Query 021631
Match_columns 310
No_of_seqs 214 out of 1434
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 1.4E-31 3E-36 233.4 13.8 145 86-234 4-169 (170)
2 COG0748 HugZ Putative heme iro 99.8 9.9E-22 2.2E-26 177.7 -1.6 211 91-310 8-225 (245)
3 PF10615 DUF2470: Protein of u 99.7 2.3E-18 5E-23 133.1 4.8 70 238-310 2-73 (83)
4 KOG3374 Cellular repressor of 99.7 8.8E-17 1.9E-21 137.5 11.2 147 85-235 41-207 (210)
5 PRK03467 hypothetical protein; 99.7 1.6E-15 3.4E-20 128.2 16.3 127 89-221 7-138 (144)
6 TIGR03668 Rv0121_F420 PPOX cla 99.5 4.7E-13 1E-17 113.4 15.2 121 90-213 3-138 (141)
7 TIGR03667 Rv3369 PPOX class pr 99.5 1.5E-12 3.2E-17 108.8 14.2 117 90-211 5-129 (130)
8 PF01243 Pyridox_oxidase: Pyri 99.4 3.2E-12 6.9E-17 98.1 12.9 86 90-179 3-89 (89)
9 TIGR03666 Rv2061_F420 PPOX cla 99.4 5.6E-12 1.2E-16 105.7 15.2 112 94-210 7-127 (132)
10 TIGR03618 Rv1155_F420 PPOX cla 99.3 5.8E-11 1.3E-15 96.2 14.1 107 103-213 1-116 (117)
11 PF12900 Pyridox_ox_2: Pyridox 99.1 1.6E-09 3.5E-14 91.4 14.5 119 89-213 2-140 (143)
12 COG3787 Uncharacterized protei 99.0 1.1E-08 2.4E-13 84.1 12.6 127 90-222 3-134 (145)
13 PRK05679 pyridoxamine 5'-phosp 98.9 3.9E-08 8.5E-13 87.7 15.6 77 96-178 24-101 (195)
14 COG3467 Predicted flavin-nucle 98.9 4.8E-08 1E-12 85.0 15.0 121 88-212 12-156 (166)
15 COG0748 HugZ Putative heme iro 98.7 1.2E-09 2.7E-14 99.4 -0.8 136 82-222 79-221 (245)
16 COG3871 Uncharacterized stress 98.5 9.5E-07 2E-11 74.5 10.0 117 90-216 8-130 (145)
17 TIGR00558 pdxH pyridoxamine-ph 98.5 6.3E-06 1.4E-10 74.8 15.9 76 97-178 47-123 (217)
18 COG0259 PdxH Pyridoxamine-phos 98.3 2.3E-05 5E-10 69.6 13.5 134 70-217 25-189 (214)
19 PRK06733 hypothetical protein; 98.2 4.9E-05 1.1E-09 65.1 14.3 108 90-220 11-120 (151)
20 PLN03049 pyridoxine (pyridoxam 98.2 5.5E-05 1.2E-09 75.9 15.7 77 96-178 286-363 (462)
21 COG5015 Uncharacterized conser 97.8 0.00093 2E-08 54.8 13.0 114 91-214 3-120 (132)
22 TIGR00026 hi_GC_TIGR00026 deaz 97.7 0.00072 1.6E-08 55.3 10.9 88 99-197 7-100 (113)
23 PLN02918 pyridoxine (pyridoxam 97.7 0.0012 2.6E-08 67.3 14.9 76 98-179 370-446 (544)
24 PF04075 DUF385: Domain of unk 97.1 0.0057 1.2E-07 51.3 10.0 100 99-209 25-132 (132)
25 KOG2586 Pyridoxamine-phosphate 97.1 0.0041 8.8E-08 55.4 9.2 78 97-179 54-132 (228)
26 PF04299 FMN_bind_2: Putative 96.6 0.043 9.4E-07 48.0 12.4 101 88-191 11-134 (169)
27 PF12766 Pyridox_oxase_2: Pyri 96.4 0.048 1E-06 43.6 10.1 73 98-175 19-99 (100)
28 COG2808 PaiB Transcriptional r 93.1 1.8 4E-05 38.8 11.5 101 88-191 11-134 (209)
29 COG3576 Predicted flavin-nucle 89.4 1.1 2.5E-05 39.3 6.4 117 91-216 33-153 (173)
30 PF04289 DUF447: Protein of un 82.5 3.3 7.2E-05 36.3 5.8 53 102-158 3-55 (177)
31 PF08922 DUF1905: Domain of un 39.6 1.4E+02 0.003 22.5 6.4 58 91-154 21-80 (80)
32 PF10012 DUF2255: Uncharacteri 30.9 3E+02 0.0065 22.6 9.8 89 96-196 6-99 (116)
33 COG2457 Uncharacterized conser 24.8 1.9E+02 0.004 26.1 5.5 52 102-158 18-69 (199)
34 PF01613 Flavin_Reduct: Flavin 23.1 1.4E+02 0.0031 24.6 4.4 53 101-156 8-63 (154)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.97 E-value=1.4e-31 Score=233.41 Aligned_cols=145 Identities=44% Similarity=0.702 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHhcCCeEEEEeecC--CCCCceeEEEeeEE----EcCCCCEEEEecCCchHhhhhhcCCceEEEEeeC--
Q 021631 86 LPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARD-- 157 (310)
Q Consensus 86 ~s~ae~aRtlL~~~~~~~LaTv~~--~~dG~P~~S~V~ya----~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~d-- 157 (310)
...|+.||+||+..++|+|+|++. +.+|+|+++++.|+ .+.+|.|||+++.++.|++||++||||||+|...
T Consensus 4 ~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~ 83 (170)
T PF13883_consen 4 EEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQG 83 (170)
T ss_dssp T-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGS
T ss_pred HHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCC
Confidence 445789999999999999999987 57899999999999 8889999999999999999999999999999863
Q ss_pred ---------CCCCcceEEEEEEEEEEeChhHHHHHHHHHHHhCCCC-ccccc---CCeeEEEEEeeEEEEEecccccccC
Q 021631 158 ---------PEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALLG 224 (310)
Q Consensus 158 ---------p~~~~~~Rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a-~~~~~---~df~~~rL~p~~v~~v~GfG~a~~~ 224 (310)
|.+++++||||.|++++|++++.+.++++|+++||++ .|.++ +||.||||+|++|+||||||++
T Consensus 84 ~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~--- 160 (170)
T PF13883_consen 84 GDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA--- 160 (170)
T ss_dssp SHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS----
T ss_pred CcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc---
Confidence 2334689999999999999888888999999999999 89999 9999999999999999999997
Q ss_pred CCCCCHHHHh
Q 021631 225 SGEFSKEEYQ 234 (310)
Q Consensus 225 ~~~v~~~dy~ 234 (310)
+||+++||.
