)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~iGvS~----~~~~~l~~~~~~~~~~~-~~~~~-~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (310)
+++.+++.++.|+++..++.+-+.. .+.+.+.++.+.....+ .++.. .+...+.+.+.. ++++..++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~---ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDA---DILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCH---HHHHHHHHhCCc
Confidence 5789999999998876688887763 35566667766554443 33221 233444333322 489999999987
Q ss_pred EEEc
Q 021629 249 LIAY 252 (310)
Q Consensus 249 v~a~ 252 (310)
.+..
T Consensus 300 ~v~i 303 (497)
T TIGR02026 300 HISL 303 (497)
T ss_pred EEEE
Confidence 6654
No 255
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=32.41 E-value=3.8e+02 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHc--CcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcc
Q 021629 176 NEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 176 ~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
..++++.++.+++. |.=-.+|+||.+.-. | .|..-+.-++..|.+.|+..-...
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfgl--------------p----------~r~~in~~fl~~a~~~Gl~~aI~n 228 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNISFGL--------------P----------NRKLINRAFLVMAMGAGMDSAILD 228 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCccCC--------------c----------chHHHHHHHHHHHHHcCCCEEeeC
Confidence 45678888888887 888889999864211 0 011111136777777777777666
Q ss_pred ccccc
Q 021629 254 PIAQG 258 (310)
Q Consensus 254 pl~~G 258 (310)
|....
T Consensus 229 p~~~~ 233 (261)
T PRK07535 229 PLDRD 233 (261)
T ss_pred CCCHH
Confidence 66543
No 256
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=32.12 E-value=2.6e+02 Score=22.91 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=42.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEeecCCC--CChHHHHHHHHHHHHc
Q 021629 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (310)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~ 189 (310)
|=-+.|+-|++. ....+..+++.+.+..+.+. +...|++++..+.. .+..++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 556888888753 24567777777777777542 23449999988765 5567777777777655
No 257
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=32.06 E-value=30 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.8
Q ss_pred cccceeecCCCCcccccceeccc
Q 021629 34 TAEDKVKLGGSDLKVTKLGVGAW 56 (310)
Q Consensus 34 ~~m~~~~Lg~tg~~vs~lglG~~ 56 (310)
..-..+.|+++|+.||.+-+|+.
T Consensus 13 Pfs~~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 13 PFSLGRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred CccccccccccccCCceeeecch
Confidence 34456789999999999998886
No 258
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.05 E-value=3.1e+02 Score=26.20 Aligned_cols=85 Identities=9% Similarity=-0.023 Sum_probs=56.2
Q ss_pred eEEeecCCCC-ChHHHHHHHHHHHHc------CcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccc
Q 021629 165 LYQLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (310)
Q Consensus 165 l~~lH~pd~~-~~~~~~~~L~~L~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (310)
++++..|-+. +.++-++.+.+|.+. +.=-..|-+.++.+.+.++++. -..+++|+..+-.-.=.+-..
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 4577776432 222457777778766 4555667777888888888655 347777777665332112224
Q ss_pred hhHHHHHcCceEEEccc
Q 021629 238 VKAACDELGITLIAYCP 254 (310)
Q Consensus 238 ~l~~~~~~gi~v~a~~p 254 (310)
+.+.|+.+||.++..+.
T Consensus 304 ia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 304 AVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHcCCcEEEeCC
Confidence 89999999999998654
No 259
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.98 E-value=96 Score=24.21 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcC
Q 021629 148 LAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G 190 (310)
+..+++.|+.+.....|.+++..++. -...++...++.|.+.|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 34455555555556677777777766 23445666666666554
No 260
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.98 E-value=2.4e+02 Score=25.58 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCC----CChHHHHHHHHHHHH--cCcc-cEEEeecCCHHHHHHHHHHHH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~----~~~~~~~~~L~~L~~--~G~i-r~iGvS~~~~~~l~~~~~~~~ 213 (310)
..+.+.+++-++..++.+|++ -+++-.-.. ...+|-.+.++..++ .|++ -.+|++..+.+...+..+.++
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~---gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVD---GLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCC---EEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHH
Confidence 467888888888888866764 444443211 345555444444443 3554 456888888877777777777
Q ss_pred hcCCCeeeeeeccCccccCccccchhHH----HHHc-CceEEEcc-ccccc
Q 021629 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDEL-GITLIAYC-PIAQG 258 (310)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~----~~~~-gi~v~a~~-pl~~G 258 (310)
..|..-.++..+|..- .. +.+++++ |+.- ++.++.|. |...|
T Consensus 94 ~~Gad~v~~~~P~y~~-~~--~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg 141 (288)
T cd00954 94 ELGYDAISAITPFYYK-FS--FEEIKDYYREIIAAAASLPMIIYHIPALTG 141 (288)
T ss_pred HcCCCEEEEeCCCCCC-CC--HHHHHHHHHHHHHhcCCCCEEEEeCccccC
Confidence 7776544444444322 12 2245554 5566 88999984 43334
No 261
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=31.95 E-value=4.2e+02 Score=24.58 Aligned_cols=128 Identities=11% Similarity=0.105 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCCeEEC---Cc-----CcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~Dt---A~-----~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~ 145 (310)
+++..+....+.+.|+..+|- .+ .||.|.+- -..-+.+.+.++...... .+++-|+.|+... ++ +.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~L--l~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATL--LKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SGE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHh--hcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cch
Confidence 466666777778899999982 21 24443110 011344445444432111 1247788887431 22 112
Q ss_pred HHHHHHHHHHHhhCCCccceEEeecCCC---CChHH-HHHHHHHHHHcCcccEEEeecC-CHHHHHHHHH
Q 021629 146 SVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEG-FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (310)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~~~~-~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~ 210 (310)
.. ..+-+.|+..| +|.+.+|.-.. +.... -|+.+.++++.=.|--||.... ++++++++++
T Consensus 149 ~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 149 RK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred HH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHh
Confidence 22 34445566666 57778896432 11111 3788888888877888888876 6777777754
No 262
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.92 E-value=3.8e+02 Score=24.06 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCC
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~ 173 (310)
.+.+...+.++...+ .-+|++-|--|-.
T Consensus 21 P~~~~~~~~~~~l~~----~Gad~iElGiPfs 48 (256)
T TIGR00262 21 PTLETSLEIIKTLIE----AGADALELGVPFS 48 (256)
T ss_pred CCHHHHHHHHHHHHH----cCCCEEEECCCCC
Confidence 345544444433322 3467777777754
No 263
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=31.74 E-value=1.2e+02 Score=23.83 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=31.3
Q ss_pred CHHHHHHHHHH-HHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccc
Q 021629 201 SEKRLRNAYEK-LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 201 ~~~~l~~~~~~-~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 256 (310)
+.+.+.++++. +...++.+..+-.--++-... ++.++++++++.|+.+..|++-.
T Consensus 13 ~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~-~E~~l~~~A~~l~~~~~~~~~ee 68 (121)
T PF01890_consen 13 PAEEIEEAIEQALAEAGLSPRSIAAIASIDIKA-DEPGLLELAEELGIPLRFFSAEE 68 (121)
T ss_dssp -HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS---HHHHHHHHHCTSEEEEE-HHH
T ss_pred CHHHHHHHHHHHHHHcCCChhhccEEEeccccC-CCHHHHHHHHHhCCCeEEECHHH
Confidence 55666666554 444555444444444443333 34479999999999999987643
No 264
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=31.74 E-value=2.7e+02 Score=28.50 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=43.4
Q ss_pred HhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEee-cCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 156 ~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
..+|.|++=+++.. +|...+.+.....+.+......+..|||- |-+++.+.++.+. ..++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 45899998887544 34434555523333332222357889985 7788888888655 57899999764
No 265
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=31.72 E-value=3.9e+02 Score=24.19 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=48.8
Q ss_pred HHHCCCCeEEC-CcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCC--CCCCCHH---HHHHHHHHHHHh
Q 021629 84 SLDNGITFFDT-AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL--PWRLGRQ---SVLAALKDSLFR 157 (310)
Q Consensus 84 A~~~Gin~~Dt-A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~--~~~~~~~---~i~~~l~~sL~~ 157 (310)
.+...+|.++. +.+|-. .+++.+-+|.+..+ +++..+.|+... ++....+ .+.+.+.+-+..
T Consensus 32 ~y~~~f~~VEiN~TFYa~-------p~~~t~~~W~~~~p-----~~FrFsvK~~~~iTH~~~l~~~~~~~~~~~~~~~~~ 99 (263)
T COG1801 32 YYASHFNTVEINSTFYAP-------PSPETVLRWAEETP-----DDFRFSVKAPRAITHQRRLKECDFELWEFFLEPLAP 99 (263)
T ss_pred HHhccCCEEEECCcccCC-------CCHHHHHHHHHhCC-----CCeEEEEEecccccchhhhccchHHHHHHHHHHHHh
Confidence 33455665542 234543 23888889998776 899999999642 2222222 344444555556
Q ss_pred hCCCccceEEeecCCC
Q 021629 158 LGLSSVELYQLHWAGI 173 (310)
Q Consensus 158 L~~d~iDl~~lH~pd~ 173 (310)
|+ +.+..+++..|-.
T Consensus 100 L~-~klg~il~Q~Pps 114 (263)
T COG1801 100 LG-ERLGPILFQLPPS 114 (263)
T ss_pred hh-cccceEEEecCCc
Confidence 77 4899999999865
No 266
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.67 E-value=4.2e+02 Score=25.87 Aligned_cols=104 Identities=21% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-----hHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-----~~~~~~~L~ 184 (310)
|+-|-++|++...+.+.+-++|.|-+...-.+.+.+.+.+.++ ++++ +.++.++.|.... .+.++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~---~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAA---EKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHH---HHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 7777787776654433466777777642112233343433333 2333 5788999887522 333444444
Q ss_pred HHH-H------------cCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 185 DAV-E------------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 185 ~L~-~------------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
++. . .+.|.-||-.+.. ..+.++.+.++..|+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gl~v~ 227 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVA-GEFWHVKPLLEKLGIRVL 227 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCc-ccHHHHHHHHHHcCCeEE
Confidence 332 1 3568888865532 223344444555555543
No 267
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=31.62 E-value=2.7e+02 Score=23.61 Aligned_cols=85 Identities=26% Similarity=0.326 Sum_probs=54.4
Q ss_pred HHHhhCCCc----cceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCcc
Q 021629 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (310)
Q Consensus 154 sL~~L~~d~----iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (310)
.|++.|+.- +|==++-|.++...+++.+.+.++++.| |+-+=+||-+...+..+.+. .++++.. .
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~---l~v~fi~-------~ 90 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK---LGVPFIY-------R 90 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh---cCCceee-------c
Confidence 445555431 3445666666667889999999999999 45566999998888877443 2222221 2
Q ss_pred ccCccccchhHHHHHcCceE
Q 021629 230 YRKPEENGVKAACDELGITL 249 (310)
Q Consensus 230 ~~~~~~~~~l~~~~~~gi~v 249 (310)
...|....+-.++++.++..
T Consensus 91 A~KP~~~~fr~Al~~m~l~~ 110 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLPP 110 (175)
T ss_pred ccCccHHHHHHHHHHcCCCh
Confidence 22333336788888887754
No 268
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=31.52 E-value=41 Score=24.64 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccc
Q 021629 284 RNLQPLLNRIKELGENYSKTSTQSL 308 (310)
Q Consensus 284 ~~~~~~~~~l~~iA~~~g~s~~qvA 308 (310)
+++.+.+.+|.++|++.|++..+++
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc 72 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELC 72 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4677888899999999999988875
No 269
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.43 E-value=2.6e+02 Score=24.58 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcC
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYG 99 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg 99 (310)
++++..++.+.+.+.|..|+=|+..|+
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~ 160 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFS 160 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 345556666666666666666666664
No 270
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=31.41 E-value=4.1e+02 Score=24.64 Aligned_cols=116 Identities=9% Similarity=0.016 Sum_probs=62.4
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC-CCCCCCCCHHHHHHHHHHHHH
Q 021629 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF-AALPWRLGRQSVLAALKDSLF 156 (310)
Q Consensus 78 ~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~-~~~~~~~~~~~i~~~l~~sL~ 156 (310)
.++...|...|+.++-++..+...+. .+.+.++++.. .--||..+. ....|.++++.. ++....
T Consensus 165 kd~~~Ia~a~g~~YVA~~~~~~~~~l------~~~i~~A~~~~------Gps~I~v~sPC~~~~~~~~~~~---~~~~kl 229 (299)
T PRK11865 165 KNMPLIMAAHGIPYVATASIGYPEDF------MEKVKKAKEVE------GPAYIQVLQPCPTGWGFPPEKT---IEIGRL 229 (299)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhCC------CCEEEEEECCCCCCCCCCHHHH---HHHHHH
Confidence 34556667789999998887743211 44444444322 334444444 333455565533 444444
Q ss_pred hhCCCccceEEeecCCC---CChHH-----HHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHH
Q 021629 157 RLGLSSVELYQLHWAGI---WGNEG-----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 157 ~L~~d~iDl~~lH~pd~---~~~~~-----~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~ 213 (310)
...+.|.-||-+..-.. ..+.. -...-+-|+.||+.+++ ++++++++.+..+
T Consensus 230 Avetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v~ 289 (299)
T PRK11865 230 AVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYID 289 (299)
T ss_pred HHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHHH
Confidence 44466666666553211 00000 11122447789998888 6777777766543
No 271
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=31.17 E-value=3.6e+02 Score=23.53 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHC-----CCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC
Q 021629 72 RKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~-----Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~ 135 (310)
.++++..+.++.+++. |+|---.+-.-.+ +..+...++.... |.-+||=++.
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~---------~~~m~~vl~~l~~---~gl~FvDS~T 127 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD---------REAMRWVLEVLKE---RGLFFVDSRT 127 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----------HHHHHHHHHHHHH---TT-EEEE-S-
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC---------HHHHHHHHHHHHH---cCCEEEeCCC
Confidence 4678999999999986 4443332222222 6666666655542 4667775655
No 272
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=30.96 E-value=2.7e+02 Score=23.70 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 021629 83 TSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS 162 (310)
Q Consensus 83 ~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~ 162 (310)
.+...|..++..+ +-|++.- |..+++.|.+.+ .++++.-=. .+.+++.+++.+...++.+.-.+
T Consensus 28 ~aR~l~~~~iNLG-fsG~~~l------e~~~a~~ia~~~-----a~~~~ld~~----~N~~~~~~~~~~~~fv~~iR~~h 91 (178)
T PF14606_consen 28 LARRLGLDVINLG-FSGNGKL------EPEVADLIAEID-----ADLIVLDCG----PNMSPEEFRERLDGFVKTIREAH 91 (178)
T ss_dssp HHHHHT-EEEEEE--TCCCS--------HHHHHHHHHS-------SEEEEEES----HHCCTTTHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCCeEeee-ecCcccc------CHHHHHHHhcCC-----CCEEEEEee----cCCCHHHHHHHHHHHHHHHHHhC
Q ss_pred --cceEEeecCCCCC--------------hHHHHHHHHHHHHcC
Q 021629 163 --VELYQLHWAGIWG--------------NEGFIDGLGDAVEQG 190 (310)
Q Consensus 163 --iDl~~lH~pd~~~--------------~~~~~~~L~~L~~~G 190 (310)
.-++++-.+.... .+.+-+++++|+++|
T Consensus 92 P~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g 135 (178)
T PF14606_consen 92 PDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEG 135 (178)
T ss_dssp SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcC
No 273
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.83 E-value=4.3e+02 Score=24.35 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcC
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYG 99 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg 99 (310)
+.+|.+...+.++..++.|++-|=..-..|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstG 53 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFG 53 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 457788889999999999988664443333
No 274
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=30.75 E-value=4.4e+02 Score=24.49 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 73 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
+.++..++++..-+ .|++.+--+- |.... .++..+-+.+........-+.+-|.||.. ...+..|.+.+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~----~~d~~L~~ll~~l~~i~~~~~iri~tr~~----~~~p~rit~el 195 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDPLM----AKDHRLDWLLNLLEQIPHLKRLRIHTRLP----VVIPDRITSGL 195 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--ccccc----CCchHHHHHHHHHHhCCCCcEEEEecCcc----eeeHHHhhHHH
Confidence 34566666665443 4777554332 22111 12333433332221110014566777763 23344566666
Q ss_pred HHHHHhhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCcccEEE-ee----cCCHHHHHHHHHHHHhcCC
Q 021629 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVG-VS----NYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G~ir~iG-vS----~~~~~~l~~~~~~~~~~~~ 217 (310)
-+.|+..+...+ +.+|.-.+ .-.+++.++++.|++.|..-.+= +- |.+.+.+.++.+.+...++
T Consensus 196 ~~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv 265 (321)
T TIGR03821 196 CDLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGV 265 (321)
T ss_pred HHHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 566666654332 23464222 23466788888888888421111 11 2355666666655544443
No 275
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=30.67 E-value=4.4e+02 Score=24.41 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=10.5
Q ss_pred chhHHHHHcCceEEE
Q 021629 237 GVKAACDELGITLIA 251 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a 251 (310)
..++.+++.|+.+.+
T Consensus 157 ~~i~~a~~~Gi~~~~ 171 (336)
T PRK06245 157 ETIENAGKLKIPFTT 171 (336)
T ss_pred HHHHHHHHcCCceee
Confidence 467778888887644
No 276
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.57 E-value=2.2e+02 Score=24.81 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEC
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDT 94 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~Dt 94 (310)
.+++.+.++++.|++.|+...|+
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 35688999999999998765543
No 277
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=30.52 E-value=4.1e+02 Score=24.07 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=14.1
Q ss_pred chhHHHHHcCceEEEccc
Q 021629 237 GVKAACDELGITLIAYCP 254 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~p 254 (310)
+....+++.|..|+....
T Consensus 214 g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 214 IASILARRYNALIIPVFI 231 (298)
T ss_pred hHHHHHHHHCCCEEEEEE
Confidence 567789999998876655
No 278
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=30.47 E-value=1.9e+02 Score=30.67 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CcccEEEeecCCHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNA 208 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~l~~~ 208 (310)
.+.+.+++-++...........-+|+|+..+... .+.+++|-+..++ ..+++|-++|.....+.-+
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 3456666666655433322345788888877543 3467777777777 5899999999754443333
No 279
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=30.43 E-value=3.1e+02 Score=25.66 Aligned_cols=97 Identities=7% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHc-CcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~-G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
+...+.++.|.-++ ++.++..|-.. ++.+.+|+++ +.=-..|-|-++.+.+.++++. -..+++|+..+
T Consensus 148 ~~Ai~~~~~L~e~~-~l~~iEqP~~~-----~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~ 216 (327)
T PRK02901 148 DEAVAAARALDADG-PLEYVEQPCAT-----VEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVA 216 (327)
T ss_pred HHHHHHHHHhhhcc-CceEEecCCCC-----HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcc
Q ss_pred ccccCccccchhHHHHHcCceEEEcccccccc
Q 021629 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (310)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 259 (310)
.+-.-.. +++.|+++||.++..+.+..++
T Consensus 217 ~~GGit~---~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 217 PLGGVRA---ALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred hhCCHHH---HHHHHHHcCCcEEEeCCcccHH
No 280
>PLN02444 HMP-P synthase
Probab=30.41 E-value=3.2e+02 Score=27.74 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=34.2
Q ss_pred ccCccccCccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHH--HHHHHHHHHHhcCC
Q 021629 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQP--LLNRIKELGENYSK 302 (310)
Q Consensus 225 ~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~l~~iA~~~g~ 302 (310)
.-|+++..-+ ++++.|++++|.+ +|+-|+=-|.+. ......+..+ .+.+|-+.|.++|+
T Consensus 355 kENPlYe~FD--~ileI~k~YDVtl----SLGDGLRPG~ia-------------DA~D~AQ~~EL~tLGELtkrA~e~gV 415 (642)
T PLN02444 355 KENFAYEHWD--DILDICNQYDIAL----SIGDGLRPGSIY-------------DANDTAQFAELLTQGELTRRAWEKDV 415 (642)
T ss_pred CcCchHHHHH--HHHHHHHHhCeee----eccCCcCCCccc-------------cCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455555433 5999999999998 566664322221 1111122332 34577778888875
No 281
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=30.16 E-value=51 Score=31.81 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCCcc
Q 021629 290 LNRIKELGENYSKTST 305 (310)
Q Consensus 290 ~~~l~~iA~~~g~s~~ 305 (310)
.+.|-+||++|.+|++
T Consensus 205 fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 205 FDYILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHHHHhCeeee
Confidence 3477788888887654
No 282
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=29.87 E-value=4.2e+02 Score=26.02 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=57.8
Q ss_pred HHHHHHHHhhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCC-ccceEEeecCCCC-----ChHHHHHH
Q 021629 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-SVELYQLHWAGIW-----GNEGFIDG 182 (310)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d-~iDl~~lH~pd~~-----~~~~~~~~ 182 (310)
|+-|-++|++...+.+ .+=++|.|-+..--.+-+-+.+.+.+++-++.-.-+ .+.++.+|.|+.. ..+.++++
T Consensus 74 ~~kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~G~~~a~~a 153 (457)
T TIGR02932 74 AKRIEEGVLTLARRYPNLRVIPIITTCSTETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVTGYAECVKS 153 (457)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCchHHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHHHHHHHHHH
Confidence 7788888887654331 244677776642111233333333332222111111 4688999999873 23444444
Q ss_pred HHH-HH-----HcCcccEEEeecCCHHHHHHHHHHHHhcCCCeee
Q 021629 183 LGD-AV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 183 L~~-L~-----~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
|-+ +. .+++|.-||-.+ ++..+.++.+.++..|+.+.+
T Consensus 154 li~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 154 VIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred HHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 432 21 236688886443 345566666666666665544
No 283
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.86 E-value=4.4e+02 Score=24.81 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=58.8
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHcCc---ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeeccCc
Q 021629 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (310)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~L~~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (310)
+-||.++. .+.+++++++..+.+.|+ ++++=+. |.+.++++++.+.++ +++..++-++||+
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~ 285 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVND 285 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCC
Confidence 67887764 246789999988887754 2333333 456778888877765 3456888899998
Q ss_pred cccC---cccc---chhHHH--HHcCceEEEccccccc
Q 021629 229 IYRK---PEEN---GVKAAC--DELGITLIAYCPIAQG 258 (310)
Q Consensus 229 ~~~~---~~~~---~~l~~~--~~~gi~v~a~~pl~~G 258 (310)
.... +.+. .+.+.. +++||.+......+..
