Query 021632
Match_columns 310
No_of_seqs 83 out of 85
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 99.8 1.1E-21 2.5E-26 153.4 4.5 40 13-52 35-74 (74)
2 PF08614 ATG16: Autophagy prot 94.6 0.41 8.9E-06 42.3 10.2 80 109-188 92-185 (194)
3 PF04849 HAP1_N: HAP1 N-termin 94.0 3.2 7E-05 40.6 15.7 126 104-245 159-302 (306)
4 PF06785 UPF0242: Uncharacteri 92.1 5.9 0.00013 40.0 14.6 74 159-232 139-214 (401)
5 PF10174 Cast: RIM-binding pro 92.0 8.8 0.00019 41.7 16.8 129 104-237 286-417 (775)
6 TIGR02169 SMC_prok_A chromosom 91.7 13 0.00028 39.3 17.3 26 214-239 905-930 (1164)
7 COG2433 Uncharacterized conser 91.2 5.2 0.00011 42.7 13.9 130 114-243 347-505 (652)
8 TIGR02168 SMC_prok_B chromosom 91.1 16 0.00034 38.3 17.2 24 213-236 825-848 (1179)
9 PF05701 WEMBL: Weak chloropla 90.9 21 0.00044 36.6 18.0 165 107-284 297-471 (522)
10 PF04156 IncA: IncA protein; 90.6 9.9 0.00021 32.8 12.9 72 110-188 79-150 (191)
11 TIGR02168 SMC_prok_B chromosom 90.3 22 0.00047 37.4 17.3 28 213-240 818-845 (1179)
12 PF00038 Filament: Intermediat 89.3 18 0.00038 33.4 15.7 74 104-177 60-133 (312)
13 PRK09039 hypothetical protein; 89.0 14 0.0003 36.0 13.9 41 206-246 138-185 (343)
14 TIGR02169 SMC_prok_A chromosom 88.9 30 0.00065 36.6 17.2 11 42-52 204-214 (1164)
15 PHA02562 46 endonuclease subun 88.6 23 0.00049 35.0 15.3 34 212-245 358-391 (562)
16 PF07888 CALCOCO1: Calcium bin 87.1 44 0.00095 35.4 17.1 72 109-180 154-232 (546)
17 PF04012 PspA_IM30: PspA/IM30 86.0 23 0.00049 31.4 12.5 68 122-189 26-94 (221)
18 KOG0804 Cytoplasmic Zn-finger 85.8 12 0.00026 39.0 11.8 12 213-224 436-447 (493)
19 PF08317 Spc7: Spc7 kinetochor 85.4 35 0.00077 32.6 14.4 32 213-244 231-262 (325)
20 COG1579 Zn-ribbon protein, pos 83.8 41 0.00088 32.0 15.8 124 102-225 35-169 (239)
21 PF11221 Med21: Subunit 21 of 83.6 14 0.00031 31.6 9.8 75 102-176 66-140 (144)
22 PF04111 APG6: Autophagy prote 83.2 17 0.00038 35.0 11.2 86 104-189 42-127 (314)
23 PF12718 Tropomyosin_1: Tropom 83.2 30 0.00064 30.0 13.6 30 209-238 77-106 (143)
24 PF10473 CENP-F_leu_zip: Leuci 82.4 34 0.00074 30.1 13.0 68 160-243 51-118 (140)
25 PF08614 ATG16: Autophagy prot 81.9 19 0.00042 31.8 10.3 48 197-246 145-192 (194)
26 KOG0996 Structural maintenance 80.8 32 0.00069 39.6 13.5 70 106-175 779-848 (1293)
27 PRK09039 hypothetical protein; 80.6 59 0.0013 31.7 15.7 21 123-143 43-63 (343)
28 KOG4643 Uncharacterized coiled 80.3 37 0.00081 38.7 13.6 84 161-246 205-291 (1195)
29 PHA02562 46 endonuclease subun 79.6 55 0.0012 32.4 13.5 24 213-236 300-323 (562)
30 PRK02224 chromosome segregatio 79.2 75 0.0016 33.6 15.0 70 133-202 370-446 (880)
31 KOG0612 Rho-associated, coiled 78.3 14 0.00029 42.5 9.8 69 172-243 462-532 (1317)
32 KOG4360 Uncharacterized coiled 78.1 72 0.0016 34.1 14.3 122 109-246 170-302 (596)
33 PRK02224 chromosome segregatio 77.2 1E+02 0.0022 32.6 16.9 32 214-245 608-639 (880)
34 COG1196 Smc Chromosome segrega 77.1 1.1E+02 0.0023 34.3 16.1 17 212-228 949-965 (1163)
35 KOG4673 Transcription factor T 76.6 64 0.0014 35.8 13.8 94 141-234 517-634 (961)
36 PF08317 Spc7: Spc7 kinetochor 75.7 58 0.0013 31.2 12.1 31 213-243 238-268 (325)
37 PF05622 HOOK: HOOK protein; 75.4 0.91 2E-05 47.3 0.0 68 175-245 291-358 (713)
38 PRK11637 AmiB activator; Provi 74.5 72 0.0016 31.4 12.7 58 122-179 43-100 (428)
39 KOG4643 Uncharacterized coiled 73.5 80 0.0017 36.2 13.9 52 186-237 496-555 (1195)
40 COG1196 Smc Chromosome segrega 71.5 1.1E+02 0.0025 34.1 14.7 32 210-241 465-496 (1163)
41 PRK15422 septal ring assembly 71.3 52 0.0011 26.9 9.1 52 131-182 9-60 (79)
42 KOG4674 Uncharacterized conser 71.1 1.8E+02 0.0039 35.2 16.5 137 108-244 1000-1138(1822)
43 PF09744 Jnk-SapK_ap_N: JNK_SA 70.7 60 0.0013 29.0 10.2 84 101-187 32-115 (158)
44 PF15294 Leu_zip: Leucine zipp 70.5 23 0.0005 34.5 8.1 110 114-225 81-203 (278)
45 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.3 64 0.0014 27.1 15.1 29 209-237 102-130 (132)
46 PF00261 Tropomyosin: Tropomyo 70.1 88 0.0019 28.6 13.3 75 159-235 83-157 (237)
47 COG4026 Uncharacterized protei 69.5 53 0.0011 32.0 10.1 108 107-237 100-209 (290)
48 smart00787 Spc7 Spc7 kinetocho 69.1 1.2E+02 0.0025 29.6 12.7 106 141-246 138-259 (312)
49 PF05667 DUF812: Protein of un 68.9 1.6E+02 0.0036 31.2 15.0 31 213-243 448-478 (594)
50 PF07888 CALCOCO1: Calcium bin 68.2 99 0.0021 32.9 12.6 45 145-189 155-199 (546)
51 PF04849 HAP1_N: HAP1 N-termin 67.6 87 0.0019 31.0 11.4 84 107-193 201-287 (306)
52 KOG4571 Activating transcripti 67.5 13 0.00028 36.5 5.8 32 213-244 249-280 (294)
53 COG1579 Zn-ribbon protein, pos 67.5 1.2E+02 0.0025 29.0 13.6 91 141-233 53-145 (239)
54 PF10046 BLOC1_2: Biogenesis o 65.6 65 0.0014 26.0 8.7 30 213-242 67-96 (99)
55 KOG0161 Myosin class II heavy 64.8 3.1E+02 0.0067 33.5 16.9 14 212-225 1097-1110(1930)
56 PF04156 IncA: IncA protein; 64.6 93 0.002 26.8 12.8 33 127-159 82-114 (191)
57 PRK04863 mukB cell division pr 63.9 1.8E+02 0.0038 34.3 14.6 74 107-180 987-1060(1486)
58 PRK03918 chromosome segregatio 61.5 2.2E+02 0.0047 30.0 16.7 7 304-310 435-442 (880)
59 TIGR00606 rad50 rad50. This fa 61.4 2.9E+02 0.0063 31.4 17.0 99 105-203 822-923 (1311)
60 smart00787 Spc7 Spc7 kinetocho 61.1 1.7E+02 0.0036 28.6 14.1 116 122-243 147-263 (312)
61 KOG1962 B-cell receptor-associ 60.4 31 0.00068 32.5 6.7 62 110-171 149-210 (216)
62 KOG0976 Rho/Rac1-interacting s 58.6 1.9E+02 0.0042 32.9 13.1 89 124-222 90-186 (1265)
63 PLN02939 transferase, transfer 58.2 97 0.0021 35.0 11.0 57 166-228 224-280 (977)
64 PF14662 CCDC155: Coiled-coil 57.6 1.7E+02 0.0036 27.5 11.5 92 149-246 10-101 (193)
65 PF05911 DUF869: Plant protein 57.5 1.6E+02 0.0035 32.4 12.3 66 111-176 609-674 (769)
66 PF15254 CCDC14: Coiled-coil d 57.3 2.3E+02 0.005 31.8 13.3 33 213-245 509-541 (861)
67 KOG1853 LIS1-interacting prote 57.3 1.4E+02 0.003 29.7 10.7 17 123-143 31-47 (333)
68 PF06005 DUF904: Protein of un 57.2 94 0.002 24.5 8.6 25 131-155 9-33 (72)
69 KOG0977 Nuclear envelope prote 55.9 2.8E+02 0.0061 29.6 14.7 82 126-207 56-145 (546)
70 PF06005 DUF904: Protein of un 54.3 83 0.0018 24.7 7.2 29 139-167 10-38 (72)
71 KOG0161 Myosin class II heavy 54.1 4.9E+02 0.011 32.0 16.1 129 109-240 1453-1590(1930)
72 PF14739 DUF4472: Domain of un 53.5 1.4E+02 0.0031 25.5 9.3 77 113-192 11-87 (108)
73 PF12325 TMF_TATA_bd: TATA ele 52.9 1.5E+02 0.0032 25.4 10.4 76 139-225 29-109 (120)
74 KOG0982 Centrosomal protein Nu 52.4 3.1E+02 0.0067 29.0 14.1 72 162-242 298-369 (502)
75 KOG0239 Kinesin (KAR3 subfamil 52.4 3.4E+02 0.0073 29.4 15.4 67 164-235 230-296 (670)
76 KOG4809 Rab6 GTPase-interactin 52.3 3.4E+02 0.0075 29.5 13.3 65 139-203 312-380 (654)
77 PRK13169 DNA replication intia 52.0 48 0.001 28.1 5.9 41 152-192 13-53 (110)
78 PF06156 DUF972: Protein of un 52.0 49 0.0011 27.7 6.0 35 159-193 20-54 (107)
79 PF12718 Tropomyosin_1: Tropom 51.4 1.6E+02 0.0035 25.5 15.3 14 165-178 77-90 (143)
80 PF05600 DUF773: Protein of un 50.6 1.4E+02 0.003 31.0 10.0 99 109-210 112-212 (507)
81 TIGR02977 phageshock_pspA phag 50.3 2E+02 0.0043 26.1 14.1 112 130-241 35-149 (219)
82 PF05130 FlgN: FlgN protein; 50.1 1.2E+02 0.0027 23.7 11.3 26 139-164 11-36 (143)
83 KOG0250 DNA repair protein RAD 49.8 3.1E+02 0.0067 31.6 13.1 75 129-203 277-358 (1074)
84 PF08172 CASP_C: CASP C termin 49.2 1.8E+02 0.0038 27.6 9.8 113 131-251 4-138 (248)
85 PF05557 MAD: Mitotic checkpoi 48.9 5.7 0.00012 41.6 0.0 47 39-85 2-48 (722)
86 KOG2077 JNK/SAPK-associated pr 48.7 2.6E+02 0.0056 30.8 11.8 71 149-225 331-426 (832)
87 PF09726 Macoilin: Transmembra 48.5 2.5E+02 0.0055 30.4 11.9 25 213-237 630-654 (697)
88 PF10146 zf-C4H2: Zinc finger- 47.8 2.5E+02 0.0053 26.5 11.8 85 112-196 4-88 (230)
89 KOG0709 CREB/ATF family transc 47.6 69 0.0015 33.5 7.3 42 206-247 280-321 (472)
90 TIGR02680 conserved hypothetic 47.5 5.1E+02 0.011 30.1 15.2 53 183-237 334-386 (1353)
91 KOG4674 Uncharacterized conser 46.5 5E+02 0.011 31.8 14.5 104 113-226 144-252 (1822)
92 PF10226 DUF2216: Uncharacteri 46.0 2.6E+02 0.0057 26.3 13.2 106 111-242 29-145 (195)
93 KOG0980 Actin-binding protein 44.5 5.4E+02 0.012 29.5 16.2 84 140-225 424-521 (980)
94 PF08946 Osmo_CC: Osmosensory 44.5 29 0.00062 26.0 3.1 23 212-234 19-41 (46)
95 PF06156 DUF972: Protein of un 44.0 1.1E+02 0.0023 25.8 6.7 55 121-175 3-57 (107)
96 KOG0612 Rho-associated, coiled 44.0 3.5E+02 0.0075 31.9 12.5 72 160-240 580-651 (1317)
97 PRK04778 septation ring format 43.8 3.4E+02 0.0075 28.1 11.7 44 147-190 293-339 (569)
98 PF15272 BBP1_C: Spindle pole 43.7 2.8E+02 0.006 26.0 10.0 33 24-56 44-79 (196)
99 COG2433 Uncharacterized conser 43.4 1.9E+02 0.0041 31.5 10.0 61 139-199 442-505 (652)
100 PF06632 XRCC4: DNA double-str 43.2 1.2E+02 0.0025 30.2 7.9 26 206-231 185-213 (342)
101 PF00261 Tropomyosin: Tropomyo 43.0 2.7E+02 0.0058 25.5 13.9 15 132-146 112-126 (237)
102 PRK10884 SH3 domain-containing 42.0 2.8E+02 0.0062 25.6 10.0 18 213-230 154-171 (206)
103 PF09730 BicD: Microtubule-ass 41.1 5.3E+02 0.012 28.4 15.4 76 164-244 355-430 (717)
104 PF05667 DUF812: Protein of un 39.8 5E+02 0.011 27.8 14.8 11 32-42 248-258 (594)
105 PF00170 bZIP_1: bZIP transcri 39.5 73 0.0016 23.5 4.6 33 213-245 27-59 (64)
106 PF14197 Cep57_CLD_2: Centroso 39.5 1.8E+02 0.004 22.6 7.0 29 152-180 3-31 (69)
107 TIGR02449 conserved hypothetic 38.9 1.9E+02 0.0041 22.7 7.0 59 122-180 3-61 (65)
108 PF04111 APG6: Autophagy prote 38.6 3.8E+02 0.0082 26.0 10.8 14 213-226 121-134 (314)
109 KOG0980 Actin-binding protein 38.3 3.7E+02 0.008 30.7 11.4 67 135-201 482-549 (980)
110 KOG0933 Structural maintenance 38.3 6.1E+02 0.013 29.6 13.1 81 211-308 964-1049(1174)
111 PF10473 CENP-F_leu_zip: Leuci 38.2 2.8E+02 0.0061 24.5 13.6 82 118-199 16-104 (140)
112 COG1842 PspA Phage shock prote 38.2 3.4E+02 0.0074 25.4 12.7 67 123-189 28-95 (225)
113 PF08826 DMPK_coil: DMPK coile 37.8 1.8E+02 0.0038 22.5 6.6 29 217-245 30-58 (61)
114 PRK13169 DNA replication intia 37.5 1.3E+02 0.0028 25.6 6.3 53 121-173 3-55 (110)
115 PF02403 Seryl_tRNA_N: Seryl-t 36.3 1.3E+02 0.0028 23.9 5.9 35 109-143 26-60 (108)
116 TIGR03007 pepcterm_ChnLen poly 35.9 4.4E+02 0.0096 26.0 12.0 14 27-40 77-90 (498)
117 TIGR00606 rad50 rad50. This fa 35.4 7.3E+02 0.016 28.4 17.1 61 106-166 985-1047(1311)
118 PF07716 bZIP_2: Basic region 35.1 76 0.0016 22.9 4.0 29 213-241 26-54 (54)
119 PF01486 K-box: K-box region; 34.8 1.2E+02 0.0026 24.2 5.5 46 124-169 47-97 (100)
120 PF09340 NuA4: Histone acetylt 34.7 45 0.00097 26.5 3.0 28 193-226 3-30 (80)
121 KOG0996 Structural maintenance 34.5 8.5E+02 0.018 28.9 15.8 16 140-155 834-849 (1293)
122 smart00574 POX domain associat 33.7 49 0.0011 29.5 3.4 30 17-47 67-96 (140)
123 PF11932 DUF3450: Protein of u 33.2 3.8E+02 0.0083 24.5 12.3 57 145-201 54-110 (251)
124 PF08647 BRE1: BRE1 E3 ubiquit 32.7 2.6E+02 0.0057 22.5 9.1 64 126-189 3-66 (96)
125 KOG0971 Microtubule-associated 32.3 5.9E+02 0.013 29.6 11.8 46 139-184 461-509 (1243)
126 TIGR01010 BexC_CtrB_KpsE polys 32.3 4.5E+02 0.0098 25.1 10.0 24 200-223 236-260 (362)
127 KOG0244 Kinesin-like protein [ 32.1 1.6E+02 0.0035 33.2 7.6 18 34-51 400-417 (913)
128 PRK14154 heat shock protein Gr 31.9 60 0.0013 30.3 3.8 40 204-243 44-83 (208)
129 KOG4673 Transcription factor T 31.6 8.1E+02 0.018 27.8 15.2 38 160-200 408-445 (961)
130 smart00338 BRLZ basic region l 31.6 1.2E+02 0.0026 22.3 4.7 47 136-182 14-61 (65)
131 PRK10203 hypothetical protein; 30.7 3E+02 0.0064 23.9 7.5 69 164-236 43-116 (122)
132 PF00170 bZIP_1: bZIP transcri 30.2 1.6E+02 0.0036 21.6 5.2 34 147-180 26-59 (64)
133 KOG4603 TBP-1 interacting prot 30.1 2.8E+02 0.006 26.2 7.7 71 148-239 73-143 (201)
134 PF00769 ERM: Ezrin/radixin/mo 29.8 4.7E+02 0.01 24.5 12.5 23 135-157 28-50 (246)
135 TIGR01843 type_I_hlyD type I s 29.6 4.8E+02 0.01 24.5 15.0 12 215-226 249-260 (423)
136 KOG4677 Golgi integral membran 29.4 6.5E+02 0.014 27.0 10.9 25 206-230 331-355 (554)
137 KOG3856 Uncharacterized conser 29.3 68 0.0015 28.6 3.5 31 187-226 15-45 (135)
138 COG4942 Membrane-bound metallo 29.2 6.3E+02 0.014 26.3 10.7 62 126-187 38-99 (420)
139 PF07526 POX: Associated with 29.0 83 0.0018 27.4 4.0 31 16-47 66-96 (140)
140 cd00584 Prefoldin_alpha Prefol 29.0 2.3E+02 0.0051 23.1 6.5 33 211-243 93-125 (129)
141 KOG1510 RNA polymerase II holo 28.8 4.4E+02 0.0094 23.8 11.4 119 40-176 8-127 (139)
142 PF09728 Taxilin: Myosin-like 28.5 4E+02 0.0087 25.9 8.9 76 165-242 26-101 (309)
143 PF14197 Cep57_CLD_2: Centroso 28.0 2.9E+02 0.0063 21.5 7.6 50 133-189 12-61 (69)
144 PF13094 CENP-Q: CENP-Q, a CEN 27.4 3.4E+02 0.0075 23.2 7.4 36 119-154 20-55 (160)
145 KOG2077 JNK/SAPK-associated pr 27.3 4.1E+02 0.0089 29.4 9.3 56 147-203 318-384 (832)
146 PF05278 PEARLI-4: Arabidopsis 27.1 6.1E+02 0.013 24.9 11.5 86 26-129 91-176 (269)
147 PF07544 Med9: RNA polymerase 26.9 3E+02 0.0066 21.7 6.5 57 175-239 21-79 (83)
148 PF04880 NUDE_C: NUDE protein, 26.7 1E+02 0.0022 28.0 4.2 35 128-166 2-36 (166)
149 PF11932 DUF3450: Protein of u 26.5 5E+02 0.011 23.8 10.9 57 139-198 62-118 (251)
150 smart00338 BRLZ basic region l 26.5 1.5E+02 0.0033 21.7 4.5 33 213-245 27-59 (65)
151 COG3074 Uncharacterized protei 26.5 3.7E+02 0.0079 22.1 8.0 43 147-189 18-60 (79)
152 PF08687 ASD2: Apx/Shroom doma 26.1 2.8E+02 0.0061 26.9 7.3 99 142-246 95-217 (264)
153 KOG3850 Predicted membrane pro 25.5 8.1E+02 0.018 25.8 11.7 94 121-226 262-367 (455)
154 PF12017 Tnp_P_element: Transp 25.3 2.2E+02 0.0047 26.9 6.3 24 213-236 19-42 (236)
155 PF12128 DUF3584: Protein of u 25.2 1.1E+03 0.023 27.0 17.2 128 109-246 625-763 (1201)