T Consensus 161 -~~i~~~~Y~ 169 (170)
T PF13883_consen 161 -AWISAEEYY 169 (170)
T ss_dssp -EEE-HHHHH
T ss_pred -eEeCHHHhc
Confidence 589999996
No 2
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.9e-22 Score=177.75 Aligned_cols=211 Identities=23% Similarity=0.232 Sum_probs=172.8
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCC-C-CcceEEEE
Q 021631 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPE-D-RTDLVITL 168 (310)
Q Consensus 91 ~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~-~-~~~~Rvtl 168 (310)
-+|.++....++.|+|..+. +|.|++|.+++..|-+|+|.++++.++.|++ +..|+|||+++..... + ...+|+++
T Consensus 8 na~~~l~~~~~~~l~~~~~~-~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~~~Rl~~ 85 (245)
T COG0748 8 NARHLLRSARLAALAGLEPV-TGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELALPRLTL 85 (245)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhhccchhH
Confidence 37999999999999999986 9999999999999999999999999999999 9999999999876432 2 46789999
Q ss_pred EEEEEEeChhH--HHHHHHHHHHhCCCC-cccccCCeeEEEEEeeEEEEEecccccccCCCCCCHHHHhhcCCCcc-ccc
Q 021631 169 HGDATSVAEKD--KAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPI-AQF 244 (310)
Q Consensus 169 ~G~a~~v~~~e--~~~l~~~y~~rhP~a-~~~~~~df~~~rL~p~~v~~v~GfG~a~~~~~~v~~~dy~~A~pDpl-~~~ 244 (310)
.+.+..++.+. ...+...|..++|.+ .|.+.+||.+|+.++.+.....|++.- + ..+-.+|. ..+. ...
T Consensus 86 e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p~-v--s~m~iede----a~a~s~~~ 158 (245)
T COG0748 86 EIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNPK-V--SVMFIEDE----AKAKSAFA 158 (245)
T ss_pred HHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHHHhhccCcCCc-h--hhheecCc----hhhhhHHH
Confidence 99999988653 456777788888888 788889999999999998888888761 0 11222222 2333 344
Q ss_pred cchhhhhhhccCHHHHHHHHHHhCCCC-CCcEEEEeecCCCcEEEEeecCCcEEEEecCCCCCCCCC
Q 021631 245 SKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK 310 (310)
Q Consensus 245 ~~~il~HMN~dH~d~l~~~~~~~~~~~-~~~a~m~~vD~~G~dlr~~~~~~~~~~Ri~F~~pv~d~~ 310 (310)
+.+++.|||+||.+++..+++.+.... ....+|.+||+.|+++.+...++...+|++|.+++.+.+
T Consensus 159 r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~ 225 (245)
T COG0748 159 RKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISG 225 (245)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhhcccc
Confidence 678999999999999999999998775 444559999999999999765666799999999987653
No 3
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.73 E-value=2.3e-18 Score=133.13 Aligned_cols=70 Identities=39% Similarity=0.675 Sum_probs=56.0
Q ss_pred CCcccc-ccchhhhhhhccCHHHHHHHHHHhCCCC-CCcEEEEeecCCCcEEEEeecCCcEEEEecCCCCCCCCC
Q 021631 238 VDPIAQ-FSKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK 310 (310)
Q Consensus 238 pDpl~~-~~~~il~HMN~dH~d~l~~~~~~~~~~~-~~~a~m~~vD~~G~dlr~~~~~~~~~~Ri~F~~pv~d~~ 310 (310)
+||+.. .+++||+|||+||.|++.+||++|++.+ +.+|+|++||++||+|++ ++...+||||++|+++++
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~ 73 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPE 73 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHC
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHH
Confidence 799995 8999999999999999999999999985 789999999999999999 456899999999999854
No 4
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.70 E-value=8.8e-17 Score=137.54 Aligned_cols=147 Identities=21% Similarity=0.336 Sum_probs=126.3
Q ss_pred CCCCHHHHHHHHhcCCeEEEEeecCCC--CCceeEEEeeEEEc----CCCCEEEEecCCchHhhhhhcCCceEEEEee--
Q 021631 85 RLPPLEEIRTVLDRSVRGMLSTFSQKY--EGYPSGSMVDFACD----ADGTPILAVSSLAVHTKDLLANPKCSLLVAR-- 156 (310)
Q Consensus 85 r~s~ae~aRtlL~~~~~~~LaTv~~~~--dG~P~~S~V~ya~d----~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~-- 156 (310)
|.-.|..||-+++++++|.|+|++.++ .|+|++.++.+.-. +.|.|||+++++....+|+..|++++|++.+
T Consensus 41 r~d~A~iAR~lvh~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~q 120 (210)
T KOG3374|consen 41 RLDHAKIARDLVHRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQ 120 (210)
T ss_pred hhhHHHHHHHHhhhcccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEeeccc
Confidence 444566799999999999999998754 79999999877622 3589999999999999999999999999975
Q ss_pred ---------CCCCCcceEEEEEEEEEEeChh--HHHHHHHHHHHhCCCC-cccccCCeeEEEEEeeEEEEEecccccccC
Q 021631 157 ---------DPEDRTDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLG 224 (310)
Q Consensus 157 ---------dp~~~~~~Rvtl~G~a~~v~~~--e~~~l~~~y~~rhP~a-~~~~~~df~~~rL~p~~v~~v~GfG~a~~~ 224 (310)
||..+.+.+++|+|++..+++. +.+.....|..|||+. .|...|+|.|.+|++..|...+-||..
T Consensus 121 t~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~w~~~hn~~~~~l~isni~vld~~ggp--- 197 (210)
T KOG3374|consen 121 TLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMINWVKAHNFYLCELEISNIFVLDFYGGP--- 197 (210)
T ss_pred cchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcCCccccceEEEEEeeeeEEEEEecCCC---
Confidence 3445678899999999999864 4556678999999999 999999999999999999999988865
Q ss_pred CCCCCHHHHhh
Q 021631 225 SGEFSKEEYQA 235 (310)
Q Consensus 225 ~~~v~~~dy~~ 235 (310)
+-|+++||-+
T Consensus 198 -~~vs~~~yy~ 207 (210)
T KOG3374|consen 198 -HKVSASDYYA 207 (210)
T ss_pred -cccCHHHhcc
Confidence 5799999954
No 5
>PRK03467 hypothetical protein; Provisional
Probab=99.68 E-value=1.6e-15 Score=128.21 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCC-EEEEecCCchHhhhhhcCCceEEEEeeCCCCC-cceEE
Q 021631 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGT-PILAVSSLAVHTKDLLANPKCSLLVARDPEDR-TDLVI 166 (310)
Q Consensus 89 ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~-~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~-~~~Rv 166 (310)
.+.+..+|++.+..+|||.+ ++.||+..+.|++|+++. +||..+..++|.+|+.+||+|+.+|..++.+. .-..|
T Consensus 7 ~~~I~~fl~~~hvltLa~~~---~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~Gv 83 (144)
T PRK03467 7 LTAISRWLAKQHVVTLCVGQ---EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRGV 83 (144)
T ss_pred HHHHHHHHHhCcEEEEEEEc---CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceEE
Confidence 35799999999999999997 578998899999998765 45555666899999999999999999887653 34599
Q ss_pred EEEEEEEEeChhHHHHHHHHHHHhCCCCcccccCCeeEEEEEeeEEEEEe---ccccc
Q 021631 167 TLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATA 221 (310)
Q Consensus 167 tl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~df~~~rL~p~~v~~v~---GfG~a 221 (310)
++.|.+..+++++...++++|.+|||-+... ...+|+|++.++.|++ |||+.
T Consensus 84 Q~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~~---~~~iw~l~l~~iK~tdN~LGFgkK 138 (144)
T PRK03467 84 QFKGEIRRLEGEESDAARKRYNRRFPVARAL---SAPVWELRLDEIKMTDNTLGFGKK 138 (144)
T ss_pred EEEEEEEecChhHHHHHHHHHHHhCcchhcc---CCceEEEEEEEEEEeccccccccc
Confidence 9999999999887788999999999998443 3569999999999999 99984
No 6
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.52 E-value=4.7e-13 Score=113.43 Aligned_cols=121 Identities=25% Similarity=0.191 Sum_probs=89.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEc------CCCCEEEEe------cCCchHhhhhhcCCceEEEEeeC
Q 021631 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACD------ADGTPILAV------SSLAVHTKDLLANPKCSLLVARD 157 (310)
Q Consensus 90 e~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d------~dG~~~l~v------s~~s~h~rNL~~dprvSl~V~~d 157 (310)
++++++|++...++|+|+++ ||.|++++++|+++ +++.+|+.+ ...+.|.+||++||||+|+|...