T Consensus 286 ~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~d 323 (336)
T PRK14470 286 ATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQD 323 (336)
T ss_pred CCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCC
Confidence 5431 1111 244555 3679999887776643
No 284
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=29.73 E-value=89 Score=30.09 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCc--cc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEc
Q 021629 179 FIDGLGDAVEQGL--VK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (310)
Q Consensus 179 ~~~~L~~L~~~G~--ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (310)
-++.+.+|++.-. |. .-|-+.++.+.+..+++. -..+++|....-+---.+-..+.+.|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-----~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-----GCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-----CCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 3667777777644 22 337788888888888664 347788877665432112124889999999999876
No 285
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.54 E-value=3.4e+02 Score=25.46 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccce---------EEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHH
Q 021629 140 WRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAY 209 (310)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl---------~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~ 209 (310)
+.++.+.+.+-++. |.+.|+++|.+ -+-+.+...+..+.++.+.+..+.-++..+-+... +.+.++.+.
T Consensus 19 ~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 97 (333)
T TIGR03217 19 HQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAY 97 (333)
T ss_pred CcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHH
Q ss_pred HHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEc
Q 021629 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (310)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (310)
+. .++++.+-.+.-+-..... .++++++.|..+...
T Consensus 98 ~~------gvd~iri~~~~~e~d~~~~-~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 98 DA------GARTVRVATHCTEADVSEQ-HIGMARELGMDTVGF 133 (333)
T ss_pred HC------CCCEEEEEeccchHHHHHH-HHHHHHHcCCeEEEE
No 286
>PRK05826 pyruvate kinase; Provisional
Probab=29.54 E-value=5.7e+02 Score=25.33 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHH--HHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021629 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (310)
Q Consensus 78 ~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~--lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (310)
...++.+++.|+.++-.+..... |++ +-+.+.... .+++.|..|+ -+++.+ +.+++.+
T Consensus 176 ~~~i~~ald~g~d~I~~sfV~sa---------edv~~l~~~l~~~~----~~~~~iiakI------Et~eav-~nldeI~ 235 (465)
T PRK05826 176 KADIKFAAEQGVDYIAVSFVRSA---------EDVEEARRLLREAG----CPHAKIIAKI------ERAEAV-DNIDEII 235 (465)
T ss_pred HHHHHHHHHCCCCEEEECCCCCH---------HHHHHHHHHHHHcC----CcCceEEEEE------cCHHHH-HhHHHHH
Confidence 34578899999999976655433 322 345555543 2379999999 345544 4667666
Q ss_pred HhhCCCccceEEeecCCC---CChHHHHHH----HHHHHHcCcc
Q 021629 156 FRLGLSSVELYQLHWAGI---WGNEGFIDG----LGDAVEQGLV 192 (310)
Q Consensus 156 ~~L~~d~iDl~~lH~pd~---~~~~~~~~~----L~~L~~~G~i 192 (310)
+. +|.+++-.-|- .+.+++... ++..++.||.
T Consensus 236 ~~-----~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 236 EA-----SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred HH-----cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCC
Confidence 65 79999887664 344444433 3445667864
No 287
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.53 E-value=3.1e+02 Score=26.74 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=83.6
Q ss_pred HHHHHHhhCCCccceEEeecC--CC--CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeecc
Q 021629 151 LKDSLFRLGLSSVELYQLHWA--GI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~p--d~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (310)
++..|+.++. .+.++.+..- |. .+.+.-...+...+++. -+||-++.+...+.++....+..++...++-.
T Consensus 127 v~~~l~~~~~-~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~-- 201 (429)
T PF10100_consen 127 VKGFLNDLGP-DAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDN-- 201 (429)
T ss_pred HHHHHHhcCC-CceEEEeecccccceeccCCCcceehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCC--
Confidence 5666677775 3455544431 11 11222334444455544 68999988888899888888877776655311
Q ss_pred CccccCccccchhHHHHHcCceEEEcccccccccCCC--CCCC--------CCCCCCCCCCcchHhHhhHHHHHHHHHHH
Q 021629 227 SLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK--YTPQ--------NPPTGPRGRIYTAEYLRNLQPLLNRIKEL 296 (310)
Q Consensus 227 n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~--~~~~--------~~p~~~~~~~~~~~~~~~~~~~~~~l~~i 296 (310)
-=.++.++|.+..+.||...-++=+ +.+. --|++|- .+........+..++.+|
T Consensus 202 ------------pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPI----T~~~I~~M~~lw~Ei~~i 265 (429)
T PF10100_consen 202 ------------PLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPI----TPTLIRDMVQLWKEIMEI 265 (429)
T ss_pred ------------hHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCC----CHHHHHHHHHHHHHHHHH
Confidence 1236788999999999988765532 1111 1355553 344456677777889999
Q ss_pred HHhcCCCcc
Q 021629 297 GENYSKTST 305 (310)
Q Consensus 297 A~~~g~s~~ 305 (310)
-+++|+.+-
T Consensus 266 ~~~l~~~~~ 274 (429)
T PF10100_consen 266 LNKLGIEPF 274 (429)
T ss_pred HHHcCCCcc
Confidence 999887653
No 288
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.51 E-value=62 Score=26.07 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=29.8
Q ss_pred hhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchH--hHhhHHHHHHHHHHHHHhcCCCcc
Q 021629 238 VKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE--YLRNLQPLLNRIKELGENYSKTST 305 (310)
Q Consensus 238 ~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~l~~iA~~~g~s~~ 305 (310)
+|+.|++.|+.++--.|--.|. ++... ..+...+..++++.+|+++|...+
T Consensus 41 ~L~~~k~~g~~~lfVi~PvNg~-----------------wydytG~~~~~r~~~y~kI~~~~~~~gf~v~ 93 (130)
T PF04914_consen 41 LLDVCKELGIDVLFVIQPVNGK-----------------WYDYTGLSKEMRQEYYKKIKYQLKSQGFNVA 93 (130)
T ss_dssp HHHHHHHTT-EEEEEE----HH-----------------HHHHTT--HHHHHHHHHHHHHHHHTTT--EE
T ss_pred HHHHHHHcCCceEEEecCCcHH-----------------HHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 7999999999986654444442 22211 123455666799999999998544
No 289
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=29.44 E-value=59 Score=33.36 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir 193 (310)
.|+.||++ |++-.|+.|+.+.+.+..+|+.|+..|-+.
T Consensus 414 ~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 414 QLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 48899998 999999999988899999999999776655
No 290
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=29.43 E-value=4e+02 Score=23.48 Aligned_cols=139 Identities=13% Similarity=0.024 Sum_probs=77.5
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHH
Q 021629 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (310)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~ 206 (310)
|+++.+-|+-. ....+.+..++.+++.-+..|.+ -+.|-..++ .++=....+. +..-|.|-.-+....+
T Consensus 28 ~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~yg~~---gv~i~~~np---~~l~~~V~k~----~~~vv~V~GGd~~vNR 96 (216)
T PRK03892 28 DEVVFTKKLVL-EDSPDFGSLKEELKELKKEYGKV---AILLVTPKP---SLIREVKQRF----LNYLIYVQGGDLRVNR 96 (216)
T ss_pred hheEEEEEEec-cCCCChhhhHHHHHHHHHhcCcc---eEEEecCCH---HHHHHHHHhc----cceEEEEECCcHHHHH
Confidence 68888888843 12345667888888888888865 555555443 2222222222 4566777665555555
Q ss_pred HHHHHHHhcCCCeeeeeeccC-ccccCccccchhHHHHHcCceE-EEcccccccccCCCCCCCCCCCCCCCCCcchHhHh
Q 021629 207 NAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITL-IAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (310)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~l~~~~~~gi~v-~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~ 284 (310)
.+++. ..+++-.++- --+.. .+--+...+.++||++ +..+|+-.. + +....
T Consensus 97 ~AvE~------~VDVL~~P~~~Rkd~g-~dHVLAKlAa~n~VAIe~~L~plL~~-----------------~---G~~Ra 149 (216)
T PRK03892 97 YAIER------GVDAIISPWVGRKDPG-IDHVLARMAAKRGVAIGFSLSPLLRA-----------------N---PYERA 149 (216)
T ss_pred HHHhc------ccceeecccccCcCCC-ccHHHHHHHHHcCeEEEEecHHHHhh-----------------C---chhHH
Confidence 55332 3444322221 10101 1112677889999999 777777632 1 11122
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 021629 285 NLQPLLNRIKELGENYSKT 303 (310)
Q Consensus 285 ~~~~~~~~l~~iA~~~g~s 303 (310)
+....+.++.+++++|+.+
T Consensus 150 r~L~~~r~~l~L~rKYd~P 168 (216)
T PRK03892 150 NILRFMMKAWQLVNKYKVP 168 (216)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3444455677777777764
No 291
>PRK10658 putative alpha-glucosidase; Provisional
Probab=29.30 E-value=2.5e+02 Score=29.21 Aligned_cols=89 Identities=15% Similarity=0.292 Sum_probs=57.5
Q ss_pred CccceEEeecCCCCChHHHHHHHHHHHHc---------CcccEEEee-cCCHHHHHHHHHHHHhcCCCeeeeeeccCccc
Q 021629 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ---------GLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (310)
Q Consensus 161 d~iDl~~lH~pd~~~~~~~~~~L~~L~~~---------G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (310)
..+|.|++..|+ ++++++...+|--. |.-.+-+.. +++.+.+.++++..++.++|++++.+.+--+.
T Consensus 234 ~~ldyy~~~G~t---p~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPT---PKEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCC---HHHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 678999999875 45666655554311 322111111 35667788888888999999998776542111
Q ss_pred ------------cCccccchhHHHHHcCceEEEc
Q 021629 231 ------------RKPEENGVKAACDELGITLIAY 252 (310)
Q Consensus 231 ------------~~~~~~~~l~~~~~~gi~v~a~ 252 (310)
+-+...++++..++.|+.++.|
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~ 344 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVW 344 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEe
Confidence 0112236999999999999987
No 292
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.19 E-value=4.1e+02 Score=23.66 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=32.5
Q ss_pred chhHHHHHc-CceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021629 237 GVKAACDEL-GITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (310)
Q Consensus 237 ~~l~~~~~~-gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s 303 (310)
.+.+.++++ ++.+....|+..++.. ..+.......+.+...-++|++.|++
T Consensus 49 ~l~~~~~~~~~~~i~~~~~~~~~~~~----------------~~~~~r~~~~~~~~~~i~~A~~lG~~ 100 (279)
T cd00019 49 KFKAIAEEGPSICLSVHAPYLINLAS----------------PDKEKREKSIERLKDEIERCEELGIR 100 (279)
T ss_pred HHHHHHHHcCCCcEEEEcCceeccCC----------------CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 588889999 8888877776533211 12223444555666777788888765
No 293
>PRK15108 biotin synthase; Provisional
Probab=29.18 E-value=4.9e+02 Score=24.47 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeec--CCCCChHHHHHHHHHHHHcCcccEEEeec--CCHHHHHHHHHHH-HhcC
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYEKL-KKRG 216 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~--pd~~~~~~~~~~L~~L~~~G~ir~iGvS~--~~~~~l~~~~~~~-~~~~ 216 (310)
.+++.|.+.... ...+|+..+ .+...+ |.....+.+.+.+..+++.|. .+.+|+ .+.+.+.++.+.. +.-+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 466777777664 456788777 333332 322345677777777787664 244554 4667776665441 1111
Q ss_pred CCeeeeeeccCccc-cCc--cccchhHHHHHcCceEEEccccccc
Q 021629 217 IPLASNQVNYSLIY-RKP--EENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 217 ~~~~~~q~~~n~~~-~~~--~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
+.++...-.|.-+. ... +..+.++.+++.|+.+.+-..++.|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11112111121111 111 1124778888889877554455433
No 294
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=29.18 E-value=4.8e+02 Score=25.53 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeec----CCHHHHHHHHHHHHhcCCCeeee--
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRGIPLASN-- 222 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~----~~~~~l~~~~~~~~~~~~~~~~~-- 222 (310)
.+++-.++-| ++.=|.+.+..|.. ..++.-+...| ++.++|.. .+++.+++.. +...+++.++
T Consensus 166 ~al~l~~~~l-~~pGd~v~vE~PtY------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~---~~~~~k~~y~~P 234 (459)
T COG1167 166 QALDLLLRLL-LDPGDTVLVEDPTY------PGALQALEALG-ARVIPVPVDEDGIDPEALEEAL---AQWKPKAVYVTP 234 (459)
T ss_pred HHHHHHHHHh-CCCCCEEEEcCCCc------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHH---hhcCCcEEEECC
Confidence 4566444444 34558899988863 22233333333 56676654 3456666553 3333344333
Q ss_pred --eeccCccccCccccchhHHHHHcCceEEEcccc
Q 021629 223 --QVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 223 --q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl 255 (310)
|++.-.......+..+++.|+++|+-||-=-+.
T Consensus 235 ~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 235 TFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 333333333333346899999999999864444
No 295
>PRK09061 D-glutamate deacylase; Validated
Probab=29.17 E-value=5.8e+02 Score=25.36 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (310)
++..++++.|++.|...|=+...|-.+.+ ...+-+.++... +-+..|....-.... .+......++++.
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~~-~~~~~e~~av~~~ 237 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLSN-VDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCccc-CCchhHHHHHHHH
Confidence 45777888999999999977655644333 555656555544 245666666632100 1122223344444
Q ss_pred HHhhCCCccceEEeecCC--CCChHHHHHHHHHHHHcCcccEEEeecCC
Q 021629 155 LFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~pd--~~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (310)
++....--.-+.+.|--. ..+..+.++.+++++++|.--..-++.|.
T Consensus 238 i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 238 IAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 433221113356666432 24567889999999999954444555444
No 296
>PTZ00081 enolase; Provisional
Probab=29.10 E-value=3.4e+02 Score=26.63 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcC--cccEEEe--ecCCHHHHHHHHHHHHhcCC
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGI 217 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~~ 217 (310)
.+.+.+.+-+.+.++.+ ++++|..|-.. +-|+.+.+|.++= .|.-+|= +..+++.+.++++. -
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~---~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ---DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc---ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 34555555444555544 46777776542 3355555665543 5655553 34568888888665 2
Q ss_pred CeeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
..+++|+..|-+-.=.+-..+.+.|+++|+.++.
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 4667777666443222223588999999999877
No 297
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=28.99 E-value=1.6e+02 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=19.7
Q ss_pred HHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcC
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G 190 (310)
.+.+.|+.+...-+|.+++...+. -...+.+..++.|.+.|
T Consensus 53 ~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (148)
T smart00857 53 GLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG 95 (148)
T ss_pred HHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC
Confidence 344444444444455555555554 22334455555555544
No 298
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=28.98 E-value=3.5e+02 Score=24.38 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccccc
Q 021629 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
-++.+|.++.+.++..+++..+.+..++.- -+-..+++.|+.++...|++.+
T Consensus 204 ps~~~l~~l~~~ik~~~v~~if~e~~~~~~-------~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 204 PSPKQLAELVEFVKKSDVKYIFFEENASSK-------IAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHHHHHHHcCCcEEEecccccc
Confidence 467889999888888888877776655431 1344678889998877777754
No 299
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.76 E-value=4.4e+02 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEC
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDT 94 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~Dt 94 (310)
+++|.+...+.++..++.|++-+=.
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~ 38 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVV 38 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567788888888888888875533
No 300
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.72 E-value=4.2e+02 Score=23.57 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=53.1
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHH
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~ 242 (310)
.++.++..|-+ .+-++.+.++. .+.=-..|-|-++.+.+..+++. ...+++|+....+-.-.+-..+.+.|
T Consensus 153 ~~i~~iEqP~~---~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a 223 (263)
T cd03320 153 GRIEYIEQPLP---PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEA 223 (263)
T ss_pred cCCceEECCCC---hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHH
Confidence 46666766643 23456666666 44444667777777777776554 34677777665433111112489999
Q ss_pred HHcCceEEEccccccc
Q 021629 243 DELGITLIAYCPIAQG 258 (310)
Q Consensus 243 ~~~gi~v~a~~pl~~G 258 (310)
+++|+.++..+-+..+
T Consensus 224 ~~~gi~~~~~~~~es~ 239 (263)
T cd03320 224 RARGIPAVVSSALESS 239 (263)
T ss_pred HHcCCCEEEEcchhhH
Confidence 9999999886555433
No 301
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.68 E-value=2.4e+02 Score=22.59 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=40.2
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEeecCCC--CChHHHHHHHHHHHH
Q 021629 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (310)
Q Consensus 126 R~~~~I~tK-~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~ 188 (310)
|=-+.|+-| ++. ...+..+++.+.++.+... ..-.|++++..+.. .+..++.+.|..|.+
T Consensus 47 RiG~~VsKK~~g~---AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~ 111 (130)
T PRK00396 47 RLGLVIGKKSVKL---AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWK 111 (130)
T ss_pred cEEEEEecccCcc---HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 455777777 542 4567777777777777543 23579999998865 456667666666643
No 302
>PRK07534 methionine synthase I; Validated
Probab=28.62 E-value=5e+02 Score=24.40 Aligned_cols=176 Identities=14% Similarity=0.021 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHH----HHHHHHh---hccCCCCCCcEEEEecCCCCCC------
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET----LLGRFIK---ERKQRDPEVEVTVATKFAALPW------ 140 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~----~lG~al~---~~~~~~~R~~~~I~tK~~~~~~------ 140 (310)
++...++=+..+++|-+.+=|..+..+...-..+.+|+ +.-.+++ +..... ..+++|+--+|+...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~-~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKA-GRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEecCCCccccCCCC
Confidence 47777788888999999998665433300000000122 2222221 111000 135788888886421
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCC------HHHHHHHHHHHHh
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKK 214 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~------~~~l~~~~~~~~~ 214 (310)
..+.+.+.......++.|--.-+|++++.-. ....|+...++-+++.++--.+.++-.+ ...++++++.++.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 1356677777877788884456999999854 2456666666666766776666665422 1334555554443
Q ss_pred cCCCeeeeeeccCccccCccccchhHHHHHc-CceEEEcc
Q 021629 215 RGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAYC 253 (310)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~-gi~v~a~~ 253 (310)
.+..++++-+++...-..... .++.....+ ++.+++|-
T Consensus 201 ~~~~~~avGvNC~~gp~~~~~-~l~~~~~~~~~~pl~vyP 239 (336)
T PRK07534 201 LGEPPLAFGANCGVGASDLLR-TVLGFTAQGPERPIIAKG 239 (336)
T ss_pred cCCCceEEEecCCCCHHHHHH-HHHHHHHhcCCCeEEEEc
Confidence 333457777777631111111 234444333 56666664
No 303
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=28.49 E-value=3.8e+02 Score=25.88 Aligned_cols=81 Identities=12% Similarity=0.052 Sum_probs=49.5
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcC--cccEEE-e-ecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccch
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-V-SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G--~ir~iG-v-S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 238 (310)
.++++|..|-.... |+.+.+|.+.- .+.-+| = ..++++.+.++++. -..+++|+..+-+-.-.+-..+
T Consensus 277 ~~i~~iEdPl~~~D---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~a~d~v~ik~~~iGGite~~~i 348 (408)
T cd03313 277 YPIVSIEDPFDEDD---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----KAANALLIKVNQIGTLTETIEA 348 (408)
T ss_pred CCcEEEEeCCCCcC---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHH
Confidence 45778888754333 55566666662 444333 2 22478888888655 2466777666644322222258
Q ss_pred hHHHHHcCceEEE
Q 021629 239 KAACDELGITLIA 251 (310)
Q Consensus 239 l~~~~~~gi~v~a 251 (310)
...|+++|+.++.
T Consensus 349 a~lA~~~G~~~~~ 361 (408)
T cd03313 349 IKLAKKNGYGVVV 361 (408)
T ss_pred HHHHHHcCCeEEc
Confidence 8999999999964
No 304
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.47 E-value=5.9e+02 Score=25.20 Aligned_cols=138 Identities=20% Similarity=0.105 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCeEE--------CCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 021629 75 KAAKAAFDTSLDNGITFFD--------TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~D--------tA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~ 146 (310)
+...++++.|+|+|-=-|- |.+.|.++.- +-..+++.+.++.-... +..+.-+|.. ..+...
