Query 021632
Match_columns 310
No_of_seqs 83 out of 85
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 06:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 93.9 2.1 7.2E-05 37.9 14.8 16 289-304 209-225 (256)
2 3na7_A HP0958; flagellar bioge 88.4 13 0.00044 32.8 15.9 84 109-192 22-107 (256)
3 1c1g_A Tropomyosin; contractIl 87.9 9.2 0.00031 30.7 17.6 26 112-137 6-31 (284)
4 3oja_B Anopheles plasmodium-re 87.5 9 0.00031 36.3 13.1 35 213-247 545-579 (597)
5 1i84_S Smooth muscle myosin he 81.8 3.5 0.00012 43.8 8.3 23 25-47 786-808 (1184)
6 3hnw_A Uncharacterized protein 81.4 9.9 0.00034 31.7 9.2 78 111-188 58-137 (138)
7 3a7p_A Autophagy protein 16; c 79.8 24 0.00083 30.5 11.3 82 110-193 59-140 (152)
8 1i84_S Smooth muscle myosin he 79.5 5.4 0.00018 42.4 8.7 12 36-47 823-834 (1184)
9 3thf_A Protein shroom; coiled- 79.0 35 0.0012 30.5 12.7 100 142-246 21-138 (190)
10 2dfs_A Myosin-5A; myosin-V, in 77.4 22 0.00075 38.1 12.5 28 215-242 1019-1046(1080)
11 2jee_A YIIU; FTSZ, septum, coi 75.5 27 0.00093 27.4 9.7 24 132-155 12-35 (81)
12 3oja_B Anopheles plasmodium-re 74.2 36 0.0012 32.2 11.9 32 213-244 538-569 (597)
13 1ykh_B RNA polymerase II holoe 70.2 42 0.0014 27.6 10.0 73 104-176 56-128 (132)
14 1yke_B RNA polymerase II holoe 70.1 30 0.001 29.3 9.3 76 104-179 56-131 (151)
15 3o0z_A RHO-associated protein 63.0 78 0.0027 27.7 14.0 30 213-242 91-120 (168)
16 3hnw_A Uncharacterized protein 62.9 33 0.0011 28.5 8.1 13 213-225 118-130 (138)
17 2jee_A YIIU; FTSZ, septum, coi 62.3 55 0.0019 25.6 8.9 41 149-189 8-48 (81)
18 3vkg_A Dynein heavy chain, cyt 56.0 1.8E+02 0.0062 35.2 15.2 23 30-52 1861-1883(3245)
19 3q8t_A Beclin-1; autophagy, AT 48.6 95 0.0032 24.2 11.3 79 106-184 5-83 (96)
20 3s4r_A Vimentin; alpha-helix, 48.5 92 0.0031 24.2 8.0 65 169-244 24-88 (93)
21 3i00_A HIP-I, huntingtin-inter 48.3 86 0.0029 25.7 8.1 70 116-188 19-110 (120)
22 3he4_A Synzip6; heterodimeric 45.6 20 0.00069 26.2 3.5 39 160-198 16-54 (56)
23 3a7o_A Autophagy protein 16; c 40.9 1E+02 0.0034 24.0 7.0 56 121-176 20-75 (75)
24 1gmj_A ATPase inhibitor; coile 40.6 49 0.0017 26.2 5.3 48 179-231 26-77 (84)
25 3he5_A Synzip1; heterodimeric 40.6 63 0.0021 23.1 5.3 42 148-189 4-45 (49)
26 2fxo_A Myosin heavy chain, car 40.2 1.4E+02 0.0049 23.9 14.3 34 212-245 83-116 (129)
27 3ol1_A Vimentin; structural ge 40.0 1.4E+02 0.0049 23.8 10.4 31 104-134 19-49 (119)
28 3vkg_A Dynein heavy chain, cyt 39.8 6E+02 0.02 31.0 16.5 25 114-138 1929-1953(3245)
29 2b9c_A Striated-muscle alpha t 38.3 1.8E+02 0.006 24.4 12.0 70 167-238 51-120 (147)
30 1dh3_A Transcription factor CR 35.8 27 0.00092 24.9 2.9 30 214-243 24-53 (55)
31 1ci6_A Transcription factor AT 34.6 57 0.002 23.6 4.5 33 213-245 24-56 (63)
32 3ghg_A Fibrinogen alpha chain; 34.0 95 0.0032 31.8 7.4 60 120-179 103-163 (562)
33 2dgc_A Protein (GCN4); basic d 33.5 41 0.0014 24.5 3.6 31 213-243 31-61 (63)
34 3m9b_A Proteasome-associated A 33.4 35 0.0012 31.5 3.9 61 180-243 22-85 (251)
35 4dyl_A Tyrosine-protein kinase 32.5 89 0.003 29.2 6.6 43 116-158 299-341 (406)
36 2dfs_A Myosin-5A; myosin-V, in 32.1 4.1E+02 0.014 28.5 12.2 9 36-44 844-852 (1080)
37 1f5n_A Interferon-induced guan 31.9 4E+02 0.014 26.6 12.0 96 107-230 489-585 (592)
38 2oqq_A Transcription factor HY 28.9 61 0.0021 22.9 3.6 31 149-179 5-35 (42)