156 PLN03229 acetyl-coenzyme A car 25.1 1E+03 0.022 26.8 12.0 102 141-244 560-684 (762)
157 PF12808 Mto2_bdg: Micro-tubul 25.0 2E+02 0.0043 21.8 4.9 47 141-187 2-48 (52)
158 KOG0239 Kinesin (KAR3 subfamil 25.0 6E+02 0.013 27.6 10.1 91 150-246 230-320 (670)
159 COG1340 Uncharacterized archae 24.7 7E+02 0.015 24.8 15.0 87 146-234 164-250 (294)
160 KOG4787 Uncharacterized conser 24.1 3.7E+02 0.008 29.8 8.3 95 109-210 463-572 (852)
161 PF04977 DivIC: Septum formati 24.1 1.5E+02 0.0034 21.6 4.2 29 210-238 22-50 (80)
162 KOG0971 Microtubule-associated 23.9 1.2E+03 0.026 27.3 15.6 122 123-246 407-545 (1243)
163 PF05300 DUF737: Protein of un 23.8 5.8E+02 0.013 23.6 9.6 79 142-236 93-172 (187)
164 PF00769 ERM: Ezrin/radixin/mo 23.6 6.1E+02 0.013 23.7 12.4 35 147-181 33-67 (246)
165 PF09006 Surfac_D-trimer: Lung 23.4 92 0.002 23.3 2.8 23 210-232 4-26 (46)
166 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.1 4.5E+02 0.0098 22.0 9.3 29 151-179 7-35 (132)
167 KOG0962 DNA repair protein RAD 23.0 1.3E+03 0.029 27.4 14.0 131 109-246 998-1129(1294)
168 TIGR00763 lon ATP-dependent pr 22.5 4.2E+02 0.009 28.5 8.5 12 299-310 348-359 (775)
169 KOG4687 Uncharacterized coiled 22.4 7.1E+02 0.015 25.3 9.4 49 159-207 165-214 (389)
170 PRK15422 septal ring assembly 22.4 4.5E+02 0.0097 21.7 7.9 51 139-189 10-60 (79)
171 PF09755 DUF2046: Uncharacteri 22.3 8E+02 0.017 24.6 12.9 52 180-236 227-278 (310)
172 KOG0982 Centrosomal protein Nu 22.2 9.7E+02 0.021 25.5 11.4 100 139-245 221-330 (502)
173 COG4942 Membrane-bound metallo 21.9 6.2E+02 0.013 26.3 9.1 69 108-176 41-109 (420)
174 TIGR00414 serS seryl-tRNA synt 21.5 7E+02 0.015 25.0 9.3 86 105-194 9-95 (418)
175 PF13851 GAS: Growth-arrest sp 21.4 6.2E+02 0.014 23.0 15.7 73 169-246 94-170 (201)
176 PF05701 WEMBL: Weak chloropla 21.1 9.3E+02 0.02 24.9 16.6 75 124-201 286-360 (522)
177 KOG0963 Transcription factor/C 20.9 1.1E+03 0.025 25.8 12.4 114 113-245 229-343 (629)
178 PF13870 DUF4201: Domain of un 20.8 5.6E+02 0.012 22.2 15.4 67 160-228 90-168 (177)
179 PF15456 Uds1: Up-regulated Du 20.8 5.5E+02 0.012 22.1 9.8 35 208-242 84-118 (124)
180 PRK04863 mukB cell division pr 20.7 1.5E+03 0.032 27.1 16.5 8 149-156 323-330 (1486)
181 PF09798 LCD1: DNA damage chec 20.3 3.8E+02 0.0083 29.2 7.6 31 139-169 32-62 (654)
182 PRK10803 tol-pal system protei 20.3 5.1E+02 0.011 24.4 7.7 28 213-240 76-103 (263)
183 PF12128 DUF3584: Protein of u 20.1 1.3E+03 0.029 26.3 14.2 53 106-158 601-653 (1201)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=99.84 E-value=1.1e-21 Score=153.38 Aligned_cols=40 Identities=48% Similarity=0.944 Sum_probs=38.5
Q ss_pred ccccccHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 021632 13 ENVGDTFAERAEWYYQKRPQLLALLKDLYNGYITLLDRCR 52 (310)
Q Consensus 13 eedgDSFAkRAEmYYqkRPeLi~~vee~yr~YraLAeRYd 52 (310)
++||||||+||||||+|||+||++||||||+||+||||||
T Consensus 35 eedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 35 EEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999996
No 2
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.58 E-value=0.41 Score=42.28 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhh--------------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVC--------------NESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVM 174 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~--------------~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~ 174 (310)
++...++..+.+...+..++...++.+ ..-...|+-+...++.|..|-.+|--++-.+.-++..++
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444444433333 333445666667888888888888778888888999999
Q ss_pred HHhhhhhHHHHHHH
Q 021632 175 EENKGLASEAMFMR 188 (310)
Q Consensus 175 eEnk~~asEa~fmk 188 (310)
.||+.|-.-.|-.|
T Consensus 172 ~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 172 EENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998765444333
No 3
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.00 E-value=3.2 Score=40.62 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=77.2
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhh------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMD------------------HVCNESRRKIELLKSLMELLESERMILVNENVK 165 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~e------------------r~~~Es~rkieLlk~ll~vLesEr~vll~Ena~ 165 (310)
....+.++-.+=..--|...|+.|+++.- +++.+|..+|.-|.+.|..-..|-..+=+|+.+
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555445555556666555443 344444555555555555544454555566666
Q ss_pred hhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 166 LGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 166 Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
|=.++..++...|..+.|---|. ..+...++-|+ .|++++..|+.+..+|...|.-+..|++..
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~-------q~L~~ske~Q~---------~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQ-------QHLQASKESQR---------QLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666644333 33444444443 368999999999999999999999998866
No 4
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.08 E-value=5.9 Score=39.99 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=55.4
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhh--hhHHHHHHHHHHHHhhcHHHH
Q 021632 159 LVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILS--QKIEDLQEQIYGLEKRNKEYY 232 (310)
Q Consensus 159 ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~--rKIe~Lq~qIy~lE~rnre~y 232 (310)
+-+||++|.-++.+++-|.++-.-|+--+-|+++|.-+-.....+.|.+-+.- -=|..=|+.|-.||.+.+.+.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998888777777777755322110 013445788888888877753
No 5
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.98 E-value=8.8 Score=41.69 Aligned_cols=129 Identities=22% Similarity=0.266 Sum_probs=94.2
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHH
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASE 183 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asE 183 (310)
...+|.+-.+|--+.-|-..+.-++...+.+..+...-|+++|..|.-.+.+...|..++=+|.|++-......-....=
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44477777777777777777777777777777888779999999999999999999999999999987544332221111
Q ss_pred HHHHHHhhHHHHHH---HHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 184 AMFMRRKASELAKC---VLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 184 a~fmkr~a~ELArc---vlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
+.-+.. |+++. +-+|++.|.++= +||..||++|-.||.-.++=..++..
T Consensus 366 ~~~~qe---E~~~~~~Ei~~l~d~~d~~e--~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 366 IEKLQE---EKSRLQGEIEDLRDMLDKKE--RKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334 45554 667788888874 49999999999999888775554443
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.69 E-value=13 Score=39.34 Aligned_cols=26 Identities=38% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHH
Q 021632 214 IEDLQEQIYGLEKRNKEYYQMLVNRE 239 (310)
Q Consensus 214 Ie~Lq~qIy~lE~rnre~yeql~~~E 239 (310)
+..++.+|..++.+-..+-..+....
T Consensus 905 ~~~l~~~~~~~~~~~~~l~~~~~~~~ 930 (1164)
T TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALE 930 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433333333333333
No 7
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=5.2 Score=42.74 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=88.3
Q ss_pred HHHHhhhhHHHHHHhhhhhhhhhhh-------HHHHHHH-----HHHHHHHHHHHH----------------HHHhhhhh
Q 021632 114 LVAKNVESEILVNQVNEMDHVCNES-------RRKIELL-----KSLMELLESERM----------------ILVNENVK 165 (310)
Q Consensus 114 lVa~nve~d~l~del~~~er~~~Es-------~rkieLl-----k~ll~vLesEr~----------------vll~Ena~ 165 (310)
|-|+---|.-....+.++|+.+-+. .+|..++ ...|+..+.++. +..++.-.
T Consensus 347 LAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~ 426 (652)
T COG2433 347 LAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKK 426 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhccccccccccccccchhHHHHHHHH
Confidence 4455556777888888888888655 2344443 255555554443 25788899
Q ss_pred hhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchh-hhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 166 LGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYR-VCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 166 Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhr-vc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
++-++..+.+||+.|..+..-||+.--+|=.-+-.+|...+ --...|+|+.++..|+.|+..-.+=+......+....
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999966555444444444222 2234688999999999999766665554444444433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.12 E-value=16 Score=38.33 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLV 236 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~ 236 (310)
.+..|+.++..++.+....-.++.
T Consensus 825 ~~~~l~~~~~~l~~~~~~~~~~l~ 848 (1179)
T TIGR02168 825 RLESLERRIAATERRLEDLEEQIE 848 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 9
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.92 E-value=21 Score=36.57 Aligned_cols=165 Identities=22% Similarity=0.197 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhh-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 107 IDDLVAELVAKNVESEILVNQVN-------EMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 107 idelvaelVa~nve~d~l~del~-------~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
++.+-.++-..+...+.|..||. .+-.+...+...|.-|..-+..+.+|-.++..+-.+....++.+......
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqq 376 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQ 376 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 33334444444444444555443 33333334444555555555555555555444334433444444445555
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHH---HHHHHHhhhhccCCCCCCC
Q 021632 180 LASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVN---REQQVKEYENSWSNSNSTS 256 (310)
Q Consensus 180 ~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~---~E~e~~~~~~~~~~~~~~~ 256 (310)
+.+|+--+|+.+..+-.=+.+.+.+ |+.....|..+|.|-...-..++. .|.---..+..++.+.+++
T Consensus 377 l~~Eae~Ak~ea~~~~~E~~~~k~E---------~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~ 447 (522)
T PF05701_consen 377 LSSEAEEAKKEAEEAKEEVEKAKEE---------AEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSS 447 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 6666666666554443344444442 444455555555554443333322 2222223334444444333
Q ss_pred CCccccccccccccchhhhhhhhhHHHh
Q 021632 257 SSSSYVKEKSAQVTLESCFQSFEKIKLK 284 (310)
Q Consensus 257 ~s~sksk~~~~~v~~~~cfq~~~k~k~~ 284 (310)
+.+. .+.+++|+| +-|- ++.|.++
T Consensus 448 ~~~~--~~~~~~Vtl-s~eE-y~~L~~k 471 (522)
T PF05701_consen 448 RASD--SESSSKVTL-SLEE-YESLSKK 471 (522)
T ss_pred cccc--cCCCCCeee-cHHH-HHHHHHH
Confidence 2222 126677887 4344 5556544
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.59 E-value=9.9 Score=32.78 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHH
Q 021632 110 LVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMR 188 (310)
Q Consensus 110 lvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmk 188 (310)
+..++...+-....+.+|+.++++..++....+.-++.....+. +.....+-++.++.+..+.+..|..-+.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR-------ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666677777777777666666665555555444 4444555556666666666555555555
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=90.34 E-value=22 Score=37.37 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQ 240 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~ 240 (310)
++..++.++..++.....+-+++...+.
T Consensus 818 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 845 (1179)
T TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEE 845 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333333333
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.34 E-value=18 Score=33.38 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=54.2
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEEN 177 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEn 177 (310)
-.-+|++..+....-++.+.+..++..+.+++.+......-+..-+..|..+.+..--.++.|.-++.++.+|.
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 45677888888888899999999998888888777666666666666666666665555666666666666643
No 13
>PRK09039 hypothetical protein; Validated
Probab=89.01 E-value=14 Score=36.00 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=25.4
Q ss_pred hhhHhhhhHHHHHHH-------HHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 206 RVCILSQKIEDLQEQ-------IYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 206 rvc~l~rKIe~Lq~q-------Iy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
.|=.|.+-|+.|++| |..+|.+.++...++...+.++...+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554 55566777777777777666655543
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=88.94 E-value=30 Score=36.65 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=5.8
Q ss_pred HHHHHHHHHhh
Q 021632 42 NGYITLLDRCR 52 (310)
Q Consensus 42 r~YraLAeRYd 52 (310)
..|+.++++|.
T Consensus 204 ~~~~e~~~~~~ 214 (1164)
T TIGR02169 204 RREREKAERYQ 214 (1164)
T ss_pred HHHHHHHHHHH
Confidence 34555555553
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.65 E-value=23 Score=35.01 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 212 QKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 212 rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
+++..|++.|-.||.++.+..+.+.+.+.+.+..