T Consensus 3 ~e~~~~L~~~~~~~LaTv~~--dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~ 80 (141)
T TIGR03668 3 FEARTRFAQARVARLATVSP--DGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRY 80 (141)
T ss_pred HHHHHHHccCCEEEEEEECC--CCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecC
Confidence 57899999999999999998 99999999999998 367666653 34468999999999999998642
Q ss_pred CCCC-cceEEEEEEEEEEeChh--HHHHHHHHHHHhCCCCcccccCCeeEEEEEeeEEE
Q 021631 158 PEDR-TDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVR 213 (310)
Q Consensus 158 p~~~-~~~Rvtl~G~a~~v~~~--e~~~l~~~y~~rhP~a~~~~~~df~~~rL~p~~v~ 213 (310)
.... ....+++.|+++.++++ +.+.+.+.+.++|+...... .+..+++|+|+++.
T Consensus 81 ~~~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~~~~-~~~~vi~i~~~r~~ 138 (141)
T TIGR03668 81 DDDWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQAVP-LEGPVIAIRVERWA 138 (141)
T ss_pred CCCccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhhhcC-CCCcEEEEEEEEEe
Confidence 2221 12469999999998754 44555566666665421111 23778999998763
No 7
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.47 E-value=1.5e-12 Score=108.75 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEE
Q 021631 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLH 169 (310)
Q Consensus 90 e~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~ 169 (310)
++++.+|+..+.+.|+|+++ +|.|++.+|+|..+ +|.++|+....+.|.+||.+||+|+|++..++.. ...+.+.
T Consensus 5 ~~~~~~L~~~~~~~LaT~~~--dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~--~~~v~v~ 79 (130)
T TIGR03667 5 AKVARRLREESIVWLTTVRR--SGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRG--GDVVVFT 79 (130)
T ss_pred HHHHHHhcCCCeEEEEEECC--CCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCC--ceEEEEE
Confidence 68899999999999999988 99999999999987 7888888888889999999999999999764322 2468999
Q ss_pred EEEEEeChhHHHHHHHHHHHhCCCC--cc-c-----ccCCeeEEEEEeeE
Q 021631 170 GDATSVAEKDKAAIRAVYLAKHPNA--FW-V-----DFGDFQFMRIEPKA 211 (310)
Q Consensus 170 G~a~~v~~~e~~~l~~~y~~rhP~a--~~-~-----~~~df~~~rL~p~~ 211 (310)
|+++.+++.+..+....|.++|++. .+ . ..+...++||+|++
T Consensus 80 G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T TIGR03667 80 GTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVTPER 129 (130)
T ss_pred EEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEeccc
Confidence 9999998654434445566666653 11 1 22345699999975
No 8
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.43 E-value=3.2e-12 Score=98.13 Aligned_cols=86 Identities=30% Similarity=0.414 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCC-CEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEE
Q 021631 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (310)
Q Consensus 90 e~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG-~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl 168 (310)
++++++|++.+.++|+|++. +|.|++++++|..+.++ .++|.....+.|++||++||+|+|++.... .....+++
T Consensus 3 ~~~~~~l~~~~~~~laTv~~--dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~--~~~~~v~~ 78 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVDE--DGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE--GTRRGVRV 78 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEET--TSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT--TTTEEEEE
T ss_pred HHHHHHhcCCCEEEEEEECC--CCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC--cCceEEEE
Confidence 67899999999999999998 99999999999987554 588888899999999999999999999854 23679999
Q ss_pred EEEEEEeChhH
Q 021631 169 HGDATSVAEKD 179 (310)
Q Consensus 169 ~G~a~~v~~~e 179 (310)
.|+|+.++++|
T Consensus 79 ~G~a~~~~d~E 89 (89)
T PF01243_consen 79 SGTAEILTDEE 89 (89)
T ss_dssp EEEEEEESHHH
T ss_pred EEEEEEEcCCC
Confidence 99999998764
No 9
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.43 E-value=5.6e-12 Score=105.71 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=90.9
Q ss_pred HHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEE
Q 021631 94 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (310)
Q Consensus 94 tlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~ 173 (310)
..|++++.++|+|+.. +|.|++++++|+.+ +|.+||+.+..++|.+||++||+|+|++.+.... ...+.+.|+++
T Consensus 7 ~~L~~~~~~~LaT~~~--dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~--~~~v~v~G~A~ 81 (132)
T TIGR03666 7 ADLARARYALLTTFRK--DGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGR--PTGPVVPGRAR 81 (132)
T ss_pred HHhccCcEEEEEEECC--CCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCC--EeEEEEEEEEE
Confidence 5688999999999988 99999999999997 6889998888899999999999999998753221 34699999999
Q ss_pred EeChhHHHHHHHHHHHhCCCC--cc-----c--ccCCeeEEEEEee
Q 021631 174 SVAEKDKAAIRAVYLAKHPNA--FW-----V--DFGDFQFMRIEPK 210 (310)
Q Consensus 174 ~v~~~e~~~l~~~y~~rhP~a--~~-----~--~~~df~~~rL~p~ 210 (310)
.+++++...+.+++.++|+.. .| . ..+.+..+||.|+
T Consensus 82 ~v~~~e~~~~~~~l~~kY~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 127 (132)
T TIGR03666 82 ILDGAETARARDLLARRYGLQGRLFPLFSKLRRGRDRNVGLELTPA 127 (132)
T ss_pred EEcchhHHHHHHHHHHHcCChhhhhhhHHHhhccCCCceEEEEEec
Confidence 998777777888888888775 22 1 2234566777774
No 10
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.32 E-value=5.8e-11 Score=96.16 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=81.8
Q ss_pred EEEeecCCCCCceeEEEeeEEEcC-CCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEeCh-hHH
Q 021631 103 MLSTFSQKYEGYPSGSMVDFACDA-DGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAE-KDK 180 (310)
Q Consensus 103 ~LaTv~~~~dG~P~~S~V~ya~d~-dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~~v~~-~e~ 180 (310)
+|+|++. +|.|++++++|+.+. ++.++|+.+..++|.+||.+||+|+|++...... ..++++.|+++.+++ ++.
T Consensus 1 ~LaTv~~--~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~--~~~v~i~G~a~~v~d~~~~ 76 (117)
T TIGR03618 1 VLATIRA--DGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFP--YRYVEVEGTAELVEDPDPV 76 (117)
T ss_pred CEEEECC--CCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCC--ccEEEEEEEEEEecCCccc
Confidence 5899987 899999999999853 4558888888899999999999999999874322 258999999999976 344
Q ss_pred HHHHHHHHHhCCCC----ccc---ccCCeeEEEEEeeEEE
Q 021631 181 AAIRAVYLAKHPNA----FWV---DFGDFQFMRIEPKAVR 213 (310)
Q Consensus 181 ~~l~~~y~~rhP~a----~~~---~~~df~~~rL~p~~v~ 213 (310)
+.+.+++.++|... .|. +.++..+++|+|++++
T Consensus 77 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~p~~~~ 116 (117)
T TIGR03618 77 RDLVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVTPTRVY 116 (117)
T ss_pred HHHHHHHHHHHcccccchhcccccCCCCEEEEEEEEEEec
Confidence 55666666666332 122 2356789999999874
No 11
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=99.14 E-value=1.6e-09 Score=91.38 Aligned_cols=119 Identities=26% Similarity=0.355 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeC------CC---
Q 021631 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARD------PE--- 159 (310)
Q Consensus 89 ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~d------p~--- 159 (310)
.+++.++|++..+|+||+++ +|.|++.+++|+++ +|.+||+.+..+.+.+++.++| +++++... +.