39 1jnm_A Proto-oncogene C-JUN; B 27.4 86 0.003 22.3 4.4 33 213-245 23-55 (62)
40 2dq0_A Seryl-tRNA synthetase; 27.0 94 0.0032 30.0 5.9 14 106-119 10-23 (455)
41 1wle_A Seryl-tRNA synthetase; 26.4 2.5E+02 0.0086 27.6 8.9 16 105-120 48-63 (501)
42 1jnm_A Proto-oncogene C-JUN; B 25.8 97 0.0033 22.0 4.4 33 147-179 22-54 (62)
43 2yy0_A C-MYC-binding protein; 25.8 66 0.0023 22.9 3.5 28 155-182 20-47 (53)
44 1uii_A Geminin; human, DNA rep 25.7 1.4E+02 0.0049 23.5 5.7 29 160-188 45-73 (83)
45 3m0a_A TNF receptor-associated 25.6 86 0.0029 22.3 4.1 34 193-226 27-61 (66)
46 3swk_A Vimentin; cytoskeleton, 25.6 2.2E+02 0.0077 21.7 8.7 24 107-130 2-25 (86)
47 3qne_A Seryl-tRNA synthetase, 25.4 1.3E+02 0.0044 29.8 6.6 34 111-144 32-65 (485)
48 1gd2_E Transcription factor PA 24.6 1.4E+02 0.0047 22.4 5.2 39 141-179 30-68 (70)
49 4h22_A Leucine-rich repeat fli 23.9 2.2E+02 0.0077 23.2 6.7 60 161-222 23-82 (103)
50 1x79_B RAB GTPase binding effe 23.9 3E+02 0.01 22.5 8.6 46 192-242 30-75 (112)
51 2wt7_A Proto-oncogene protein 23.5 1.2E+02 0.004 21.8 4.5 33 213-245 24-56 (63)
52 1t2k_D Cyclic-AMP-dependent tr 22.9 1.3E+02 0.0043 21.3 4.5 33 213-245 23-55 (61)
53 1t2k_D Cyclic-AMP-dependent tr 22.5 1.2E+02 0.0042 21.4 4.4 33 147-179 22-54 (61)
54 3m0d_C TNF receptor-associated 22.1 1.1E+02 0.0037 22.2 4.1 33 193-225 28-61 (65)
55 3uux_B Mitochondrial division 22.0 3.6E+02 0.012 24.9 8.4 73 106-178 157-229 (242)
56 3lss_A Seryl-tRNA synthetase; 21.8 3E+02 0.01 27.2 8.4 38 110-147 35-72 (484)
57 1gu4_A CAAT/enhancer binding p 21.6 2.4E+02 0.0083 21.5 6.2 44 133-176 21-65 (78)
58 1ic2_A Tropomyosin alpha chain 21.0 2.6E+02 0.0089 20.7 9.4 29 210-238 46-74 (81)
59 3mq9_A Bone marrow stromal ant 20.5 5E+02 0.017 23.8 11.9 30 216-245 440-469 (471)
60 2yy0_A C-MYC-binding protein; 20.2 70 0.0024 22.8 2.7 24 213-236 27-50 (53)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.89 E-value=2.1 Score=37.89 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=10.6
Q ss_pred CchHHHhhhccc-cccc
Q 021632 289 SSNWWERVKKAD-FFNC 304 (310)
Q Consensus 289 ~~~~w~~vk~~d-~f~c 304 (310)
+|..+..|+..| +++|
T Consensus 209 ppq~~~~i~~~~~Iv~C 225 (256)
T 3na7_A 209 NDKIYTEVLTSGDMITC 225 (256)
T ss_dssp CHHHHHHHHHSSSCEEC
T ss_pred CHHHHHHHHCCCCEEEC
Confidence 567777777654 5555
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.39 E-value=13 Score=32.85 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH--HHhhhhhHHHHH
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVM--EENKGLASEAMF 186 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~--eEnk~~asEa~f 186 (310)
.+...+-..-.+.+.+.+++.....++......++=++..+..++.+...+-....+..-++..+- .|..++..|.-+
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~ 101 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDI 101 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444444444444333333333332221 122235555556
Q ss_pred HHHhhH
Q 021632 187 MRRKAS 192 (310)
Q Consensus 187 mkr~a~ 192 (310)
++++-.
T Consensus 102 ~~~~i~ 107 (256)
T 3na7_A 102 AKERSN 107 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.93 E-value=9.2 Score=30.68 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=11.0
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhhhhh
Q 021632 112 AELVAKNVESEILVNQVNEMDHVCNE 137 (310)
Q Consensus 112 aelVa~nve~d~l~del~~~er~~~E 137 (310)
....+...+.+.+..++...+..+.+