T Consensus 182 aaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l--~~~t~el~~la~~va~a---g~~iLqst~d-----~~egaa 251 (579)
T COG3653 182 AAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRAL--PFATWELRRLAISVARA---GGRILQSTHD-----RDEGAA 251 (579)
T ss_pred HHHHHHHHHHHhccccccchhhhcccccccccCCccc--CcchHHHHHHHHHHHHh---cCceeEeecc-----ccchHH
Confidence 4567899999998855444 6677765432 01235666655532211 2445444444 244556
Q ss_pred HHHHHHHHHHhh-CCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCC--eeeee
Q 021629 147 VLAALKDSLFRL-GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQ 223 (310)
Q Consensus 147 i~~~l~~sL~~L-~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~--~~~~q 223 (310)
+.+.++++.+.. .-..+-+.+.|.-+. .-..+|++-+....++++..+ +.+ +++.-
T Consensus 252 ~L~~l~~a~ri~~R~~~vr~v~s~~a~a-----------------g~~n~~~a~~~lgl~~kaq~~----G~pVg~~~~p 310 (579)
T COG3653 252 ALEALLEASRIGNRRKGVRMVMSHSADA-----------------GSMNWGVAVFGLGLIEKAQLL----GSPVGFDHYP 310 (579)
T ss_pred HHHHHHHHHHhcCcccCceEEEeccccc-----------------cccchhhhhhccchHHHHHHh----CCcceeeecc
Confidence 666666666666 334567888886542 223455666655555555332 333 33333
Q ss_pred eccCccccCccccchhHHHHHcCc
Q 021629 224 VNYSLIYRKPEENGVKAACDELGI 247 (310)
Q Consensus 224 ~~~n~~~~~~~~~~~l~~~~~~gi 247 (310)
...|++.... +++..++.|.
T Consensus 311 ~~a~~ys~~~----~~p~~~e~g~ 330 (579)
T COG3653 311 YTAELYSDGI----DLPVFEEFGA 330 (579)
T ss_pred cccchhccCC----cchhhhhccc
Confidence 3333333322 4555566555
No 305
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.46 E-value=5.3e+02 Score=24.67 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=56.7
Q ss_pred EeecCCC------------CChHHHHHHHHHHHH-cC------cccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeec
Q 021629 167 QLHWAGI------------WGNEGFIDGLGDAVE-QG------LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (310)
Q Consensus 167 ~lH~pd~------------~~~~~~~~~L~~L~~-~G------~ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (310)
.||.++. ++.+++++++.+..+ .| .|+++=+. |.+.+.++++.+.++. .+..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~--l~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEec
Confidence 4898775 234667666555443 32 25555555 4477888888777654 346888999
Q ss_pred cCccccC----cccc---chhHHHHHcCceEEEccccccc
Q 021629 226 YSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 226 ~n~~~~~----~~~~---~~l~~~~~~gi~v~a~~pl~~G 258 (310)
||++... +.+. .+.+..+++||.+.....-+..
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 338 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDD 338 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCc
Confidence 9986632 2111 2566678889999886665543
No 306
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=28.45 E-value=1.4e+02 Score=25.56 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHH
Q 021629 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (310)
...++.+.|+.|+++|.--.| +||.....++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 456788888999999855555 777777766666544
No 307
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=28.43 E-value=4.7e+02 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=14.6
Q ss_pred chhHHHHHcCceEEEcccccc
Q 021629 237 GVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~ 257 (310)
+.++.+++.||.+.+..-++.
T Consensus 149 ~~i~~a~~~Gi~~~s~~iiG~ 169 (309)
T TIGR00423 149 EVIKTAHRLGIPTTATMMFGH 169 (309)
T ss_pred HHHHHHHHcCCCceeeEEecC
Confidence 478888888887766555543
No 308
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.42 E-value=3.3e+02 Score=26.77 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCccceE---------EeecCCCCChHHHHHHHHHHHHc-CcccE---------EEeecCCHHHHHHH
Q 021629 148 LAALKDSLFRLGLSSVELY---------QLHWAGIWGNEGFIDGLGDAVEQ-GLVKA---------VGVSNYSEKRLRNA 208 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~---------~lH~pd~~~~~~~~~~L~~L~~~-G~ir~---------iGvS~~~~~~l~~~ 208 (310)
+..+-..|.++|++.|++. -...++ .|+.|..+++. ..++. +|.++++-+.+++.
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~------p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMWGGATFDACLRFLNED------PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhccCCCC------HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Q ss_pred HHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
++.+...++...-+-...|-...-.+ .+++++++|+.+.+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~---~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLET---AVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHH---HHHHHHHcCCeEEE
No 309
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=28.40 E-value=4.9e+02 Score=24.23 Aligned_cols=128 Identities=12% Similarity=0.093 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
+++.++..++++.+.+.|+..+.- .| |+-.=+..-.+++ +.+++.+ -.+.|+|-.. ..+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~---~G-GEPll~~~~~~ii-~~~~~~g-----~~~~l~TNG~----ll~~e~~--- 98 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHF---SG-GEPLARPDLVELV-AHARRLG-----LYTNLITSGV----GLTEARL--- 98 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEE---eC-ccccccccHHHHH-HHHHHcC-----CeEEEEeCCc----cCCHHHH---
Confidence 456788999999999999877753 23 3110011112223 2233322 2466777652 2344332
Q ss_pred HHHHHHhhCCCccceEEeecCCC--------C--ChHHHHHHHHHHHHcCcc--cEEEeecCCHHHHHHHHHHHHhcCCC
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGI--------W--GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~--------~--~~~~~~~~L~~L~~~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~~ 218 (310)
+.|...+++.|. +-|+.++. . ..+.+++.+..|++.|.- -.+-++..+.+++.++++.+...++.
T Consensus 99 --~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 99 --DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred --HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 234455655443 33444432 0 146778888899988842 12345677889999998888777654
No 310
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.39 E-value=1.9e+02 Score=25.27 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCc---ccEEEeecC-CHHHHHHHHHHHHhcCCC
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL---VKAVGVSNY-SEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~---ir~iGvS~~-~~~~l~~~~~~~~~~~~~ 218 (310)
+.+.... +-+.|-.-|+..+.+=+ ......+.+++|+++-. =-.||..+. +.++++.+++. |..
T Consensus 23 ~~~~a~~-~~~al~~~Gi~~iEit~-------~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA~ 90 (213)
T PRK06552 23 SKEEALK-ISLAVIKGGIKAIEVTY-------TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GAQ 90 (213)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEEC-------CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CCC
Confidence 4454444 33445555665544322 12345666667765421 145888876 78888877655 334
Q ss_pred eeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
|.+ +| ... .+++++|+++||.++.
T Consensus 91 Fiv-----sP---~~~-~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 91 FIV-----SP---SFN-RETAKICNLYQIPYLP 114 (213)
T ss_pred EEE-----CC---CCC-HHHHHHHHHcCCCEEC
Confidence 544 22 112 2588888888888775
No 311
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=28.15 E-value=4.1e+02 Score=23.31 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH-H
Q 021629 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL-A 149 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~-~ 149 (310)
..++++..++++.|.+.|+.-+=..+.| -....+.|+. ..+-|+|=++. |.+...-..+ .
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigF-P~G~~~~~~K~~ 78 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSY-----------VKLAAELLKG-------SDVKVCTVIGF-PLGANTTAVKAF 78 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHH-----------HHHHHHHhCC-------CCCeEEEEecc-cCCCChHHHHHH
Confidence 3467999999999999877655433333 2233344432 34667777653 3343333333 3
Q ss_pred HHHHHHHhhCCCccceEEeec--CCCCChHHHHHHHHHHHHc--Cc-ccEEEeec-CCHHHHHHHHHHHHhcCCCeeeee
Q 021629 150 ALKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQ--GL-VKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQ 223 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~--pd~~~~~~~~~~L~~L~~~--G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q 223 (310)
..++.+ ..|.+-||++ +.. +...+.+.+.+.+.++++. |+ ++-|==+. .+.+++.++.+.+...+..|.---
T Consensus 79 e~~~Ai-~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTs 156 (221)
T PRK00507 79 EAKDAI-ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTS 156 (221)
T ss_pred HHHHHH-HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 344433 4788899954 443 2223567788888888874 43 22211133 467888888888777665544444
Q ss_pred eccC
Q 021629 224 VNYS 227 (310)
Q Consensus 224 ~~~n 227 (310)
.-|.
T Consensus 157 TG~~ 160 (221)
T PRK00507 157 TGFS 160 (221)
T ss_pred CCCC
Confidence 4443
No 312
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.10 E-value=2e+02 Score=29.89 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CcccEEEeecCCHHHHHHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~l~~~~~~~~ 213 (310)
.+-+.+++-++.....-....--+|+|+..+... .+.+++|-+..++ +.+.+|.++|.....+.-+...|.
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 4456677766655444333455788888877543 3466777777777 889999999976655555554443
No 313
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=27.75 E-value=4.3e+02 Score=23.35 Aligned_cols=153 Identities=19% Similarity=0.248 Sum_probs=86.8
Q ss_pred HHHHHHHHHCCCCeEECCcCcCC---CCCCCCCchHHHHHHHH---hhccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 021629 78 KAAFDTSLDNGITFFDTAEVYGS---RASFGAINSETLLGRFI---KERKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 78 ~~~l~~A~~~Gin~~DtA~~Yg~---g~s~~~~~sE~~lG~al---~~~~~~~~R~-~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
.+++..|.+.|+..|=+.++... +.. ++.+-... +...+. .+ ++++..-+...+ .....-
T Consensus 19 ~e~~~~A~~~g~~~~~iTdH~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~i~i~~G~E~~~~~-----~~~~d~ 85 (237)
T COG1387 19 EEMVEAAIELGLEYIAITDHAPFLRVGLD------AELLKYFIEEIRELKKE--YDIKILIGIEVDILP-----DGSLDF 85 (237)
T ss_pred HHHHHHHHHcCCeEEEEeccccccccCCC------HHHHHHHHHHHHHHHHh--cCceEEEeEEEEecC-----CCCccc
Confidence 44589999999999988888655 322 44433322 222221 12 233333332211 112222
Q ss_pred HHHHHHhhCCCccceEEeecCC--CCChHHHHHHHHHHHHcCcccEEEeecC----------CHHHHHHHHHHHHhcCCC
Q 021629 151 LKDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY----------SEKRLRNAYEKLKKRGIP 218 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd--~~~~~~~~~~L~~L~~~G~ir~iGvS~~----------~~~~l~~~~~~~~~~~~~ 218 (310)
.+..++.| |+ =+..+|.+. ........+.+..+...+.|.-||=-+. ....+++.++.+...+..
T Consensus 86 ~~~~~~~l--D~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a 162 (237)
T COG1387 86 LDEILKEL--DY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGKA 162 (237)
T ss_pred chhhHhhc--CE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCcE
Confidence 33344443 33 356788863 3456777888888888888888774443 234566777777777765
Q ss_pred eeeeeeccCccccCccccchhHHHHHcCceEE
Q 021629 219 LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (310)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~ 250 (310)
+.++-- .-...+.. .++..|++.|+.+.
T Consensus 163 leins~---~~~~~~~~-~~~~~~~e~G~~~~ 190 (237)
T COG1387 163 LEINSR---PGRLDPNS-EILRLARELGVKLA 190 (237)
T ss_pred EeecCC---cCccCchH-HHHHHHHHhCCeEE
Confidence 554322 21222222 58999999988874
No 314
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.72 E-value=4e+02 Score=23.03 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhh---CCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecC
Q 021629 145 QSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (310)
Q Consensus 145 ~~i~~~l~~sL~~L---~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~ 200 (310)
..+.+.+++.++++ |. .+++++.... .+.+...+.++.+..+ ++..|=+...
T Consensus 15 ~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~--~~~~~~~~~~~~~~~~-~vdgiIi~~~ 69 (272)
T cd06300 15 AQMLDEFKAQAKELKKAGL-ISEFIVTSAD--GDVAQQIADIRNLIAQ-GVDAIIINPA 69 (272)
T ss_pred HHHHHHHHHHHHhhhccCC-eeEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 44555555555555 42 1344433222 2234444555555554 4444444333
No 315
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=27.70 E-value=5e+02 Score=24.09 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH---
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL--- 148 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~--- 148 (310)
.+.++..+.++.+.+.|++.|-.......... .+.+-+.++...... -++ ++ +..++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i----~~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHI----HI----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCc----CC----CCCCHHHHHHHh
Confidence 56788888899889999987765422211111 333333333221000 011 11 112232221
Q ss_pred -------HHHHHHHHhhCCCccceE--E-e-----ec--CCCCChHHHHHHHHHHHHcCc-ccE---EEeecCCHHHHHH
Q 021629 149 -------AALKDSLFRLGLSSVELY--Q-L-----HW--AGIWGNEGFIDGLGDAVEQGL-VKA---VGVSNYSEKRLRN 207 (310)
Q Consensus 149 -------~~l~~sL~~L~~d~iDl~--~-l-----H~--pd~~~~~~~~~~L~~L~~~G~-ir~---iGvS~~~~~~l~~ 207 (310)
+..-+.|+..|+++++.. - + +. |.....++.++.++.+++.|. +.. +|+ ..+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 344455667788777621 1 1 00 111246788999999999985 322 344 456667666
Q ss_pred HHHHHHhcC
Q 021629 208 AYEKLKKRG 216 (310)
Q Consensus 208 ~~~~~~~~~ 216 (310)
.+..++..+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 666655543
No 316
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=27.69 E-value=4.6e+02 Score=23.72 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHHHHC-CCCeEECC
Q 021629 70 DDRKMKAAKAAFDTSLDN-GITFFDTA 95 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~-Gin~~DtA 95 (310)
+.+|.+...+.++..++. |++-|=..
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~ 42 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVN 42 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 456777888888888888 88765433
No 317
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.49 E-value=4.6e+02 Score=23.62 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCCh---HHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCC-C
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN---EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-P 218 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~---~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~-~ 218 (310)
+.+...+.++...+ .-+|++-|-.|-..|. .-+-++-.+..+.| .+.+.+-++++..+.... .
T Consensus 24 ~~~~~~~~~~~l~~----~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G---------~~~~~~~~~~~~~r~~~~~~ 90 (258)
T PRK13111 24 DLETSLEIIKALVE----AGADIIELGIPFSDPVADGPVIQAASLRALAAG---------VTLADVFELVREIREKDPTI 90 (258)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHhcCCCC
Confidence 44444444433333 3578888887755331 22333334444444 122333333333331111 2
Q ss_pred eeeeeeccCccccCccccchhHHHHHcCc
Q 021629 219 LASNQVNYSLIYRKPEENGVKAACDELGI 247 (310)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~l~~~~~~gi 247 (310)
|.+++.-||++.+...+ .+++.|++.|+
T Consensus 91 p~vlm~Y~N~i~~~G~e-~f~~~~~~aGv 118 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVE-RFAADAAEAGV 118 (258)
T ss_pred CEEEEecccHHhhcCHH-HHHHHHHHcCC
Confidence 34577777776654333 36777777766
No 318
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=27.47 E-value=3.8e+02 Score=22.60 Aligned_cols=53 Identities=13% Similarity=0.313 Sum_probs=35.9
Q ss_pred CccceEEeecCCCCC----------hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhc
Q 021629 161 SSVELYQLHWAGIWG----------NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 161 d~iDl~~lH~pd~~~----------~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 215 (310)
..+|.+++|.|++++ .+++++.+.++.+.| ..+-++..+....+++.+.+...
T Consensus 86 ~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg--G~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 86 GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG--GVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred CceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHhC
Confidence 479999999988742 156777776666655 44566667777777776665543
No 319
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=27.44 E-value=2.2e+02 Score=28.07 Aligned_cols=64 Identities=11% Similarity=0.012 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~ 212 (310)
.+.+...+.+.+.|+.||+++ |-++... ...+..-+.+++|+++|++ |...| +.+++++..+..
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~y~QS---er~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~~r~~~ 111 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRTFRQS---DRFDRYDEAAEKLKAAGRL-YPCYE--TPEELELKRKIQ 111 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-CccccHH---HHHHHHHHHHHHHHHCCCE-EEecC--chHHHHHHHHHH
Confidence 455788899999999999974 6421110 2245567888999999985 45444 467776654433
No 320
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.40 E-value=1.6e+02 Score=28.60 Aligned_cols=58 Identities=7% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccccccc
Q 021629 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (310)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L 260 (310)
...++++.+..++ +.+....+.+-||+..-+.-..+.+.|+++|+-++.=+.++++.+
T Consensus 149 ~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~ 206 (409)
T KOG0053|consen 149 VDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN 206 (409)
T ss_pred hhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence 3444444444333 356777788888887765555688899999999999888887744
No 321
>PTZ00413 lipoate synthase; Provisional
Probab=27.32 E-value=5.8e+02 Score=24.72 Aligned_cols=171 Identities=14% Similarity=0.172 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (310)
...|+++-.+.-+++.+.|++|+=.+....+... +.--..+.+.++..... ..++.|..-++-. ..+.+
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~---D~ga~~~a~~I~~Ir~~--~p~~~IevligDf--~g~~e---- 243 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLP---DGGASHVARCVELIKES--NPELLLEALVGDF--HGDLK---- 243 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCC---hhhHHHHHHHHHHHHcc--CCCCeEEEcCCcc--ccCHH----
Confidence 3456788888888888999987644434331111 00023455555554321 1356666666421 11332
Q ss_pred HHHHHHHhhCCCccceEEeecCCC------------CChHHHHHHHHHHHHc---Cc-cc---EEEeecCCHHHHHHHHH
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ---GL-VK---AVGVSNYSEKRLRNAYE 210 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~------------~~~~~~~~~L~~L~~~---G~-ir---~iGvS~~~~~~l~~~~~ 210 (310)
.|+.|.---+|.|- |+.+. ...++.|+.|+..++. |. +. -+|+.. +.+++.+++.
T Consensus 244 ----~l~~L~eAG~dvyn-HNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~ 317 (398)
T PTZ00413 244 ----SVEKLANSPLSVYA-HNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLR 317 (398)
T ss_pred ----HHHHHHhcCCCEEe-cccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHH
Confidence 33333333345443 44221 2467888889888874 32 22 255554 3456666666
Q ss_pred HHHhcCCCeeee-ee-ccC----cccc---CccccchhHHHHHcCceEEEcccccc
Q 021629 211 KLKKRGIPLASN-QV-NYS----LIYR---KPEENGVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 211 ~~~~~~~~~~~~-q~-~~n----~~~~---~~~~~~~l~~~~~~gi~v~a~~pl~~ 257 (310)
.+...++.+..+ |. .=+ ++.+ ..+-..+-+.+.+.|...++-+||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 666666543322 31 001 1111 11112466778888999999888863
No 322
>PLN02775 Probable dihydrodipicolinate reductase
Probab=27.08 E-value=3.8e+02 Score=24.72 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHH
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~ 209 (310)
++..|..+.-++.|+++|.+ ..++-+.+.++.+.+.|+--=+|.+.|+.+++.++.
T Consensus 68 l~~~l~~~~~~~~~~VvIDF---T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDY---TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred HHHHHHHhhccCCCEEEEEC---CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Confidence 45556555555788777765 345778888899999999999999999999887663
No 323
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.06 E-value=3.3e+02 Score=21.77 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 75 KAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 75 ~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
+...+++..+++ .|+..+|+.-.-.. |+++-.+.+... +=+.|++-.+ ...+. .+.+-+
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~---------e~~v~aa~e~~a-----dii~iSsl~~-----~~~~~-~~~~~~ 75 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP---------EEIARQAVEADV-----HVVGVSSLAG-----GHLTL-VPALRK 75 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEcCchh-----hhHHH-HHHHHH
Confidence 556678888875 79999997655333 777766665533 3344444442 22333 444555
Q ss_pred HHHhhCCCccce-EEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHH
Q 021629 154 SLFRLGLSSVEL-YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (310)
Q Consensus 154 sL~~L~~d~iDl-~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~ 209 (310)
.|+..+.+ |+ +++-.-- + . +..++|++.|.-+.|+..+--.+.+..+.
T Consensus 76 ~L~~~g~~--~i~vivGG~~--~-~---~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 76 ELDKLGRP--DILVVVGGVI--P-P---QDFDELKEMGVAEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHhcCCC--CCEEEEeCCC--C-h---HhHHHHHHCCCCEEECCCCCHHHHHHHHH
Confidence 56666654 44 4443211 1 1 12456899999999999885444444443
No 324
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=27.00 E-value=6.2e+02 Score=24.97 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHH----HHhhC-CCccceEEeecCCCCChHHHHHHHHHHHHc-CcccEEEeecCCHHHHHHHHHHHHhc
Q 021629 142 LGRQSVLAALKDS----LFRLG-LSSVELYQLHWAGIWGNEGFIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 142 ~~~~~i~~~l~~s----L~~L~-~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~-G~ir~iGvS~~~~~~l~~~~~~~~~~ 215 (310)
.+.+.+...++.. ..+-| .=.+|++-|+.... +.+.+...++.+++. +. -+.+.+++++.++++++.+..