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 4677888888888888887777776666555443
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.12 E-value=44 Score=35.36 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLK-------SLMELLESERMILVNENVKLGYQVSAVMEENKGL 180 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk-------~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~ 180 (310)
+|........-++..|..++.+++..++....+.+-|+ ...+.|..|++.|..+++.+.-++..+.++++.+
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556666677777777766544433333 3445566666666666666666666666665543
No 17
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.99 E-value=23 Score=31.42 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-hhHHHHHHHH
Q 021632 122 EILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG-LASEAMFMRR 189 (310)
Q Consensus 122 d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~-~asEa~fmkr 189 (310)
.+|...|-+|+..+.++..-+.-....-..|+-+...+..+...+.-++-.++.-..+ ||.++.--|.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~ 94 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKA 94 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566677777777777666666777777777777888888888888777665443 6666665555
No 18
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.82 E-value=12 Score=38.98 Aligned_cols=12 Identities=67% Similarity=0.830 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGL 224 (310)
Q Consensus 213 KIe~Lq~qIy~l 224 (310)
+|.+||.|++.|
T Consensus 436 ~I~dLqEQlrDl 447 (493)
T KOG0804|consen 436 KITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHhH
Confidence 666666666654
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.37 E-value=35 Score=32.62 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~ 244 (310)
++..|+.+...++....+..++......++.+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666555555555544
No 20
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.80 E-value=41 Score=32.03 Aligned_cols=124 Identities=23% Similarity=0.249 Sum_probs=85.0
Q ss_pred HhhcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHH---------HHHHHHHHHHHHHHhhhhhhhhhhhh
Q 021632 102 AASANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLK---------SLMELLESERMILVNENVKLGYQVSA 172 (310)
Q Consensus 102 ~~~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk---------~ll~vLesEr~vll~Ena~Lg~~~s~ 172 (310)
.+....+.+--.+++...+.+.+..+++..+..+++...++.-.. .-..-|..|..++-...+.|.+.++.
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566677777888888888889999888888888876665444 33456777777788888889999999
Q ss_pred HHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc--chhhhHhhhhHHHHHHHHHHHH
Q 021632 173 VMEENKGLASEAMFMRRKASELAKCVLRMRE--DYRVCILSQKIEDLQEQIYGLE 225 (310)
Q Consensus 173 ~~eEnk~~asEa~fmkr~a~ELArcvlkmre--dhrvc~l~rKIe~Lq~qIy~lE 225 (310)
++++-.++..+..-++.+-..+=+++..-+. +-.+--..++...+..|+..|.
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888755555555555444 2233333333444444444443
No 21
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=83.61 E-value=14 Score=31.63 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=54.5
Q ss_pred HhhcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 102 AASANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 102 ~~~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
.....++++..+++.+.=+-+.|.+-|=-++.--.+-..+|.=|..-+...+.|+...+.|.-.|.-+|..+..+
T Consensus 66 ~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 66 EFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778899999999999999999988766554444456666666677777777777777776766666665554
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.16 E-value=17 Score=34.96 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=55.7
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHH
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASE 183 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asE 183 (310)
..+++++..++-..-.|...+..||..+|+...+...+++-++.-.+.|+.+......+.-.+-..+...+++...+..-
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777778888888777777777777777777777776666666666666666666555555444444
Q ss_pred HHHHHH
Q 021632 184 AMFMRR 189 (310)
Q Consensus 184 a~fmkr 189 (310)
..++.+
T Consensus 122 ~~~~~~ 127 (314)
T PF04111_consen 122 YEYASN 127 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.16 E-value=30 Score=29.95 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=14.1
Q ss_pred HhhhhHHHHHHHHHHHHhhcHHHHHHHHHH
Q 021632 209 ILSQKIEDLQEQIYGLEKRNKEYYQMLVNR 238 (310)
Q Consensus 209 ~l~rKIe~Lq~qIy~lE~rnre~yeql~~~ 238 (310)
-+.|||..|+.++-.++.+-++--+.|..+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444433
No 24
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.36 E-value=34 Score=30.09 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=41.9
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 021632 160 VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNRE 239 (310)
Q Consensus 160 l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E 239 (310)
-.++-.|...++.+-.+...+..|+..++..=..|. +.....|++|-.||.+|..+-..|...|
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~----------------k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLD----------------KELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444445555555555555555666655555222222 2445668888888888888888887777
Q ss_pred HHHH
Q 021632 240 QQVK 243 (310)
Q Consensus 240 ~e~~ 243 (310)
.+..
T Consensus 115 ~ek~ 118 (140)
T PF10473_consen 115 QEKV 118 (140)
T ss_pred HHHH
Confidence 7743
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.87 E-value=19 Score=31.82 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 197 CVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 197 cvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
.+--..+.|-..=+ -...|+.++..|+.-|+++-+..+..-.+.-+..
T Consensus 145 ~~e~l~DE~~~L~l--~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 145 ANEILQDELQALQL--QLNMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444433323 3567899999999999999887776665554444
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.77 E-value=32 Score=39.58 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 021632 106 NIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVME 175 (310)
Q Consensus 106 ~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~e 175 (310)
..+.+...+--.+...+.+.+++..|+.+..+..+.|..++.-+..|.++-..+..+.+-|..++..++.
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~ 848 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEA 848 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666677777777777777777777766666666666655555555555554444333
No 27
>PRK09039 hypothetical protein; Validated
Probab=80.64 E-value=59 Score=31.72 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=11.8
Q ss_pred HHHHHhhhhhhhhhhhHHHHH
Q 021632 123 ILVNQVNEMDHVCNESRRKIE 143 (310)
Q Consensus 123 ~l~del~~~er~~~Es~rkie 143 (310)
+|.++|+.++..+.+...+|-
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIA 63 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 355566666666655555443
No 28
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.32 E-value=37 Score=38.66 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=59.5
Q ss_pred hhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc---chhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 161 NENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMRE---DYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 161 ~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmre---dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
+|.-.|...++.+..|+-+.-+|+..|++-++||+-++-+|-. .|+--+- -+.-+-.++-.|++.|+.+-+--.=
T Consensus 205 ~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlm--Ds~fykdRveelkedN~vLleekeM 282 (1195)
T KOG4643|consen 205 NELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLM--DSDFYKDRVEELKEDNRVLLEEKEM 282 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhh--hhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444555566667777777888899999999999988887765 5665433 3444678888888888888776555
Q ss_pred HHHHHHhhh
Q 021632 238 REQQVKEYE 246 (310)
Q Consensus 238 ~E~e~~~~~ 246 (310)
.+.|+..+-
T Consensus 283 LeeQLq~lr 291 (1195)
T KOG4643|consen 283 LEEQLQKLR 291 (1195)
T ss_pred HHHHHHHHH
Confidence 666665554
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.64 E-value=55 Score=32.37 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLV 236 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~ 236 (310)
++..|..+|..|+..-+++-+++.
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=79.20 E-value=75 Score=33.61 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=33.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhh
Q 021632 133 HVCNESRRKIELLKSLMELLESERMIL-------VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMR 202 (310)
Q Consensus 133 r~~~Es~rkieLlk~ll~vLesEr~vl-------l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmr 202 (310)
+.+.+...+++-+..-+..|+.|...+ ..+.-.+...+..++++...+..+..-++.....+-+.+-.++
T Consensus 370 ~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555566655543 2233344455555555555544444444443334444444444
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=78.32 E-value=14 Score=42.46 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=53.1
Q ss_pred hHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc--chhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 172 AVMEENKGLASEAMFMRRKASELAKCVLRMRE--DYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 172 ~~~eEnk~~asEa~fmkr~a~ELArcvlkmre--dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
.+.+.+|++.....-+|-...+|-| +.+. +|..-...+|.+.+.+++..|+..++.++++|........
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888777777776 3333 6666666779999999999999999999998887744443
No 32
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.13 E-value=72 Score=34.10 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhhHHHHHHh-----------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHh
Q 021632 109 DLVAELVAKNVESEILVNQV-----------NEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEEN 177 (310)
Q Consensus 109 elvaelVa~nve~d~l~del-----------~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEn 177 (310)
.++.+.+..-++++.++-|- +...+++-+.-.++-...+++..+--|-.++-+||-+|-..+..++.+.
T Consensus 170 ~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 170 PLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI 249 (596)
T ss_pred ChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555555555555554431 1222333333334444444444444455555555555555555555554
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 178 KGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 178 k~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
|.++.| -.||.-.+-.|-+.||+ |++....+|.++-||-+.+..+|.|.+..-
T Consensus 250 k~~~~E-------keel~~~Lq~~~da~~q---------l~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 250 KYLRHE-------KEELDEHLQAYKDAQRQ---------LTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHH-------HHHHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 433322 22444444455555554 688899999999999999999999998764
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=77.18 E-value=1e+02 Score=32.58 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 214 IEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 214 Ie~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
+..|+..+..|+.++....+.+.....++.+.
T Consensus 608 ~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 608 IERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555556665555555543
No 34
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.14 E-value=1.1e+02 Score=34.32 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHhhc
Q 021632 212 QKIEDLQEQIYGLEKRN 228 (310)
Q Consensus 212 rKIe~Lq~qIy~lE~rn 228 (310)
++|..|+.+|..|..=|
T Consensus 949 ~~i~~le~~i~~lg~VN 965 (1163)
T COG1196 949 REIERLEEEIEALGPVN 965 (1163)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 34444444444444333
No 35
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.64 E-value=64 Score=35.76 Aligned_cols=94 Identities=23% Similarity=0.205 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh---hHHHH------------HHHHhhHHHHHHHHHhhc--
Q 021632 141 KIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGL---ASEAM------------FMRRKASELAKCVLRMRE-- 203 (310)
Q Consensus 141 kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~---asEa~------------fmkr~a~ELArcvlkmre-- 203 (310)
.-.++.+-+..+-+|...+-.+|+++-..+.++++.|.+. .-+|. -+|.+-..|+.-|-..|.
T Consensus 517 ~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 517 TEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTL 596 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666777777666666665554431 11111 122222345555544443
Q ss_pred -------chhhhHhhhhHHHHHHHHHHHHhhcHHHHHH
Q 021632 204 -------DYRVCILSQKIEDLQEQIYGLEKRNKEYYQM 234 (310)
Q Consensus 204 -------dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeq 234 (310)
-+|-=++---|++||.+..++|.|+.++-++
T Consensus 597 ~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 597 SKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1233344447889999998999888776543
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.71 E-value=58 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
+.+.|+.+|..+...-.++-.++..++...+
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666665554443
No 37
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.36 E-value=0.91 Score=47.34 Aligned_cols=68 Identities=26% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 175 EENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 175 eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
++++++--|.--+|.+|..+.|+...+ +.||.-+. -+.+|..|+..|+++|..|-++....|.+.+..
T Consensus 291 ~~a~~LrDElD~lR~~a~r~~klE~~v-e~YKkKLe--d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~ 358 (713)
T PF05622_consen 291 REARALRDELDELREKADRADKLENEV-EKYKKKLE--DLEDLKRQVKELEEDNAVLLETKAMLEEELKKA 358 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556677777888888777766544 47888766 588899999999999999999999999998654
No 38
>PRK11637 AmiB activator; Provisional
Probab=74.51 E-value=72 Score=31.37 Aligned_cols=58 Identities=3% Similarity=-0.056 Sum_probs=25.4
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 122 EILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 122 d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
+.+.+++...+++..+...+|.-+++-+..++.+...+-.+...+.-+++.+..+.+.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~ 100 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQ 100 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544454444444444444444444444444444444444444433333333
No 39
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.51 E-value=80 Score=36.18 Aligned_cols=52 Identities=27% Similarity=0.442 Sum_probs=39.1
Q ss_pred HHHHhhHHHHHHHHHhhc---chhhhH-----hhhhHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 186 FMRRKASELAKCVLRMRE---DYRVCI-----LSQKIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 186 fmkr~a~ELArcvlkmre---dhrvc~-----l~rKIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
.+-+++-|+.|+...+.+ +|+.|- ++.|.+-|.+-...+|++|.-+-.|+-.
T Consensus 496 ~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~ 555 (1195)
T KOG4643|consen 496 SLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQS 555 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345677889998887776 898885 5677788888888888888777766544
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.51 E-value=1.1e+02 Score=34.11 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 021632 210 LSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQ 241 (310)
Q Consensus 210 l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e 241 (310)
+.+.+..++..++.++..-......+.+.+..
T Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 465 LERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444443
No 41
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.33 E-value=52 Score=26.95 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=31.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhH
Q 021632 131 MDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLAS 182 (310)
Q Consensus 131 ~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~as 182 (310)
.|...+.+-.+|.||+--++.|+.....|-.|+-.+-..=..+..+|..+-.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3677777777888888777777766666555554443333444444444333
No 42
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.08 E-value=1.8e+02 Score=35.15 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH
Q 021632 108 DDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFM 187 (310)
Q Consensus 108 delvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fm 187 (310)
.+++.++-.+.-++..+...++.++.........++.+-+.+-...+..+--+-+++.+--.++.+-+++..+..|+.-+
T Consensus 1000 ~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~L 1079 (1822)
T KOG4674|consen 1000 LDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKL 1079 (1822)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444443333333333344444555555556677778888888888888888888888
Q ss_pred HHhhHHHHHHHHHhhcch--hhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 021632 188 RRKASELAKCVLRMREDY--RVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 188 kr~a~ELArcvlkmredh--rvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~ 244 (310)
|....-..-....--.+. +.=+|-+-+..+..+|.+|+.-|+-+++|++..=.....
T Consensus 1080 k~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~ 1138 (1822)
T KOG4674|consen 1080 KKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV 1138 (1822)
T ss_pred HhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 765443333333332322 444566677888999999999999999999887666543
No 43
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=70.72 E-value=60 Score=28.95 Aligned_cols=84 Identities=23% Similarity=0.189 Sum_probs=59.8
Q ss_pred HHhhcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 021632 101 AAASANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGL 180 (310)
Q Consensus 101 ~~~~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~ 180 (310)
..+.+.-|.+.++--..+++-..|.....+.+.++ .++-++-+..-..|..--+++-+|+-.|..+++.++++|+.|
T Consensus 32 V~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~---~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 32 VRVLELLESLASRNQEHEVELELLREDNEQLETQY---EREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888775444444 555555554444444334777888889999999999999987
Q ss_pred hHHHHHH
Q 021632 181 ASEAMFM 187 (310)
Q Consensus 181 asEa~fm 187 (310)
..-+.++
T Consensus 109 ~~~~~~~ 115 (158)
T PF09744_consen 109 ELKLKNL 115 (158)
T ss_pred HHHhhhh
Confidence 6555443
No 44
>PF15294 Leu_zip: Leucine zipper
Probab=70.52 E-value=23 Score=34.45 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=60.0
Q ss_pred HHHHhhhhHHHHHHhhhhhhhhhhhHH--HHHH----HHHH-----HHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhH
Q 021632 114 LVAKNVESEILVNQVNEMDHVCNESRR--KIEL----LKSL-----MELLESERMILVNENVKLGYQVSAVMEENKGLAS 182 (310)
Q Consensus 114 lVa~nve~d~l~del~~~er~~~Es~r--kieL----lk~l-----l~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~as 182 (310)
....-+|...|++++.++|+..--+.. -++. |..+ .+.|..|+..|-+||..|-.++..++..+-.+..
T Consensus 81 ~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~ 160 (278)
T PF15294_consen 81 TDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALD 160 (278)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999888776533221 0011 1222 3446777777777777777766666655555555
Q ss_pred HHHHHHHhhHHHHHHHHHhhcchhh--hHhhhhHHHHHHHHHHHH
Q 021632 183 EAMFMRRKASELAKCVLRMREDYRV--CILSQKIEDLQEQIYGLE 225 (310)
Q Consensus 183 Ea~fmkr~a~ELArcvlkmredhrv--c~l~rKIe~Lq~qIy~lE 225 (310)
|-.-+.+...+|-. +.-+..++. .+-...|.+|++++.++.