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~ 31 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKA 31 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.55 E-value=9 Score=36.26 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYEN 247 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~~ 247 (310)
+++.|+.+|....++-.+..+++..+.+++++...
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666777777777778777777764
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.84 E-value=3.5 Score=43.79 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=14.4
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHH
Q 021632 25 WYYQKRPQLLALLKDLYNGYITL 47 (310)
Q Consensus 25 mYYqkRPeLi~~vee~yr~YraL 47 (310)
+-..+...++..++-.+|+|.+-
T Consensus 786 ~r~~~l~~~~~~iQ~~~Rg~l~R 808 (1184)
T 1i84_S 786 ERDLKITDVIIAFQAQCRGYLAR 808 (1184)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777777777777543
No 6
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.40 E-value=9.9 Score=31.71 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=53.7
Q ss_pred HHHHHHHhh--hhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHH
Q 021632 111 VAELVAKNV--ESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMR 188 (310)
Q Consensus 111 vaelVa~nv--e~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmk 188 (310)
++=+.|.|+ |+-.+..+...+++++.+-.++|.-+|.-+..+..+-+.+-.++..|--.+..++.+++.+.+|+.+-+
T Consensus 58 ~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~~ 137 (138)
T 3hnw_A 58 RTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDSK 137 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555554 455556666666777777677777777777777777777777777777778888888777777766543
No 7
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.79 E-value=24 Score=30.50 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 110 LVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 110 lvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
+|+..-+--.....|..++...++++..-...++-..++++.|..|-.+|--++-.++-++..+++||+.|-. ..|++
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~--RWM~r 136 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA--RWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 5555544434445555566555555555555666666888888888888877888888899999999987542 34444
Q ss_pred hhHH
Q 021632 190 KASE 193 (310)
Q Consensus 190 ~a~E 193 (310)
++.|
T Consensus 137 k~qE 140 (152)
T 3a7p_A 137 TEKE 140 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.53 E-value=5.4 Score=42.44 Aligned_cols=12 Identities=0% Similarity=0.182 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 021632 36 LLKDLYNGYITL 47 (310)
Q Consensus 36 ~vee~yr~YraL 47 (310)
.++-.+|+|..+
T Consensus 823 ~iQ~~~r~~~~~ 834 (1184)
T 1i84_S 823 CIQYNVRSFMNV 834 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555444
No 9
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=79.00 E-value=35 Score=30.47 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhHHHHhhhhhHHHHHHHH-------------hhHHHHHHHHHhhc--
Q 021632 142 IELLKSLMELLESERMIL---VNENVKLGYQVSAVMEENKGLASEAMFMRR-------------KASELAKCVLRMRE-- 203 (310)
Q Consensus 142 ieLlk~ll~vLesEr~vl---l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr-------------~a~ELArcvlkmre-- 203 (310)
|+.+..-|.+|..|+..+ ...|+.||..|.++..+.=.-+--.+|..- -.+.|||..-.+..