T Consensus 2 ~~e~~~iL~~~~~g~la~~~---~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~ 76 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD---DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACS 76 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE---TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGG
T ss_pred HHHHHHHHhhCCEEEEEEEe---CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCc
Confidence 36899999999999999997 68999999999998 6889999888899999999888 99988752 11
Q ss_pred -CCcceEEEEEEEEEEeC-hhHHHHHHHHHHHhC-CCCccc--------ccCCeeEEEEEeeEEE
Q 021631 160 -DRTDLVITLHGDATSVA-EKDKAAIRAVYLAKH-PNAFWV--------DFGDFQFMRIEPKAVR 213 (310)
Q Consensus 160 -~~~~~Rvtl~G~a~~v~-~~e~~~l~~~y~~rh-P~a~~~--------~~~df~~~rL~p~~v~ 213 (310)
......|.+.|+++.|+ ++++.++...+.+++ |.. |. ......+|||+|+++.
T Consensus 77 ~~~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~-~~~~~~~~~~~~~~~~v~ri~i~~~s 140 (143)
T PF12900_consen 77 FSMNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGR-WDEIRPFADKELKRTAVYRIDIEELS 140 (143)
T ss_dssp EEEEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTT-CCCSC---HHHHHTEEEEEEEEEEEE
T ss_pred CcceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCC-cccccccchhhhcCeEEEEEEeEEEE
Confidence 11356899999999995 456677777777766 432 21 1234789999999864
No 12
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=1.1e-08 Score=84.06 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecC-CchHhhhhhcCCceEEEEeeCCCC-CcceEEE
Q 021631 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-LAVHTKDLLANPKCSLLVARDPED-RTDLVIT 167 (310)
Q Consensus 90 e~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~-~s~h~rNL~~dprvSl~V~~dp~~-~~~~Rvt 167 (310)
+++-.+|..+...+++... +|.||+....|++|+...-+|+++. ..+|.+-+..|++|..+|...+.- ..-..|+
T Consensus 3 ~rI~~flkkq~v~Tw~~~~---e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQ 79 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ---EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQ 79 (145)
T ss_pred hHHHHHHHhhheeeeeeec---CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeee
Confidence 4678899999999999876 6999999999999976655555554 478999999999999999875532 2346999
Q ss_pred EEEEEEEeChhHHHHHHHHHHHhCCCCcccccCCeeEEEEEeeEEEEEe---cccccc
Q 021631 168 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATAL 222 (310)
Q Consensus 168 l~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~df~~~rL~p~~v~~v~---GfG~a~ 222 (310)
+.|+...+.+++.+.++.+|.++||.+.... -.+|.|+++.|.+++ |||+..
T Consensus 80 fkge~~~l~~~q~~~Ark~Y~~rfp~akvd~---a~vwqleL~~ikftdNaLG~~kkl 134 (145)
T COG3787 80 FKGEISRLSGEQSDAARKAYNRRFPVAKVDS---APVWQLELDEIKFTDNALGFGKKL 134 (145)
T ss_pred eeeeehhhhcchHHHHHHHHhccCchhhccc---CceEEeeeeeEEeecccccccceE
Confidence 9999999999888899999999999984433 568999999999987 999853
No 13
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=98.94 E-value=3.9e-08 Score=87.67 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=65.0
Q ss_pred HhcCCeEEEEeecCCCCCceeEEEeeE-EEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 021631 96 LDRSVRGMLSTFSQKYEGYPSGSMVDF-ACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (310)
Q Consensus 96 L~~~~~~~LaTv~~~~dG~P~~S~V~y-a~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~~ 174 (310)
+...+.++|||++. +|.|.+..|.+ .++++| ++|++...++|+++|.+||+|+|++.... ....|.|.|.++.
T Consensus 24 ~~~~~~~~lATv~~--dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~---~~~qvrv~G~a~~ 97 (195)
T PRK05679 24 LNDPNAMTLATVDE--DGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKS---LERQVRVEGRVEK 97 (195)
T ss_pred CCCCceEEEEeeCC--CCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCC---CCEEEEEEEEEEE
Confidence 45667899999988 99999999987 477766 88888888999999999999999998632 2458899999999
Q ss_pred eChh
Q 021631 175 VAEK 178 (310)
Q Consensus 175 v~~~ 178 (310)
++++
T Consensus 98 ~~~~ 101 (195)
T PRK05679 98 VSAE 101 (195)
T ss_pred eCHH
Confidence 8865
No 14
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=98.92 E-value=4.8e-08 Score=85.05 Aligned_cols=121 Identities=23% Similarity=0.266 Sum_probs=90.5
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCC---------
Q 021631 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--------- 158 (310)
Q Consensus 88 ~ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp--------- 158 (310)
..+++..+|+.+.++.||+.+ +|.||+.++.|+.. +|.+|++.+..++|...|..+|.|++.+.+..
T Consensus 12 ~~~~i~~~l~~~~~~~La~~~---~~~PyivP~~y~~~-~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~ 87 (166)
T COG3467 12 SDEEIDAILAAGRVGRLAFAG---DGQPYVVPLNYGYE-GGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFN 87 (166)
T ss_pred CHHHHHHHHhhCCEEEEEEcC---CCCcEEEEeEeEEe-CCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceeccccc
Confidence 357899999999999999987 57899999999997 46788888888999999999999999998643
Q ss_pred CCCcceEEEEEEEEEEeChh-HHHHHH----HHHHHhCCCC--c----cc----ccCCeeEEEEEeeEE
Q 021631 159 EDRTDLVITLHGDATSVAEK-DKAAIR----AVYLAKHPNA--F----WV----DFGDFQFMRIEPKAV 212 (310)
Q Consensus 159 ~~~~~~Rvtl~G~a~~v~~~-e~~~l~----~~y~~rhP~a--~----~~----~~~df~~~rL~p~~v 212 (310)
.+.....|.++|+++++++. ++..+. ..+...+++. . .. ......+|++.++.+
T Consensus 88 ~s~~y~SVvv~G~~~~l~~~~~k~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (166)
T COG3467 88 SSRNYRSVVVFGRAEELSDLEEKAAALDHAWSLLMKGRPNWWEPGGRKEVPETVDSSPHSFFRIKIDEI 156 (166)
T ss_pred CCcceEEEEEEeEEEEcCChHHHHHHHHHHHHHhcccCcCcCCCCCccccccccccccceEEEEEccee
Confidence 23567799999999999864 444444 4444434443 1 11 222356677776543
No 15
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.2e-09 Score=99.38 Aligned_cols=136 Identities=24% Similarity=0.294 Sum_probs=105.2
Q ss_pred hhcCCCCHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCC-
Q 021631 82 AAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPED- 160 (310)
Q Consensus 82 ~a~r~s~ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~- 160 (310)
...|+++ +++.+.....+..|+|+.. +|.|-+|..++.++ ++..||+.|..++|++|+..+|.+|+++.+|+..