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~-dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad- 177 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG-DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVAD- 177 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC-CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCC-
Confidence 3445555555544 11223 22467777887654 456677777777763 43 378888999999999776421
Q ss_pred CCCeeeeeeccCccccCccccchhHHHHHcCceEEEccc
Q 021629 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (310)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~p 254 (310)
..+.++-... +..+ .+.+.|+++|..++...+
T Consensus 178 -~~plI~Sat~-----dN~~-~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 178 -RKPLLYAATK-----ENYE-EMAELAKEYNCPLVVKAP 209 (450)
T ss_pred -CCceEEecCc-----chHH-HHHHHHHHcCCcEEEEch
Confidence 2344332221 1112 488889999999988664
No 325
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.80 E-value=2.4e+02 Score=25.54 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=35.6
Q ss_pred CccceEEeecCCC----CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHH
Q 021629 161 SSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (310)
Q Consensus 161 d~iDl~~lH~pd~----~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~ 208 (310)
...|+++|.-|-. ....++++-|.+|+++| +.|=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg--~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG--KTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCcHHhHhh
Confidence 5689999998855 33568999999999998 5667788887666544
No 326
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=26.78 E-value=5.1e+02 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=13.4
Q ss_pred chhHHHHHcCceEEEcccc
Q 021629 237 GVKAACDELGITLIAYCPI 255 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl 255 (310)
+.++.+++.|+.+-+..-+
T Consensus 153 ~~i~~a~~~Gi~~~s~~i~ 171 (322)
T TIGR03550 153 ETIEDAGRLKIPFTTGILI 171 (322)
T ss_pred HHHHHHHHcCCCccceeeE
Confidence 5788889999876554444
No 327
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=26.71 E-value=2.2e+02 Score=28.04 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=41.3
Q ss_pred HHhhCCCccceEEee-cCCCCChHHHHHHHHHHHHcCcccEEEee-cCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 155 L~~L~~d~iDl~~lH-~pd~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
...+|.|++=+++.. +|...+.+.+-+....+. ++.+||- |-+++.+.++.+. ..++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 345678888776422 343344444443333332 8899987 6688888887655 57899999774
No 328
>PRK06424 transcription factor; Provisional
Probab=26.71 E-value=1.8e+02 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.4
Q ss_pred chhHHHHHcCceEEEc---cccc
Q 021629 237 GVKAACDELGITLIAY---CPIA 256 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~---~pl~ 256 (310)
.+=+.|.++|..+..+ +|..
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~ 46 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVK 46 (144)
T ss_pred ehhHHHHHcCCcccccCCCCccc
Confidence 4788899999999998 5553
No 329
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=26.66 E-value=1.2e+02 Score=28.55 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCcccEEEeecCCH-------HHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHH
Q 021629 179 FIDGLGDAVEQGLVKAVGVSNYSE-------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (310)
Q Consensus 179 ~~~~L~~L~~~G~ir~iGvS~~~~-------~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~ 244 (310)
+-++++++++.|.-|.+-+|-|+- .-+.++.+..+..+...++ .|+++++++-+.+++....+
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~---~wsiIdrW~t~~glIkafA~ 211 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDI---KWSIIDRWPTREGLIKAFAE 211 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCC---ceEeeccccccchHHHHHHH
Confidence 446778899999999999887643 3466666666766655554 78889998877666655443
No 330
>PRK10508 hypothetical protein; Provisional
Probab=26.61 E-value=91 Score=29.27 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~ 188 (310)
-+++.|.+.|++..+++|+|.+ +++.+. .+.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~-~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI-FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC-CCHHHHHHHHHHHHH
Confidence 4688999999999999998776 333333 466666666665543
No 331
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=26.46 E-value=5.8e+02 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=7.9
Q ss_pred hhHHHHHcCceEEEccc
Q 021629 238 VKAACDELGITLIAYCP 254 (310)
Q Consensus 238 ~l~~~~~~gi~v~a~~p 254 (310)
+.+.|+++|+-++.=..
T Consensus 167 I~~la~~~gi~vIvD~a 183 (405)
T PRK08776 167 VIEAAHKVGALTVVDNT 183 (405)
T ss_pred HHHHHHHcCCEEEEECC
Confidence 44445555544444333
No 332
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.42 E-value=3.1e+02 Score=25.18 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHhhCCCccceEEeec-CCCCChHHH-----HHHHHHHHHcCcccEEEeecCCHHH----HHHHHHHHHhcCCCeeeeee
Q 021629 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKR----LRNAYEKLKKRGIPLASNQV 224 (310)
Q Consensus 155 L~~L~~d~iDl~~lH~-pd~~~~~~~-----~~~L~~L~~~G~ir~iGvS~~~~~~----l~~~~~~~~~~~~~~~~~q~ 224 (310)
++-++-.++|+..+.. .......+. -+.+.++..+--=|++|+.+.++.. .+++.+..++. -++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~----gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVREL----GFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhc----CceEE
Confidence 7778888899988884 211111222 2567777777777999999887653 33333333322 22222
Q ss_pred ccCccccC--c--cc-cchhHHHHHcCceEEEccccc
Q 021629 225 NYSLIYRK--P--EE-NGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 225 ~~n~~~~~--~--~~-~~~l~~~~~~gi~v~a~~pl~ 256 (310)
..++.... + .. ..++++|+++|+.|+.+....
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 33222221 1 11 248999999999998855443
No 333
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=26.32 E-value=3.8e+02 Score=27.57 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEE
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~i 195 (310)
+...+.+.+.+++||+++ |.+ +.--+....+.+.+.+.+|++.|.|..-
T Consensus 73 d~~~~~fk~~l~~lgI~~-D~f-~rTt~~~h~~~v~~~~~~L~~kG~IY~~ 121 (648)
T PRK12267 73 DEISAGFKELWKKLDISY-DKF-IRTTDERHKKVVQKIFEKLYEQGDIYKG 121 (648)
T ss_pred HHHHHHHHHHHHHcCCCC-CCC-eeCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 467778899999999964 732 2211212345678888999999998743
No 334
>PRK05354 arginine decarboxylase; Provisional
Probab=26.31 E-value=7.4e+02 Score=25.62 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=32.0
Q ss_pred HHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCccccccC
Q 021629 242 CDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQSLYE 310 (310)
Q Consensus 242 ~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qvAl~ 310 (310)
.++.|+. +-+-=++||+= -.|.....+. .....|+- .+-...+...|+++|++++++..++.+|
T Consensus 277 L~~~G~~-l~~LDIGGGlg-V~Y~g~~~~~-~~s~nydl--~eya~~Iv~~l~~~~~~~~v~~p~Ii~E 340 (634)
T PRK05354 277 LRKLGAP-IQYLDVGGGLG-VDYDGTRSQS-DSSVNYSL--QEYANDVVYTLKEICEEHGVPHPTIISE 340 (634)
T ss_pred HHHcCCC-CCEEEeCCCcC-cCCCCCcccc-cccCCCCH--HHHHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 3455554 44555788863 2333322111 00111221 1223345567889999988866666543
No 335
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=5.2e+02 Score=23.78 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCC-C---CChHHHHHHHHHHHHc--Ccc-cEEEeecCCHHHHHHHHHHHHh
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd-~---~~~~~~~~~L~~L~~~--G~i-r~iGvS~~~~~~l~~~~~~~~~ 214 (310)
.+.+.+++-++..++. | +|=+++-.-. . ...+|-.+.++..++. |++ --.|++..+.+...++.+.++.
T Consensus 22 vD~~a~~~lv~~li~~-G---v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIAA-G---VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHHc-C---CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 4556555555544443 3 5645544322 1 4567777777777754 665 5678888888887778778888
Q ss_pred cCCC-eeeeeeccCccccCccccchhHHHHHcCceEEEcc-ccccc
Q 021629 215 RGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQG 258 (310)
Q Consensus 215 ~~~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~-pl~~G 258 (310)
.|.. +.++--.|+-..+.....-+...|++-+++++.|+ |...|
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 7764 44444444433321111113444666799999997 66555
No 336
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=26.17 E-value=5.2e+02 Score=23.77 Aligned_cols=172 Identities=14% Similarity=0.049 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCC-------CCCCCCCchHHHHHHHHh---hccCCCCCCcEEEEecCCCCC---
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALP--- 139 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-------g~s~~~~~sE~~lG~al~---~~~~~~~R~~~~I~tK~~~~~--- 139 (310)
.++...++-+..+++|-+.|.|..+..+ |.. ....+++.-.+++ +......+.+++|+--+|+..
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~--~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l 121 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS--EAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYL 121 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCccccc
Confidence 3466678888889999999988766543 111 0001233333332 111000122588888888632
Q ss_pred ---------CCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CcccEEEeecCC------H
Q 021629 140 ---------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS------E 202 (310)
Q Consensus 140 ---------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~------~ 202 (310)
...+.+.+++......+.|--.-+|++++.-. ...+|+..+++-+++. ++--.+.++-.+ .
T Consensus 122 ~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~--~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G 199 (304)
T PRK09485 122 ADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI--PNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDG 199 (304)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc--CCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCC
Confidence 12367888888888888885566999999854 2356666666666655 555555555321 1
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHc-CceEEEc
Q 021629 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAY 252 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~-gi~v~a~ 252 (310)
..++++++..... ..++++-+++. .+..-. .+++...++ +..+++|
T Consensus 200 ~~~~~~~~~l~~~-~~~~~iGiNC~--~p~~~~-~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 200 TPLAEAAALLAAS-PQVVAVGVNCT--APELVT-AAIAALRAVTDKPLVVY 246 (304)
T ss_pred CCHHHHHHHHhcC-CCceEEEecCC--CHHHHH-HHHHHHHhccCCcEEEE
Confidence 3355555554321 23667767764 332211 244444442 5555555
No 337
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.16 E-value=1.4e+02 Score=23.18 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.0
Q ss_pred chhHHHHHcCceEEE
Q 021629 237 GVKAACDELGITLIA 251 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a 251 (310)
+++++|+++||.++.
T Consensus 93 ~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 93 ELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHTT-EEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 589999999999874
No 338
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.01 E-value=5.4e+02 Score=23.89 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcC----------cCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCC
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEV----------YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLG 143 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~----------Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~ 143 (310)
+++..+..+.+.+.|+..||.=-. +|...- ..-+.+.+.++..... -++-|+.|+... |..+
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll----~~p~~~~eiv~av~~a---~d~pv~vKiR~G-~~~~ 147 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALL----QYPDLVKSILTEVVNA---VDVPVTLKIRTG-WAPE 147 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHh----cCHHHHHHHHHHHHHh---cCCceEEEEEcc-ccCC
Confidence 466666677777899999994211 111111 1133344444433211 134566666321 2222
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEeecCCC---CChHHHHHHHHHHHHcCcccEEEeecC-CHHHHHHHHHH
Q 021629 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (310)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~ 211 (310)
..... .+-+.++..|. |.+.+|.... ..-..-|+.+.++++.=.|--||.... +++.+.++++.
T Consensus 148 ~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 148 HRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred cchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhc
Confidence 11121 22233566664 6778886432 111234778888888777888887776 67777777643
No 339
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.95 E-value=5e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEC
Q 021629 70 DDRKMKAAKAAFDTSLDNGITFFDT 94 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~Dt 94 (310)
+.+|.+...+.++..++.|++-+=.
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~ 41 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVV 41 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567888899999999999886543
No 340
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=25.94 E-value=1.9e+02 Score=26.23 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=39.8
Q ss_pred HHHHHHHHHHH-HcCcccEEEeecCCH---HHHHHHHHHHHhcCCC-eeeeeeccCccccCccccchhHHHHHcCceEEE
Q 021629 177 EGFIDGLGDAV-EQGLVKAVGVSNYSE---KRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (310)
Q Consensus 177 ~~~~~~L~~L~-~~G~ir~iGvS~~~~---~~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a 251 (310)
+++++.+.+++ +.-.+.-|=++=+|+ ..++++.+.+...++. +.+.-++ ++ +..++.+.|+++|+.++.
T Consensus 72 ~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP---~e---e~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 72 EKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP---PE---ESEELREAAKKHGLDLIP 145 (259)
T ss_dssp HHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB---GG---GHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCC---hH---HHHHHHHHHHHcCCeEEE
Confidence 56777788888 555666555555543 2355555555554431 2221111 11 223588899999999887
Q ss_pred ccc
Q 021629 252 YCP 254 (310)
Q Consensus 252 ~~p 254 (310)
+-+
T Consensus 146 lv~ 148 (259)
T PF00290_consen 146 LVA 148 (259)
T ss_dssp EEE
T ss_pred EEC
Confidence 643
No 341
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=25.93 E-value=4.2e+02 Score=26.09 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHHHHHHhhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC------hHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~------~~~~~~~ 182 (310)
|+-|-++|++...+.+. +-++|.|-+..---+-|.+.+.+.++ ++++ ++++.+|.|.... ...+.++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~---~~~~---~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKAS---KELG---KPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHh---hhcC---CcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 77777888776544433 55777777742111233444433332 2333 5889999988632 1222333
Q ss_pred HHH-HH----------HcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 183 LGD-AV----------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 183 L~~-L~----------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+-+ +. ..++|.-||-.|+. ..+.++.+.++..|+++.
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~-gd~~eik~lL~~~Gi~v~ 237 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIG-GDAWESRILLEEIGLRVV 237 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCc-ccHHHHHHHHHHcCCeEE
Confidence 322 22 13678889866653 233444444555665543
No 342
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.87 E-value=4.2e+02 Score=25.62 Aligned_cols=106 Identities=22% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-----ChHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-----~~~~~~~~L~ 184 (310)
|+-|-++|++...+.+.+-++|.|-+...-.+-+.+.+ +++. +++ -++++.+|-|... ..+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v---~~~~-~~~---~~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAV---VSEF-QEG---GAPIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHH---HHHh-hhc---CCCEEEEECCCcCcccccHHHHHHHHHH
Confidence 77777777765433334567777766321111222222 2222 333 3689999988762 2333444443
Q ss_pred H-HH------HcCcccEEEeecC-C---HHHHHHHHHHHHhcCCCeeee
Q 021629 185 D-AV------EQGLVKAVGVSNY-S---EKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 185 ~-L~------~~G~ir~iGvS~~-~---~~~l~~~~~~~~~~~~~~~~~ 222 (310)
+ +. +.+.|.-||..+. + ...+.++.+.++..|+++.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 2 22 2355888886431 2 234555555566666665444
No 343
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.83 E-value=4.9e+02 Score=23.42 Aligned_cols=127 Identities=12% Similarity=0.167 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCC---chHHH---------HHHHHhhccCCCCCCcEEEEecCCCCCCC
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETL---------LGRFIKERKQRDPEVEVTVATKFAALPWR 141 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~---~sE~~---------lG~al~~~~~~~~R~~~~I~tK~~~~~~~ 141 (310)
.+...++++...+.|+++++..--|.+..+||+. .+++. +=+.+++.....+.-.+++.|=...
T Consensus 25 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~---- 100 (258)
T PRK13111 25 LETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNP---- 100 (258)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccH----
Confidence 4788899999999999999988888777776653 22222 1233333321100123443332211
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCC-HHHHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS-EKRLRNAYEK 211 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~-~~~l~~~~~~ 211 (310)
-....+++.++.+.---+|=+++ || .+.++.-+..+.+++.|.---.-++..+ .++++.+.+.
T Consensus 101 ----i~~~G~e~f~~~~~~aGvdGvii--pD-Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~ 164 (258)
T PRK13111 101 ----IFQYGVERFAADAAEAGVDGLII--PD-LPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASH 164 (258)
T ss_pred ----HhhcCHHHHHHHHHHcCCcEEEE--CC-CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh
Confidence 11223333333333223455555 44 4677888888888888865545455554 4667766544
No 344
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.82 E-value=5.8e+02 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHcCcc-----cEEEeecCCHHHHHHHHHHHH
Q 021629 176 NEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~i-----r~iGvS~~~~~~l~~~~~~~~ 213 (310)
.++++++++.+++.|-- --+|+...+.+.+.+.++.+.
T Consensus 142 ~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~ 184 (378)
T PRK05660 142 PDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAI 184 (378)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 45556666666665531 123444445555544444433
No 345
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=25.77 E-value=4.8e+02 Score=23.29 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCC----CChHHHHHHHHHHHHc--Cc-ccEEEeecCCHHHHHHHHHHHH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQ--GL-VKAVGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~----~~~~~~~~~L~~L~~~--G~-ir~iGvS~~~~~~l~~~~~~~~ 213 (310)
..+.+.+++.++..++. |++ -+++-.-.. ...+|-.+.++..++. |+ --..|++..+.+...+..+.++
T Consensus 14 ~iD~~~~~~~i~~l~~~-Gv~---gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 14 EVDLDALRRLVEFLIEA-GVD---GLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CcCHHHHHHHHHHHHHc-CCC---EEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHH
Confidence 46778888888877775 554 444443211 3455555555544443 33 3458888888877777777777
Q ss_pred hcCCCeeeeeeccCccccCccccchhHH----HHHcCceEEEccc
Q 021629 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDELGITLIAYCP 254 (310)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~~l~~----~~~~gi~v~a~~p 254 (310)
..|..-.++..++... .. +.+++++ ++.-++.++.|..
T Consensus 90 ~~Gad~v~v~pP~y~~-~~--~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 90 EAGADGVLVVPPYYNK-PS--QEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HcCCCEEEECCCcCCC-CC--HHHHHHHHHHHHhcCCCCEEEEEC
Confidence 7776555554444332 12 2245555 4446899998844
No 346
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=25.46 E-value=3.3e+02 Score=21.21 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHhhCC--CccceEEeecCCC--CChHHHHHHHHHHHH
Q 021629 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (310)
Q Consensus 126 R~~~~I~tK-~~~~~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lH~pd~--~~~~~~~~~L~~L~~ 188 (310)
|--+.|+-| ++. ...+..+++-+.++.+.+.. ...|++++-.+.. .+..++.+.|..|.+
T Consensus 46 R~G~~VsKK~~g~---AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~ 110 (114)
T PRK01732 46 RLGLTVAKKNVKR---AHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWR 110 (114)
T ss_pred EEEEEEEcccCcc---hhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 556777777 542 45667777777777775432 3469999988765 567788888777754
No 347
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=25.43 E-value=5.8e+02 Score=24.10 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCC----CChHHHHHHHHHHHHcCc-ccEEEeecC------CHHHHHHHHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYE 210 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~----~~~~~~~~~L~~L~~~G~-ir~iGvS~~------~~~~l~~~~~ 210 (310)
..++.|+.+++...+. |-=-.+++..-+. .....+..-++.|+++|. |-.||+-+| +.+....++.
T Consensus 168 ~gpd~I~~aF~~Area---dP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~ 244 (345)
T COG3693 168 TGPDYIKLAFHIAREA---DPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALL 244 (345)
T ss_pred CccHHHHHHHHHHHhh---CCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHH
Confidence 3578888888887772 2222333433222 123567788999999999 999998765 3455555555
Q ss_pred HHHhcCCCeeeeeeccCcccc
Q 021629 211 KLKKRGIPLASNQVNYSLIYR 231 (310)
Q Consensus 211 ~~~~~~~~~~~~q~~~n~~~~ 231 (310)
.....|+++.+-++..+...+
T Consensus 245 ~~~k~Gl~i~VTELD~~~~~P 265 (345)
T COG3693 245 KFSKLGLPIYVTELDMSDYTP 265 (345)
T ss_pred HHhhcCCCceEEEeeeeccCC
Confidence 544457888887777776443
No 348
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=25.40 E-value=81 Score=20.00 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCCcccc
Q 021629 292 RIKELGENYSKTSTQS 307 (310)
Q Consensus 292 ~l~~iA~~~g~s~~qv 307 (310)
.+.+||+++|+|.+.|
T Consensus 23 si~~IA~~~gvsr~Tv 38 (45)
T PF02796_consen 23 SIAEIAKQFGVSRSTV 38 (45)
T ss_dssp -HHHHHHHTTS-HHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 6889999999987643
No 349
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=25.39 E-value=4.1e+02 Score=22.34 Aligned_cols=99 Identities=8% Similarity=-0.132 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccE-EEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA-VGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~-iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
.++..+.+.++.. .+.|.|+|-+-.+..+........++.++++++...+.- +.+-..+...+.+. +.. ...+
T Consensus 8 ~~~~~~~~~~~~~-~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~---~~~--~gad 81 (210)
T TIGR01163 8 ADFARLGEEVKAV-EEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIED---FAE--AGAD 81 (210)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHH---HHH--cCCC
Confidence 3444454444433 355666555543332221122234455555554332221 44544444333222 222 2345
Q ss_pred eeeeccCccccCccccchhHHHHHcCceE
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITL 249 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (310)
.+|+....-. +....++.++++|+.+
T Consensus 82 gv~vh~~~~~---~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 82 IITVHPEASE---HIHRLLQLIKDLGAKA 107 (210)
T ss_pred EEEEccCCch---hHHHHHHHHHHcCCcE
Confidence 5555432211 1113556666666554
No 350
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.22 E-value=65 Score=32.53 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.4
Q ss_pred cchHhHhhHHHHHHHHHHHHHhcCCCcccc
Q 021629 278 YTAEYLRNLQPLLNRIKELGENYSKTSTQS 307 (310)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~iA~~~g~s~~qv 307 (310)
|.|..+++...++..|+.+++|||++|..+
T Consensus 294 ~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l 323 (557)
T COG0497 294 FDPNRLEEVEERLFALKSLARKYGVTIEDL 323 (557)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 667778889999999999999999998765
No 351
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.10 E-value=3.1e+02 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=24.4
Q ss_pred CCeeeeeeccCccccCccccchhHHHHHcCceEEEcccccccccC
Q 021629 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (310)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~Lt 261 (310)
.+...++.+=||..+-..-..+.+.|+++|+-++.=+.++.+.+.