T Consensus 21 i~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~~ 100 (190)
T 3thf_A 21 IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETRQ 100 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCh
Confidence 344556678888999887 677999999999988876442222233221 23455655544433
Q ss_pred chhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 204 DYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 204 dhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
+-|..+. .|..-|+.|--.+ +++-+-+.|+|.-|-+..
T Consensus 101 ~Er~sL~-~K~~~L~~Q~EDA----keLKe~ldRRe~~V~~iL 138 (190)
T 3thf_A 101 QERGALE-SKRDLLYEQMEEA----QRLKSDIERRGVSIAGLL 138 (190)
T ss_dssp HHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3355555 4777788777665 566677778887776654
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.38 E-value=22 Score=38.07 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 215 EDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 215 e~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
++||.+|..|++-|..+-+|+...+..+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776666666433
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.52 E-value=27 Score=27.36 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=12.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q 021632 132 DHVCNESRRKIELLKSLMELLESE 155 (310)
Q Consensus 132 er~~~Es~rkieLlk~ll~vLesE 155 (310)
|.+.+.+=.+|.||+-.++-|+.+
T Consensus 12 E~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666655554444433
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.16 E-value=36 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~ 244 (310)
.++.|+.++..+|.+.++-.+++....+|...
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34556677777777777777766666655543
No 13
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=70.22 E-value=42 Score=27.61 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=54.2
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
...++++..++|.+.=+-+.|.+-|=.++.--.+-.++|.-|..-+...+.|+...+.|.-+|.-++..+...
T Consensus 56 ~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 56 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999988766655555566777777777777777777777776666666655443
No 14
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=70.12 E-value=30 Score=29.30 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=59.9
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
...++++..++|.+.=+-+.|.+-|=.++.--.+-.++|.-|..-+...+.|+...+.|.-+|.-+|..+......
T Consensus 56 ~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 56 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998766655555567888788888888888888888888887777777666433
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=63.02 E-value=78 Score=27.67 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
-|-+||++|.+|+.-.+..-+.+.+.+.+.
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~ 120 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGER 120 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777755555555444444443
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.88 E-value=33 Score=28.52 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLE 225 (310)
Q Consensus 213 KIe~Lq~qIy~lE 225 (310)
+|..||.+|..||
T Consensus 118 ~~~~l~~~~~~le 130 (138)
T 3hnw_A 118 EINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.27 E-value=55 Score=25.65 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 149 MELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 149 l~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
++.||.=...++..+.-|--.+..+.++|..++.|.--++.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444444444444444
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.97 E-value=1.8e+02 Score=35.21 Aligned_cols=23 Identities=13% Similarity=-0.087 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 021632 30 RPQLLALLKDLYNGYITLLDRCR 52 (310)
Q Consensus 30 RPeLi~~vee~yr~YraLAeRYd 52 (310)
|..++.++-.+|.+-..++++|-
T Consensus 1861 ~~~~~~~~~~iH~sv~~~s~~~~ 1883 (3245)
T 3vkg_A 1861 RDAVVSSLVYIHQTIGEANIRLL 1883 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888888773
No 19
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.61 E-value=95 Score=24.24 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHH
Q 021632 106 NIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEA 184 (310)
Q Consensus 106 ~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa 184 (310)
+++.+..+|...-.+-..|+.+|..+|+.-......|+-+..-...|+.+-.....+=-.+-..+...+++...+..-.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888889999988888888888888888888777777766665554445555555555544443333
No 20
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.52 E-value=92 Score=24.18 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=41.9
Q ss_pred hhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 021632 169 QVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKE 244 (310)
Q Consensus 169 ~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~ 244 (310)
+|-.++.+|+.|.++...++.+ ....+...|-. -|.+|+.||-.+..-+-.+--++.....++.+
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~------~~~~~~~~ye~-----~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQ------GKSRLGDLYEE-----EMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc------cCCCcHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888777653 22334444443 47799999988886655555555555444443
No 21
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.26 E-value=86 Score=25.70 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhhhhhhh---------------H
Q 021632 116 AKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMI-------LVNENVKLGYQVSA---------------V 173 (310)
Q Consensus 116 a~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~v-------ll~Ena~Lg~~~s~---------------~ 173 (310)
..--+.+.|..++ ++...|+.+-|.=++.=|..|+.|-.. ++.||=.|...+.. .