T Consensus 79 ~~~Rl~~--e~~afr~~~~sv~lat~~~--~g~~~~syAp~~~~-~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~a 153 (245)
T COG0748 79 ALPRLTL--EIEAFRLEFDSVALATLRE--RGLPRASYAPLYVD-DGDYYIYISEIARHARNLGFNPKVSVMFIEDEAKA 153 (245)
T ss_pred hccchhH--HHHHHHhccchHHHhhhhh--cCCcCCCcCceEec-CCceEEEEehHHHHhhccCcCCchhhheecCchhh
Confidence 3456764 7899999999999999987 99999999999997 5668999999999999999999999999887643
Q ss_pred ---CcceEEEEEEEEEEeCh-hHHHHHHHHHHHhCCCC--cccccCCeeEEEEEeeEEEEEecccccc
Q 021631 161 ---RTDLVITLHGDATSVAE-KDKAAIRAVYLAKHPNA--FWVDFGDFQFMRIEPKAVRYVSGVATAL 222 (310)
Q Consensus 161 ---~~~~Rvtl~G~a~~v~~-~e~~~l~~~y~~rhP~a--~~~~~~df~~~rL~p~~v~~v~GfG~a~ 222 (310)
-.+.|++..-.+..++- +.+..+...+.+++.+. .....++|.++.+++.+..++.|||++|
T Consensus 154 ~s~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~ 221 (245)
T COG0748 154 KSAFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAY 221 (245)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhh
Confidence 13345555555544442 23334444445555552 4456789999999999999999999987
No 16
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.50 E-value=9.5e-07 Score=74.46 Aligned_cols=117 Identities=21% Similarity=0.392 Sum_probs=90.2
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCC-CCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEE
Q 021631 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (310)
Q Consensus 90 e~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~d-G~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl 168 (310)
.....+++..+.+.|+|+.. +|.|+.-++.|--|+. |.+|+..+..++++..|+.||+|++++..+.. ..-|.+
T Consensus 8 ~~~~~~~e~~kv~~l~tv~~--~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~---~~fv~v 82 (145)
T COG3871 8 QALAELLEGSKVGMLATVQE--NGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH---DAFVEV 82 (145)
T ss_pred HHHHHHHhhCceEEEEEecC--CCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---cceEEE
Confidence 35678899999999999987 8899998887544432 88999889999999999999999999987533 468999
Q ss_pred EEEEEEeChhHH-----HHHHHHHHHhCCCCcccccCCeeEEEEEeeEEEEEe
Q 021631 169 HGDATSVAEKDK-----AAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (310)
Q Consensus 169 ~G~a~~v~~~e~-----~~l~~~y~~rhP~a~~~~~~df~~~rL~p~~v~~v~ 216 (310)
.|+++.+++... ....+.| ||.. .+.++..+++|+++++.|-.
T Consensus 83 ~Gtael~~dra~~d~~W~~~~~~w---Fe~G--kedP~l~~Lkv~~e~i~yw~ 130 (145)
T COG3871 83 SGTAELVEDRAKIDELWTSVLEAW---FEQG--KEDPDLTMLKVTAEDIDYWN 130 (145)
T ss_pred EEEEEeeccHHHHHHhhhhhHHHH---HhcC--CCCCCeEEEEEchhHhHHHh
Confidence 999999986421 1122222 2221 34578999999999998754
No 17
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.49 E-value=6.3e-06 Score=74.79 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=62.8
Q ss_pred hcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 021631 97 DRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (310)
Q Consensus 97 ~~~~~~~LaTv~~~~dG~P~~S~V~ya-~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~~v 175 (310)
...+..+|+|++. +|.|.+-+|.+- +++ +.++|++...+.|.++|.+||+|+|++..... ...|.|.|+++.+
T Consensus 47 ~~~~~~~LaTvd~--~G~P~~R~v~lr~~~~-~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~~---~~qvrv~G~a~~~ 120 (217)
T TIGR00558 47 TEPNAMTLSTVDE--SGRPSSRMVLLKELDE-RGFVFYTNYGSRKGHQIETNPNAALVFFWPDL---ERQVRVEGKVEKL 120 (217)
T ss_pred CCCceEEEEEECC--CCCEEEEEEEEEEECC-CcEEEEECCCChHHHHHHhCCcEEEEEEeCCC---CEEEEEEEEEEEC
Confidence 4566789999987 899999877774 454 45889899999999999999999999987432 5689999999998
Q ss_pred Chh
Q 021631 176 AEK 178 (310)
Q Consensus 176 ~~~ 178 (310)
+++
T Consensus 121 ~~~ 123 (217)
T TIGR00558 121 PRE 123 (217)
T ss_pred CHH
Confidence 765
No 18
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=98.27 E-value=2.3e-05 Score=69.61 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=96.4
Q ss_pred hhHHHhhHHhHHhhcCCCCHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCCchHhhhhhcCC
Q 021631 70 ANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANP 148 (310)
Q Consensus 70 ~~~~~~~~~~~~~a~r~s~ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya-~d~dG~~~l~vs~~s~h~rNL~~dp 148 (310)
++=|.+|+.--++|.+- =+..-+-.+|||++. +|.|.+-+|-.- +|+.| ++|++.-.|+|.+.|.+||
T Consensus 25 ~~P~~lF~~Wl~eA~~~--------~~~ePnAm~lATvd~--~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np 93 (214)
T COG0259 25 ANPLTLFRRWLEEAIRA--------EVNEPNAMTLATVDE--QGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANP 93 (214)
T ss_pred cCHHHHHHHHHHHHHhc--------ccCCCceeEEEeecC--CCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCc
Confidence 34567777776666442 267778899999998 999998777554 56666 5788998999999999999
Q ss_pred ceEEEEeeCCCCCcceEEEEEEEEEEeChhHHH------------------------------HHHHHHHHhCCCCcccc
Q 021631 149 KCSLLVARDPEDRTDLVITLHGDATSVAEKDKA------------------------------AIRAVYLAKHPNAFWVD 198 (310)
Q Consensus 149 rvSl~V~~dp~~~~~~Rvtl~G~a~~v~~~e~~------------------------------~l~~~y~~rhP~a~~~~ 198 (310)
++++++.-.+. ...|.+.|.++.|++++.+ ...+.|.++|+.....-
T Consensus 94 ~Aal~F~W~~L---~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~ 170 (214)
T COG0259 94 YAALLFPWKEL---ERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPR 170 (214)
T ss_pred ceeEEecchhc---cceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999986543 3478899999999865321 23344455666553211
Q ss_pred cCCeeEEEEEeeEEEEEec
Q 021631 199 FGDFQFMRIEPKAVRYVSG 217 (310)
Q Consensus 199 ~~df~~~rL~p~~v~~v~G 217 (310)
.+-+.-|||.|+.|.|=.|
T Consensus 171 P~~WgG~ri~p~~iEFWqg 189 (214)
T COG0259 171 PPHWGGFRIVPESIEFWQG 189 (214)
T ss_pred CCCccceEeeeeEEEEecC
Confidence 2335679999999987554
No 19
>PRK06733 hypothetical protein; Provisional
Probab=98.23 E-value=4.9e-05 Score=65.07 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEE--EcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEE
Q 021631 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA--CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVIT 167 (310)
Q Consensus 90 e~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya--~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvt 167 (310)
++...+|+......|+|++. .+|.|+.+++.++ .| +..+.|.....+...+||++||+++|.+..+. ...+
T Consensus 11 ~el~~~L~~~~~~~laTv~k-edG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~-----~~yq 83 (151)
T PRK06733 11 EDLVQLLRKERIVTLATTDF-EKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANE-----SVYS 83 (151)
T ss_pred HHHHHHHcCCceEEEEEEcc-CCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCC-----cEEE
Confidence 57899999999999999983 2899999998754 55 57888888899999999999999999998742 2489
Q ss_pred EEEEEEEeChhHHHHHHHHHHHhCCCCcccccCCeeEEEEEeeEEEEEecccc
Q 021631 168 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVAT 220 (310)
Q Consensus 168 l~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~df~~~rL~p~~v~~v~GfG~ 220 (310)
+.|.++.+.+.- +..| -...++.+++++|+=+-=.|.