T Consensus 150 tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q 194 (396)
T COG0626 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ 194 (396)
T ss_pred ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc
Confidence 345555555555554433334566666666666655555555443
No 352
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=24.99 E-value=6.4e+02 Score=24.44 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCC------------CC-hH---HHHHHH-HHHHHcCcccEEEeecCCH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------------WG-NE---GFIDGL-GDAVEQGLVKAVGVSNYSE 202 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~------------~~-~~---~~~~~L-~~L~~~G~ir~iGvS~~~~ 202 (310)
..+.+.+++.++..+. |+.|+|.+|.+-.... .+ .+ +.++.. +.|.+.|- +.||+|||.-
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 4667777777777664 6799999998764222 11 12 345544 44556676 9999999965
No 353
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.99 E-value=6.6e+02 Score=24.56 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHcCcccE----EEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCce
Q 021629 175 GNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (310)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~----iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (310)
..+++.++++.+++.|.--. +|+-+-+.+.+++.++.+...+ ++.+ .++++.+-+.. .+.+.+++.|+-
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~--~~~~--~~~~l~P~PGT-~l~~~~~~~g~~ 393 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN--PHTI--QVSLAAPYPGT-ELYDQAKQNGWI 393 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCce--eeeecccCCCc-HHHHHHHHCCCc
Confidence 46788888999999986332 3566677888888877766533 3333 34556665555 488888888763
No 354
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=24.86 E-value=4.7e+02 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.7
Q ss_pred CCeeeeeeccCccccCccccchhHHHHHcCceEEEc
Q 021629 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (310)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~ 252 (310)
..+.+.=-+||++++...- ++.+..++.|+.++..
T Consensus 184 ~~Ivl~GrpY~~~D~~in~-~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 184 PAIVLLGRPYNIYDPFINM-GIPDKLRSLGVPVITE 218 (221)
T ss_pred ceEEEEcCCCcCCCcccCC-chHHHHHHCCCeeeCc
Confidence 3566777789998887654 6999999999999864
No 355
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.67 E-value=5e+02 Score=23.12 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECC
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTA 95 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA 95 (310)
+.++..++++.-.+.||..++..
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEee
Confidence 45888889999899999999987
No 356
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=24.63 E-value=6.3e+02 Score=25.25 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=58.2
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCC-----ChHHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~-----~~~~~~~~L~ 184 (310)
|+-|-++|++...+.+.+-++|.+-+. .+-|-..++...+.++.+ ++++.++.|... ..+.++..|-
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~-------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCT-------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcH-------HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 666667776654332234456666552 344445555555566643 679999988762 1233333332
Q ss_pred -HHH-----------HcCcccEEEeecC---CHHHHHHHHHHHHhcCCCeee
Q 021629 185 -DAV-----------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 185 -~L~-----------~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~ 221 (310)
.+. +.+.|.-||.++. ++..+.++.+.++..|+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 222 2356888998652 456666676667776665544
No 357
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=24.53 E-value=4.2e+02 Score=24.18 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHHcCcccEEEeec-CCHHHHHHHHHHHHhcCCCeeeeeeccCccccCc-c---ccchhHHHHHcC-ceEEEccc
Q 021629 181 DGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-E---ENGVKAACDELG-ITLIAYCP 254 (310)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~---~~~~l~~~~~~g-i~v~a~~p 254 (310)
+.|...++.| ..||--| ++.+.++.+++.+++.+. |.++|..-+-+.... . -.-+...|++.+ ++|..+-
T Consensus 6 ~~l~~A~~~~--yav~Afn~~n~e~~~avi~aAe~~~~-PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhl- 81 (282)
T TIGR01859 6 EILQKAKKEG--YAVGAFNFNNLEWTQAILEAAEEENS-PVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHL- 81 (282)
T ss_pred HHHHHHHHCC--ceEEEEEECCHHHHHHHHHHHHHhCC-CEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEEC-
Confidence 4556677777 3455433 477888888888877764 555565443332111 1 112456677777 7776542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcc--hHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 255 IAQGALTGKYTPQNPPTGPRGRIYT--AEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 255 l~~G~Ltg~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
.+|..-..+.. ....+...-+++ ....+.+.++..++.++|+++|++.
T Consensus 82 -DH~~~~e~i~~-ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~V 131 (282)
T TIGR01859 82 -DHGSSYESCIK-AIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSV 131 (282)
T ss_pred -CCCCCHHHHHH-HHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 33211000000 000011101111 1124567777889999999999864
No 358
>PLN02428 lipoic acid synthase
Probab=24.46 E-value=6.2e+02 Score=24.05 Aligned_cols=164 Identities=14% Similarity=0.209 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCc----CcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAE----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~----~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (310)
+.++..++.+.+.+.|++++=... .|.++. -..+.+.++...... -.+.|..=... +..+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~pd--f~~d----- 194 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVPD--FRGD----- 194 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCcc--ccCC-----
Confidence 456666777788888988654321 232222 224444444433211 13333332110 1112
Q ss_pred HHHHHHHHhhCCCccceEEeecCCC------------CChHHHHHHHHHHHHc--Cccc----EEEeecCCHHHHHHHHH
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAYE 210 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~------------~~~~~~~~~L~~L~~~--G~ir----~iGvS~~~~~~l~~~~~ 210 (310)
++.|+.|.-.-+|.|. |+++. ...++.++.|+.+++. |..- -+|+ .=+.+++.+.++
T Consensus 195 ---~elL~~L~eAG~d~i~-hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDVFA-HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCEEc-cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 3333333323356633 55553 1357889999999988 7642 3566 346777888877
Q ss_pred HHHhcCCCee---------eeeeccCccccCccccchhHHHHHcCceEEEcccccc
Q 021629 211 KLKKRGIPLA---------SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 211 ~~~~~~~~~~---------~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 257 (310)
.++..++... -..++.+.+....+-..+-+++.+.|...++-+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 7776553221 2222333333322223477788888999999888863
No 359
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.40 E-value=1e+02 Score=29.07 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.2
Q ss_pred chhHHHHHcCceEEE
Q 021629 237 GVKAACDELGITLIA 251 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a 251 (310)
.+.+.|+++||.+-.
T Consensus 214 ~i~~~c~~rgI~lAS 228 (377)
T COG3454 214 AIAALCRERGIALAS 228 (377)
T ss_pred HHHHHHHHcCCceec
Confidence 588999999998754
No 360
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=24.38 E-value=5.6e+02 Score=23.51 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHhhCC--------------------------CccceEEeecCCC----CChHHHHHHHHHHHHcC
Q 021629 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~--------------------------d~iDl~~lH~pd~----~~~~~~~~~L~~L~~~G 190 (310)
+.....+++.++.-|+||++ -..|++.|.-|-. ...+-.-++.-+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 35677788888888888864 2345555555533 22345566778899999
Q ss_pred cccEEEeecCCHHHHHHHHHH
Q 021629 191 LVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~~ 211 (310)
..|=+|+|.-++++++.+.
T Consensus 181 --atIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 --ATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --CEEEEecchHHHHHHHhhh
Confidence 6788999999999988554
No 361
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=24.31 E-value=89 Score=24.28 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcC
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYG 99 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg 99 (310)
.+.+.++...+++.|++.||.+..|-
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 46788888899999999999999884
No 362
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.27 E-value=3e+02 Score=29.41 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHc--CcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
+.+.|++-.++....--....-+|+|+..+... .+.++.|.+..++ ..+..|.+++.... |...+.. .
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~~k-Ll~TIrS--------R 170 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-PQGFNALLKIVEEPPEHLKFIFATTEPDK-VIGTIRS--------R 170 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-HHHHHHHHHHHhCCCCCeEEEEEeCChhh-hhHHHHh--------h
Confidence 456666644443332223455788888877543 4678888888887 88999998865332 3222111 1
Q ss_pred eeeeccCccccCccccchhHHHHHcCceE
Q 021629 221 SNQVNYSLIYRKPEENGVKAACDELGITL 249 (310)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~l~~~~~~gi~v 249 (310)
|..++|..+.......-+...|++.||.+
T Consensus 171 c~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 171 THHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 33445555543221112455666667653
No 363
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=24.20 E-value=7.1e+02 Score=24.70 Aligned_cols=157 Identities=11% Similarity=0.057 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
+++.....++.|.++|+..|=..+.-..-+ +.+..+ ++.++.+.. -.+.|+-...+ .++.+++.+.++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~-----n~~~ai-~~ak~~G~~---~~~~i~yt~sp---~~t~~y~~~~a~ 170 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPR-----NIQQAL-RAVKKTGKE---AQLCIAYTTSP---VHTLNYYLSLVK 170 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHH-----HHHHHH-HHHHHcCCE---EEEEEEEEeCC---cCcHHHHHHHHH
Confidence 346677789999999998776666544311 234334 445555421 12444444432 456777777776
Q ss_pred HHHHhhCCCccceEEeecCCC-CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHH-HHhcCCCeeeeeeccCccc
Q 021629 153 DSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK-LKKRGIPLASNQVNYSLIY 230 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~~~~~q~~~n~~~ 230 (310)
+. ..+|. |.+.|-..-- ..+.++.+-+..+++...+ -||+=.|+...+.-+... +-+. ..+.+....+++-
T Consensus 171 ~l-~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieA--Gad~vD~ai~g~g 243 (468)
T PRK12581 171 EL-VEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEA--GADRIDTALSPFS 243 (468)
T ss_pred HH-HHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHc--CCCEEEeeccccC
Confidence 64 45775 4445543322 4577777777778776543 488888865443322222 1122 3445555555555
Q ss_pred cCccc---cchhHHHHHcCce
Q 021629 231 RKPEE---NGVKAACDELGIT 248 (310)
Q Consensus 231 ~~~~~---~~~l~~~~~~gi~ 248 (310)
....+ +.++..++..|+.
T Consensus 244 ~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 244 EGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred CCcCChhHHHHHHHHHhcCCC
Confidence 43221 1356666655443
No 364
>PRK06361 hypothetical protein; Provisional
Probab=24.14 E-value=4.5e+02 Score=22.37 Aligned_cols=183 Identities=14% Similarity=0.047 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHH---HHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG---RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG---~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
...++++.|.+.|+..|=.+++...... ...+- +..+...... .=+++...-+.. ...+.+ ..+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~------~~~~~~~~~~~~~~~~~~-~i~v~~GiE~~~----~~~~~~-~~~~ 78 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNL------EEILEKLVRAAEELELYW-DIEVIPGVELTH----VPPKLI-PKLA 78 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccH------HHHHHHHHHHHHHHhhcC-CCEEEEEEEEcc----cCchhh-chHH
Confidence 3567899999999999988888643100 21111 1122111100 124455554432 222233 3334
Q ss_pred HHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
..+++++ .|+..+|............. .++.+.|.+.-+|=-.. ...++++.+...++.+.++- ....+.
T Consensus 79 ~~~~~~~---~~~~svH~~~~~~~~~~~~~-~~a~~~~~~dvlaHpd~---~~~~~~~~~~~~~~~lEin~---~~~~~~ 148 (212)
T PRK06361 79 KKARDLG---AEIVVVHGETIVEPVEEGTN-LAAIECEDVDILAHPGL---ITEEEAELAAENGVFLEITA---RKGHSL 148 (212)
T ss_pred HHHHHCC---CEEEEECCCCcchhhhhhhH-HHHHhCCCCcEecCcch---hhHHHHHHHHHcCeEEEEEC---CCCccc
Confidence 5555554 46668995432111111111 45667887766553222 11233444555555455542 111222
Q ss_pred ccccchhHHHHHcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcccc
Q 021629 233 PEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQS 307 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~v~a~~pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~qv 307 (310)
... .+++.+++.|+.++.-|... .+... . ..+.+..++++.|.++.+|
T Consensus 149 ~~~-~~l~~a~~~gi~vv~~SDaH----------------------~~~d~---~-~~~~~~~i~~~~gl~~~~v 196 (212)
T PRK06361 149 TNG-HVARIAREAGAPLVINTDTH----------------------APSDL---I-TYEFARKVALGAGLTEKEL 196 (212)
T ss_pred chH-HHHHHHHHhCCcEEEECCCC----------------------CHHHH---H-HHHHHHHHHcCCCCCHHHH
Confidence 222 59999999999986644332 11111 1 1347788888888887765
No 365
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=24.10 E-value=1.2e+02 Score=30.52 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEccccccc
Q 021629 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~G 258 (310)
..+++-++.++..++|+.+.-+.|.. +.+.+-..+.++|+++|+.++.-..++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 44666666777888887776555544 33323335889999999999855555544
No 366
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=24.10 E-value=3.9e+02 Score=27.68 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=54.0
Q ss_pred eEECCcCcCCCCC-CCC---CchHHHHHHHHhhccCCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHHHH
Q 021629 91 FFDTAEVYGSRAS-FGA---INSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAALKD 153 (310)
Q Consensus 91 ~~DtA~~Yg~g~s-~~~---~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~---------~~~~~~----~~i~~~l~~ 153 (310)
++.|+..|-||.- -|| ...-.++.++++..+ .+++..+=.-.. ..+.++ +...+.+.+
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 79 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKR 79 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 6777777877531 001 133445555555444 345544433110 011232 456677889
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccE
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~ 194 (310)
.+++||+++ |.+.-. -++.-.+.+.+.+.+|.++|.|-.
T Consensus 80 ~~~~l~i~~-d~f~rt-t~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 80 DFAGFGISF-DNYGST-HSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred HHHHhCCCC-CCCccC-CcHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999974 732111 111235678889999999998753
No 367
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.05 E-value=2e+02 Score=26.34 Aligned_cols=58 Identities=7% Similarity=0.005 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeeeeeeccCcc---------cc--CccccchhHHHHHcCceEEEcccccc
Q 021629 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLI---------YR--KPEENGVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~---------~~--~~~~~~~l~~~~~~gi~v~a~~pl~~ 257 (310)
.+.+..++.++.+.+.|+.-..+-..|.-. .. ...-.+++++++++||+|+.|.--..
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 466778888888888888766665555421 11 11112689999999999988765543
No 368
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.97 E-value=4.2e+02 Score=23.34 Aligned_cols=73 Identities=5% Similarity=-0.048 Sum_probs=36.8
Q ss_pred CeeeeeeccCccccCccccchhHHHHHcCceEEEcc-cccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHH
Q 021629 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKEL 296 (310)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~-pl~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~i 296 (310)
.++.+++-. +.....+ ++.+.++++||.+..++ |++ +...+... ..+.+...+...+.+++.-++
T Consensus 28 Gf~~VEl~~-~~~~~~~--~~~~~l~~~gl~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~ 93 (258)
T PRK09997 28 GFRGVEFMF-PYDYDIE--ELKQVLASNKLEHTLHNLPAG-DWAAGERG----------IACIPGREEEFRDGVAAAIRY 93 (258)
T ss_pred CCCEEEEcC-CCCCCHH--HHHHHHHHcCCcEEEEcCCCC-ccccCcCc----------cccCCCcHHHHHHHHHHHHHH
Confidence 355555432 3233333 58999999999997654 332 22211100 001111112233445567778
Q ss_pred HHhcCCCc
Q 021629 297 GENYSKTS 304 (310)
Q Consensus 297 A~~~g~s~ 304 (310)
|+++|.+.
T Consensus 94 a~~lga~~ 101 (258)
T PRK09997 94 ARALGNKK 101 (258)
T ss_pred HHHhCCCE
Confidence 88888763
No 369
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.94 E-value=1.5e+02 Score=27.67 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=11.6
Q ss_pred chhHHHHHcCceEEEc
Q 021629 237 GVKAACDELGITLIAY 252 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~ 252 (310)
++++..+++|+.++.+
T Consensus 68 ~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 68 ELIKELHEQGFKVVTI 83 (339)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 4777777777777655
No 370
>PF13289 SIR2_2: SIR2-like domain
Probab=23.66 E-value=2.2e+02 Score=22.17 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCC--eeeeeeccCccccCccccchhHHHHHcCceEE
Q 021629 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (310)
Q Consensus 177 ~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~ 250 (310)
..+++.|..+.....+-.||.|--+. .+..++..+....-. ....-+ .+.......-.+.+++||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYIV-----IPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEEE-----EcCCchHHHHHHHHHcCCEEC
Confidence 55778888888889999999996554 566555444332211 112111 122111136788888898875
No 371
>PLN02623 pyruvate kinase
Probab=23.58 E-value=8.1e+02 Score=25.09 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
.++.+... |+.+++.|+.|+-.+-.=.. .. -..+.+.++... +++.|..|+- +++.+ +.+
T Consensus 276 lTekD~~d-i~f~~~~~vD~ialSFVr~a-~D------V~~~r~~l~~~~-----~~~~iiakIE------t~eaV-eNl 335 (581)
T PLN02623 276 ITEKDWED-IKFGVENKVDFYAVSFVKDA-QV------VHELKDYLKSCN-----ADIHVIVKIE------SADSI-PNL 335 (581)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECCCCCH-HH------HHHHHHHHHHcC-----CcceEEEEEC------CHHHH-HhH
Confidence 44444444 78999999999976644322 11 233566776654 5789999993 34433 346
Q ss_pred HHHHHhhCCCccceEEeecCCC---CChHHHHHHHH----HHHHcCc
Q 021629 152 KDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLG----DAVEQGL 191 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd~---~~~~~~~~~L~----~L~~~G~ 191 (310)
++.++ .+|.+++-.-|- .+.+++....+ ..++.||
T Consensus 336 deIl~-----g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gK 377 (581)
T PLN02623 336 HSIIT-----ASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGK 377 (581)
T ss_pred HHHHH-----hCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCC
Confidence 66666 468888887664 34444433333 3445565
No 372
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=23.46 E-value=5e+02 Score=22.68 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=35.8
Q ss_pred cccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceE-EEccccccc
Q 021629 191 LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL-IAYCPIAQG 258 (310)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v-~a~~pl~~G 258 (310)
..-.|.+..-.......+++. ..++++-.++...........++..|.++|+.+ +.++|+-.+
T Consensus 81 ~~d~v~v~~~~~~~~~~a~~~-----~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~ 144 (237)
T PRK00912 81 KVDVLAVHGGDEKVNRAACEN-----PRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKS 144 (237)
T ss_pred cccEEEEeCCCHHHHHHHHcc-----CCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhh
Confidence 355666664443333333322 356776666553222222225889999999999 677777543
No 373
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.44 E-value=3.2e+02 Score=24.21 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHc-CcccEEEeecC-----CHHHHHHHHHHHHhcCCCeeeeeeccCccccCccc-----cchhHHHHH
Q 021629 176 NEGFIDGLGDAVEQ-GLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-----NGVKAACDE 244 (310)
Q Consensus 176 ~~~~~~~L~~L~~~-G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-----~~~l~~~~~ 244 (310)
.+.+.++++.+++. |++..+|+.+. ..+++..+++.+...|++..++..-.-=-+..|.. ..+.+.|++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 34455666666643 56777777654 24777777777777776544443322111111110 136677777
Q ss_pred cCceEEE
Q 021629 245 LGITLIA 251 (310)
Q Consensus 245 ~gi~v~a 251 (310)
.|++-|+
T Consensus 93 ~~~g~IA 99 (223)
T PF06415_consen 93 IGIGRIA 99 (223)
T ss_dssp HTCTEEE
T ss_pred hCCceEE
Confidence 7776554
No 374
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=23.28 E-value=4.4e+02 Score=21.89 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=51.3
Q ss_pred cccEEEeecCCHHHHH---HHHHHHHhc-CCCeeeeeeccCccccCc-------cc-----cchhHHHHHcCceEEEccc
Q 021629 191 LVKAVGVSNYSEKRLR---NAYEKLKKR-GIPLASNQVNYSLIYRKP-------EE-----NGVKAACDELGITLIAYCP 254 (310)
Q Consensus 191 ~ir~iGvS~~~~~~l~---~~~~~~~~~-~~~~~~~q~~~n~~~~~~-------~~-----~~~l~~~~~~gi~v~a~~p 254 (310)
.|...|++..+..++. .+-...... .....++++-.|=..... ++ ..+++.++++|+.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4666777777665443 111222211 123445555555333221 00 1478889999999988887
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCcc
Q 021629 255 IAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (310)
Q Consensus 255 l~~G~Ltg~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~s~~ 305 (310)
....-+.. .. .......+..+.++++|+++|+...
T Consensus 116 ~~~~~~~~------------~~----~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 116 VTRRTFDE------------GG----KVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred ccccccCC------------CC----cccccchhHHHHHHHHHHHhCCCEE
Confidence 64211100 00 0111223344588899999987643
No 375
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.20 E-value=2.9e+02 Score=23.13 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
+.+++..+-.+++|-+.||.+|=.|..||.- -..+-+.+... =++++.|.-..+ ...+...+.+.