T Consensus 161 Ek~kl~~~L~~lq~--~~~~~~~k~~~~~~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 161 EKSKLEAQLKELQD--EQGDQKGKKDLSFKAQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHH--HHHhhhccccccccccchhhHHHHHHHHH
Confidence 55555553323222 111112221 344556777787777774
No 45
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.27 E-value=64 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=23.9
Q ss_pred HhhhhHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 209 ILSQKIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 209 ~l~rKIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
++-.-|..++.+|-.|..-|+-+++||+.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33446889999999999999999999864
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.14 E-value=88 Score=28.58 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=33.7
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHH
Q 021632 159 LVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQML 235 (310)
Q Consensus 159 ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql 235 (310)
|=+.+....-++..+....+.+..-+--.=++..|.+|-+..+..+....-. +++.++.+|..||..-+..-..|
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe--R~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE--RAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhchhHHHHHHHHHHHHHHH
Confidence 3344444555555555555554444444444445555555444443322222 34444444444444444333333
No 47
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.50 E-value=53 Score=32.05 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHH
Q 021632 107 IDDLVAELVAKNVESEILVNQVNEMDH--VCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEA 184 (310)
Q Consensus 107 idelvaelVa~nve~d~l~del~~~er--~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa 184 (310)
++-+-.++|-+-+..-+.+-=|.-.-+ .+-+-.+..+=+|.-++.+-.|+..|+.||-.|...+..+++..|.+.-
T Consensus 100 vEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~-- 177 (290)
T COG4026 100 VEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV-- 177 (290)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333334455444444444444421111 1112233334455556777789999999999999999999888666443
Q ss_pred HHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 185 MFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 185 ~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
|++++--+. --|.+.+|.|+.|-.++.+.++-
T Consensus 178 --------E~s~LeE~~-------------~~l~~ev~~L~~r~~ELe~~~El 209 (290)
T COG4026 178 --------ENSRLEEML-------------KKLPGEVYDLKKRWDELEPGVEL 209 (290)
T ss_pred --------HHHHHHHHH-------------HhchhHHHHHHHHHHHhcccccc
Confidence 555543222 12345566666666665554433
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.12 E-value=1.2e+02 Score=29.63 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH-------HHHhhhhhHHHHHHHHhhHHHHH--------HHHHhhc-c
Q 021632 141 KIELLKSLMELLESERMILVNENVKLGYQVSAV-------MEENKGLASEAMFMRRKASELAK--------CVLRMRE-D 204 (310)
Q Consensus 141 kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~-------~eEnk~~asEa~fmkr~a~ELAr--------cvlkmre-d 204 (310)
+.++++.+..+|+...+.+-.+...|.-.++.+ .+....+-.|+..+++...++.. +-.+..+ +
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~ 217 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH
Confidence 556666666666666666555555554444333 23333366666666665555433 2223333 2
Q ss_pred hhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 205 YRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 205 hrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
..+=..-.+++.+|.|...++.+-....++......++.+..
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333447777787777777777777777776666665543
No 49
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.95 E-value=1.6e+02 Score=31.24 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
+|..++.+|..++.--+.--+...+...+.+
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776554444444444444444
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=68.18 E-value=99 Score=32.85 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 145 LKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 145 lk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
|.....+|+.|...|-.++.+|...+....+++..+..+..-+..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555566666666666665555555444444333
No 51
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.56 E-value=87 Score=30.98 Aligned_cols=84 Identities=26% Similarity=0.266 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHH
Q 021632 107 IDDLVAELVAKNVESEILVNQVNEMDHVCNESRR---KIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASE 183 (310)
Q Consensus 107 idelvaelVa~nve~d~l~del~~~er~~~Es~r---kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asE 183 (310)
+.+.|-++..+|.+...|-+||. ++..++.+ .|-=|-+-+.-|+.---.+--||..|+-.+.+..+-...|++|
T Consensus 201 v~dcv~QL~~An~qia~LseELa---~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 201 VLDCVKQLSEANQQIASLSEELA---RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHhhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33778889999999999999995 66655544 2222222222222222223445555555555554444445555
Q ss_pred HHHHHHhhHH
Q 021632 184 AMFMRRKASE 193 (310)
Q Consensus 184 a~fmkr~a~E 193 (310)
+.-++-|..|
T Consensus 278 L~elqdkY~E 287 (306)
T PF04849_consen 278 LQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 52
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=67.50 E-value=13 Score=36.51 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~ 244 (310)
+.|+|.+++.+||.||.++-+|....|-|+..
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999853
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.48 E-value=1.2e+02 Score=29.01 Aligned_cols=91 Identities=26% Similarity=0.287 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH--HHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHH
Q 021632 141 KIELLKSLMELLESERMILVNENVKLGYQVSAV--MEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQ 218 (310)
Q Consensus 141 kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~--~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq 218 (310)
+.+=++..+-.+++|...+-....+..++++++ +.+..+|..|.--++++...|-.-+....+...- +.-+|++|+
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~--l~~~i~~l~ 130 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK--LEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 333344555555666555555556666666443 3445557788888888666555544444432211 233566666
Q ss_pred HHHHHHHhhcHHHHH
Q 021632 219 EQIYGLEKRNKEYYQ 233 (310)
Q Consensus 219 ~qIy~lE~rnre~ye 233 (310)
.+|-.+|....++-.
T Consensus 131 ~~~~~~e~~~~e~~~ 145 (239)
T COG1579 131 ERLERLEKNLAEAEA 145 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666654444433
No 54
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=65.61 E-value=65 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
+|..+++||..||.-..++=+-.-+.|..+
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888877666555444444443
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.82 E-value=3.1e+02 Score=33.47 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHH
Q 021632 212 QKIEDLQEQIYGLE 225 (310)
Q Consensus 212 rKIe~Lq~qIy~lE 225 (310)
++|..||++|..|+
T Consensus 1097 k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1097 KQIKELEARIKELE 1110 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555443
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.60 E-value=93 Score=26.82 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=13.0
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021632 127 QVNEMDHVCNESRRKIELLKSLMELLESERMIL 159 (310)
Q Consensus 127 el~~~er~~~Es~rkieLlk~ll~vLesEr~vl 159 (310)
++.....++++...++.=+...+..+.++-..+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443333334444444443333
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.93 E-value=1.8e+02 Score=34.30 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 021632 107 IDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGL 180 (310)
Q Consensus 107 idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~ 180 (310)
.+.|...+.-+.-+++.+..++.+.+.+++.....+..+++.+..++.+...+-.+--.||+.+....|+-..+
T Consensus 987 ~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~ 1060 (1486)
T PRK04863 987 NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARA 1060 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34677777777888888999998888888888888888888888888888888888999999999887775553
No 58
>PRK03918 chromosome segregation protein; Provisional
Probab=61.50 E-value=2.2e+02 Score=30.04 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=5.0
Q ss_pred cCC-CCCC
Q 021632 304 CGL-PSCS 310 (310)
Q Consensus 304 cg~-p~c~ 310 (310)
||. |+|.
T Consensus 435 ~~~Cp~c~ 442 (880)
T PRK03918 435 KGKCPVCG 442 (880)
T ss_pred CCCCCCCC
Confidence 777 8883
No 59
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.36 E-value=2.9e+02 Score=31.45 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=53.8
Q ss_pred cChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhHHHHhhhhh
Q 021632 105 ANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMIL---VNENVKLGYQVSAVMEENKGLA 181 (310)
Q Consensus 105 ~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vl---l~Ena~Lg~~~s~~~eEnk~~a 181 (310)
..+++|..++-+..-+.+.+..++...-.......++|.=|+.-++.+..++..+ +..-..|.-.+..+.+++..+.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~ 901 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777766665444444444455555555555566665554 3344445555555555555555
Q ss_pred HHHHHHHHhhHHHHHHHHHhhc
Q 021632 182 SEAMFMRRKASELAKCVLRMRE 203 (310)
Q Consensus 182 sEa~fmkr~a~ELArcvlkmre 203 (310)
.+..-++.+-..|..-+.+...
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~ 923 (1311)
T TIGR00606 902 REIKDAKEQDSPLETFLEKDQQ 923 (1311)
T ss_pred HHHHHHHHHhhhhhHHHHHHHH
Confidence 5555555544444443333333
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.15 E-value=1.7e+02 Score=28.59 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=61.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-hhHHHHHHHHhhHHHHHHHHH
Q 021632 122 EILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG-LASEAMFMRRKASELAKCVLR 200 (310)
Q Consensus 122 d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~-~asEa~fmkr~a~ELArcvlk 200 (310)
+.|...+..|....+.-...++++.+++..|..-...|..|-..|--..+ +... -..|+.-+|.+-.++-.-+..
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~----e~~~~d~~eL~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED----ELEDCDPTELDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555677777777777777777766555544332222 2111 244555566533333222333
Q ss_pred hhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 201 MREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 201 mredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
++.+. --+-.....|...|......-.++..++...|...+
T Consensus 223 ~~~~l--~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 223 KVKKL--EELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 112234556666666666666666666666666543
No 61
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.37 E-value=31 Score=32.49 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 021632 110 LVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVS 171 (310)
Q Consensus 110 lvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s 171 (310)
++++....+-+-..|.+|+......+..+..+..-+++=.+-+..|-+.|++||.+|+-++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 77777888888899999999888889999899999999999999999999999999988775
No 62
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.61 E-value=1.9e+02 Score=32.92 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=60.8
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc
Q 021632 124 LVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMRE 203 (310)
Q Consensus 124 l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmre 203 (310)
++.-++..|-++-+-.++|.+|+--+--||+|+-.|-. .+++++++.|+..+|+-...-++-+|-.-+..+++
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~-------ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD-------TIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 33344444555555567788888777788888776543 45677888888999999999988888877777766
Q ss_pred c--------hhhhHhhhhHHHHHHHHH
Q 021632 204 D--------YRVCILSQKIEDLQEQIY 222 (310)
Q Consensus 204 d--------hrvc~l~rKIe~Lq~qIy 222 (310)
| |..|+. |-++..|..
T Consensus 163 eIf~~~~~L~nk~~~---lt~~~~q~~ 186 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEE---LNEFNMEFQ 186 (1265)
T ss_pred HHHHHHHHHhhhhhH---HhHHHHHHH
Confidence 3 455554 555555543
No 63
>PLN02939 transferase, transferring glycosyl groups
Probab=58.17 E-value=97 Score=35.03 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=35.6
Q ss_pred hhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhc
Q 021632 166 LGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRN 228 (310)
Q Consensus 166 Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rn 228 (310)
|+--++.+-+||--+-..+-|+|.+-.+.| ..+-++-+|.+--.-|++-+.+||.+-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVA------ETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777778877433332 335566666555556666666666553
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=57.56 E-value=1.7e+02 Score=27.46 Aligned_cols=92 Identities=25% Similarity=0.305 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhc
Q 021632 149 MELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRN 228 (310)
Q Consensus 149 l~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rn 228 (310)
|+-|+.=--.|.+||+.|--.+-++.+.|..|+.|+-.+|+.+.-+=..+- +-=++.--+++|..-.+.||+-|
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~------~aK~l~eEledLk~~~~~lEE~~ 83 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ------KAKALEEELEDLKTLAKSLEEEN 83 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566777777777777777777777777777764433322221 11122334667777777777777
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 021632 229 KEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 229 re~yeql~~~E~e~~~~~ 246 (310)
+-++-|.-..|.|..-.+
T Consensus 84 ~~L~aq~rqlEkE~q~L~ 101 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLV 101 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766666655444
No 65
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.46 E-value=1.6e+02 Score=32.41 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 111 VAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 111 vaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
...+.-...+.+.+..+|.+.|..+.+...+++.++++-..++.+....-.-+-.|..++..++.|
T Consensus 609 e~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 609 EMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 333334444555555555555555555555555555555555555555544444444444433333
No 66
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.32 E-value=2.3e+02 Score=31.78 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
++..+|-+....|+-|.-+---|-++++||++.
T Consensus 509 ~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 509 NVKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 455566666677777777777777777887765
No 67
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.29 E-value=1.4e+02 Score=29.73 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhhhhhhHHHHH
Q 021632 123 ILVNQVNEMDHVCNESRRKIE 143 (310)
Q Consensus 123 ~l~del~~~er~~~Es~rkie 143 (310)
-.++|+ +.++|.+++||
T Consensus 31 ~~reEl----~EFQegSrE~E 47 (333)
T KOG1853|consen 31 QMREEL----NEFQEGSREIE 47 (333)
T ss_pred HHHHHH----HHHhhhhHHHH
Confidence 345666 56777777766
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.18 E-value=94 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=13.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Q 021632 131 MDHVCNESRRKIELLKSLMELLESE 155 (310)
Q Consensus 131 ~er~~~Es~rkieLlk~ll~vLesE 155 (310)
.|.+.+.+-.+|.+|+--++.|+.+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555665555544444443
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.89 E-value=2.8e+02 Score=29.59 Aligned_cols=82 Identities=17% Similarity=0.093 Sum_probs=48.6
Q ss_pred HHhhhhhhhhhhhHHHHHHHH--------HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHH
Q 021632 126 NQVNEMDHVCNESRRKIELLK--------SLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKC 197 (310)
Q Consensus 126 del~~~er~~~Es~rkieLlk--------~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArc 197 (310)
+.|--+|.+.......|.+++ .+=..-+.|.-.+..-...-+-..+.++-+.+.+.-|..-+|++-.+..+.
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344334444444456777776 344556666666433333333455556666666777777788877777777
Q ss_pred HHHhhcchhh
Q 021632 198 VLRMREDYRV 207 (310)
Q Consensus 198 vlkmredhrv 207 (310)
+.--|+++++
T Consensus 136 ~~~~re~~~~ 145 (546)
T KOG0977|consen 136 RRGAREKLDD 145 (546)
T ss_pred HhhhHHHHHH
Confidence 7777776653
No 70
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.33 E-value=83 Score=24.74 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021632 139 RRKIELLKSLMELLESERMILVNENVKLG 167 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vll~Ena~Lg 167 (310)
+.||.=.=+-+..|+.|...|-++|..|.
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444445555555555555555544
No 71
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.06 E-value=4.9e+02 Score=31.95 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMR 188 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmk 188 (310)
++++++.++-.+---+..++..+.+.+.+....++=+......|..|..-|..-+..+|-++..++...+.+..|.--|+
T Consensus 1453 ~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ 1532 (1930)
T KOG0161|consen 1453 KLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQ 1532 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443344444333333333333333444444444555555556666667777777777776666666666
Q ss_pred HhhHHHHHHHHHhhc----chhhhHhhhhH-----HHHHHHHHHHHhhcHHHHHHHHHHHH
Q 021632 189 RKASELAKCVLRMRE----DYRVCILSQKI-----EDLQEQIYGLEKRNKEYYQMLVNREQ 240 (310)
Q Consensus 189 r~a~ELArcvlkmre----dhrvc~l~rKI-----e~Lq~qIy~lE~rnre~yeql~~~E~ 240 (310)
..-.|+ ....+. ++|.|+...++ ..|+.+-.+.|...+.+--++.....
T Consensus 1533 ~aLeEl---E~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~ 1590 (1930)
T KOG0161|consen 1533 AALEEL---EAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQA 1590 (1930)
T ss_pred HHHHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 522222 222221 45555443322 24555555556555555555554333
No 72
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=53.49 E-value=1.4e+02 Score=25.47 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhH
Q 021632 113 ELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKAS 192 (310)
Q Consensus 113 elVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ 192 (310)
+||..-++...|+++. |-..=|...+|==+.+.|-.|+..++......+.++..+..+++.-..++.|...+++.+-
T Consensus 11 eLVDLQIe~~rL~Eq~---EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~ 87 (108)
T PF14739_consen 11 ELVDLQIETNRLREQH---EAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNYQ 87 (108)
T ss_pred HHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666655 2333333344444557888888888888999999999999999999999999998888443
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.92 E-value=1.5e+02 Score=25.43 Aligned_cols=76 Identities=28% Similarity=0.363 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcch--hhhHhhhhH--
Q 021632 139 RRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDY--RVCILSQKI-- 214 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredh--rvc~l~rKI-- 214 (310)
+-++..++.-+.-|+.+|+.+-+|.++|-.... +.++...+..-+++ ++.. +..+| --=|+|.|.
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e----~~~~~~~~~~~L~~---el~~----l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENE----ELRALKKEVEELEQ---ELEE----LQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHhcchHHH
Confidence 567778889999999999999999988655443 33334444555555 3332 23334 223555554
Q ss_pred -HHHHHHHHHHH
Q 021632 215 -EDLQEQIYGLE 225 (310)
Q Consensus 215 -e~Lq~qIy~lE 225 (310)
+.|++-|.++-
T Consensus 98 veEL~~Dv~DlK 109 (120)
T PF12325_consen 98 VEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHH
Confidence 45666666653
No 74
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.37 E-value=3.1e+02 Score=29.01 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=53.4
Q ss_pred hhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 021632 162 ENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQ 241 (310)
Q Consensus 162 Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e 241 (310)
+|-++..++..+.+||-++-+++.-+|--|.+||- ++||-. ..|++|.-||-..++..+...+.|.+.+.+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklae------e~qr~s---d~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAE------EDQRSS---DLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467789999999999998888888887766663 456542 358888888888887777777777765544
Q ss_pred H
Q 021632 242 V 242 (310)
Q Consensus 242 ~ 242 (310)
.
T Consensus 369 k 369 (502)
T KOG0982|consen 369 K 369 (502)
T ss_pred h
Confidence 3
No 75
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.35 E-value=3.4e+02 Score=29.41 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=36.0
Q ss_pred hhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHH
Q 021632 164 VKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQML 235 (310)
Q Consensus 164 a~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql 235 (310)
.-|+-..+...+++..+-.++..+|++-.++..-+........-|+- ....++..|+..+..|++..