T Consensus 19 ~Lkreie~lk~el---e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~ 95 (120)
T 3i00_A 19 RLYREISGLKAQL---ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLS 95 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3445566666666 455667766666666666666655444 23444444433332 2
Q ss_pred HHHhhhhhHHHHHHH
Q 021632 174 MEENKGLASEAMFMR 188 (310)
Q Consensus 174 ~eEnk~~asEa~fmk 188 (310)
..|-|+-++|..|.|
T Consensus 96 e~E~kAqa~Eerf~K 110 (120)
T 3i00_A 96 EIERKAQANEQRYSK 110 (120)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455567777765
No 22
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.56 E-value=20 Score=26.17 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=28.3
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHH
Q 021632 160 VNENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCV 198 (310)
Q Consensus 160 l~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcv 198 (310)
|.|||+|+--+..++.+|+.+.....++-+-.+-|-|-|
T Consensus 16 lkenaklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 16 LKENAKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 678888888888888888887777777777444444433
No 23
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=40.94 E-value=1e+02 Score=24.04 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=39.0
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 121 SEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 121 ~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
--.|+.+|...|++.......|.|.-+=++.|--|.+-+==||--|+-|++.+++|
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 33566777666666666666777777888889999888877888899999887764
No 24
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.57 E-value=49 Score=26.18 Aligned_cols=48 Identities=27% Similarity=0.275 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHhhHH-HHHHHHHhhc---chhhhHhhhhHHHHHHHHHHHHhhcHHH
Q 021632 179 GLASEAMFMRRKASE-LAKCVLRMRE---DYRVCILSQKIEDLQEQIYGLEKRNKEY 231 (310)
Q Consensus 179 ~~asEa~fmkr~a~E-LArcvlkmre---dhrvc~l~rKIe~Lq~qIy~lE~rnre~ 231 (310)
++|.|..|++++..| |+.+=-++-+ .|.. .|+.||.+|....++-+++
T Consensus 26 EaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~-----ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 26 EQAEEERYFRARAKEQLAALKKHKENEISHHAK-----EIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 478888888875443 3332212212 3333 6777887776666665554
No 25
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.56 E-value=63 Score=23.05 Aligned_cols=42 Identities=29% Similarity=0.186 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHH
Q 021632 148 LMELLESERMILVNENVKLGYQVSAVMEENKGLASEAMFMRR 189 (310)
Q Consensus 148 ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~fmkr 189 (310)
||..||.|.-.|-+||-.|--+--+-.+-.+-+..|..++|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrk 45 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443332222222224444445544
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.25 E-value=1.4e+02 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 212 QKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 212 rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.+|.+|+.++...|.+|..+-..--+.+.++.+.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777666655666555443
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.00 E-value=1.4e+02 Score=23.82 Aligned_cols=31 Identities=3% Similarity=0.055 Sum_probs=20.8
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhh
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHV 134 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~ 134 (310)
...|.++..++.....+...|.-++..+.-.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~ 49 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAED 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888877777777666544333
No 28
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.85 E-value=6e+02 Score=31.00 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=13.5
Q ss_pred HHHHhhhhHHHHHHhhhhhhhhhhh
Q 021632 114 LVAKNVESEILVNQVNEMDHVCNES 138 (310)
Q Consensus 114 lVa~nve~d~l~del~~~er~~~Es 138 (310)
|..+..+++.|..+|..++.++.+.