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~t--------A~k~lemveg~------lkvVvVthh~Gf-~e~g~~e~~~E 74 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYT--------ALKALEMVEGD------LKVVVVTHHAGF-EEKGTQEMDEE 74 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHH--------HHHHHHhcccC------ceEEEEEeeccc-ccCCceecCHH
Confidence 3456777778889999999999999999861 22222333221 246666554332 12334456677
Q ss_pred HHHHHHhhCCC
Q 021629 151 LKDSLFRLGLS 161 (310)
Q Consensus 151 l~~sL~~L~~d 161 (310)
+++-|+..|.+
T Consensus 75 ~~~~L~erGa~ 85 (186)
T COG1751 75 VRKELKERGAK 85 (186)
T ss_pred HHHHHHHcCce
Confidence 88888888864
No 376
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.18 E-value=6.3e+02 Score=23.68 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=58.3
Q ss_pred EEeecCCC------------CChHHHHHHHHHHHHc-Cc---ccEEEee--cCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~L~~~-G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
+.||.++. .+.+++++.+.++.+. +. |+++=+. |.+.+.++++.+.++. .+..++-++||
T Consensus 212 iSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~--~~~~VnLIpyn 289 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKG--LKVFVNLIPVN 289 (343)
T ss_pred EEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhc--cCcEEEEEecC
Confidence 56777664 2467899998887765 42 4444444 5567788888776553 34567778999
Q ss_pred ccccC---cccc---chhHHHHHcCceEEEcccccc
Q 021629 228 LIYRK---PEEN---GVKAACDELGITLIAYCPIAQ 257 (310)
Q Consensus 228 ~~~~~---~~~~---~~l~~~~~~gi~v~a~~pl~~ 257 (310)
++... +.+. .+.+..+++|+.+......+.
T Consensus 290 p~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~ 325 (343)
T PRK14469 290 PTVPGLEKPSRERIERFKEILLKNGIEAEIRREKGS 325 (343)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 86532 1111 356667788999988766543
No 377
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=23.03 E-value=3e+02 Score=25.59 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=30.6
Q ss_pred chhHHHHHcCceEEEc-ccccccccCC----CCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhc
Q 021629 237 GVKAACDELGITLIAY-CPIAQGALTG----KYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENY 300 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~-~pl~~G~Ltg----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~iA~~~ 300 (310)
.+++.|+++|+-|+.+ .|..++-... .+....+ ..+-|.-++...+...+...+|.++.+++
T Consensus 67 ~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~--~~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 133 (319)
T PF01301_consen 67 RFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKP--DIRLRTNDPPFLEAVERWYRALAKIIKPL 133 (319)
T ss_dssp HHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGST--TS-SSSS-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCcEEEecccceecccccchhhhhhhhccc--cccccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999887 6766653321 0000001 11123334455555555555665555554
No 378
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=22.96 E-value=4.6e+02 Score=22.05 Aligned_cols=110 Identities=16% Similarity=0.159 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
+.+++.++++.+++.|++.+.....-.+ . .+.+...-+.++ ++.|..=. -.+.+.+...++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~--~------~~~i~~l~~~~~------~~~iGag~-----v~~~~~~~~a~~ 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPG--A------LEAIRALRKEFP------EALIGAGT-----VLTPEQADAAIA 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChh--H------HHHHHHHHHHCC------CCEEEEEe-----CCCHHHHHHHHH
Confidence 4688999999999999999987654333 1 555555433332 34333111 134555544433
Q ss_pred HHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeee
Q 021629 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (310)
+|.|++ |.|.. ..++.+. .++.|.--.+|++ +.+++.++.+. .++++++
T Consensus 75 -----~Ga~~i-----~~p~~--~~~~~~~---~~~~~~~~i~gv~--t~~e~~~A~~~------Gad~i~~ 123 (190)
T cd00452 75 -----AGAQFI-----VSPGL--DPEVVKA---ANRAGIPLLPGVA--TPTEIMQALEL------GADIVKL 123 (190)
T ss_pred -----cCCCEE-----EcCCC--CHHHHHH---HHHcCCcEECCcC--CHHHHHHHHHC------CCCEEEE
Confidence 666654 66642 2333333 4444665668888 45666666432 4666665
No 379
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.91 E-value=6.3e+02 Score=23.65 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCccceEEeecCCC--------CChHHHHHHHHHHHHcCc--cc---EEEeecCCHHHHHHHHHHHHh
Q 021629 151 LKDSLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGL--VK---AVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd~--------~~~~~~~~~L~~L~~~G~--ir---~iGvS~~~~~~l~~~~~~~~~ 214 (310)
.-+.|+++|+++|.+=.=..-+. ...++++++++.+++.|. |. -+|+.+-+.+.+.+.++.+..
T Consensus 102 ~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 102 WCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred HHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 44566677777665422222111 245677777777777774 33 255556666666666555443
No 380
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=22.90 E-value=2.4e+02 Score=27.24 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=45.6
Q ss_pred HHHHHcCcccEEEeecCCHHHHH-HHHHHHHhcCCCe-eeeeeccCccccCccccchhHHHHHcCceE---EEccccccc
Q 021629 184 GDAVEQGLVKAVGVSNYSEKRLR-NAYEKLKKRGIPL-ASNQVNYSLIYRKPEENGVKAACDELGITL---IAYCPIAQG 258 (310)
Q Consensus 184 ~~L~~~G~ir~iGvS~~~~~~l~-~~~~~~~~~~~~~-~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v---~a~~pl~~G 258 (310)
.+++++-.||.+|+=.-+-..+. ++.+.+ +-+. +.+.+.+++.+. .-=.|-++|-.| |.++||. |
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L---~k~~~~l~~I~~HLGNG------ASicAiknGkSvDTSMGfTPLe-G 233 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKYVSQRAAEIL---GKPLEDLNLITCHLGNG------ASICAIKNGKSVDTSMGFTPLE-G 233 (396)
T ss_pred HHHHHhcCceecccCccchHHHHHHHHHHh---CCCccccCEEEEEecCc------hhhhhhhCCeeeccCCCCCccc-c
Confidence 56788889999999877655544 333332 2221 677777777663 333455667766 7889996 6
Q ss_pred ccCCCC
Q 021629 259 ALTGKY 264 (310)
Q Consensus 259 ~Ltg~~ 264 (310)
+.-|.+
T Consensus 234 l~MGTR 239 (396)
T COG0282 234 LMMGTR 239 (396)
T ss_pred eeccCC
Confidence 665543
No 381
>PTZ00300 pyruvate kinase; Provisional
Probab=22.73 E-value=7.5e+02 Score=24.42 Aligned_cols=90 Identities=9% Similarity=0.161 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHH--HHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021629 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (310)
Q Consensus 78 ~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~--lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL 155 (310)
.+.++.++++|+.++-.+..-.. |++ +-+++.... +++.|..|+- +++.+ +.+++.+
T Consensus 150 ~~dI~~ald~gvd~I~~SfVrsa---------eDv~~vr~~l~~~~-----~~~~IiaKIE------t~eav-~nldeI~ 208 (454)
T PTZ00300 150 CADLQFGVEQGVDMIFASFIRSA---------EQVGEVRKALGAKG-----GDIMIICKIE------NHQGV-QNIDSII 208 (454)
T ss_pred HHHHHHHHHCCCCEEEECCCCCH---------HHHHHHHHHHHhcC-----CCceEEEEEC------CHHHH-HhHHHHH
Confidence 34578899999999875544322 322 234443332 5789999993 34444 3566666
Q ss_pred HhhCCCccceEEeecCCC---CChHHHHHH----HHHHHHcCccc
Q 021629 156 FRLGLSSVELYQLHWAGI---WGNEGFIDG----LGDAVEQGLVK 193 (310)
Q Consensus 156 ~~L~~d~iDl~~lH~pd~---~~~~~~~~~----L~~L~~~G~ir 193 (310)
+..|-+++-+-|- .+.+++... +...++.||--
T Consensus 209 -----~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpv 248 (454)
T PTZ00300 209 -----EESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPV 248 (454)
T ss_pred -----HhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCE
Confidence 5679999988764 444444333 33445666633
No 382
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.62 E-value=5.7e+02 Score=23.05 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCc
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAE 96 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~ 96 (310)
+.++..++.....+.||..|+...
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccC
Confidence 457777788888889999999864
No 383
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.57 E-value=1.8e+02 Score=26.99 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeeec-cC--------------c-cccC--ccccchhHHHHHcCceEEEc
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQVN-YS--------------L-IYRK--PEENGVKAACDELGITLIAY 252 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~-~n--------------~-~~~~--~~~~~~l~~~~~~gi~v~a~ 252 (310)
+.+.+.++++..++.++|++++.+. |. . +++. +.-.++++..+++|+.++.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTY 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEE
Confidence 6777888888888888888877663 10 0 1111 12226889999999998765
No 384
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=22.48 E-value=4.4e+02 Score=21.60 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=15.8
Q ss_pred cceEEeecCCCCChHHHHHHHHHHHHcC
Q 021629 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~L~~~G 190 (310)
++++.+-.-+....+++++.|.++.++|
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAEA 196 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3444444444455667777766666553
No 385
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=22.46 E-value=6.6e+02 Score=23.67 Aligned_cols=114 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCeEECC---------cCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021629 78 KAAFDTSLDNGITFFDTA---------EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (310)
Q Consensus 78 ~~~l~~A~~~Gin~~DtA---------~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (310)
.+.++...++|+|.+... ..++.+.+ .+.+-++++...... -+.+-+.-=+|. .+.+.+.++
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s------~~~~~~a~~~l~~~g-~~~v~~dli~Gl--Pgqt~~~~~ 178 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT------PGRAVAAAREARAAG-FEHVNLDLIYGT--PGESDDDWR 178 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC------HHHHHHHHHHHHHcC-CCcEEEEEeccC--CCCCHHHHH
Q ss_pred HHHHHHHHhhCCCccceEEee-----------------cCCCCChHHHHHHHHHHHHcCcccEEEeecCC
Q 021629 149 AALKDSLFRLGLSSVELYQLH-----------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH-----------------~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 201 (310)
+.++..++ |+.+++.+|.+. .|+.....+.+..+.+..++.--..+++|||.
T Consensus 179 ~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~fa 247 (375)
T PRK05628 179 ASLDAALE-AGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSNWA 247 (375)
T ss_pred HHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeecccc
No 386
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=22.34 E-value=6.7e+02 Score=23.75 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=6.5
Q ss_pred hhHHHHHcCceEEE
Q 021629 238 VKAACDELGITLIA 251 (310)
Q Consensus 238 ~l~~~~~~gi~v~a 251 (310)
+.+.|+++|+-++.
T Consensus 158 I~~la~~~g~~vvv 171 (382)
T TIGR02080 158 ICHLAKAVGAVVVV 171 (382)
T ss_pred HHHHHHHcCCEEEE
Confidence 44444444444443
No 387
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=22.30 E-value=5.8e+02 Score=23.30 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred HHHHHHHHcCcccEEEeec-CCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccc---cchhHHHHHcCceEEEccccc
Q 021629 181 DGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIA 256 (310)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~ 256 (310)
+.|...++.| -.||--| ++.+.++.+++.+++.+ .|.++|+.-+-+.....+ .-+..++++..|+|..+ |.
T Consensus 8 ~~l~~A~~~~--yaV~Afn~~n~e~~~avi~aAe~~~-~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lH--lD 82 (281)
T PRK06806 8 ELLKKANQEN--YGVGAFSVANMEMVMGAIKAAEELN-SPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVH--FD 82 (281)
T ss_pred HHHHHHHHCC--ceEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEE--CC
Confidence 4566677777 4555444 47788888888887776 466666644333221111 12456777778876543 22
Q ss_pred ccccCCCCCCCCCCCCCCCCCcc--hHhHhhHHHHHHHHHHHHHhcCCCc
Q 021629 257 QGALTGKYTPQNPPTGPRGRIYT--AEYLRNLQPLLNRIKELGENYSKTS 304 (310)
Q Consensus 257 ~G~Ltg~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~l~~iA~~~g~s~ 304 (310)
+|.--. ........+...-.++ ....+++.+...++.++|+++|++.
T Consensus 83 H~~~~e-~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 83 HGMTFE-KIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CCCCHH-HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 221000 0000000111111111 1124567777889999999999874
No 388
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=22.29 E-value=3.6e+02 Score=20.62 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=52.9
Q ss_pred chhhHHHHHHHHHHHHHCCCCe-EECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021629 70 DDRKMKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~-~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (310)
++.+.++..+-|+..+..|.+. ++-+ + ..+ +|....-..|+... ...++..+.
T Consensus 10 p~lt~~~i~~QI~yll~qG~~~~lE~a----d-----------------~~~----~~~~yW~mwklP~f-~~~d~~~Vl 63 (99)
T cd03527 10 PPLTDEQIAKQIDYIISNGWAPCLEFT----E-----------------PEH----YDNRYWTMWKLPMF-GCTDPAQVL 63 (99)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcc----c-----------------CCC----CCCCEEeeccCCCC-CCCCHHHHH
Confidence 4567789999999999999762 2211 1 111 25778888888653 257899999
Q ss_pred HHHHHHHHhhCCCccceEEee
Q 021629 149 AALKDSLFRLGLSSVELYQLH 169 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH 169 (310)
..|++.++...-+||-|+=+.
T Consensus 64 ~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 64 REIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred HHHHHHHHHCCCCeEEEEEEe
Confidence 999999999888887665444
No 389
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.28 E-value=7.2e+02 Score=24.05 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCccceEEeecCCC--------CChHHHHHHHHHHHHcCcc-----cEEEeecCCHHHHHHHHHHHHhc
Q 021629 150 ALKDSLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV-----KAVGVSNYSEKRLRNAYEKLKKR 215 (310)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lH~pd~--------~~~~~~~~~L~~L~~~G~i-----r~iGvS~~~~~~l~~~~~~~~~~ 215 (310)
..-+.|+++|+++|.+=.=..-+. ...+++.++++.+++.|.- --+|+-+.+.+.+.+.++.+...
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l 220 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVY 220 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 344555666766655422222111 3456777777777777741 12466666667776666665443
No 390
>PRK04527 argininosuccinate synthase; Provisional
Probab=22.22 E-value=5.9e+02 Score=24.71 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCC---eEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021629 75 KAAKAAFDTSLDNGIT---FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (310)
Q Consensus 75 ~~~~~~l~~A~~~Gin---~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (310)
++..++-..|.+.|+. .+|+-..|- |.++-.+++...-. ....-+.| . ++-.+-+.+
T Consensus 42 ~El~~a~~~A~~lG~~~~~viD~~eef~----------e~vi~p~i~aNa~y--~G~yPl~~-------~-nR~~~~~~l 101 (400)
T PRK04527 42 EERDFIEKRAAELGAASHVTVDGGPAIW----------EGFVKPLVWAGEGY--QGQYPLLV-------S-DRYLIVDAA 101 (400)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCHHHHH----------HHHHHHHHhcchhh--cCCCCCcc-------c-cHHHHHHHH
Confidence 5666677788899985 567665553 66777777542110 01111111 1 344455566
Q ss_pred HHHHHhhCCCccceEEeecCC
Q 021629 152 KDSLFRLGLSSVELYQLHWAG 172 (310)
Q Consensus 152 ~~sL~~L~~d~iDl~~lH~pd 172 (310)
-+..+.+|.++ ..|.-.
T Consensus 102 ~e~A~~~G~~~----IA~G~t 118 (400)
T PRK04527 102 LKRAEELGTRI----IAHGCT 118 (400)
T ss_pred HHHHHHCCCCE----EEecCc
Confidence 66667788764 567653
No 391
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.92 E-value=6.7e+02 Score=23.59 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHcCc--ccE---EEeecCCHHHHHHHHHHHH
Q 021629 176 NEGFIDGLGDAVEQGL--VKA---VGVSNYSEKRLRNAYEKLK 213 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~--ir~---iGvS~~~~~~l~~~~~~~~ 213 (310)
.++++++++.+++.|. |.. +|+.+-+.+.+.+.++.+.
T Consensus 135 ~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~ 177 (377)
T PRK08599 135 EEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKAL 177 (377)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHH
Confidence 4566666666666662 211 3444555555555554443
No 392
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.88 E-value=6.6e+02 Score=23.44 Aligned_cols=112 Identities=10% Similarity=-0.024 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCC-CccceEEeecCCC--CChHHHHHHHHHHHHcCcccEEEeecCC----HHHH-HHHHHHHHhcCCCe
Q 021629 148 LAALKDSLFRLGL-SSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS----EKRL-RNAYEKLKKRGIPL 219 (310)
Q Consensus 148 ~~~l~~sL~~L~~-d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~----~~~l-~~~~~~~~~~~~~~ 219 (310)
.+.+++.++.+.. .-+.-+.+-.-|+ .+...+.+.++.+++-+.++.|.++.-. +..+ .++++.++..+.+.
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~ 223 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQL 223 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcE
Confidence 3444454444431 1223344444444 2333466677777776666666554321 1111 13333344333332
Q ss_pred eeeeeccCcc-ccCccccchhHHHHHcCceEEEccccccccc
Q 021629 220 ASNQVNYSLI-YRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (310)
Q Consensus 220 ~~~q~~~n~~-~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L 260 (310)
.. -...|-- ....+-...++.+++.||.+...+++..|..
T Consensus 224 ~~-vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvn 264 (331)
T TIGR00238 224 ML-VTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGVN 264 (331)
T ss_pred EE-EccCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCcC
Confidence 21 2222211 1111112456777899999999999988853
No 393
>PRK08445 hypothetical protein; Provisional
Probab=21.87 E-value=6.7e+02 Score=23.57 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.3
Q ss_pred chhHHHHHcCceEEEccccccc
Q 021629 237 GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G 258 (310)
+.+..+++.||.+.+..-++.|
T Consensus 186 ~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 186 EVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred HHHHHHHHcCCeeeeEEEecCC
Confidence 5899999999999886666543
No 394
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.78 E-value=4.3e+02 Score=21.31 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 75 KAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 75 ~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
.....++..+++ +|+..+|+...-.. |+++-.+.+..+ +=+-+++-.+ .+...+++ +-+
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~---------e~~v~aa~~~~a-----diVglS~l~~-----~~~~~~~~-~~~ 74 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQ---------EEFIKAAIETKA-----DAILVSSLYG-----HGEIDCKG-LRQ 74 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEecccc-----cCHHHHHH-HHH
Confidence 445577777774 89999998765544 888877766543 4455565553 33443443 555
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHH
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~ 208 (310)
.|+.-|.+.+ .+++=..-..+.++.-+.-++|++.|--+-+|=+. +.+++...
T Consensus 75 ~l~~~gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt-~~~~iv~~ 127 (134)
T TIGR01501 75 KCDEAGLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT-PPEVVIAD 127 (134)
T ss_pred HHHHCCCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC-CHHHHHHH
Confidence 5666776432 23233311123333333445678888444444333 44544444
No 395
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.76 E-value=6.7e+02 Score=23.51 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcCcCC--------------CCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCC
Q 021629 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS--------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA 137 (310)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~--------------g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~ 137 (310)
.+.+...++.+++-+.|+.|+=|...-.. |.. --.+-.+| +.+.+.+ ..++|+|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~--~~~n~~LL-~~va~~g-----kPvilstG~-- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASF--EITDLPLI-RYVAKTG-----KPIIMSTGI-- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCc--cccCHHHH-HHHHhcC-----CcEEEECCC--
Confidence 34567778888888999998866533211 000 00112222 2222221 345544433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCC--hHH-HHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHh
Q 021629 138 LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEG-FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (310)
Q Consensus 138 ~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~--~~~-~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (310)
.+.+.+..+++...+. |. -|+.++|....++ .++ -+.+|..|++.=. .-||+|.|+.....-+..++
T Consensus 144 ----~t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva-- 213 (327)
T TIGR03586 144 ----ATLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA-- 213 (327)
T ss_pred ----CCHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH--
Confidence 3678888888877643 32 3799999765533 222 2555555555433 46999999766544333332
Q ss_pred cCCCeeeeeeccCc
Q 021629 215 RGIPLASNQVNYSL 228 (310)
Q Consensus 215 ~~~~~~~~q~~~n~ 228 (310)
. .-.+++-.+++
T Consensus 214 ~--GA~iIEkH~tl 225 (327)
T TIGR03586 214 L--GACVIEKHFTL 225 (327)
T ss_pred c--CCCEEEeCCCh
Confidence 2 23455555554
No 396
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=21.75 E-value=93 Score=30.21 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=29.1
Q ss_pred CcccccceecccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCC--eEECCcC
Q 021629 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEV 97 (310)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DtA~~ 97 (310)
|....+|-||.-.+|.. -|... ..+.-.+.+.+++...+++|++ |+||+-.