T Consensus 230 ~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 230 KPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALK-----ESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555556666666666666666666666654444433 22233555555555555554
No 76
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.34 E-value=3.4e+02 Score=29.53 Aligned_cols=65 Identities=32% Similarity=0.283 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc
Q 021632 139 RRKIELLKSLMELLESERMI----LVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMRE 203 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~v----ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmre 203 (310)
+++|++|+.--.+=|-|+.- --.||-+|--+|++++-+.++..+-..-+|..|.-||--.++.+-
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds 380 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDS 380 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 58999999766666655544 477999999999999999999999999999999999998888776
No 77
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.05 E-value=48 Score=28.14 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhH
Q 021632 152 LESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKAS 192 (310)
Q Consensus 152 LesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ 192 (310)
|+.--..++.+.+.|-..+..++|||..|..|--.+|++-.
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555666666666677777777777333
No 78
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.99 E-value=49 Score=27.72 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=18.5
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHH
Q 021632 159 LVNENVKLGYQVSAVMEENKGLASEAMFMRRKASE 193 (310)
Q Consensus 159 ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~E 193 (310)
++.+...|-..+..++|||..|-.|--.||.+..+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555666666666666663333
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.36 E-value=1.6e+02 Score=25.45 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=6.5
Q ss_pred hhhhhhhhHHHHhh
Q 021632 165 KLGYQVSAVMEENK 178 (310)
Q Consensus 165 ~Lg~~~s~~~eEnk 178 (310)
.|.-++..+.++..
T Consensus 77 ~l~rriq~LEeele 90 (143)
T PF12718_consen 77 QLNRRIQLLEEELE 90 (143)
T ss_pred HHHhhHHHHHHHHH
Confidence 34445555554433
No 80
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=50.55 E-value=1.4e+02 Score=31.03 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhhhHH--HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHH
Q 021632 109 DLVAELVAKNVESEI--LVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMF 186 (310)
Q Consensus 109 elvaelVa~nve~d~--l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~f 186 (310)
.-.|++...||.|++ ++.++.+.++++.|..+|+.=.+.....++.+-..... .+|-+-..+..|..++..++--
T Consensus 112 ~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~---~lGI~G~nir~ELl~l~~~LP~ 188 (507)
T PF05600_consen 112 AEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACK---QLGIKGENIREELLELVKELPS 188 (507)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HhCCccchhHHHHHHHHHhhHH
Confidence 346888999999886 88999999999999998777666666666666665433 3455555567777777777777
Q ss_pred HHHhhHHHHHHHHHhhcchhhhHh
Q 021632 187 MRRKASELAKCVLRMREDYRVCIL 210 (310)
Q Consensus 187 mkr~a~ELArcvlkmredhrvc~l 210 (310)
+-.++++..+-+....+=|+.|+-
T Consensus 189 ~~~~i~~~i~~l~~aie~Y~~f~~ 212 (507)
T PF05600_consen 189 LFDEIVEAISDLQEAIEYYQAFVE 212 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887765543
No 81
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.28 E-value=2e+02 Score=26.09 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=51.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-hhHHHHHHHHhhHHHHHHHHHhhcchh--
Q 021632 130 EMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG-LASEAMFMRRKASELAKCVLRMREDYR-- 206 (310)
Q Consensus 130 ~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~-~asEa~fmkr~a~ELArcvlkmredhr-- 206 (310)
+|+..+.++.+.+-=+...-..|+-+...+-.....+.-++-.++....+ ||.+|+--|....+.+.-+-..-+..+
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~ 114 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEET 114 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333322222223333444444556666677777666664444 788887766643333332222222222
Q ss_pred hhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 021632 207 VCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQ 241 (310)
Q Consensus 207 vc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e 241 (310)
+==+.++|..|+.+|..+..+-..+.-......+.
T Consensus 115 v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 115 LAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345555555555544443333333344443
No 82
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=50.11 E-value=1.2e+02 Score=23.69 Aligned_cols=26 Identities=46% Similarity=0.767 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021632 139 RRKIELLKSLMELLESERMILVNENV 164 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vll~Ena 164 (310)
...++++..|+++|+.|+..+..-+.
T Consensus 11 ~~~~~~~~~L~~ll~~e~~~l~~~d~ 36 (143)
T PF05130_consen 11 EEQIELLQELLELLEEEREALISGDI 36 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 67889999999999999999865543
No 83
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=49.85 E-value=3.1e+02 Score=31.64 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=39.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH-------HhhhhhHHHHHHHHhhHHHHHHHHHh
Q 021632 129 NEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVME-------ENKGLASEAMFMRRKASELAKCVLRM 201 (310)
Q Consensus 129 ~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~e-------Enk~~asEa~fmkr~a~ELArcvlkm 201 (310)
...+++++...-+|...+.-+..|..+-+-....|...--+++..+. |...-.+|...+|....-+.|-+.+.
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~ 356 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDL 356 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666555555555555544443333 33334555555555444444444444
Q ss_pred hc
Q 021632 202 RE 203 (310)
Q Consensus 202 re 203 (310)
.+
T Consensus 357 ~~ 358 (1074)
T KOG0250|consen 357 KE 358 (1074)
T ss_pred HH
Confidence 33
No 84
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.22 E-value=1.8e+02 Score=27.61 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=60.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------hhhhhhhhhhhHHHHhhh---hhHHHHHH-HHhhHHHHHH
Q 021632 131 MDHVCNESRRKIELLKSLMELLESERMILVN---------ENVKLGYQVSAVMEENKG---LASEAMFM-RRKASELAKC 197 (310)
Q Consensus 131 ~er~~~Es~rkieLlk~ll~vLesEr~vll~---------Ena~Lg~~~s~~~eEnk~---~asEa~fm-kr~a~ELArc 197 (310)
.+.++.++..+++=++.|+..||.+-..+-. .++.+..-++...-...+ ++.-..-. --...-|--.
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpI 83 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPI 83 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHH
Confidence 3567777788888999999999988777532 222222111111111000 00000000 0111223344
Q ss_pred HHHhhcchhhh---------HhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhhccCC
Q 021632 198 VLRMREDYRVC---------ILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYENSWSN 251 (310)
Q Consensus 198 vlkmredhrvc---------~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~~~~~~ 251 (310)
|-+-|+++|.- -....|..|+.+|-.|..-|-.+||.+ ++.-|+.+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi--------RylqSY~~ 138 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI--------RYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhCcc
Confidence 55555544332 233468888888888888888888843 56666665
No 85
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.91 E-value=5.7 Score=41.59 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCccccccCCCCCCCCCccccccc
Q 021632 39 DLYNGYITLLDRCRNHKKHHFRNGSSETIITASSSADAESDAESTIS 85 (310)
Q Consensus 39 e~yr~YraLAeRYd~~~~~~~~n~t~~~~~~g~S~~d~dSdaeSsls 85 (310)
+++..--.++++++.+......+..+...-.++++.|+.+.+.+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~s~~ 48 (722)
T PF05557_consen 2 DIESSTTVMMDSFNDSITRSAPNNFIFQRLSTSSESDVSTSASSSLQ 48 (722)
T ss_dssp -----------------------------------------------
T ss_pred CccccchhhhhhhhhhhhhcccccccccccccccCCCcccccccchh
Confidence 34444556777776654332233322222244444344444445443
No 86
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=48.69 E-value=2.6e+02 Score=30.79 Aligned_cols=71 Identities=31% Similarity=0.378 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhh-------hhhhhhhhhHHHHhhhhhHHHHHHHHhh------------------HHHHHHHHHhhc
Q 021632 149 MELLESERMILVNEN-------VKLGYQVSAVMEENKGLASEAMFMRRKA------------------SELAKCVLRMRE 203 (310)
Q Consensus 149 l~vLesEr~vll~En-------a~Lg~~~s~~~eEnk~~asEa~fmkr~a------------------~ELArcvlkmre 203 (310)
|..|-.|++||.+|| .+|.-++..++||.|-+-+||+-.||+| +||||.+. -|-
T Consensus 331 VDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLM-eRN 409 (832)
T KOG2077|consen 331 VDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLM-ERN 409 (832)
T ss_pred HHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHH-HHh
Confidence 567788888887776 4677888888888888888888777765 46776443 355
Q ss_pred chhhhHhhhhHHHHHHHHHHHH
Q 021632 204 DYRVCILSQKIEDLQEQIYGLE 225 (310)
Q Consensus 204 dhrvc~l~rKIe~Lq~qIy~lE 225 (310)
+|+-- +=.||.-|+=-|
T Consensus 410 qYKEr-----LMELqEavrWTE 426 (832)
T KOG2077|consen 410 QYKER-----LMELQEAVRWTE 426 (832)
T ss_pred HHHHH-----HHHHHHHHhHHH
Confidence 66653 336777776655
No 87
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.53 E-value=2.5e+02 Score=30.45 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
.||.+|++|+.=|.--.++-..|+.
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666555554444433
No 88
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.83 E-value=2.5e+02 Score=26.49 Aligned_cols=85 Identities=24% Similarity=0.200 Sum_probs=57.1
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhh
Q 021632 112 AELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKA 191 (310)
Q Consensus 112 aelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a 191 (310)
+++=.+-+++..++++|..-...+..-++-|+=.....+.|..||...++|-.-.-.-++++....+.+.+|-.-++..+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777777777522222222235566666888999999999988888888888888888888777766666644
Q ss_pred HHHHH
Q 021632 192 SELAK 196 (310)
Q Consensus 192 ~ELAr 196 (310)
..+=.
T Consensus 84 ~r~~e 88 (230)
T PF10146_consen 84 QRLYE 88 (230)
T ss_pred HHHHH
Confidence 44333
No 89
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=47.65 E-value=69 Score=33.52 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=33.9
Q ss_pred hhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhh
Q 021632 206 RVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYEN 247 (310)
Q Consensus 206 rvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~~ 247 (310)
||-..+--=..||.||..||..|+-+.+||-+.++.+.+..|
T Consensus 280 rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 280 RVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred hhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 443333344689999999999999999999999999977654
No 90
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.54 E-value=5.1e+02 Score=30.05 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHH
Q 021632 183 EAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVN 237 (310)
Q Consensus 183 Ea~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~ 237 (310)
|..-+++.+.+++.-..++.+.++-+ .++.+.++.++..++.|..+.-..+..
T Consensus 334 eL~el~~ql~~~~~~a~~~~~~~~~a--~~~~e~~~~~~~~~~~r~~~~~~~l~~ 386 (1353)
T TIGR02680 334 ELERARADAEALQAAAADARQAIREA--ESRLEEERRRLDEEAGRLDDAERELRA 386 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555444 225555666666655555554444433
No 91
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.51 E-value=5e+02 Score=31.76 Aligned_cols=104 Identities=23% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHh-
Q 021632 113 ELVAKNVESEILVNQVNEMDHVCNESRR-KIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRK- 190 (310)
Q Consensus 113 elVa~nve~d~l~del~~~er~~~Es~r-kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~- 190 (310)
+.-..|.+..-+.+.+++++.++++..- -+- .+--+.-|+.|+..|..+|.-|.-.+++.-+. ...++|+
T Consensus 144 ~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs-~q~k~~rl~QEksll~s~~~wL~~eL~~~~ek-------ll~~~re~ 215 (1822)
T KOG4674|consen 144 ENKDLNDQLKSSTKTLSELEARLQETQSEDVS-SQLKEERLEQEKSLLESENKWLSRELSKVNEK-------LLSLRREH 215 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhh
Confidence 3333334444444444444444444321 122 22335667888888888888888877776665 4444554
Q ss_pred ---hHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHh
Q 021632 191 ---ASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEK 226 (310)
Q Consensus 191 ---a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~ 226 (310)
.-+|--|+..+..+|--|=. ++..|.+++..|++
T Consensus 216 s~~~~~L~~~L~~~~~~~~~~q~--~~~~l~q~~~eLs~ 252 (1822)
T KOG4674|consen 216 SIEVEQLEEKLSDLKESLAELQE--KNKSLKQQNEELSK 252 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33555566666666654422 45555555555444
No 92
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=46.05 E-value=2.6e+02 Score=26.34 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH---
Q 021632 111 VAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFM--- 187 (310)
Q Consensus 111 vaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fm--- 187 (310)
.++.+.+-++.-.|+.+++ |+++..--+|+-||+.-. .+++||++|-..--||
T Consensus 29 E~ek~~~m~~~g~lm~evN---rrlQ~hl~EIR~LKe~Nq---------------------kLqedNqELRdLCCFLDdd 84 (195)
T PF10226_consen 29 EAEKMSLMVEHGRLMKEVN---RRLQQHLNEIRGLKEVNQ---------------------KLQEDNQELRDLCCFLDDD 84 (195)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcccchh
Confidence 3555555566666666665 566555555555554443 3446666655444444
Q ss_pred HHhhHHHHHH--------HHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 188 RRKASELAKC--------VLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 188 kr~a~ELArc--------vlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
|+|+..|||- .--||.+-..|. .|+-.|+.+...|-..|.++-|--...+.+-
T Consensus 85 RqKgrklarEWQrFGryta~vmr~eV~~Y~--~KL~eLE~kq~~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 85 RQKGRKLAREWQRFGRYTASVMRQEVAQYQ--QKLKELEDKQEELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHhHHHhHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 4444445442 122343333332 3777777777777777777666655555544
No 93
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.54 E-value=5.4e+02 Score=29.50 Aligned_cols=84 Identities=24% Similarity=0.299 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH-------HHhhhhh-------HHHHHHHHhhHHHHHHHHHhhcch
Q 021632 140 RKIELLKSLMELLESERMILVNENVKLGYQVSAVM-------EENKGLA-------SEAMFMRRKASELAKCVLRMREDY 205 (310)
Q Consensus 140 rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~-------eEnk~~a-------sEa~fmkr~a~ELArcvlkmredh 205 (310)
.+++=+|+....|+.+...||.-|+..--+++.++ ++|..++ .++.-+-+|..+.+..+-++|..+
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35566667777787777777666666555555443 2233322 223333334556677777777777
Q ss_pred hhhHhhhhHHHHHHHHHHHH
Q 021632 206 RVCILSQKIEDLQEQIYGLE 225 (310)
Q Consensus 206 rvc~l~rKIe~Lq~qIy~lE 225 (310)
.--.. +++.||..+-.+.
T Consensus 504 ~~l~~--e~~~lq~~~~~~~ 521 (980)
T KOG0980|consen 504 ALLLI--ELEELQRTLSNLA 521 (980)
T ss_pred HHHHH--HHHHHHHHhhhHH
Confidence 65333 7777777654443
No 94
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=44.46 E-value=29 Score=25.95 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHhhcHHHHHH
Q 021632 212 QKIEDLQEQIYGLEKRNKEYYQM 234 (310)
Q Consensus 212 rKIe~Lq~qIy~lE~rnre~yeq 234 (310)
.||+++-.||..||.....+-+|
T Consensus 19 qkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999776555443
No 95
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.98 E-value=1.1e+02 Score=25.79 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=44.0
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 021632 121 SEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVME 175 (310)
Q Consensus 121 ~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~e 175 (310)
..-|-+.|..||.++...-.+|+-+|..+..|-.|--.|--||..|=-++.....
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888999999888899999988888888888888888888777775544
No 96
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.96 E-value=3.5e+02 Score=31.88 Aligned_cols=72 Identities=25% Similarity=0.268 Sum_probs=40.9
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 021632 160 VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNRE 239 (310)
Q Consensus 160 l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E 239 (310)
+++|..++-+++.+++.-..+..|..-++..+ +.-.|.++..-. -+.+|+++|..||..++..--.+.+.+
T Consensus 580 ~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~------e~~~~~~~~~~e---~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 580 LEENRDLEDKLSLLEESKSKLSKENKKLRSEL------EKERRQRTEISE---IIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH---HHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 45677777777777766555555554444422 222222333322 256777777777777766665555555
Q ss_pred H
Q 021632 240 Q 240 (310)
Q Consensus 240 ~ 240 (310)
.
T Consensus 651 e 651 (1317)
T KOG0612|consen 651 E 651 (1317)
T ss_pred H
Confidence 5
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.77 E-value=3.4e+02 Score=28.06 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH---HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHh
Q 021632 147 SLMELLESERMI---LVNENVKLGYQVSAVMEENKGLASEAMFMRRK 190 (310)
Q Consensus 147 ~ll~vLesEr~v---ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~ 190 (310)
.+-+.|+.|..+ .-....++.-.+.++.+.|..+..|...++..
T Consensus 293 ~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 293 QLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455555554 35556677777788888888877777777775
No 98
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=43.74 E-value=2.8e+02 Score=26.00 Aligned_cols=33 Identities=39% Similarity=0.603 Sum_probs=28.6
Q ss_pred HHhhhhcHHHHHHH---HHHHHHHHHHHHHhhhccc
Q 021632 24 EWYYQKRPQLLALL---KDLYNGYITLLDRCRNHKK 56 (310)
Q Consensus 24 EmYYqkRPeLi~~v---ee~yr~YraLAeRYd~~~~ 56 (310)
+-|.+-|-|||+-| +.||..|-.|..+|..++.