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665555555444
No 29
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.27 E-value=1.8e+02 Score=24.39 Aligned_cols=70 Identities=17% Similarity=0.021 Sum_probs=40.1
Q ss_pred hhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHH
Q 021632 167 GYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNR 238 (310)
Q Consensus 167 g~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~ 238 (310)
.-++..+....|++-.-|...=++..|.+|-+.-.-.|.-.+-. +.+..+++|..||..-+..-..|-..
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraee--Rae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE--RAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555555554444455556777888876666665554444 56666666666666555555444443
No 30
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.82 E-value=27 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 214 IEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 214 Ie~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
|++|+.++..|+.-|..+..++.....++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 779999999999999999998887766553
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.61 E-value=57 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
+++.|+.++..|+..|.++-.++...+.|+...
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999998887543
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.05 E-value=95 Score=31.78 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=37.5
Q ss_pred hhHHHHHHhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 120 ESEILVNQVN-EMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 120 e~d~l~del~-~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
+.+....|++ +++|+.+...++|.=+...+.+|+.=...|+-++-||+--|.+-++.=|+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444555555 55666655566666556666667666666677777777766666666555
No 33
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.53 E-value=41 Score=24.54 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
.|..|+.++..|+..|..+..++..+..++.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999998888887776653
No 34
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.35 E-value=35 Score=31.52 Aligned_cols=61 Identities=25% Similarity=0.229 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhhcc---hhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 021632 180 LASEAMFMRRKASELAKCVLRMRED---YRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVK 243 (310)
Q Consensus 180 ~asEa~fmkr~a~ELArcvlkmred---hrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~ 243 (310)
++.+..++.+ |++.+.-+..+- .+.-=..+++..|+.|+..|+.+|+.+-+++.....|+.
T Consensus 22 ~~~~~~~~~~---e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~ 85 (251)
T 3m9b_A 22 DAAELEQLRR---EAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLL 85 (251)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHH---HHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667776 444332222111 111111457888999999999888866665555554443
No 35
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.51 E-value=89 Score=29.16 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021632 116 AKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMI 158 (310)
Q Consensus 116 a~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~v 158 (310)
-.++-++.|.+.|..++.++.++.+.+.-....|+.|+..+..
T Consensus 299 ~~e~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~ 341 (406)
T 4dyl_A 299 LNELTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRN 341 (406)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346678899999999999999988888888888887776654
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.11 E-value=4.1e+02 Score=28.53 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 021632 36 LLKDLYNGY 44 (310)
Q Consensus 36 ~vee~yr~Y 44 (310)
.++-.+|+|
T Consensus 844 ~IQs~~Rg~ 852 (1080)
T 2dfs_A 844 ALQALLRGY 852 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 37
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.85 E-value=4e+02 Score=26.63 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHH
Q 021632 107 IDDLVAELVAKNVESEILVNQVNEMDHVCNESRR-KIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKGLASEAM 185 (310)
Q Consensus 107 idelvaelVa~nve~d~l~del~~~er~~~Es~r-kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~~asEa~ 185 (310)
+.+-.+...++--+...|.....+.++....-.+ --|=.+.|.+.||.||..++ ..+.-.+.+-+.|-+.+..|-
T Consensus 489 ~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~---~e~~~~~~~~~~~~~~~~~~g- 564 (592)
T 1f5n_A 489 IEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL---KEQERTLALKLQEQEQLLKEG- 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHH
Q 021632 186 FMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKE 230 (310)
Q Consensus 186 fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre 230 (310)
...|+..|+++|..|..+++.
T Consensus 565 ------------------------~~~~~~~~~~ei~~l~~~~~~ 585 (592)
T 1f5n_A 565 ------------------------FQKESRIMKNEIQDLQTKMRR 585 (592)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHC--
T ss_pred ------------------------HHHHHHHHHHHHHHHHHhhcc
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.90 E-value=61 Score=22.86 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 149 MELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 149 l~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
|.-||...--|=..|+.|+-++|.++-||.-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556776666778899999999999998854
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.39 E-value=86 Score=22.29 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.|..|+.++..|+..|..+-.++.....|+...