T Consensus 79 g~~~~~iiLGGDHLGP~-~w~~l-paeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ 131 (424)
T PF08013_consen 79 GFPRDRIILGGDHLGPN-PWQHL-PAEEAMAKAKELIRAYVEAGFTKIHLDCSMD 131 (424)
T ss_dssp T--GGGEEEEEEEESSC-CCTTS-BHHHHHHHHHHHHHHHHCTT--EEEE---C-
T ss_pred CCchhhEEecCCCCCcc-cccCC-CHHHHHHHHHHHHHHHHHcCCceEeecCCCC
Confidence 56667788988887764 23221 1122345788999999999999 8898744
No 397
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.69 E-value=5.8e+02 Score=22.74 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=80.3
Q ss_pred eeecCCCCccccccee--cccccCCCCCCCCCcCchhhHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHH
Q 021629 38 KVKLGGSDLKVTKLGV--GAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (310)
Q Consensus 38 ~~~Lg~tg~~vs~lgl--G~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~ 115 (310)
-++||. |+.++.|.+ |-..-| ..--++.++.=+++.|.+..= |-. |.-+-+
T Consensus 18 DkrLGG-GiP~GsL~lIEGd~~tG-------------KSvLsqr~~YG~L~~g~~v~y----vsT---------e~T~re 70 (235)
T COG2874 18 DKRLGG-GIPVGSLILIEGDNGTG-------------KSVLSQRFAYGFLMNGYRVTY----VST---------ELTVRE 70 (235)
T ss_pred HhhccC-CCccCeEEEEECCCCcc-------------HHHHHHHHHHHHHhCCceEEE----EEe---------chhHHH
Confidence 367887 888887764 433222 226778888889999987542 111 555555
Q ss_pred HHhhccCC-CCCCcE-------EEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCC---CC----hHHHH
Q 021629 116 FIKERKQR-DPEVEV-------TVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WG----NEGFI 180 (310)
Q Consensus 116 al~~~~~~-~~R~~~-------~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~---~~----~~~~~ 180 (310)
+|+....- .+=.+. |+.+.+.+ ...+++.-+.-++..++....-.-|++.+...+. ++ ..+.+
T Consensus 71 fi~qm~sl~ydv~~~~l~G~l~~~~~~~~~--~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm 148 (235)
T COG2874 71 FIKQMESLSYDVSDFLLSGRLLFFPVNLEP--VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFM 148 (235)
T ss_pred HHHHHHhcCCCchHHHhcceeEEEEecccc--cccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHH
Confidence 55532100 001222 33333322 2345556666677777777777789999998765 22 34566
Q ss_pred HHHHHHHHcCcccEEEeecC
Q 021629 181 DGLGDAVEQGLVKAVGVSNY 200 (310)
Q Consensus 181 ~~L~~L~~~G~ir~iGvS~~ 200 (310)
..+..|.++||+--+-+..+
T Consensus 149 ~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 149 TFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred HHHHHHHhCCCEEEEEeChh
Confidence 66777778999887777554
No 398
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=21.69 E-value=5.1e+02 Score=23.45 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHHHH--CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021629 71 DRKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (310)
Q Consensus 71 ~~~~~~~~~~l~~A~~--~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (310)
+.++++..++++.|.+ .|+.-+=..+.| -....+.|+... -.++-|+|=++-.....+.+.-.
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----------v~~a~~~L~~~~----~~~vkv~tVigFP~G~~~t~~K~ 86 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRF-----------IPIARKTLREQG----TPEIRIATVTNFPHGNDDIDIAL 86 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHH-----------HHHHHHHhcccC----CCCCeEEEEecCCCCCCcHHHHH
Confidence 3467999999999998 465544333332 334445554321 01467777776332334455555
Q ss_pred HHHHHHHHhhCCCccceEEeec-CCCCChHHHHHHHHHHHHc---Cc-ccEEEeec-CCHHH-HHHHHHHHHhcCCCeee
Q 021629 149 AALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQ---GL-VKAVGVSN-YSEKR-LRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~-pd~~~~~~~~~~L~~L~~~---G~-ir~iGvS~-~~~~~-l~~~~~~~~~~~~~~~~ 221 (310)
...+..++ .|.|-||+++==. .-.-+.+.+.+.+.++++. |+ ++-|=-+. .+.++ +.++.+.+...|..|.-
T Consensus 87 ~Ea~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVK 165 (257)
T PRK05283 87 AETRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIK 165 (257)
T ss_pred HHHHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEE
Confidence 55666666 4999999865221 1112345556666666653 33 44333222 35553 77777777666655544
Q ss_pred eeeccCccc
Q 021629 222 NQVNYSLIY 230 (310)
Q Consensus 222 ~q~~~n~~~ 230 (310)
--.-|..-.
T Consensus 166 TSTGf~~~g 174 (257)
T PRK05283 166 TSTGKVPVN 174 (257)
T ss_pred cCCCCCCCC
Confidence 444554433
No 399
>PRK07360 FO synthase subunit 2; Reviewed
Probab=21.68 E-value=6.9e+02 Score=23.64 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=16.8
Q ss_pred chhHHHHHcCceEEEccccccc
Q 021629 237 GVKAACDELGITLIAYCPIAQG 258 (310)
Q Consensus 237 ~~l~~~~~~gi~v~a~~pl~~G 258 (310)
+.++.+++.|+.+-+...++.|
T Consensus 205 ~~i~~a~~~Gl~~~sg~i~G~g 226 (371)
T PRK07360 205 EIVKTAHKLGLPTTSTMMYGHV 226 (371)
T ss_pred HHHHHHHHcCCCceeeEEeeCC
Confidence 5788899999988776666544
No 400
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=21.66 E-value=5.4e+02 Score=22.39 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCC------HHHHHHHHHHHHhc
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKKR 215 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~------~~~l~~~~~~~~~~ 215 (310)
.+.+.-.+-+.....+++.||||+=+-. .++....+.+..+++.++-|+ |-|+ .+.+...++.+...
T Consensus 75 ~~~~~~~~ll~~~~~~~~~d~vDiEl~~------~~~~~~~l~~~~~~~~~kvI~-S~H~f~~tp~~~~l~~~~~~~~~~ 147 (228)
T TIGR01093 75 GNEEEYLEELKRAADSPGPDFVDIELFL------PDDAVKELINIAKKGGTKIIM-SYHDFQKTPSWEEIVERLEKALSY 147 (228)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccC------CHHHHHHHHHHHHHCCCEEEE-eccCCCCCCCHHHHHHHHHHHHHh
Confidence 4444444456666688899999973211 233444444444567788777 5442 34455555555543
Q ss_pred CCCeeeeeeccCccccCccccchhHHHHH----cCceEEEcc
Q 021629 216 GIPLASNQVNYSLIYRKPEENGVKAACDE----LGITLIAYC 253 (310)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~~l~~~~~----~gi~v~a~~ 253 (310)
| .+++-+-..+-+....- .++.+.++ ..+.+++++
T Consensus 148 g--aDivKia~~a~~~~D~~-~ll~~~~~~~~~~~~p~i~~~ 186 (228)
T TIGR01093 148 G--ADIVKIAVMANSKEDVL-TLLEITNKVDEHADVPLITMS 186 (228)
T ss_pred C--CCEEEEEeccCCHHHHH-HHHHHHHHHHhcCCCCEEEEe
Confidence 3 34443333332222111 25555433 246666655
No 401
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=21.59 E-value=1.9e+02 Score=22.17 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCCCccceEEeecCCC--CChHHHHHHHHHHHHcC
Q 021629 149 AALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~pd~--~~~~~~~~~L~~L~~~G 190 (310)
..+++.|+.+. ..|.+++++.+. -...+++..+..+.+.|
T Consensus 43 ~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g 84 (126)
T cd03768 43 PELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG 84 (126)
T ss_pred HHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC
Confidence 34444455444 457777777665 23455566666665555
No 402
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=21.56 E-value=7.8e+02 Score=24.17 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=57.0
Q ss_pred HHHHHHHHhhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhC---C--CccceEEeecCCCCC-----hHH
Q 021629 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG---L--SSVELYQLHWAGIWG-----NEG 178 (310)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~---~--d~iDl~~lH~pd~~~-----~~~ 178 (310)
|+-|-++|+....+.+ .+=++|.|-+..--.+-|.+.+.+.+ -++++ . ..+.++.+|-|+... .+.
T Consensus 77 ~~~L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~v~~~~---~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~ 153 (461)
T TIGR02931 77 LDRVEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVDGLISKL---NEELLKEKFPDREVHLIPIHTPSFVGSMITGYDV 153 (461)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHHHHHHHH---HhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHH
Confidence 7777788877644332 24456666663211123333333333 33331 1 135789999888732 333
Q ss_pred HHHHHH-HHHH----cCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 179 FIDGLG-DAVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 179 ~~~~L~-~L~~----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
++++|- .+.. .++|.-||-. .++..+.++.+.++..|+.+.
T Consensus 154 a~~ali~~~~~~~~~~~~VNlig~~-~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 154 AVHDFVKHFAKKDKPNDKINLITGW-VNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred HHHHHHHHHccCCCCCCcEEEECCC-CChhhHHHHHHHHHHcCCceE
Confidence 443333 2222 4668888854 345566666666777776544
No 403
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=21.56 E-value=4.1e+02 Score=28.62 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHhhCC--------------------------CccceEEeecCCC-CC---hHHHHHHHHHHHHcC
Q 021629 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI-WG---NEGFIDGLGDAVEQG 190 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~--------------------------d~iDl~~lH~pd~-~~---~~~~~~~L~~L~~~G 190 (310)
+..+..+.+.++..|+.++. ....+++|..|.. .+ ...+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44566788888888887763 4678889998865 33 468999999999999
Q ss_pred cccEEEeecCCHHHHHHHHHH
Q 021629 191 LVKAVGVSNYSEKRLRNAYEK 211 (310)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~~ 211 (310)
+ +|=+.+|+-++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 8 888999998888877443
No 404
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=21.47 E-value=6.7e+02 Score=23.84 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCC--
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP-- 218 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~-- 218 (310)
..+++.++.-+.+.|.+.|++.-| ...+-+.|-.. -..|+.+|...++...++..+...+.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~-----------A~~vA~~lv~a------d~~G~~SHGv~r~p~yi~~l~~G~i~~~ 67 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED-----------ARAVADVLVAA------DLRGVDSHGVGRLPGYVRRLKAGKINPD 67 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH-----------HHHHHHHHHHH------HhcCCcccchHHHHHHHHHHHcCCcCCC
Confidence 467899999999999999985322 12222322222 23567788888888887776665543
Q ss_pred --eeeeeeccCccccCcc-----------ccchhHHHHHcCceEEEc-ccccccc
Q 021629 219 --LASNQVNYSLIYRKPE-----------ENGVKAACDELGITLIAY-CPIAQGA 259 (310)
Q Consensus 219 --~~~~q~~~n~~~~~~~-----------~~~~l~~~~~~gi~v~a~-~pl~~G~ 259 (310)
|.+++..-....-... -...++.|+++||++++- ..-..|.
T Consensus 68 a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav~ns~H~g~ 122 (349)
T COG2055 68 AEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAVRNSNHFGA 122 (349)
T ss_pred CceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEEecCCccch
Confidence 3333221111111100 003789999999999764 4444443
No 405
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.46 E-value=7.6e+02 Score=24.02 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCC-CCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR-DPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~-~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
..++.+.+..|++.|- .+.|+.. .|...+-+.+.+.+.+.... ...+|+||++-+. .+||
T Consensus 80 s~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~------------qAIe 140 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS------------QAIE 140 (447)
T ss_pred CHHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccch------------HHHH
Confidence 3778888888998883 4467653 22334466666665443211 2478999988763 3344
Q ss_pred HHHHhhCCCccceEEeecCCC----------------------CChHHHHHHHHHHHHcCcccEEEeec-------CCHH
Q 021629 153 DSLFRLGLSSVELYQLHWAGI----------------------WGNEGFIDGLGDAVEQGLVKAVGVSN-------YSEK 203 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd~----------------------~~~~~~~~~L~~L~~~G~ir~iGvS~-------~~~~ 203 (310)
-.+..|-.---. +++-+|.. .+.+=-++.++.|.++.-+.-+=+-. |+.+
T Consensus 141 ~~i~~LA~p~aN-ILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~ 219 (447)
T KOG0259|consen 141 LAISSLANPGAN-ILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSED 219 (447)
T ss_pred HHHHHhcCCCCc-eecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHH
Confidence 444444322222 22222221 01112256677777776655443321 4567
Q ss_pred HHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHH-cCceEEEcccccccccC
Q 021629 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE-LGITLIAYCPIAQGALT 261 (310)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~-~gi~v~a~~pl~~G~Lt 261 (310)
+++++++.+++.++.+...++.-++.....- .++..+= .-+.|++-..+..|++.
T Consensus 220 HL~kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~V 275 (447)
T KOG0259|consen 220 HLKKIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIV 275 (447)
T ss_pred HHHHHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeeccccccccc
Confidence 7888888777777766665555554443321 3333322 24566665555555543
No 406
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=21.41 E-value=2.3e+02 Score=22.16 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecC----CCCC----CCCCHHHHHHHHHHHHHhhC
Q 021629 88 GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF----AALP----WRLGRQSVLAALKDSLFRLG 159 (310)
Q Consensus 88 Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~----~~~~----~~~~~~~i~~~l~~sL~~L~ 159 (310)
|.--+|..++|..|.+ .|+.++-.. .+..+...|+ |+.. ...........+...|+.||
T Consensus 12 ~~y~l~n~Pf~a~glA---------~gDvV~~~~----~~g~~~~~~~v~~sGnsTiRv~~~~~~~~~~~~v~~~l~~lG 78 (117)
T PF14085_consen 12 DTYRLDNIPFFAYGLA---------LGDVVRAEP----DDGELWFQKVVESSGNSTIRVIFDDPGPDDIEAVREELEALG 78 (117)
T ss_pred CEEEEEecccccCCCC---------CCCEEEEEe----CCCeEEEEEEEecCCCEEEEEEEcCCcchhHHHHHHHHHHcC
Confidence 3445788888888766 444444333 1233433333 2210 01112256677777788888
Q ss_pred CC----ccceEEeecCCCCChHHHHHHHHHHHHcCccc
Q 021629 160 LS----SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (310)
Q Consensus 160 ~d----~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir 193 (310)
.. .-.++-+.-|...+...+-+.|..+.++|.+.
T Consensus 79 ~~~E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g~~~ 116 (117)
T PF14085_consen 79 CTVEGFSERMLAVDVPPSVDFDAIKDYLDRGEEQGWWD 116 (117)
T ss_pred CeEEccCCCEEEEEECCCCCHHHHHHHHHhhhhcCccc
Confidence 63 22566666677778899999999999998764
No 407
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=21.26 E-value=2.8e+02 Score=21.85 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCc
Q 021629 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (310)
Q Consensus 175 ~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi 247 (310)
...++.+.|++|++.| ++-+=+||.+...+...++...-.. .|+.+-.........+...-+...+++.|+
T Consensus 78 ~~~~~~~~L~~l~~~~-~~~~i~Sn~~~~~~~~~l~~~~~~~-~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~ 148 (176)
T PF13419_consen 78 PYPGVRELLERLKAKG-IPLVIVSNGSRERIERVLERLGLDD-YFDEIISSDDVGSRKPDPDAYRRALEKLGI 148 (176)
T ss_dssp ESTTHHHHHHHHHHTT-SEEEEEESSEHHHHHHHHHHTTHGG-GCSEEEEGGGSSSSTTSHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhhccccc-ceeEEeecCCccccccccccccccc-ccccccccchhhhhhhHHHHHHHHHHHcCC
Confidence 3456888999998776 5666688988888877755432111 144333333233333333235555566654
No 408
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=21.25 E-value=1.5e+02 Score=28.41 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhccCCCCCCcEEEEecCCC--------CCCCCCH----HHHHHHHHHHHHhhCCCccceEEeecCCC
Q 021629 109 SETLLGRFIKERKQRDPEVEVTVATKFAA--------LPWRLGR----QSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (310)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~~~--------~~~~~~~----~~i~~~l~~sL~~L~~d~iDl~~lH~pd~ 173 (310)
++..|.+.++... ..=+||-||+-. .+..++. +.|++.+.+.|+.-|+....+|++...+.
T Consensus 129 ndv~La~~i~~~g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRMG----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHcC----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 4778899998876 345778999853 1223333 46788888899999999999999998765
No 409
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.24 E-value=6e+02 Score=22.76 Aligned_cols=125 Identities=13% Similarity=0.051 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHCCCCeE--ECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021629 73 KMKAAKAAFDTSLDNGITFF--DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~--DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (310)
+.++..+.++.+.+.|++.| -++..+.... ..++.+-+..+... +-.+.+....+ ..+.+
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~-----~~~~~~~~i~~~~~----~~~i~~~~~~g----~~~~e----- 124 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDR-----EFMEYVEAMVQIVE----EMGLKTCATLG----LLDPE----- 124 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChH-----HHHHHHHHHHHHHH----hCCCeEEecCC----CCCHH-----
Confidence 45666666777778898753 2222222210 11334433322211 11333333232 23333
Q ss_pred HHHHHHhhCCCccceEEeecCC-------CCChHHHHHHHHHHHHcCccc----EEEeecCCHHHHHHHHHHHHhcC
Q 021629 151 LKDSLFRLGLSSVELYQLHWAG-------IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRG 216 (310)
Q Consensus 151 l~~sL~~L~~d~iDl~~lH~pd-------~~~~~~~~~~L~~L~~~G~ir----~iGvS~~~~~~l~~~~~~~~~~~ 216 (310)
.-+.|+..|++.+-+-+=..++ ....++.+++++.+++.|.-- -+|+ +.+.+.+.+.+..+...+
T Consensus 125 ~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~ 200 (296)
T TIGR00433 125 QAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLALALANLP 200 (296)
T ss_pred HHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHHHHHhCC
Confidence 3345677787664332111111 134677888888888888421 3666 556777776666655443
No 410
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=21.24 E-value=4.6e+02 Score=21.36 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHCCCCeEEC
Q 021629 74 MKAAKAAFDTSLDNGITFFDT 94 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~Dt 94 (310)
+|...+.++.|++.|.+.|++
T Consensus 12 pent~~a~~~a~~~g~~~iE~ 32 (189)
T cd08556 12 PENTLAAFRKALEAGADGVEL 32 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEE
Confidence 378888999999999998874
No 411
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.16 E-value=4.4e+02 Score=24.33 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHHHHHcCcccEEEeecC--C-------------HHHHHHHHHHHHhcCCC-eeeeeeccCccccCccccchhHHHHHc
Q 021629 182 GLGDAVEQGLVKAVGVSNY--S-------------EKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDEL 245 (310)
Q Consensus 182 ~L~~L~~~G~ir~iGvS~~--~-------------~~~l~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~~l~~~~~~ 245 (310)
.++.|++.|. ..|.||-. + .+.+.+.++.+...+++ +.++-+-..-.+.. +-.+++++++++
T Consensus 104 ~~~~L~~~gl-~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~-ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 HAKDLKEAGL-KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDD-EIVDLAEFAKER 181 (334)
T ss_pred HHHHHHHcCC-CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHH-HHHHHHHHHHhc
Confidence 5677888884 44555532 2 24455555566666664 33221111001111 112589999999
Q ss_pred Cce--EEEccccccc
Q 021629 246 GIT--LIAYCPIAQG 258 (310)
Q Consensus 246 gi~--v~a~~pl~~G 258 (310)
|+. ++.+.|++.+
T Consensus 182 gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 182 GVTLRFIELMPLGEG 196 (334)
T ss_pred CCeEEEEeccCCCCC
Confidence 876 4667887654
No 412
>PRK11059 regulatory protein CsrD; Provisional
Probab=21.15 E-value=3.3e+02 Score=27.79 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHcCcccEEEeecCCH--HHHHHHHHHHHhcCCCeeeeeeccCcccc---Cccc----cchhHHHHHcC
Q 021629 176 NEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYR---KPEE----NGVKAACDELG 246 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~~~~~q~~~n~~~~---~~~~----~~~l~~~~~~g 246 (310)
.+.+...+..|++.| -.|++.+|.. ..+..+.+ ++++++-+.-+++.. +.+. ..++..|+..|
T Consensus 532 ~~~~~~~l~~L~~~G--~~iaiddfG~g~~s~~~L~~------l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~ 603 (640)
T PRK11059 532 ISRLRPVLRMLRGLG--CRLAVDQAGLTVVSTSYIKE------LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTE 603 (640)
T ss_pred HHHHHHHHHHHHHCC--CEEEEECCCCCcccHHHHHh------CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCC
Confidence 466778888888888 4566666532 11222211 467777766655432 1111 14789999999
Q ss_pred ceEEEc
Q 021629 247 ITLIAY 252 (310)
Q Consensus 247 i~v~a~ 252 (310)
+.+++=
T Consensus 604 i~viAe 609 (640)
T PRK11059 604 TQVFAT 609 (640)
T ss_pred CeEEEE
Confidence 999883
No 413
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.15 E-value=5.3e+02 Score=25.87 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=55.7
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC-CccceEEeecCCCCC-----hHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-d~iDl~~lH~pd~~~-----~~~~~~~L 183 (310)
++-|-++|+......+.+=++|.|-+..- .--+.+..-+++.-+.... +-+++..+|-|+... .+.+++++
T Consensus 127 ~~~L~e~I~~~~~~y~P~~I~V~tTC~~e---vIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ai 203 (515)
T TIGR01286 127 LKNMVDGLQNCYALYKPKMIAVSTTCMAE---VIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGI 203 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHHH---HhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHH
Confidence 66777777765443334567777777421 1112222233333333322 236899999998732 23333333
Q ss_pred H-HHH----------HcCcccEEE-eecCCHHHHHHHHHHHHhcCCCeee
Q 021629 184 G-DAV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (310)
Q Consensus 184 ~-~L~----------~~G~ir~iG-vS~~~~~~l~~~~~~~~~~~~~~~~ 221 (310)
- .+. ..++|.-|| +..+ +..++++.+.++..|+++.+
T Consensus 204 l~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 204 LEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 2 222 136687774 4333 44556666666666665544
No 414
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=21.08 E-value=3.7e+02 Score=21.07 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=40.7
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCC---CccceEEeecCCC--CChHHHHHHHHHHHH
Q 021629 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (310)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lH~pd~--~~~~~~~~~L~~L~~ 188 (310)
+|=-+.|+=|+|. ...+..+++-+.++.+.+.- ..-|++++..+.. .+..++-+.|..|.+
T Consensus 43 ~R~G~~VsKKvG~---AV~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~ 108 (118)
T PRK00588 43 PRVGLIIAKSVGS---AVERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLR 108 (118)
T ss_pred CEEEEEEeeecCc---hhHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 3667899999874 46677777777777776542 2346666687754 456666666666654
No 415
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.07 E-value=2e+02 Score=23.36 Aligned_cols=81 Identities=10% Similarity=-0.008 Sum_probs=50.9
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHH
Q 021629 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (310)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~ 206 (310)
+++.|.--... .+.+.+.....++.+++++++..+|....... ..++++=+...+.++-++=.-|+..+|..+.++
T Consensus 34 ~e~LiVrGmsR--ed~d~Dd~~~el~s~ie~~~v~~ld~es~Eg~--elI~e~De~vr~~vei~te~~i~~d~~GfeRlK 109 (156)
T COG4077 34 DEMLIVRGMSR--EDMDADDEEVELYSSIEDYLVKKLDKESFEGV--ELIKEIDEFVRRIVEILTENPIYPDTFGFERLK 109 (156)
T ss_pred cceEEEecccc--cccCcchHHHHHHHHHHHhhHHHhCccCHHHH--HHHHHHHHHHHHHHHhhhcCCCccCcchHHHHH
Confidence 44544443332 35667778888999999999988884211110 112222233445556666677888888888888
Q ss_pred HHHHH
Q 021629 207 NAYEK 211 (310)
Q Consensus 207 ~~~~~ 211 (310)
+..+.