T Consensus 44 ~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~ 79 (196)
T PF15272_consen 44 EKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKK 79 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999865 6799999999999998885
No 99
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.43 E-value=1.9e+02 Score=31.51 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 021632 139 RRKIELLKSLMELLESERMIL---VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVL 199 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vl---l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvl 199 (310)
.++++=++..++.|+++.+-+ +..-++.+-.+.+...++..|..++..-+.++.+|.+-+.
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 442 KRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443 2233444445555555555555555555554444444333
No 100
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=43.17 E-value=1.2e+02 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=17.4
Q ss_pred hhhHhh---hhHHHHHHHHHHHHhhcHHH
Q 021632 206 RVCILS---QKIEDLQEQIYGLEKRNKEY 231 (310)
Q Consensus 206 rvc~l~---rKIe~Lq~qIy~lE~rnre~ 231 (310)
++.||- .||-.||.++..++.-.+..
T Consensus 185 F~~vLNeKK~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 185 FVLVLNEKKAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhccccch
Confidence 455553 47888888888888654433
No 101
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.95 E-value=2.7e+02 Score=25.50 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=7.2
Q ss_pred hhhhhhhHHHHHHHH
Q 021632 132 DHVCNESRRKIELLK 146 (310)
Q Consensus 132 er~~~Es~rkieLlk 146 (310)
++.+.|+.+++.++.
T Consensus 112 e~k~~E~~rkl~~~E 126 (237)
T PF00261_consen 112 ERKYEEVERKLKVLE 126 (237)
T ss_dssp HHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455544444
No 102
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.98 E-value=2.8e+02 Score=25.57 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHhhcHH
Q 021632 213 KIEDLQEQIYGLEKRNKE 230 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre 230 (310)
++..|++++..++.+.+.
T Consensus 154 ~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666655443
No 103
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.07 E-value=5.3e+02 Score=28.45 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=51.5
Q ss_pred hhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 164 VKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 164 a~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
-.|.-+...+..|+..+..|+.-+|. ++..+..+-..+..++- ..+..|..++..+|+..++=-+.+...|.++.
T Consensus 355 eiLe~Ky~vav~Ev~~Lk~ELk~Lk~---k~~~~~~~~~~ek~~~~--~e~q~L~ekl~~lek~~re~qeri~~LE~ELr 429 (717)
T PF09730_consen 355 EILECKYKVAVSEVIQLKAELKALKS---KYNELEERYKQEKDRLE--SEVQNLKEKLMSLEKSSREDQERISELEKELR 429 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34566777777888888888888877 66666665555544432 36777777777777777766666666666654
Q ss_pred h
Q 021632 244 E 244 (310)
Q Consensus 244 ~ 244 (310)
.
T Consensus 430 ~ 430 (717)
T PF09730_consen 430 A 430 (717)
T ss_pred H
Confidence 3
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.76 E-value=5e+02 Score=27.76 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 021632 32 QLLALLKDLYN 42 (310)
Q Consensus 32 eLi~~vee~yr 42 (310)
-|-..+.+.+|
T Consensus 248 ~l~~~l~e~lr 258 (594)
T PF05667_consen 248 RLQKRLAEQLR 258 (594)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 105
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.53 E-value=73 Score=23.45 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.|+.|+.++..|+..|..+-..+.....++...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999988888888777654
No 106
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.47 E-value=1.8e+02 Score=22.63 Aligned_cols=29 Identities=38% Similarity=0.216 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 021632 152 LESERMILVNENVKLGYQVSAVMEENKGL 180 (310)
Q Consensus 152 LesEr~vll~Ena~Lg~~~s~~~eEnk~~ 180 (310)
|+.+...|-+.+-.+--+++.-+.++|.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 107
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.95 E-value=1.9e+02 Score=22.70 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=42.6
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 021632 122 EILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGL 180 (310)
Q Consensus 122 d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~ 180 (310)
+.|.+.|.+.=+.+++-..+=.+|..-+..+.+||.-|+.-|.--..+|-+...-.+.+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34555565555667777778888888888889999888887777777777666655544
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.60 E-value=3.8e+02 Score=26.01 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHh
Q 021632 213 KIEDLQEQIYGLEK 226 (310)
Q Consensus 213 KIe~Lq~qIy~lE~ 226 (310)
.+...++++..|.+
T Consensus 121 q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 121 QYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444443
No 109
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.33 E-value=3.7e+02 Score=30.71 Aligned_cols=67 Identities=22% Similarity=0.189 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHh
Q 021632 135 CNESRRKIELLKSLMELLESERMILVNENVKLGYQ-VSAVMEENKGLASEAMFMRRKASELAKCVLRM 201 (310)
Q Consensus 135 ~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~-~s~~~eEnk~~asEa~fmkr~a~ELArcvlkm 201 (310)
.....+|.|=+-+.++.|+-|...++.|.+.|.-. .++++..|..++.=.-.++.|=.++|-++++.
T Consensus 482 ~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 482 AGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33334577888899999999999999999999888 45566666665555556677777777777665
No 110
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.29 E-value=6.1e+02 Score=29.60 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccccccccc--hhhhhhhhhHHHhhhc
Q 021632 211 SQKIEDLQEQIYGLEKR-NKEYYQMLVNREQQVKEYENSWSNSNSTSSSSSYVKEKSAQVTL--ESCFQSFEKIKLKKKK 287 (310)
Q Consensus 211 ~rKIe~Lq~qIy~lE~r-nre~yeql~~~E~e~~~~~~~~~~~~~~~~s~sksk~~~~~v~~--~~cfq~~~k~k~~k~k 287 (310)
..++..||..+-.||.+ |......+.+.|..+....+ +..-|.- .---+++.++-.+|+-
T Consensus 964 re~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~-----------------k~~~Ie~Dk~kI~ktI~~lDe~k~~ 1026 (1174)
T KOG0933|consen 964 REELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKT-----------------KKEIIEKDKSKIKKTIEKLDEKKRE 1026 (1174)
T ss_pred HHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44899999999999965 55666777777776665531 1222211 0112233444333333
Q ss_pred CCchHHHhhhcc--cccccCCCC
Q 021632 288 GSSNWWERVKKA--DFFNCGLPS 308 (310)
Q Consensus 288 ~~~~~w~~vk~~--d~f~cg~p~ 308 (310)
.--+=|.+|+.= .+|.|=+|+
T Consensus 1027 ~L~kaw~~VN~dFG~IFs~LLPg 1049 (1174)
T KOG0933|consen 1027 ELNKAWEKVNKDFGSIFSTLLPG 1049 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCC
Confidence 456789998751 345566665
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.20 E-value=2.8e+02 Score=24.46 Aligned_cols=82 Identities=24% Similarity=0.227 Sum_probs=56.8
Q ss_pred hhhhHHHHHHhhhhhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHh
Q 021632 118 NVESEILVNQVNEMDHVCNESR-------RKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRK 190 (310)
Q Consensus 118 nve~d~l~del~~~er~~~Es~-------rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~ 190 (310)
--+.|-|.|.|--|||.+.-+. ..-+=.+..+.-|+.+..++-.+.-+|.--+.++..|...+..++.-++.+
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666664432 233344466666777777777777778888888888998899999999998
Q ss_pred hHHHHHHHH
Q 021632 191 ASELAKCVL 199 (310)
Q Consensus 191 a~ELArcvl 199 (310)
+.+|-....
T Consensus 96 v~eLE~~~~ 104 (140)
T PF10473_consen 96 VSELESLNS 104 (140)
T ss_pred HHHHHHHhH
Confidence 888876554
No 112
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.20 E-value=3.4e+02 Score=25.42 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhh-hhhHHHHHHHH
Q 021632 123 ILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENK-GLASEAMFMRR 189 (310)
Q Consensus 123 ~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk-~~asEa~fmkr 189 (310)
+|--.|..|+..+.++.+.+.=+.-.--.|+.+..-+.....++..++-.++.-.. .||.+++-=+.
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~ 95 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445666777777775544433333344445555555555666655554443322 25555555444
No 113
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.79 E-value=1.8e+02 Score=22.51 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 217 LQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 217 Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
++.++..+|.||+++-..+.+.+.++++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788899999999999999888888763
No 114
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.53 E-value=1.3e+02 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 021632 121 SEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAV 173 (310)
Q Consensus 121 ~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~ 173 (310)
+.-|-+.+..||.+++..-.++.-||..|..|-.|--.|--||..|=-++..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567888889999988888888888888888777777777787777777644
No 115
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.34 E-value=1.3e+02 Score=23.87 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIE 143 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkie 143 (310)
..+.+++...-++-.+..++...-.+.|+.+++|.
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~ 60 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444444433344444444443
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.88 E-value=4.4e+02 Score=26.04 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=8.8
Q ss_pred hhhcHHHHHHHHHH
Q 021632 27 YQKRPQLLALLKDL 40 (310)
Q Consensus 27 YqkRPeLi~~vee~ 40 (310)
-+.||-+...++++
T Consensus 77 l~Sr~v~~~vi~~l 90 (498)
T TIGR03007 77 LLSRPNLEKVIRML 90 (498)
T ss_pred HhChHHHHHHHHHc
Confidence 36676666666655
No 117
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.36 E-value=7.3e+02 Score=28.40 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHH--HHHHHHHHHHHHHHHhhhhhh
Q 021632 106 NIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELL--KSLMELLESERMILVNENVKL 166 (310)
Q Consensus 106 ~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLl--k~ll~vLesEr~vll~Ena~L 166 (310)
.++++.+++-..+-+...+..+++............|..+ +..+..++.+...|-.+|+.+
T Consensus 985 ~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 985 QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666655555554444443334444444 334444444444444444444
No 118
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.10 E-value=76 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQ 241 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e 241 (310)
.+.+|+.+|..|+..|..+..++...+.|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788999999999998888877766543
No 119
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.76 E-value=1.2e+02 Score=24.16 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHhhhhhhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021632 124 LVNQVNEMDHVCNES-----RRKIELLKSLMELLESERMILVNENVKLGYQ 169 (310)
Q Consensus 124 l~del~~~er~~~Es-----~rkieLlk~ll~vLesEr~vll~Ena~Lg~~ 169 (310)
-.++|...|+++..+ ++|.+++..-+..|+.--..|.++|-.|--+
T Consensus 47 s~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 47 SLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776 3566666666666666555556666555433
No 120
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=34.71 E-value=45 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHh
Q 021632 193 ELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEK 226 (310)
Q Consensus 193 ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~ 226 (310)
+|..++.+++. |.+.+..||.|||.+|-
T Consensus 3 ~L~~l~~~k~~------Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 3 ELKELLQKKKK------LEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 55555555443 23457789999999985
No 121
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.54 E-value=8.5e+02 Score=28.89 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021632 140 RKIELLKSLMELLESE 155 (310)
Q Consensus 140 rkieLlk~ll~vLesE 155 (310)
..|+.+++-+..+|..
T Consensus 834 ~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 834 ELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555555
No 122
>smart00574 POX domain associated with HOX domains.
Probab=33.68 E-value=49 Score=29.51 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.4
Q ss_pred ccHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q 021632 17 DTFAERAEWYYQKRPQLLALLKDLYNGYITL 47 (310)
Q Consensus 17 DSFAkRAEmYYqkRPeLi~~vee~yr~YraL 47 (310)
.|.++|.| .-.|+-.|++||+++.+.|+--
T Consensus 67 ls~~~r~e-~q~kk~kLl~mL~eVd~RY~qY 96 (140)
T smart00574 67 LSTAERQE-LQRKKAKLLSMLEEVDRRYKHY 96 (140)
T ss_pred CchhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999 7788889999999999999753
No 123
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.19 E-value=3.8e+02 Score=24.51 Aligned_cols=57 Identities=25% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHh
Q 021632 145 LKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRM 201 (310)
Q Consensus 145 lk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkm 201 (310)
+...+..|+.|.+.|-..|..+.-.+.....+...+......+..--.+|.-++.+|
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555455666666666666666665555555555444555554444
No 124
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=32.70 E-value=2.6e+02 Score=22.49 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 126 NQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 126 del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
.||-.|++.+.+....+.-+..-+-.||.-+..+..|.++---+.-+++-....+..|...++.
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666655555555555555666666666666655555555666666666666666665
No 125
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.34 E-value=5.9e+02 Score=29.62 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhhhhhHHHHhhhhhHHH
Q 021632 139 RRKIELLKSLMELLESERMI---LVNENVKLGYQVSAVMEENKGLASEA 184 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~v---ll~Ena~Lg~~~s~~~eEnk~~asEa 184 (310)
+.+|.+|.+-|..||.=+++ |.+-|--|..-+---++-++|+-.|+
T Consensus 461 EekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel 509 (1243)
T KOG0971|consen 461 EEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKEL 509 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 56777777777777665555 44555555554444444444444343
No 126
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.31 E-value=4.5e+02 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=13.3
Q ss_pred Hhhcch-hhhHhhhhHHHHHHHHHH
Q 021632 200 RMREDY-RVCILSQKIEDLQEQIYG 223 (310)
Q Consensus 200 kmredh-rvc~l~rKIe~Lq~qIy~ 223 (310)
.+.++| .|=-+-.+|..|++||..
T Consensus 236 ~~~~~~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 236 ITPEQNPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred hCCCCCCchHHHHHHHHHHHHHHHH
Confidence 445556 444444566666666654
No 127
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.06 E-value=1.6e+02 Score=33.18 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021632 34 LALLKDLYNGYITLLDRC 51 (310)
Q Consensus 34 i~~vee~yr~YraLAeRY 51 (310)
.+-+....++|+.+++.-
T Consensus 400 k~k~~~~~~~~~~~~~~~ 417 (913)
T KOG0244|consen 400 KDKLRRRTDSCMNLLSED 417 (913)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455566666666665
No 128
>PRK14154 heat shock protein GrpE; Provisional
Probab=31.86 E-value=60 Score=30.31 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=25.2
Q ss_pred chhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 204 DYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 204 dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
-||.-+.+-.|+.|+++|..|+....++.+++.|..++.+
T Consensus 44 ~~~~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfe 83 (208)
T PRK14154 44 PHREGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMD 83 (208)
T ss_pred cccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666555544
No 129
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.62 E-value=8.1e+02 Score=27.78 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=33.9
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHH
Q 021632 160 VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLR 200 (310)
Q Consensus 160 l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlk 200 (310)
....|.|+-++.++--|--+|-.|.+++|. |||.-+++
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~---ela~~l~~ 445 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKK---ELAAALLK 445 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhhhh
Confidence 667788999999999999999999999999 88887777
No 130
>smart00338 BRLZ basic region leucin zipper.
Probab=31.57 E-value=1.2e+02 Score=22.26 Aligned_cols=47 Identities=28% Similarity=0.251 Sum_probs=32.7
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhH
Q 021632 136 NESRRKIELL-KSLMELLESERMILVNENVKLGYQVSAVMEENKGLAS 182 (310)
Q Consensus 136 ~Es~rkieLl-k~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~as 182 (310)
.+|+++-..- +.-+..|+.+...|-.+|..|...++.+..++..+..
T Consensus 14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 4667778888888888888888888888777666443
No 131
>PRK10203 hypothetical protein; Provisional
Probab=30.75 E-value=3e+02 Score=23.93 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=48.4
Q ss_pred hhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhh-HhhhhHHHHHHHHHHHHhhc----HHHHHHHH
Q 021632 164 VKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVC-ILSQKIEDLQEQIYGLEKRN----KEYYQMLV 236 (310)
Q Consensus 164 a~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc-~l~rKIe~Lq~qIy~lE~rn----re~yeql~ 236 (310)
.+.||++ ..|.|..-+.+-+++++..|..++....+++-.+ -+.+++..|+.++..+-.+. .+|++++.
T Consensus 43 ~r~~~ri----lknag~lP~el~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki~ 116 (122)
T PRK10203 43 LRAGYRL----LKNAGCLPPELEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLL 116 (122)
T ss_pred HHHHHHH----HhhCCCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 4556663 5778888888999998888888888888766443 56678888888887665433 33554443
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.17 E-value=1.6e+02 Score=21.57 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhh
Q 021632 147 SLMELLESERMILVNENVKLGYQVSAVMEENKGL 180 (310)
Q Consensus 147 ~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~ 180 (310)
..+..|+.....|-.+|..|...+..+..++..|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555544444444444443
No 133
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.10 E-value=2.8e+02 Score=26.19 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhh
Q 021632 148 LMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKR 227 (310)
Q Consensus 148 ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~r 227 (310)
+=++-..|--+|=++|++|.-++.+++.+..-..+|++-|- .+| -++.+|..|..|-+-
T Consensus 73 F~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~-------------------s~L--t~eemQe~i~~L~ke 131 (201)
T KOG4603|consen 73 FDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS-------------------SAL--TTEEMQEEIQELKKE 131 (201)
T ss_pred hcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------Hhc--ChHHHHHHHHHHHHH
Confidence 33444555666789999999999999988888777776553 355 588999999999988
Q ss_pred cHHHHHHHHHHH
Q 021632 228 NKEYYQMLVNRE 239 (310)
Q Consensus 228 nre~yeql~~~E 239 (310)
.+.|.+.|...-
T Consensus 132 v~~~~erl~~~k 143 (201)
T KOG4603|consen 132 VAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHH
Confidence 888888776543
No 134
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.80 E-value=4.7e+02 Score=24.48 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 021632 135 CNESRRKIELLKSLMELLESERM 157 (310)
Q Consensus 135 ~~Es~rkieLlk~ll~vLesEr~ 157 (310)
+.++..++.+|..-+-+++.|+.