T Consensus 84 IkG~a~i~~e~i---------e~vp-------lk~s~vei~I~eVrdv~FyGa 120 (151)
T PRK06733 84 ISGAAEILTDRM---------EGVP-------LKLALIEVNVEEVRDVMFYGA 120 (151)
T ss_pred EEEEEEEEeeec---------cccc-------ceEEEEEEEEEEEEEeeeccc
Confidence 999999886430 0001 137889999999884443343
No 20
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=98.18 E-value=5.5e-05 Score=75.87 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=63.7
Q ss_pred HhcCCeEEEEeecCCCCCceeEEEeeE-EEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 021631 96 LDRSVRGMLSTFSQKYEGYPSGSMVDF-ACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (310)
Q Consensus 96 L~~~~~~~LaTv~~~~dG~P~~S~V~y-a~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~~ 174 (310)
+...+..+|||++. +|.|.+-.|-+ .+|++|. +|++...|+|.++|.+||+++|++...+. ...|.+.|.++.
T Consensus 286 ~~ep~am~LATvd~--~G~P~~R~VlLk~~d~~g~-~F~Tn~~S~K~~eL~~Np~aal~F~w~~~---~rQvRv~G~a~~ 359 (462)
T PLN03049 286 LREPNAMTLATAGE--DGRPSARIVLLKGVDKRGF-VWYTNYDSRKAHELSANPKASLVFYWDGL---HRQVRVEGSVEK 359 (462)
T ss_pred CCCCCeeEEEEECC--CCCeeEEEEEEeEEcCCcE-EEEECCCCHHHHHHhhCCcEEEEeecCCC---CEEEEEEEEEEE
Confidence 45668899999998 99999877754 3676665 88888889999999999999999986433 468899999999
Q ss_pred eChh
Q 021631 175 VAEK 178 (310)
Q Consensus 175 v~~~ 178 (310)
++++
T Consensus 360 ~~~~ 363 (462)
T PLN03049 360 VSEE 363 (462)
T ss_pred CCHH
Confidence 9854
No 21
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00093 Score=54.80 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=88.9
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEE
Q 021631 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHG 170 (310)
Q Consensus 91 ~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G 170 (310)
++..+|.....+.|||+. +|.|-+-+..+.+...+.+||++...-.-++.|..||.++++-..-. ...|.|+|
T Consensus 3 d~leFLken~~~~laTve---~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kd----g~~vrlrg 75 (132)
T COG5015 3 DPLEFLKENKSVALATVE---DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKD----GVMVRLRG 75 (132)
T ss_pred cHHHHHHhCCcEEEEEcc---CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCC----ceEEEEee
Confidence 467899999999999996 79998888777776678889988888889999999999999876521 34666999
Q ss_pred EEEEeChhHHHHHHHHHHHhCCCC--ccc--ccCCeeEEEEEeeEEEE
Q 021631 171 DATSVAEKDKAAIRAVYLAKHPNA--FWV--DFGDFQFMRIEPKAVRY 214 (310)
Q Consensus 171 ~a~~v~~~e~~~l~~~y~~rhP~a--~~~--~~~df~~~rL~p~~v~~ 214 (310)
+++-++.- .++.+.++.+|-. .|. +.+-|.+|.++...+..
T Consensus 76 ~a~f~~ni---elkk~ale~yP~Lkeiy~tddnpifevfyld~~e~~m 120 (132)
T COG5015 76 RAEFVENI---ELKKLALEIYPVLKEIYPTDDNPIFEVFYLDSGEGEM 120 (132)
T ss_pred eEEeccch---HHHHHHhhhchhhHhhccCCCCCEEEEEEEeeccEEE
Confidence 99998763 4677778888876 443 34457778777666553
No 22
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.66 E-value=0.00072 Score=55.28 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCC-----chHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEE
Q 021631 99 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSL-----AVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (310)
Q Consensus 99 ~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~-----s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~ 173 (310)
...+.|-|.+. -.|.|+.+++.|+.+++ ..++..|.. +.-++||.++|+|++.+.. + +..+.++
T Consensus 7 ~p~~lL~t~GR-kSG~~r~tpl~~~~~~~-~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~g--------~-~~~~~ar 75 (113)
T TIGR00026 7 LPVLLLTTTGR-KSGKPRTTPVTYVRHDP-GVLIVASNGGAPRHPDWYKNLKANPRVRVRVGG--------K-TFVATAR 75 (113)
T ss_pred CCEEEEEECCC-CCCcEEEEEEEEEEECC-EEEEEEecCCCCCCCHHHHHhhhCCcEEEEECC--------E-EEEEEEE
Confidence 34678888865 38999999999998854 455543432 4579999999999988732 1 4789999
Q ss_pred EeChhHHHHHHHHHHHhCCCC-ccc
Q 021631 174 SVAEKDKAAIRAVYLAKHPNA-FWV 197 (310)
Q Consensus 174 ~v~~~e~~~l~~~y~~rhP~a-~~~ 197 (310)
.++++|.+++-..|.+++|.- .|.
T Consensus 76 ~v~~~e~~~~~~~~~~~~p~~~~yq 100 (113)
T TIGR00026 76 LVSGDERDQLWAGVVRLYPRYGRYQ 100 (113)
T ss_pred ECCchhHHHHHHHHHHHCcCHHHHH
Confidence 999888889999999999975 554
No 23
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=97.66 E-value=0.0012 Score=67.30 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=61.7
Q ss_pred cCCeEEEEeecCCCCCceeEEEeeE-EEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEeC
Q 021631 98 RSVRGMLSTFSQKYEGYPSGSMVDF-ACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVA 176 (310)
Q Consensus 98 ~~~~~~LaTv~~~~dG~P~~S~V~y-a~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~~v~ 176 (310)
.-+..+|||++. +|.|.+-.|-+ .+|++| .+|++...|+|.+.|.+||++++++...+. ...|.+.|.++.++
T Consensus 370 eP~Am~LATv~~--~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~l---~rQVRi~G~v~~~~ 443 (544)
T PLN02918 370 EPNAMALSTANK--DGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEEL---NRQVRVEGSVQKVP 443 (544)
T ss_pred CCccceEEeeCC--CCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeeccc---cEEEEEEEEEEECC
Confidence 456789999988 99999876655 366666 458888889999999999999999987543 46888999999997
Q ss_pred hhH
Q 021631 177 EKD 179 (310)
Q Consensus 177 ~~e 179 (310)
+++
T Consensus 444 ~~e 446 (544)
T PLN02918 444 ESE 446 (544)
T ss_pred HHH
Confidence 653
No 24
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=97.09 E-value=0.0057 Score=51.33 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=68.2
Q ss_pred CCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecC-----CchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEE
Q 021631 99 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-----LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (310)
Q Consensus 99 ~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~-----~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~ 173 (310)
...+.|.|.+. ..|.|+.+++.|..++ |..++..+. ...=++||.++|.|.+.+.. -+..+.++
T Consensus 25 ~~~~lLtt~GR-kSG~~r~tpl~~~~~g-~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~g---------~~~~~~a~ 93 (132)
T PF04075_consen 25 MPVLLLTTTGR-KSGRPRRTPLVYVRDG-GRLVVVASNGGAPRHPDWYRNLRANPEVTVEVGG---------RRRRVRAR 93 (132)
T ss_dssp EEEEEEEEE-T-TT-SEEEEEEEEEEET-TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEETT---------EEEEEEEE
T ss_pred CcEEEEEECCC-CCCCeEEEEEEEEEeC-CEEEEEEccCCCCCCChhHHhhhhCCcEEEEECC---------EEEEEEEE
Confidence 34788888876 4899999999998874 556665552 35689999999999888742 25677888
Q ss_pred EeChhHHHHHHHHHHHhCCCC-ccccc--CCeeEEEEEe