T Consensus 110 eslE~ 114 (156)
T COG4077 110 ESLEM 114 (156)
T ss_pred HHHHH
Confidence 88765
No 416
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.05 E-value=6.8e+02 Score=23.32 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHH-CCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (310)
Q Consensus 74 ~~~~~~~l~~A~~-~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (310)
.++..++++...+ .|++-+--+. |.... .+...+.+.++.......-..+-|.|+... .-+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl----~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~----~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLM----AKDHELEWLLKRLEEIPHLVRLRIGTRLPV----VIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Ccccc----CCHHHHHHHHHHHHhcCCccEEEeecCCCc----cCchhcCHHHH
Confidence 4666667766554 3676544321 22110 113233333333211001135667776632 22344444555
Q ss_pred HHHHhhCCCccceEEeecCC-CCChHHHHHHHHHHHHcCc
Q 021629 153 DSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQGL 191 (310)
Q Consensus 153 ~sL~~L~~d~iDl~~lH~pd-~~~~~~~~~~L~~L~~~G~ 191 (310)
+.|+..+...+. ..|.-. ..-.+++.++++.|++.|.
T Consensus 214 ~~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 214 ELLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCC
Confidence 566666654332 333211 1224667777777777773
No 417
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.02 E-value=5.5e+02 Score=22.22 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhCCCc--cceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCee
Q 021629 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (310)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~--iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (310)
...+.+.+++.+++++..+ +++++...- .+.+...+.++.+..++ +..|=+...+...+...++.+...++|+.
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV 89 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVV 89 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEE
Confidence 3456677777777775443 343333221 22333444444454443 45555554444434343333444455533
No 418
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=20.94 E-value=8.3e+02 Score=24.26 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh-CCCccceEEee--cCCCCChHHHHHHHHHHHHcCccc-EEEeec------------C
Q 021629 137 ALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVK-AVGVSN------------Y 200 (310)
Q Consensus 137 ~~~~~~~~~~i~~~l~~sL~~L-~~d~iDl~~lH--~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~------------~ 200 (310)
.+|...+++.+.+-++...+.+ +++.+--+.+- +|+..+ -+.|+.|++.|..+ +||+=+ |
T Consensus 227 GTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it----~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~h 302 (488)
T PRK08207 227 GTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTIT----EEKLEVLKKYGVDRISINPQTMNDETLKAIGRHH 302 (488)
T ss_pred CCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCC----HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCC
Confidence 3444456777777777766665 55444344443 455432 23456667777432 344444 4
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeeeccCccccCccc-cchhHHHHHcCceEEEcccc
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPI 255 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~l~~~~~~gi~v~a~~pl 255 (310)
+.+++.++++.++..|++...+.+.+.+-....++ ...++.+.+.++.-+...+|
T Consensus 303 t~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 303 TVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 45667777777777665433334444442222221 23567777776655544444
No 419
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.92 E-value=4.7e+02 Score=23.26 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHhhCC--------------------------CccceEEeecCCC-CC---hHHHHHHHHHHHHcC
Q 021629 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI-WG---NEGFIDGLGDAVEQG 190 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~--------------------------d~iDl~~lH~pd~-~~---~~~~~~~L~~L~~~G 190 (310)
+.+...+++.+++.-++|+. -..+++.+..|-. .+ ...+-+.+.+++++|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 34566677777777777764 2234555554433 22 457788889999999
Q ss_pred cccEEEeecCCHHHHHHHH
Q 021629 191 LVKAVGVSNYSEKRLRNAY 209 (310)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~ 209 (310)
|.+=+|+|.-+.++++.
T Consensus 184 --r~viFSSH~m~EvealC 200 (245)
T COG4555 184 --RAVIFSSHIMQEVEALC 200 (245)
T ss_pred --cEEEEecccHHHHHHhh
Confidence 66788999888877773
No 420
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.83 E-value=53 Score=35.85 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCcccEE-E-eecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCceEEEcc
Q 021629 176 NEGFIDGLGDAVEQGLVKAV-G-VSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~i-G-vS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
...++++|.++++.|+|..| | ++. .-.|..-++.+ +.-.|-++.|-+.+....-...+.+|++++++...+-
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGD--Lg~Id~kYDvA----IsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi 672 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGD--LGAIDEKYDVA----ISTACARLDYIVVDTIETAQECINFLKKNNLGRATFI 672 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCcccccccc--ccccchHHHHH----HHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEE
Confidence 35789999999999988744 2 111 11122222221 1113445566555554332358999999999999999
Q ss_pred ccccc
Q 021629 254 PIAQG 258 (310)
Q Consensus 254 pl~~G 258 (310)
+|..=
T Consensus 673 ~LDki 677 (1293)
T KOG0996|consen 673 ILDKI 677 (1293)
T ss_pred ehHhh
Confidence 99753
No 421
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.77 E-value=76 Score=24.13 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccc
Q 021629 284 RNLQPLLNRIKELGENYSKTSTQSL 308 (310)
Q Consensus 284 ~~~~~~~~~l~~iA~~~g~s~~qvA 308 (310)
..+..+...+.+||++.|+|+.+|+
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~ 68 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVA 68 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3466677799999999999998874
No 422
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=20.72 E-value=1.1e+02 Score=23.48 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcC
Q 021629 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG 216 (310)
Q Consensus 176 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 216 (310)
..+.++.|.+|.++|+++-.=-..|+.+++.++++..+..+
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~ 120 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGH 120 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCC
Confidence 45679999999999999877666789999999988865543
No 423
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.71 E-value=3.6e+02 Score=19.98 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhCCCccceEEeecCCC-------CChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHH
Q 021629 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (310)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lH~pd~-------~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~ 209 (310)
..-.+++++.++.+|..-.++|+.-.+.. .+.+......-.+...|.++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 34556778888899999888888866533 234556666777888899988777778888877663
No 424
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.68 E-value=1.2e+02 Score=23.57 Aligned_cols=52 Identities=29% Similarity=0.277 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCC
Q 021629 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (310)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~ 136 (310)
|+......---+++.|.-|+-|-..|--|. |.++---|-..+ +++++.+|+.
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVa 69 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVA 69 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEE
Confidence 345555566667899999999999997763 666654454444 7899999983
No 425
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=20.67 E-value=2.2e+02 Score=26.77 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeeeccCcc------------ccCccccchhHHHHHcCceEEEcc
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLI------------YRKPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~------------~~~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
+.+.+++.++..++.++|++++.+...-. .+.+...++++..++.|+.++.+.
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 45666677666677777777765543211 123300258899999999887763
No 426
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=20.57 E-value=2.1e+02 Score=26.53 Aligned_cols=55 Identities=20% Similarity=0.374 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeeeccCcccc--------C----ccccchhHHHHHcCceEEEcc-cc
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------K----PEENGVKAACDELGITLIAYC-PI 255 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~--------~----~~~~~~l~~~~~~gi~v~a~~-pl 255 (310)
+.+.++++++..++.++|++++.+.+.-+.. . +.-.++++.++++|+.++.+. |.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 5666777777777777777777666321110 0 111268999999999988763 54
No 427
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=20.54 E-value=3.5e+02 Score=21.29 Aligned_cols=68 Identities=26% Similarity=0.145 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCccccchhHHHHHcCce
Q 021629 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (310)
Q Consensus 177 ~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~l~~~~~~gi~ 248 (310)
.++.+.|+.|+++| ++..=+||.+...+....+.. - ...|..+-..-... ..+....+...|++.|+.
T Consensus 67 ~g~~e~l~~L~~~g-~~~~i~T~~~~~~~~~~~~~~-l-~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~ 134 (154)
T TIGR01549 67 RGAADLLKRLKEAG-IKLGIISNGSLRAQKLLLRKH-L-GDYFDLILGSDEFG-AKPEPEIFLAALESLGLP 134 (154)
T ss_pred cCHHHHHHHHHHCc-CeEEEEeCCchHHHHHHHHHH-H-HhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCC
Confidence 45888888898887 455557777777666665542 1 11233332222333 333333577888888874
No 428
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.46 E-value=2e+02 Score=26.63 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeeeccCccc--------------c--CccccchhHHHHHcCceEEEcc
Q 021629 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIY--------------R--KPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~--------------~--~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
+.+++.++++..++.++|++++.+...-.. + -+.-.++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 566777777777777888887766532111 1 1111258999999999998863
No 429
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=20.45 E-value=2.7e+02 Score=25.08 Aligned_cols=22 Identities=5% Similarity=-0.096 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccc
Q 021629 286 LQPLLNRIKELGENYSKTSTQS 307 (310)
Q Consensus 286 ~~~~~~~l~~iA~~~g~s~~qv 307 (310)
....+.+.-.+|+++|+++.++
T Consensus 182 ~~~~~~Ea~~l~~~~Gi~~~~~ 203 (296)
T PRK11559 182 NIAAMSEALVLATKAGVNPDLV 203 (296)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH
Confidence 3445667788899999988654
No 430
>PRK14847 hypothetical protein; Provisional
Probab=20.31 E-value=5.8e+02 Score=24.06 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCc----ccEEEeecCCHHHHHHHHHHHHhcCCCeeeee
Q 021629 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (310)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 223 (310)
+-.|-+.|.++|+|.|.+ -+|.. .++-.+.+.++.+.++ ++-.+++....+.|+..++.....+.....+-
T Consensus 56 Kl~IA~~L~~lGVd~IEv---G~Pa~--s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~ 130 (333)
T PRK14847 56 KLRLFEQLVAVGLKEIEV---AFPSA--SQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHLY 130 (333)
T ss_pred HHHHHHHHHHcCCCEEEe---eCCCC--CHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEE
Confidence 445777799999876664 33421 2333666677777763 66777888788888888776543222222233
Q ss_pred eccCcccc------Cccc-----cchhHHHHHcCc---e---EEEcccccc
Q 021629 224 VNYSLIYR------KPEE-----NGVKAACDELGI---T---LIAYCPIAQ 257 (310)
Q Consensus 224 ~~~n~~~~------~~~~-----~~~l~~~~~~gi---~---v~a~~pl~~ 257 (310)
++-|.++. ..++ .+.+.++++++. + .+.++|-..
T Consensus 131 ~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDa 181 (333)
T PRK14847 131 NPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETF 181 (333)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecC
Confidence 33332222 1111 035678888955 2 367776653
No 431
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.30 E-value=5.7e+02 Score=24.26 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEeec-CCC--------CC-hHHHHH----HHHHHHHcCcccEEEeecCCH
Q 021629 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI--------WG-NEGFID----GLGDAVEQGLVKAVGVSNYSE 202 (310)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lH~-pd~--------~~-~~~~~~----~L~~L~~~G~ir~iGvS~~~~ 202 (310)
..+.+.+++.++..++ |+.|+|.+|.+-- |.. .+ .++.|+ +.+.|.+.|- ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 5788889888888665 9999999987753 321 11 223333 2345666675 4478888854
No 432
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.30 E-value=2.4e+02 Score=25.73 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeeeeeec--cCc-------------ccc----CccccchhHHHHHcCceEEEcc
Q 021629 200 YSEKRLRNAYEKLKKRGIPLASNQVN--YSL-------------IYR----KPEENGVKAACDELGITLIAYC 253 (310)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~--~n~-------------~~~----~~~~~~~l~~~~~~gi~v~a~~ 253 (310)
.+.+.+.++++..++.++|++++-+. |.- +.- -+.-.++++..++.|+.++.+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 46778888888888888998887664 221 110 1122269999999999998864
No 433
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.21 E-value=7.6e+02 Score=23.56 Aligned_cols=152 Identities=14% Similarity=0.001 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021629 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (310)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (310)
.++..+.+..+++.|++.|=.-- |...- ....+.+ +++++.-. +++-|..=.. ..++.+...+
T Consensus 161 ~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~---~~di~~v-~avRe~~G----~~~~l~vDaN---~~w~~~~A~~---- 223 (385)
T cd03326 161 LGRLRDEMRRYLDRGYTVVKIKI--GGAPL---DEDLRRI-EAALDVLG----DGARLAVDAN---GRFDLETAIA---- 223 (385)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC--CCCCH---HHHHHHH-HHHHHhcC----CCCeEEEECC---CCCCHHHHHH----
Confidence 35566667777899999875321 11000 0002233 34443321 2333333332 1345443222
Q ss_pred HHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCccc-EEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCccccC
Q 021629 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (310)
Q Consensus 154 sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (310)
.++.|. .+++.++..|-+. +-++.+.+|++...|- ..|=|.++...+..+++... ..-.++++|....-+---
T Consensus 224 ~~~~l~--~~~~~~iEeP~~~---~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a-~~~~~div~~d~~~~GGi 297 (385)
T cd03326 224 YAKALA--PYGLRWYEEPGDP---LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGG-MRPDRDVLQFDPGLSYGL 297 (385)
T ss_pred HHHHhh--CcCCCEEECCCCc---cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCC-ccccCCEEEeCchhhCCH
Confidence 333442 3467777777532 2366677777775544 66777788888888865410 000137777766543211
Q ss_pred ccccchhHHHHHcCce
Q 021629 233 PEENGVKAACDELGIT 248 (310)
Q Consensus 233 ~~~~~~l~~~~~~gi~ 248 (310)
.+-..+.+.|+.+||.
T Consensus 298 t~~~kia~lA~a~gi~ 313 (385)
T cd03326 298 PEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 1112478889999987
No 434
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=20.20 E-value=4.6e+02 Score=21.00 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccCCCCCCcEE-EEecCCCC---CCCCCHHHHHHHHHHHHHhhCC--CccceEEeecCCCCChHHHHHHH
Q 021629 110 ETLLGRFIKERKQRDPEVEVT-VATKFAAL---PWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGIWGNEGFIDGL 183 (310)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~-I~tK~~~~---~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lH~pd~~~~~~~~~~L 183 (310)
-+++-++|++-. |-++ ...|.|-= ..++..+.=.+-+++.|++||+ ++++.+++.--+.....++++.+
T Consensus 43 ~~fvl~Al~~Ga-----DGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~ef 117 (132)
T COG1908 43 PEFVLKALRKGA-----DGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEF 117 (132)
T ss_pred HHHHHHHHHcCC-----CeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHH
Confidence 445667776543 4444 44555531 1334556666778999999987 47787777765544444444443
No 435
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.19 E-value=2e+02 Score=27.70 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCeeeeeeccCccccCcccc----chhHHHHHcCceEE
Q 021629 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN----GVKAACDELGITLI 250 (310)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~----~~l~~~~~~gi~v~ 250 (310)
|++.+.++++++-....+++..+.-+-.|....++... ++.++|+++||.++
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv 223 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV 223 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence 34444444444433333355555555555554443221 35666666666664
No 436
>TIGR00035 asp_race aspartate racemase.
Probab=20.18 E-value=5e+02 Score=22.57 Aligned_cols=62 Identities=6% Similarity=-0.075 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEeecCCCCC-------------hHHHHHHHHHHHHcCcccEEEeecCCHHHH
Q 021629 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------NEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (310)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~-------------~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 205 (310)
+.+..++-++..-.+.+-++++++.+++|+..+ ...+.+.++.|.+.| +..|-+++.++..+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 455666666677677888999999999986411 234566666666655 79999988876654
No 437
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.18 E-value=2.9e+02 Score=25.21 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccCc
Q 021629 172 GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (310)
Q Consensus 172 d~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (310)
|...++.+.+.++.+.+.|+.-=||...|+.++++++.+.++.. +.+.-.+|++
T Consensus 75 DFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v---~vv~a~NfSi 128 (266)
T COG0289 75 DFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKV---PVVIAPNFSL 128 (266)
T ss_pred ECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhC---CEEEeccchH
Confidence 34567889999999999999999999999999999888877652 3344444443
No 438
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=20.11 E-value=5e+02 Score=21.84 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=37.3
Q ss_pred CccceEEeecCCCCChHHHHHHHHHH-HHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeeeeeccC
Q 021629 161 SSVELYQLHWAGIWGNEGFIDGLGDA-VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (310)
Q Consensus 161 d~iDl~~lH~pd~~~~~~~~~~L~~L-~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (310)
+.+|.++++... ....++++.+.++ +..|++- +.....+.+.++...+++.+....+.|+..+
T Consensus 110 ~~~D~V~~~~~~-~~~~~~l~~~~~~LkpgG~lv---~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 173 (198)
T PRK00377 110 EKFDRIFIGGGS-EKLKEIISASWEIIKKGGRIV---IDAILLETVNNALSALENIGFNLEITEVIIA 173 (198)
T ss_pred CCCCEEEECCCc-ccHHHHHHHHHHHcCCCcEEE---EEeecHHHHHHHHHHHHHcCCCeEEEEEehh
Confidence 357777775421 2345566655444 3445442 3444667778887777777776677766554
No 439
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=20.10 E-value=5.5e+02 Score=21.85 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEeecCCCCChHH
Q 021629 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEG 178 (310)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~ 178 (310)
++.+.+...++.+++-+|.+++..+.+|.....+.++
T Consensus 127 ~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~~~~~ 163 (184)
T PRK04930 127 YPMSDILRPFELTAAMCRMHWLSPIIIYWARRQSPEE 163 (184)
T ss_pred CCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCCCHHH
Confidence 4677788889999999999999999999876544443
No 440
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.06 E-value=6.1e+02 Score=22.34 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEeecCCCCChHHHHHHHHHHHHcCcccEEEeecCCHHHHHHHHHHHHhcCCCeeee
Q 021629 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (310)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lH~pd~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (310)
...+.+.+++.++.+|. ++++ +.......+...+.++.+...+ +..|-+...+.....+.++.+...++|+..+
T Consensus 14 ~~~~~~gi~~~a~~~g~---~~~~-~~~~~~~~~~~~~~l~~~~~~~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 14 SNAQVRGAKDEFAKLGI---EVVA-TTDAQFDPAKQVADIETTISQK-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHHHHHHHcCC---EEEE-ecCCCCCHHHHHHHHHHHHHhC-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEe
Confidence 45688888888888884 3332 2222234555667777777654 6666665544333344444455566765544
No 441
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=20.01 E-value=4.1e+02 Score=20.32 Aligned_cols=75 Identities=16% Similarity=0.041 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHHHHHCCCCe-EECCcCcCCCCCCCCCchHHHHHHHHhhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021629 70 DDRKMKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (310)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~-~DtA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (310)
++.+.++..+-|...+..|.+. ++-|+. .+. |....-..|+... ...++..+.
T Consensus 9 P~l~~~~i~~Qv~~ll~qG~~i~iE~ad~---------------------r~~----r~~~W~mW~~p~~-~~~~~~~Vl 62 (99)
T PF00101_consen 9 PPLTDEEIAKQVRYLLSQGWIIGIEHADP---------------------RRF----RTSYWQMWKLPMF-GCTDPAQVL 62 (99)
T ss_dssp S---HHHHHHHHHHHHHTT-EEEEEEESC---------------------GGS----TSSS-EEESSEBT-TBSSHHHHH
T ss_pred CCCCHHHHHHHHHhhhhcCceeeEEecCC---------------------CCC----CCCEeecCCCCCc-CCCCHHHHH
Confidence 4566788999999999999774 432211 111 4456666666543 357889999
Q ss_pred HHHHHHHHhhCCCccceEEeec
Q 021629 149 AALKDSLFRLGLSSVELYQLHW 170 (310)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lH~ 170 (310)
..|+..++...-+||-|+=+..
T Consensus 63 ~el~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 63 AELEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHHHHHHSTTSEEEEEEEET
T ss_pred HHHHHHHHhCCCceEEEEEEcC
Confidence 9999999999888887765554
Done!