T Consensus 28 L~e~e~~a~~Leek~k~aeeea~ 50 (246)
T PF00769_consen 28 LEESEETAEELEEKLKQAEEEAE 50 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444443
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=29.56 E-value=4.8e+02 Score=24.48 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 021632 215 EDLQEQIYGLEK 226 (310)
Q Consensus 215 e~Lq~qIy~lE~ 226 (310)
..++.+|..++.
T Consensus 249 ~~~~~~l~~~~~ 260 (423)
T TIGR01843 249 TEAQARLAELRE 260 (423)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 136
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.38 E-value=6.5e+02 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=19.9
Q ss_pred hhhHhhhhHHHHHHHHHHHHhhcHH
Q 021632 206 RVCILSQKIEDLQEQIYGLEKRNKE 230 (310)
Q Consensus 206 rvc~l~rKIe~Lq~qIy~lE~rnre 230 (310)
.+..|-+-|.++++||..||+.-++
T Consensus 331 q~~~Lrs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 331 QYTLLRSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 4567777899999999999977654
No 137
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=68 Score=28.56 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=22.6
Q ss_pred HHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHh
Q 021632 187 MRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEK 226 (310)
Q Consensus 187 mkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~ 226 (310)
.|+ |||.+|-+.++.-- -.-.||.|||++|-
T Consensus 15 ~ka---EL~elikkrqe~ee------tl~nLe~qIY~~Eg 45 (135)
T KOG3856|consen 15 TKA---ELAELIKKRQELEE------TLANLERQIYAFEG 45 (135)
T ss_pred HHH---HHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Confidence 455 89988887776332 24578999999984
No 138
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.17 E-value=6.3e+02 Score=26.29 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH
Q 021632 126 NQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFM 187 (310)
Q Consensus 126 del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fm 187 (310)
+.+..+.+.+.+-+++|..+++-...|+.+.--+-.++..+...+.....+++.+......+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 44555566666667777777777777777766666666666666655555555444333333
No 139
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=29.03 E-value=83 Score=27.44 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=26.2
Q ss_pred cccHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q 021632 16 GDTFAERAEWYYQKRPQLLALLKDLYNGYITL 47 (310)
Q Consensus 16 gDSFAkRAEmYYqkRPeLi~~vee~yr~YraL 47 (310)
..|-++|.| +-.|+-.|++||+++.|.|+--
T Consensus 66 ~ls~~~~~e-~q~kK~KLl~mL~eVd~RY~qY 96 (140)
T PF07526_consen 66 ELSPAERQE-LQRKKAKLLSMLDEVDRRYRQY 96 (140)
T ss_pred CCChhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999 7888999999999999999853
No 140
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.02 E-value=2.3e+02 Score=23.06 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 211 SQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 211 ~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
.+||..|+.+|-.++..-....+++...+..+.
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666666666555443
No 141
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=28.81 E-value=4.4e+02 Score=23.77 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhhcccccccCCCccccccCCCCCCCCCcccccccccccCcchhhhhhhHHHhhcChhHHHHHHHHHhh
Q 021632 40 LYNGYITLLDRCRNHKKHHFRNGSSETIITASSSADAESDAESTISYQQQQITTTTATMAAAAASANIDDLVAELVAKNV 119 (310)
Q Consensus 40 ~yr~YraLAeRYd~~~~~~~~n~t~~~~~~g~S~~d~dSdaeSsls~Q~~~~~~~~~~~~~~~~~~~idelvaelVa~nv 119 (310)
+..+--.+|+-|-+..+-+..+|+....+..+...+ +..- . +|++ .-.+.++.+-+++|-+.-
T Consensus 8 LQd~vn~~A~qf~naig~Lq~~~pp~~l~~~e~~~~--~~~~-~---~pa~-----------p~~~~~~~laa~i~~~ak 70 (139)
T KOG1510|consen 8 LQDTVNEMAEQFCNAIGVLQQTHPPVPLPNNEPESP--DKVN-P---IPAE-----------PFEEYAQLLAADIAKKAK 70 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCC--CCCC-C---CCCC-----------ccHHHHHHHHHHHHHHHH
Confidence 334445678888777777777777654444444321 1111 1 1122 114567889999999999
Q ss_pred hhHHHHHHhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 120 ESEILVNQVNEMDHVCNES-RRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 120 e~d~l~del~~~er~~~Es-~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
+-|+|.+-|=-.+-- .|+ -++|.-|......-.-|+..++.++-+|=-+|..+.++
T Consensus 71 qId~LIdsLP~~~~~-~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~ 127 (139)
T KOG1510|consen 71 QIDTLIDSLPGEEGS-AEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLED 127 (139)
T ss_pred HHHHHHHhCCCcccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877421111 111 12333333333333445555666666665566655554
No 142
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=28.50 E-value=4e+02 Score=25.86 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=58.1
Q ss_pred hhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 165 KLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 165 ~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
.|--+.+.+..+++.+..++.-.++++..|.+..-+++.+|...+. -...|+.==+.|+..|+.+-+-..+.-.+.
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~--~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee 101 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAIL--AKSKLESLCRELQKQNKKLKEESKRRAREE 101 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888888889899999988888889988887 567777777888888887776555443333
No 143
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.01 E-value=2.9e+02 Score=21.51 Aligned_cols=50 Identities=24% Similarity=0.185 Sum_probs=28.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 133 HVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 133 r~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
.++.-+.++++........|-.||+..+ .++.-+-+++-.|-.|.-++++
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~-------~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAE-------RQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456777777766666666666543 3344445555555555555655
No 144
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.39 E-value=3.4e+02 Score=23.17 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=19.0
Q ss_pred hhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 021632 119 VESEILVNQVNEMDHVCNESRRKIELLKSLMELLES 154 (310)
Q Consensus 119 ve~d~l~del~~~er~~~Es~rkieLlk~ll~vLes 154 (310)
..++.+.+.-...|+++.-....|.+|+.-+...+.
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~ 55 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEA 55 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566665555555555554444443
No 145
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.32 E-value=4.1e+02 Score=29.37 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHH----HHhhhhhhhhhhhh-------HHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc
Q 021632 147 SLMELLESERMI----LVNENVKLGYQVSA-------VMEENKGLASEAMFMRRKASELAKCVLRMRE 203 (310)
Q Consensus 147 ~ll~vLesEr~v----ll~Ena~Lg~~~s~-------~~eEnk~~asEa~fmkr~a~ELArcvlkmre 203 (310)
-.|-+.+-+-+. |-.||-.|---+-+ +++.++++.-|++-+|.+|-+ ||--.+-.+
T Consensus 318 NALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~-ar~~~~~~e 384 (832)
T KOG2077|consen 318 NALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED-ARQKAKDDE 384 (832)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccc
Confidence 445555555444 55667666433322 467788899999999998754 444433333
No 146
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.13 E-value=6.1e+02 Score=24.90 Aligned_cols=86 Identities=13% Similarity=0.267 Sum_probs=46.4
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCccccccCCCCCCCCCcccccccccccCcchhhhhhhHHHhhc
Q 021632 26 YYQKRPQLLALLKDLYNGYITLLDRCRNHKKHHFRNGSSETIITASSSADAESDAESTISYQQQQITTTTATMAAAAASA 105 (310)
Q Consensus 26 YYqkRPeLi~~vee~yr~YraLAeRYd~~~~~~~~n~t~~~~~~g~S~~d~dSdaeSsls~Q~~~~~~~~~~~~~~~~~~ 105 (310)
=|+-||...+.|+.++-=|=-+|--|..-.... ++.-.. ..|+.-. .. |..|... . ......
T Consensus 91 gY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~-RS~yLe-~Lc~IIq-----eL------q~t~~~~----L-S~~dl~ 152 (269)
T PF05278_consen 91 GYQVKPSQVSILQKIFEKHGDIASNCKLKSQQF-RSYYLE-CLCDIIQ-----EL------QSTPLKE----L-SESDLK 152 (269)
T ss_pred CEEEcHhHHHHHHHHHHhCccHhhccccCcHHH-HHHHHH-HHHHHHH-----HH------hcCcHhh----h-hHHHHH
Confidence 378889999888888876666665553221100 000000 0122111 11 1111111 0 124456
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHhh
Q 021632 106 NIDDLVAELVAKNVESEILVNQVN 129 (310)
Q Consensus 106 ~idelvaelVa~nve~d~l~del~ 129 (310)
.+..++.++-.++|+++-|+..|.
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~ 176 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLE 176 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHH
Confidence 677889999999999999987775
No 147
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.93 E-value=3e+02 Score=21.70 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=40.5
Q ss_pred HHhhhhhHHHHHHHHhhHHHHHHHHHhhc--chhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 021632 175 EENKGLASEAMFMRRKASELAKCVLRMRE--DYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNRE 239 (310)
Q Consensus 175 eEnk~~asEa~fmkr~a~ELArcvlkmre--dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E 239 (310)
-+.+.+..++.++|. .|.+|=..+++ + .+|=++.-+++|..||++++.-.+-|.+.-
T Consensus 21 ~~~kd~~~~~~~lk~---Klq~ar~~i~~lpg-----i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 21 LSSKDLDTATGSLKH---KLQKARAAIRELPG-----IDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred CCHHHHHHHHHHHHH---HHHHHHHHHHhCCC-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999 44444433333 4 456788899999999999988777665543
No 148
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.66 E-value=1e+02 Score=27.99 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021632 128 VNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKL 166 (310)
Q Consensus 128 l~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~L 166 (310)
|..||..+|.+=-+--||.+.| -||+.|..++-||
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRL 36 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRL 36 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHH
Confidence 4567888888865666666555 5677777666554
No 149
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.51 E-value=5e+02 Score=23.75 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHH
Q 021632 139 RRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCV 198 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcv 198 (310)
.++++-++.-...|+.-...+-.+.+.|..++..+..-..++. -+|.+-..+|-+.|
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~---p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV---PLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555544444432 24444444554433
No 150
>smart00338 BRLZ basic region leucin zipper.
Probab=26.48 E-value=1.5e+02 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.|..|+.+|..|+.-|..+-.++...+.|+...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888888888888888777776544
No 151
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.45 E-value=3.7e+02 Score=22.11 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 147 SLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 147 ~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
+-+.+|.+|.+-|-+.|..|---++.++.-..++.+|.--+|.
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777788998888888888888888888888887
No 152
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=26.10 E-value=2.8e+02 Score=26.92 Aligned_cols=99 Identities=31% Similarity=0.321 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHH--------------HHHHHHHh--h
Q 021632 142 IELLKSLMELLESERMIL---VNENVKLGYQVSAVMEENKGLASEAMFMRRKASE--------------LAKCVLRM--R 202 (310)
Q Consensus 142 ieLlk~ll~vLesEr~vl---l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~E--------------LArcvlkm--r 202 (310)
|+.++.-|.+|+.|+..+ ...|..||-.|.++..+.=. .+|+--.+.-.+. |||..-.+ -
T Consensus 95 i~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~-p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~ 173 (264)
T PF08687_consen 95 IESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCK-PNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSL 173 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556678889999987 67799999999988877533 3343333333333 34432221 1
Q ss_pred c---c--hhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 203 E---D--YRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 203 e---d--hrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
+ + -|..+. .|..-|..|--.+ +++-+-+.|+|.-|-+..
T Consensus 174 ~~~~~~~Er~~L~-~k~~~L~~Q~edA----k~LKe~~drRe~~v~~iL 217 (264)
T PF08687_consen 174 DEDADPEERESLL-EKRRLLQRQLEDA----KELKENLDRRERVVSEIL 217 (264)
T ss_dssp H-----HHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHH-HHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHH
Confidence 1 2 366555 3677777776555 566667777777776554
No 153
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=25.46 E-value=8.1e+02 Score=25.78 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=48.1
Q ss_pred hHHHHHHhhhhhhhhhhhHH-----HHHHHH---HHHHHHHHHHHH--HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHh
Q 021632 121 SEILVNQVNEMDHVCNESRR-----KIELLK---SLMELLESERMI--LVNENVKLGYQVSAVMEENKGLASEAMFMRRK 190 (310)
Q Consensus 121 ~d~l~del~~~er~~~Es~r-----kieLlk---~ll~vLesEr~v--ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~ 190 (310)
-+.+++||.++-+-..-.++ |.++++ =+.+-|+.||-. .|+|.. .-+.|= --.|..+||+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqL------NdlteL---qQnEi~nLKq- 331 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQL------NDLTEL---QQNEIANLKQ- 331 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHH---HHHHHHHHHH-
Confidence 45667777655444332233 333333 245667777755 244432 222111 2357888998
Q ss_pred hHHHHHHHHHhhcch--hhhHhhhhHHHHHHHHHHHHh
Q 021632 191 ASELAKCVLRMREDY--RVCILSQKIEDLQEQIYGLEK 226 (310)
Q Consensus 191 a~ELArcvlkmredh--rvc~l~rKIe~Lq~qIy~lE~ 226 (310)
|||-..-+|.=+| |.-=.-.-+|.+|..|.-||.
T Consensus 332 --ElasmeervaYQsyERaRdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 332 --ELASMEERVAYQSYERARDIQEALESCQTRISKLEL 367 (455)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776555554332 221111235667777777764
No 154
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.26 E-value=2.2e+02 Score=26.94 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLV 236 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~ 236 (310)
.+..|+.+|..||...+.+.+++.
T Consensus 19 e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 19 ENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655555555553
No 155
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.16 E-value=1.1e+03 Score=27.03 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhhhhHHHHhhhhhHHHHHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMIL-VNENVKLGYQVSAVMEENKGLASEAMFM 187 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vl-l~Ena~Lg~~~s~~~eEnk~~asEa~fm 187 (310)
++...+...+..++.+..++....+.+.-+..+++-++.-..-|+.+.... -++-..++..++.+..+.+.+..|..-+
T Consensus 625 ~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 625 ELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666665555544444444444444444444444332 2223344445555555544444444333
Q ss_pred HHhhHHHHHHHHHhhcchhhhHhh------hhHHHHHHHHHHH----HhhcHHHHHHHHHHHHHHHhhh
Q 021632 188 RRKASELAKCVLRMREDYRVCILS------QKIEDLQEQIYGL----EKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 188 kr~a~ELArcvlkmredhrvc~l~------rKIe~Lq~qIy~l----E~rnre~yeql~~~E~e~~~~~ 246 (310)
+. ..+++|+.+-.. ....++.++|..+ +.++..+-+++.+.+.+.+...
T Consensus 705 ~~----------~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL 763 (1201)
T PF12128_consen 705 LE----------ELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQEL 763 (1201)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333333222110 1233444444433 3455666677777777776665
No 156
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.11 E-value=1e+03 Score=26.77 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=56.1
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhH-HHHHHHHHh---------hc--
Q 021632 141 KIELLKSLME-----LLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKAS-ELAKCVLRM---------RE-- 203 (310)
Q Consensus 141 kieLlk~ll~-----vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~-ELArcvlkm---------re-- 203 (310)
+-+|-|++++ .+..+-++++-|..+.| .+....=+.++--+...+++... ||+..|--+ .+
T Consensus 560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~g--~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a 637 (762)
T PLN03229 560 KAEINKKFKEVMDRPEIKEKMEALKAEVASSG--ASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKD 637 (762)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC--ccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhc
Confidence 4444455555 24455555666666666 33333444555556666666444 455443211 11
Q ss_pred ---chhhhHhhhhHHHHHHHHHH-HH--hhcHHHHHHHHHHHHHHHh
Q 021632 204 ---DYRVCILSQKIEDLQEQIYG-LE--KRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 204 ---dhrvc~l~rKIe~Lq~qIy~-lE--~rnre~yeql~~~E~e~~~ 244 (310)
.-=---+..||+.|+.||.. +| -+.-++-+.++....|+..
T Consensus 638 ~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evak 684 (762)
T PLN03229 638 TAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAK 684 (762)
T ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 00001124599999999864 34 5677777888888888743
No 157
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.99 E-value=2e+02 Score=21.77 Aligned_cols=47 Identities=21% Similarity=0.124 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH
Q 021632 141 KIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFM 187 (310)
Q Consensus 141 kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fm 187 (310)
+|.=+.++...|.+||+.=+-++-..-.+++.+..||+.|-.|+--.