Q 021631 174 SVAEKDKAAIRAVYLAKHPNA-FWVDF--GDFQFMRIEP 209 (310)
Q Consensus 174 ~v~~~e~~~l~~~y~~rhP~a-~~~~~--~df~~~rL~p 209 (310)
.++++|.+++.+++.+.+|.- .|... -..-++.|+|
T Consensus 94 ~~~~~er~~~~~~~~~~~p~~~~y~~~t~R~ipvv~l~p 132 (132)
T PF04075_consen 94 EVTDDERARLWARLVAAYPGYADYQARTGRRIPVVVLEP 132 (132)
T ss_dssp EE-HHHHHHHHHHHHHHSTHHHHHHHHCSSTS-EEEEEE
T ss_pred EcCchHHHHHHHHHHHHCcChHHhcccCCCEeeEEEecC
Confidence 898888888999999999873 33211 1234555554
No 25
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=97.06 E-value=0.0041 Score=55.38 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=59.7
Q ss_pred hcCCeEEEEeecCCCCCceeEEEeeEE-EcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 021631 97 DRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (310)
Q Consensus 97 ~~~~~~~LaTv~~~~dG~P~~S~V~ya-~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~a~~v 175 (310)
...+..+|||+.. +|.|..-+|-|- .|.+|..++..-..+++.+||..||.+++++.-.+.+ ..|.+.|.++.+
T Consensus 54 ~~~~am~LsT~~~--d~rvssRmvLlKgl~~~gf~fytn~~~srk~kdL~~NP~Aal~Fyw~~l~---rQVRveG~ve~l 128 (228)
T KOG2586|consen 54 GEINAMTLSTADK--DGRVSSRMVLLKGLDHDGFVFYTNYGTSRKGKDLQENPNAALLFYWEDLN---RQVRVEGIVEKL 128 (228)
T ss_pred Cchhheeehhccc--cCCcceeeeeeecccCCCeEEEeeccccccccccccCCcceEEEeehhcc---ceeEEEeccccC
Confidence 3445679999987 999998777664 7788875543334799999999999999999975543 367778888888
Q ss_pred ChhH
Q 021631 176 AEKD 179 (310)
Q Consensus 176 ~~~e 179 (310)
+.++
T Consensus 129 ~~ee 132 (228)
T KOG2586|consen 129 PREE 132 (228)
T ss_pred CHHH
Confidence 7654
No 26
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=96.65 E-value=0.043 Score=47.96 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=68.1
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcC----CCCEEEEecCCchHhhhhhcCCceEEEEeeC-----C
Q 021631 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDA----DGTPILAVSSLAVHTKDLLANPKCSLLVARD-----P 158 (310)
Q Consensus 88 ~ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~----dG~~~l~vs~~s~h~rNL~~dprvSl~V~~d-----p 158 (310)
..++++++++...+|+|.|.. +|.|.+|.++|.++. .|.++-.++..-.+.+.+..+..|-+.+..+ |
T Consensus 11 d~~~l~~~i~~~pfa~Lvt~~---~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISP 87 (169)
T PF04299_consen 11 DPEELRAFIRAHPFATLVTNG---DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISP 87 (169)
T ss_dssp -HCHHHHHHHHS-EEEEEEEE---TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-C
T ss_pred CHHHHHHHHHhCCcEEEEEcC---CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECc
Confidence 345789999999999999976 577999999999884 5666677777778999898888877766541 1
Q ss_pred ----C-----C----CcceEEEEEEEEEEeC-hhHHHHHHHHHHHhC
Q 021631 159 ----E-----D----RTDLVITLHGDATSVA-EKDKAAIRAVYLAKH 191 (310)
Q Consensus 159 ----~-----~----~~~~Rvtl~G~a~~v~-~~e~~~l~~~y~~rh 191 (310)
. + .+..-|.+.|+++.++ +++..++.++..++|
T Consensus 88 sWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~~~~l~~l~~~~ 134 (169)
T PF04299_consen 88 SWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWLRAHLDRLTAHF 134 (169)
T ss_dssp CCS----STTS---EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHH
T ss_pred hhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHHHHHHHHHHHHh
Confidence 0 1 2567999999999995 455554444444443
No 27
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=96.38 E-value=0.048 Score=43.57 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=52.1
Q ss_pred cCCeEEEEeec-CCCCCceeEEE-eeEEEcCC-----CCEEEEecCCchHhhhhh-cCCceEEEEeeCCCCCcceEEEEE
Q 021631 98 RSVRGMLSTFS-QKYEGYPSGSM-VDFACDAD-----GTPILAVSSLAVHTKDLL-ANPKCSLLVARDPEDRTDLVITLH 169 (310)
Q Consensus 98 ~~~~~~LaTv~-~~~dG~P~~S~-V~ya~d~d-----G~~~l~vs~~s~h~rNL~-~dprvSl~V~~dp~~~~~~Rvtl~ 169 (310)
..++.+|||++ + +|.|.+=. |.=.+..+ ..+.|++..-+.|+..|. .||+++++..... ....+-|.
T Consensus 19 ~~~~~~LATv~~~--~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~---~~~Q~Ri~ 93 (100)
T PF12766_consen 19 PFRYFQLATVDPP--DGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPE---TREQFRIR 93 (100)
T ss_dssp GGGCEEEEEEE-T--TTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECC---CTEEEEEE
T ss_pred CCceeEEEEecCC--CCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCC---ccEEEEEE
Confidence 46689999999 5 89998744 33345544 345665666689999999 9999999999743 24577788
Q ss_pred EEEEEe
Q 021631 170 GDATSV 175 (310)
Q Consensus 170 G~a~~v 175 (310)
|++..+
T Consensus 94 G~a~ii 99 (100)
T PF12766_consen 94 GRASII 99 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888876
No 28
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=93.09 E-value=1.8 Score=38.75 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=67.0
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCC-CEEEEecCC---chHhhhhhcCCceEEEEee-C----C
Q 021631 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSL---AVHTKDLLANPKCSLLVAR-D----P 158 (310)
Q Consensus 88 ~ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG-~~~l~vs~~---s~h~rNL~~dprvSl~V~~-d----p 158 (310)
..+....|++...+|+|.|.. .|.|+++.++|.+++.+ .-+.+.+.+ -.+.+-+.....|=+++.. + |
T Consensus 11 d~~~L~a~ir~~pfgtlvt~~---~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYISP 87 (209)
T COG2808 11 DPEVLHALIRAHPFGTLVTSG---GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYISP 87 (209)
T ss_pred CHHHHHHHHHhCCceEEEecc---CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccCc
Confidence 456789999999999999976 58999999999987532 333334444 4466666654445333332 1 1
Q ss_pred ----C---------CCcceEEEEEEEEEEeChhH-HHHHHHHHHHhC
Q 021631 159 ----E---------DRTDLVITLHGDATSVAEKD-KAAIRAVYLAKH 191 (310)
Q Consensus 159 ----~---------~~~~~Rvtl~G~a~~v~~~e-~~~l~~~y~~rh 191 (310)
. .++..-|-..|++..+++++ .+.+..+....|
T Consensus 88 ~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~~ 134 (209)
T COG2808 88 AWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDEH 134 (209)
T ss_pred ccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHHh
Confidence 0 13566899999999999874 344445544444
No 29
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=89.37 E-value=1.1 Score=39.25 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCC-CCEEEEecCC-ch-HhhhhhcCCceEEEEeeCCCCCcceEEE
Q 021631 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSL-AV-HTKDLLANPKCSLLVARDPEDRTDLVIT 167 (310)
Q Consensus 91 ~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~d-G~~~l~vs~~-s~-h~rNL~~dprvSl~V~~dp~~~~~~Rvt 167 (310)
..|+++.....+.|+|++. ||.|-..+.+|+...| +...+.+.+. .. .-+||..||++++...... .......