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999988888888887544
No 40
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.99 E-value=94 Score=30.02 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHhh
Q 021632 106 NIDDLVAELVAKNV 119 (310)
Q Consensus 106 ~idelvaelVa~nv 119 (310)
++|.+...+..++.
T Consensus 10 n~~~~~~~~~~R~~ 23 (455)
T 2dq0_A 10 NPELVKNDLIKRGE 23 (455)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhCC
Confidence 44555555555544
No 41
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.42 E-value=2.5e+02 Score=27.64 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=8.5
Q ss_pred cChhHHHHHHHHHhhh
Q 021632 105 ANIDDLVAELVAKNVE 120 (310)
Q Consensus 105 ~~idelvaelVa~nve 120 (310)
.++|.+...+-.++.+
T Consensus 48 ~n~~~v~~~l~~R~~~ 63 (501)
T 1wle_A 48 AYPEDAARALDLRKGE 63 (501)
T ss_dssp HSHHHHHHHHHHHTCS
T ss_pred hCHHHHHHHHHHcCCC
Confidence 4555555555555543
No 42
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.76 E-value=97 Score=22.03 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 147 SLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 147 ~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
.-+..|+.+...|-.+|..|...++.+.+|+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777788877777777776554
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.75 E-value=66 Score=22.93 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHhhhhhH
Q 021632 155 ERMILVNENVKLGYQVSAVMEENKGLAS 182 (310)
Q Consensus 155 Er~vll~Ena~Lg~~~s~~~eEnk~~as 182 (310)
|-++|..||+.|-.++..+.+++.++.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555433
No 44
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.73 E-value=1.4e+02 Score=23.50 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=17.8
Q ss_pred HhhhhhhhhhhhhHHHHhhhhhHHHHHHH
Q 021632 160 VNENVKLGYQVSAVMEENKGLASEAMFMR 188 (310)
Q Consensus 160 l~Ena~Lg~~~s~~~eEnk~~asEa~fmk 188 (310)
|.||-.|--.+..+.+|+..+-.|..-+|
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777677776666666544444444
No 45
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=25.64 E-value=86 Score=22.27 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHhhc-chhhhHhhhhHHHHHHHHHHHHh
Q 021632 193 ELAKCVLRMRE-DYRVCILSQKIEDLQEQIYGLEK 226 (310)
Q Consensus 193 ELArcvlkmre-dhrvc~l~rKIe~Lq~qIy~lE~ 226 (310)
++.+|..+++. .|+-+....+|+.|++++..|+.
T Consensus 27 ~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 27 EVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 56666666666 46666666788888888877763
No 46
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.57 E-value=2.2e+02 Score=21.66 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhhh
Q 021632 107 IDDLVAELVAKNVESEILVNQVNE 130 (310)
Q Consensus 107 idelvaelVa~nve~d~l~del~~ 130 (310)
|.++..++.....+...+.-|+..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn 25 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDN 25 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456666666666666666666543
No 47
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.39 E-value=1.3e+02 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHH
Q 021632 111 VAELVAKNVESEILVNQVNEMDHVCNESRRKIEL 144 (310)
Q Consensus 111 vaelVa~nve~d~l~del~~~er~~~Es~rkieL 144 (310)
+.++++.+-++-.+..++..+..+.|+.+++|.-
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554444555555555543
No 48
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.57 E-value=1.4e+02 Score=22.45 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 141 KIELLKSLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 141 kieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
.|.-|..-|..|+.+-..+..||..|-..+..+..|+..
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666777777777778888887777777777654
No 49
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.90 E-value=2.2e+02 Score=23.16 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHhhcchhhhHhhhhHHHHHHHHH
Q 021632 161 NENVKLGYQVSAVMEENKGLASEAMFMRRKASELAKCVLRMREDYRVCILSQKIEDLQEQIY 222 (310)
Q Consensus 161 ~Ena~Lg~~~s~~~eEnk~~asEa~fmkr~a~ELArcvlkmredhrvc~l~rKIe~Lq~qIy 222 (310)
||...|-|.|-.+-...-+..-...-++|+..|..|-+-..+..|.+ |.+.+..|++||.