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788899999998866566566677888888888766655433
No 158
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=24.97 E-value=6e+02 Score=27.62 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcH
Q 021632 150 ELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNK 229 (310)
Q Consensus 150 ~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnr 229 (310)
.-|+......-+++-.|--.+..+..+.+.+..+...+.+ ++.+|.-.++.. ..|+.. ....|..+. .=++-+|
T Consensus 230 ~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~-~~~L~~-~~~~l~~~~-~e~~~r~ 303 (670)
T KOG0239|consen 230 KPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTR---EVQEALKESNTL-QSDLES-LEENLVEKK-KEKEERR 303 (670)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHH-HHHHHHHHH-HHHHHHH
Confidence 3344444444555555555555555555556666666666 555555555554 333332 223333333 3336677
Q ss_pred HHHHHHHHHHHHHHhhh
Q 021632 230 EYYQMLVNREQQVKEYE 246 (310)
Q Consensus 230 e~yeql~~~E~e~~~~~ 246 (310)
.+|.++.....-+--+|
T Consensus 304 kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 304 KLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHhhcCceEEE
Confidence 77777776666555444
No 159
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.69 E-value=7e+02 Score=24.79 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHH
Q 021632 146 KSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLE 225 (310)
Q Consensus 146 k~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE 225 (310)
.+-+..|.-+...+-++.+.|--.++.--++...+-.++--+|.+|-+|-.-+++....-..| +..|-.+|+.|.+++
T Consensus 164 ~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~--~ee~~~~~~elre~~ 241 (294)
T COG1340 164 KAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL--HEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHH
Confidence 344445566666678888888888888888888888999999999999999888887744443 336777888888887
Q ss_pred hhcHHHHHH
Q 021632 226 KRNKEYYQM 234 (310)
Q Consensus 226 ~rnre~yeq 234 (310)
.+-+.+-..
T Consensus 242 k~ik~l~~~ 250 (294)
T COG1340 242 KKIKALRAK 250 (294)
T ss_pred HHHHHHHHH
Confidence 766655443
No 160
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.09 E-value=3.7e+02 Score=29.77 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhh-------HHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNES-------RRKIELLK-------SLMELLESERMILVNENVKLGYQVSAVM 174 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es-------~rkieLlk-------~ll~vLesEr~vll~Ena~Lg~~~s~~~ 174 (310)
.|+-+|.-++-.+-||-..|+..+|+.--. .-+|..|. +|-+.|-+|-+++.+-.+++.-. .
T Consensus 463 sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~----~ 538 (852)
T KOG4787|consen 463 SLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQC----C 538 (852)
T ss_pred HHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHH----H
Confidence 566778888888888888888777754211 23444433 55566666666654444433221 1
Q ss_pred HHhhhhhHH-HHHHHHhhHHHHHHHHHhhcchhhhHh
Q 021632 175 EENKGLASE-AMFMRRKASELAKCVLRMREDYRVCIL 210 (310)
Q Consensus 175 eEnk~~asE-a~fmkr~a~ELArcvlkmredhrvc~l 210 (310)
++...-.++ +.|.|+ =|-+-..+.|+.|+.|.+
T Consensus 539 evL~~~~~~t~~l~Kq---~L~~~~~q~de~r~s~~~ 572 (852)
T KOG4787|consen 539 EVLAAVETQTGRLCKQ---FLKIDHAQKDERRRSLSK 572 (852)
T ss_pred HHHHHHhhhHHHHHHH---HHHhcccCcchHHHHHHh
Confidence 222221111 233333 333333456779999987
No 161
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.07 E-value=1.5e+02 Score=21.62 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHhhcHHHHHHHHHH
Q 021632 210 LSQKIEDLQEQIYGLEKRNKEYYQMLVNR 238 (310)
Q Consensus 210 l~rKIe~Lq~qIy~lE~rnre~yeql~~~ 238 (310)
+.+.|..|+.+|..+..+|..+-.++.+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777766655554
No 162
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.93 E-value=1.2e+03 Score=27.30 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=73.5
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----------HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhH
Q 021632 123 ILVNQVNEMDHVCNESRRKIELLKSLMELLESERMI----------LVNENVKLGYQVSAVMEENKGLASEAMFMRRKAS 192 (310)
Q Consensus 123 ~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~v----------ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ 192 (310)
....|+++..|+-.-..|+++...+-++-|..-.++ |-.-|.+|+-||-.+.|+...+.. +--|--.-.
T Consensus 407 ~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~ 485 (1243)
T KOG0971|consen 407 KKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQ 485 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344455555555555566676666666666655554 455688888888888887766321 222222122
Q ss_pred HHH-HHHHHhhc------chhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 193 ELA-KCVLRMRE------DYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 193 ELA-rcvlkmre------dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
|-. .+++..|+ -|+. .+-+.|++-|..||+...--..|.|-+.....+..+.-
T Consensus 486 Esn~ele~DLreEld~~~g~~k-el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~ 545 (1243)
T KOG0971|consen 486 ESNRELELDLREELDMAKGARK-ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELT 545 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 24555565 4554 34457888888888888777777776666665555543
No 163
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=23.83 E-value=5.8e+02 Score=23.55 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHH-HHHHH
Q 021632 142 IELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIE-DLQEQ 220 (310)
Q Consensus 142 ieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe-~Lq~q 220 (310)
..++.+|.-+++-||++.-+. .-.+++-|-....-| |.+|.-|||-+-.+..+-+. +. --..|
T Consensus 93 a~VQeEL~r~a~rEReAa~e~------l~~ai~rer~~~~~E----~~ka~~la~qLe~ke~el~~------~d~fykeq 156 (187)
T PF05300_consen 93 AQVQEELARLAQREREAAAEH------LTRAILRERASTEQE----RQKAKQLARQLEEKEAELKK------QDAFYKEQ 156 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhh------hHHHHHHhhhcchhH----HHHHHHHHHHHHhhHHHHHH------HHHHHHHH
Confidence 447778888899999886421 111222222222333 33344455544333332211 11 12679
Q ss_pred HHHHHhhcHHHHHHHH
Q 021632 221 IYGLEKRNKEYYQMLV 236 (310)
Q Consensus 221 Iy~lE~rnre~yeql~ 236 (310)
+.-||++|-++|-+..
T Consensus 157 l~~le~k~~e~yk~t~ 172 (187)
T PF05300_consen 157 LARLEEKNAEFYKVTS 172 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997543
No 164
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=23.58 E-value=6.1e+02 Score=23.72 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhh
Q 021632 147 SLMELLESERMILVNENVKLGYQVSAVMEENKGLA 181 (310)
Q Consensus 147 ~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~a 181 (310)
.-...|+.++-++-.+-..|.-+...+.+++..|.
T Consensus 33 ~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 33 ETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 165
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.44 E-value=92 Score=23.29 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHhhcHHHH
Q 021632 210 LSQKIEDLQEQIYGLEKRNKEYY 232 (310)
Q Consensus 210 l~rKIe~Lq~qIy~lE~rnre~y 232 (310)
|.+.++.||+|+..|+.+-..|-
T Consensus 4 LrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999987766553
No 166
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.14 E-value=4.5e+02 Score=22.02 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 151 LLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 151 vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
.|++|...+.........++..+.++.+.
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLES 35 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 167
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=22.97 E-value=1.3e+03 Score=27.42 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMR 188 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmk 188 (310)
..+-.+.-.|+++..+..++.+.+|.++.-. -++++.-......|+-.|.++-.+|+..-.-++.++++.+....-.|
T Consensus 998 ~~~er~l~dnl~~~~l~~q~~e~~re~~~ld--~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k 1075 (1294)
T KOG0962|consen 998 YQRERNLKDNLTLRNLERKLKELERELSELD--KQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLK 1075 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3444556678888888888887777774332 33444444445555555666666777777777888888888888888
Q ss_pred HhhHHHHHHHH-HhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 189 RKASELAKCVL-RMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 189 r~a~ELArcvl-kmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
+ ||-.--- -....||-|+. ++....-=+-+|-+=++-+--++.+|-...=+-+
T Consensus 1076 ~---eL~~~~~kd~~~nyr~~~i--e~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1076 Q---ELREKDFKDAEKNYRKALI--ELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEI 1129 (1294)
T ss_pred H---HhhhhhhccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 5431111 11227788877 4444444444444333333334455544433333
No 168
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=22.53 E-value=4.2e+02 Score=28.53 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=9.6
Q ss_pred ccccccCCCCCC
Q 021632 299 ADFFNCGLPSCS 310 (310)
Q Consensus 299 ~d~f~cg~p~c~ 310 (310)
.-++++|+|+|.
T Consensus 348 ~~lll~GppG~G 359 (775)
T TIGR00763 348 PILCLVGPPGVG 359 (775)
T ss_pred ceEEEECCCCCC
Confidence 358889999984
No 169
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.44 E-value=7.1e+02 Score=25.32 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=37.5
Q ss_pred HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHH-HHHHhhcchhh
Q 021632 159 LVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAK-CVLRMREDYRV 207 (310)
Q Consensus 159 ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELAr-cvlkmredhrv 207 (310)
|-..|+.|.+-+-+...+-.++-.|---||+||+.|.- +.+-.|.|-|.
T Consensus 165 Lkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrh 214 (389)
T KOG4687|consen 165 LKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRH 214 (389)
T ss_pred HHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCC
Confidence 34567888999999888888899999999999888764 44556665544
No 170
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.39 E-value=4.5e+02 Score=21.67 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 139 RRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
+-||+--=+-+.+|.+|.+-|-+.|..|.-.+..+..-..++..|.--+|.
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344544446667777777777777766666555555444445555555554
No 171
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=22.35 E-value=8e+02 Score=24.60 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=26.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHH
Q 021632 180 LASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLV 236 (310)
Q Consensus 180 ~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~ 236 (310)
+.+-+.++|. |.+|+.-++-.--+.... |+...-..-..+-..|+-+-..|.
T Consensus 227 ~~shI~~Lr~---EV~RLR~qL~~sq~e~~~--k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 227 LSSHIRSLRQ---EVSRLRQQLAASQQEHSE--KMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888 666665555542222111 444443333444445555444443
No 172
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.22 E-value=9.7e+02 Score=25.54 Aligned_cols=100 Identities=24% Similarity=0.307 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHhhhhhhhhhhhhHHHHhhh---hhHHHHHHHHhhHHHHHHHHHhhcchhhh
Q 021632 139 RRKIELLKSLMELLESERMI-------LVNENVKLGYQVSAVMEENKG---LASEAMFMRRKASELAKCVLRMREDYRVC 208 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~v-------ll~Ena~Lg~~~s~~~eEnk~---~asEa~fmkr~a~ELArcvlkmredhrvc 208 (310)
++|+.+++.-|-.|+-.-.+ +.-||+.|-+++..++|-.|+ -|.|++-=.. ..-|-++-+-+ |+-
T Consensus 221 ~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~---rrhrEil~k~e--Rea 295 (502)
T KOG0982|consen 221 ERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEE---RRHREILIKKE--REA 295 (502)
T ss_pred HHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHH--HHH
Confidence 67888888887777764443 578999999999988887776 2222221111 00000000000 111
Q ss_pred HhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 209 ILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 209 ~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
-+ -+|-||.+|..||..|-++..-+.+.-......
T Consensus 296 sl--e~Enlqmr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 296 SL--EKENLQMRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 378889999999999988888777766655544
No 173
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.93 E-value=6.2e+02 Score=26.34 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 108 DDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 108 delvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
+.++.++-..+-......++....+..+++.+..|.=+..-+-....+...+-..|+.+..++..++.+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555444444455555555555555544444444444444555555556667777777666544
No 174
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.52 E-value=7e+02 Score=25.03 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhHHHHhhhhhHH
Q 021632 105 ANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQ-VSAVMEENKGLASE 183 (310)
Q Consensus 105 ~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~-~s~~~eEnk~~asE 183 (310)
.++|.+...+-.+++..+.+.++|-.++++.-+...+++-++..--.+-.+. +.+.+-|-. .+++.++.+.+..+
T Consensus 9 ~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i----~~~~~~~~~~~~~l~~~~~~l~~~ 84 (418)
T TIGR00414 9 NNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI----GKAKGQKKDKIEEIKKELKELKEE 84 (418)
T ss_pred hCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHH
Q 021632 184 AMFMRRKASEL 194 (310)
Q Consensus 184 a~fmkr~a~EL 194 (310)
..-+..+..++
T Consensus 85 ~~~~~~~~~~~ 95 (418)
T TIGR00414 85 LTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHH
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.41 E-value=6.2e+02 Score=23.01 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=44.3
Q ss_pred hhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHH----HHHHHHhhcHHHHHHHHHHHHHHHh
Q 021632 169 QVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQE----QIYGLEKRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 169 ~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~----qIy~lE~rnre~yeql~~~E~e~~~ 244 (310)
++..+..+.+.+-.|.-.+.. .+.+++...++=|+..-- .|-+.|. +...||.+-...-++++.+++++.+
T Consensus 94 rl~~~ek~l~~Lk~e~evL~q---r~~kle~ErdeL~~kf~~--~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQ---RFEKLEQERDELYRKFES--AIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555555555 444444444443333222 3444444 4567888888888899999999988
Q ss_pred hh
Q 021632 245 YE 246 (310)
Q Consensus 245 ~~ 246 (310)
.+
T Consensus 169 vl 170 (201)
T PF13851_consen 169 VL 170 (201)
T ss_pred HH
Confidence 76
No 176
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=21.11 E-value=9.3e+02 Score=24.89 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=47.4
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHh
Q 021632 124 LVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRM 201 (310)
Q Consensus 124 l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkm 201 (310)
+..||..+-..++...-.+..++..++-|+.|-...-.+..++.-+...+.-.+..|..|+.-+|. +|.-+....
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~---eLea~~~~e 360 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS---ELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH---HHHHHHhhh
Confidence 334444444444444556666677777777777777777777777777666666667777777776 665554444
No 177
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.90 E-value=1.1e+03 Score=25.83 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhh
Q 021632 113 ELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMI-LVNENVKLGYQVSAVMEENKGLASEAMFMRRKA 191 (310)
Q Consensus 113 elVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~v-ll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a 191 (310)
+.-+.+-|+..++.+|..--++.-.++++++-|..-++.--+.... -......+|..+.....+++.|..+...++-
T Consensus 229 e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~-- 306 (629)
T KOG0963|consen 229 EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA-- 306 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 192 SELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 192 ~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
-|.. -++..-+||-.||.-++.+...++..+.+.+.+
T Consensus 307 ------------S~~~-----e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 307 ------------SLVE-----EREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred ------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 178
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.80 E-value=5.6e+02 Score=22.20 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=31.5
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhc------------chhhhHhhhhHHHHHHHHHHHHhh
Q 021632 160 VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMRE------------DYRVCILSQKIEDLQEQIYGLEKR 227 (310)
Q Consensus 160 l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmre------------dhrvc~l~rKIe~Lq~qIy~lE~r 227 (310)
..++..+-..+....+....+-.++.-.+..-..+-+...+++. ||-.|+. .+..|+..|..++.+
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~--~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKE--EVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333333333333332 5655555 566666666666544
Q ss_pred c
Q 021632 228 N 228 (310)
Q Consensus 228 n 228 (310)
.
T Consensus 168 ~ 168 (177)
T PF13870_consen 168 V 168 (177)
T ss_pred H
Confidence 3
No 179
>PF15456 Uds1: Up-regulated During Septation
Probab=20.78 E-value=5.5e+02 Score=22.10 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.7
Q ss_pred hHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 208 CILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 208 c~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
-...|||+++..++-.+|.|--+....|..+-+-|
T Consensus 84 ~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~Aav 118 (124)
T PF15456_consen 84 AESDRKCEELAQELWKLENRLAEVRQRLLEHTAAV 118 (124)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999998888765543
No 180
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.73 E-value=1.5e+03 Score=27.13 Aligned_cols=8 Identities=25% Similarity=0.123 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 021632 149 MELLESER 156 (310)
Q Consensus 149 l~vLesEr 156 (310)
+..|+.++
T Consensus 323 L~kLEkQa 330 (1486)
T PRK04863 323 ESDLEQDY 330 (1486)
T ss_pred HHHHHHHH
Confidence 33333333
No 181
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=20.29 E-value=3.8e+02 Score=29.22 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021632 139 RRKIELLKSLMELLESERMILVNENVKLGYQ 169 (310)
Q Consensus 139 ~rkieLlk~ll~vLesEr~vll~Ena~Lg~~ 169 (310)
..+++.||..|..||-||.=|++|++.+-..
T Consensus 32 ~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~ 62 (654)
T PF09798_consen 32 EEELNKLKSEVQKLEDEKKFLNNELRSLSSS 62 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4588899999999999999998888876543
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.26 E-value=5.1e+02 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQ 240 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~ 240 (310)
.||.++-+|..+.+|.|++|..|.++-.
T Consensus 76 ~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 76 QIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999988754
No 183
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.12 E-value=1.3e+03 Score=26.29 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021632 106 NIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMI 158 (310)
Q Consensus 106 ~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~v 158 (310)
+.+.+..++-.+......+..+....|..+.....+++-++..+..++.+-..
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 653 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQ 653 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555555555566555555555555555555444333
Done!