T Consensus 33 ~~~e~~~~~~~~~laT~d~--dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~--~~~~~f~ 108 (173)
T COG3576 33 HYREFIQTSQLAALATVDK--DGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRN--RRALLFL 108 (173)
T ss_pred hhhhhhccccEEEEEEecc--CCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccC--CccceEE
Confidence 3677888899999999988 8999999999975433 3333445544 33 4456899999999776531 1123445
Q ss_pred EEEEEEEeChhH-HHHHHHHHHHhCCCCcccccCCeeEEEEEeeEEEEEe
Q 021631 168 LHGDATSVAEKD-KAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (310)
Q Consensus 168 l~G~a~~v~~~e-~~~l~~~y~~rhP~a~~~~~~df~~~rL~p~~v~~v~ 216 (310)
+.|.++...+.. .....+.+... ..++.......+.++.++++.
T Consensus 109 v~gt~~I~~~g~~~~~~~~~~~~~-----~~~l~pk~~~vv~v~~v~~~~ 153 (173)
T COG3576 109 VKGTARIQGRGAVYDAVVKLAAFL-----MDGLPPKSAIVVTVEEVYFLA 153 (173)
T ss_pred ecceEEEEeccceehHHhhhhHhh-----ccCCCCceeEEEEeehhhhhh
Confidence 555555543211 11111111111 112233456777788887654
No 30
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=82.49 E-value=3.3 Score=36.27 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=41.0
Q ss_pred EEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCC
Q 021631 102 GMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (310)
Q Consensus 102 ~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp 158 (310)
+.+.|.+. + .|+.+++...++ ++.+++.+-..|...+||..++.+++-|.+||
T Consensus 3 ~IvtT~~~--~-~~N~APiGi~~~-~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~Dp 55 (177)
T PF04289_consen 3 VIVTTKNE--D-EPNAAPIGIIRD-GDELIIRLFKGSHTYENLKETGYFVVNITDDP 55 (177)
T ss_dssp EEEEEEST--T--EEEEEEEEEES-SSEEEEEEETTSHHHHHHHHHSEEEEEE---H
T ss_pred EEEEECCC--C-CCcCCcEEEEEE-CCEEEEEEcCCCchHHHHhhCCEEEEEECCCH
Confidence 46778776 6 899999998886 45677888888999999999999999998764
No 31
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=39.56 E-value=1.4e+02 Score=22.53 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=35.1
Q ss_pred HHHHHHhc--CCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEE
Q 021631 91 EIRTVLDR--SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLV 154 (310)
Q Consensus 91 ~aRtlL~~--~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V 154 (310)
.+..+-.. .+.-+-+|+ +|.+|-+.+ ...++|..+|.++..-++...+.....|++.+
T Consensus 21 v~~~l~~~~~g~v~V~~tI----~g~~~~~sl--~p~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~l 80 (80)
T PF08922_consen 21 VAEELGEGGWGRVPVRGTI----DGHPWRTSL--FPMGNGGYILPVKAAVRKAIGKEAGDTVEVTL 80 (80)
T ss_dssp HHHHH--S--S-EEEEEEE----TTEEEEEEE--EESSTT-EEEEE-HHHHHHHT--TTSEEEEEE
T ss_pred HHHHhccccCCceEEEEEE----CCEEEEEEE--EECCCCCEEEEEcHHHHHHcCCCCCCEEEEEC
Confidence 34444444 567778888 689986533 33678888888887777777777777777654
No 32
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.87 E-value=3e+02 Score=22.58 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=53.2
Q ss_pred HhcCCeEEEEeecCCCCCceeE--EEeeEEEcCCCCEEEEecCC--chHhhhhhcCCceEEEEeeCCCCCcceEEEEEEE
Q 021631 96 LDRSVRGMLSTFSQKYEGYPSG--SMVDFACDADGTPILAVSSL--AVHTKDLLANPKCSLLVARDPEDRTDLVITLHGD 171 (310)
Q Consensus 96 L~~~~~~~LaTv~~~~dG~P~~--S~V~ya~d~dG~~~l~vs~~--s~h~rNL~~dprvSl~V~~dp~~~~~~Rvtl~G~ 171 (310)
+..+....+++... ||.-++ +.+|.+.. ++.+|+-.-.. +.-++......+..+.+.. +...=.
T Consensus 6 i~~adel~iap~r~--DG~t~~~p~~IW~V~v-dd~lYVRs~~G~~s~Wy~~A~~~~~GrI~a~G---------~~~dV~ 73 (116)
T PF10012_consen 6 IDAADELHIAPFRE--DGKTLRTPTWIWVVRV-DDDLYVRSYNGRNSRWYRAALAQGAGRIRAGG---------VEKDVT 73 (116)
T ss_pred cCccceEEeccccC--CCcccCCCeeEEEEEE-CCEEEEEecCCCcCHHHHHHhhCCCcEEEECC---------EEeeEE
Confidence 55677788888887 895444 66677765 56777654433 4555554444444443322 112223
Q ss_pred EEEe-ChhHHHHHHHHHHHhCCCCcc
Q 021631 172 ATSV-AEKDKAAIRAVYLAKHPNAFW 196 (310)
Q Consensus 172 a~~v-~~~e~~~l~~~y~~rhP~a~~ 196 (310)
.+++ +++....+-+.|.+||....|
T Consensus 74 F~~v~d~~~~~~iD~AYr~KY~~s~y 99 (116)
T PF10012_consen 74 FEPVTDPALNDAIDAAYRAKYGGSPY 99 (116)
T ss_pred EEeCCCHHHHHHHHHHHHHhcCCCCc
Confidence 3445 344567899999999987533
No 33
>COG2457 Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=1.9e+02 Score=26.07 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=37.4
Q ss_pred EEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCC
Q 021631 102 GMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (310)
Q Consensus 102 ~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp 158 (310)
+.+.|-+. +| .+.++...+- ++.+.+.+-..++.+.|+..+..+++.|..||
T Consensus 18 viviT~~~--~~--N~aPIGIi~~-gd~~~~kLy~GsrT~eNl~~~~~~~vnVv~D~ 69 (199)
T COG2457 18 VIVITRGE--NP--NAAPIGIIVK-GDKLKVKLYKGSRTYENLEKSNYLSVNVVDDP 69 (199)
T ss_pred EEEEecCC--CC--CcCceEEEEe-CCEEEEEEecCcchHHHHhhcCeEEEEecCCH
Confidence 44556544 22 4444444443 45778888888999999999999999999876
No 34
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=23.13 E-value=1.4e+02 Score=24.61 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=36.0
Q ss_pred eEEEEeecCCCCCceeEEEeeEEE---cCCCCEEEEecCCchHhhhhhcCCceEEEEee
Q 021631 101 RGMLSTFSQKYEGYPSGSMVDFAC---DADGTPILAVSSLAVHTKDLLANPKCSLLVAR 156 (310)
Q Consensus 101 ~~~LaTv~~~~dG~P~~S~V~ya~---d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~ 156 (310)
.+.++| .. +|.+.+..+.++. .+-..+.+.+...+...+||++.+.+++.+..
T Consensus 8 v~vvtt-~~--~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~ 63 (154)
T PF01613_consen 8 VAVVTT-DE--DGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLS 63 (154)
T ss_dssp -EEEEE-EE--TTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEB
T ss_pred cEEEEE-CC--CCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCH
Confidence 456777 65 7888776665432 11234556666777788899999999888865
Done!