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~--L~~~~~~lk~~L~ 82 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSI--LQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.90 E-value=3e+02 Score=22.53 Aligned_cols=46 Identities=24% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcchhhhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 021632 192 SELAKCVLRMREDYRVCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQV 242 (310)
Q Consensus 192 ~ELArcvlkmredhrvc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~ 242 (310)
.+|-.+.-..++||.. +|..|+.+|...|..-.++-......-..+
T Consensus 30 ~~Le~~w~~k~E~~k~-----qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 30 QELEDFIKQSSEDSSH-----QISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888889999966 666777777777766666555444443333
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.54 E-value=1.2e+02 Score=21.76 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.|..||.++..|+..|..+-..+.....|+...
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999888888877777544
No 52
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.89 E-value=1.3e+02 Score=21.30 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.|+.||.++..|+..|..+-..+.....|+...
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888777777776543
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.51 E-value=1.2e+02 Score=21.37 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh
Q 021632 147 SLMELLESERMILVNENVKLGYQVSAVMEENKG 179 (310)
Q Consensus 147 ~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk~ 179 (310)
.-+..|+.+...|-.+|..|-..++.+.+|+..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666665544
No 54
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=22.10 E-value=1.1e+02 Score=22.24 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHHHHHHhhc-chhhhHhhhhHHHHHHHHHHHH
Q 021632 193 ELAKCVLRMRE-DYRVCILSQKIEDLQEQIYGLE 225 (310)
Q Consensus 193 ELArcvlkmre-dhrvc~l~rKIe~Lq~qIy~lE 225 (310)
+++++...++. +++-+.--.+|+.|++++..+|
T Consensus 28 eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 28 EVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44555555554 2444444557888888877776
No 55
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.96 E-value=3.6e+02 Score=24.87 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=54.0
Q ss_pred ChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHhh
Q 021632 106 NIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEENK 178 (310)
Q Consensus 106 ~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eEnk 178 (310)
..+.|.-++.+..|.+.....||.+++...+.....-+++-.=|+.||.+-.-|=++...+.-|+.-++|+.-
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 3457888899999999999999988888877776655666666777777776676666677777776666543
No 56
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.84 E-value=3e+02 Score=27.17 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 021632 110 LVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKS 147 (310)
Q Consensus 110 lvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ 147 (310)
++.++++..-++-.+..++..+-.+.|+.+++|.-+|.
T Consensus 35 ~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 35 IVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666777777777765544
No 57
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.63 E-value=2.4e+02 Score=21.46 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=22.8
Q ss_pred hhhhhhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 133 HVCNESRRKIELLKSLM-ELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 133 r~~~Es~rkieLlk~ll-~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
+..|+|.++..-....- +.++..-..|-.||..|-..|..+..|
T Consensus 21 ~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 21 ERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655444333222 223333333567777777777755544
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.98 E-value=2.6e+02 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHhhcHHHHHHHHHH
Q 021632 210 LSQKIEDLQEQIYGLEKRNKEYYQMLVNR 238 (310)
Q Consensus 210 l~rKIe~Lq~qIy~lE~rnre~yeql~~~ 238 (310)
|.|||..|+..+-.++++-......|+..
T Consensus 46 L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 46 LQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777777777766655555443
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.49 E-value=5e+02 Score=23.82 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 021632 216 DLQEQIYGLEKRNKEYYQMLVNREQQVKEY 245 (310)
Q Consensus 216 ~Lq~qIy~lE~rnre~yeql~~~E~e~~~~ 245 (310)
.-|++|..||-...+++.+|...++||++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 440 QGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666655666677788888888764
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.24 E-value=70 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhhcHHHHHHHH
Q 021632 213 KIEDLQEQIYGLEKRNKEYYQMLV 236 (310)
Q Consensus 213 KIe~Lq~qIy~lE~rnre~yeql~ 236 (310)
..++|+.+|..|.+++.++..+++
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777777666554
Done!