Query 021632
Match_columns 310
No_of_seqs 83 out of 85
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 06:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021632.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021632hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ykhb1 a.252.1.1 (B:2-130) RN 61.1 31 0.0023 26.4 9.6 73 104-176 55-127 (129)
2 d2p90a1 c.56.8.1 (A:6-274) Hyp 27.6 39 0.0029 27.5 5.2 53 109-161 214-266 (269)
3 d1g8ea_ a.145.1.1 (A:) Flagell 26.4 24 0.0018 26.7 3.3 22 30-51 3-24 (98)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.1 52 0.0038 23.9 5.2 40 207-246 90-129 (133)
5 d1q08a_ a.6.1.3 (A:) Transcrip 22.3 1.2E+02 0.0087 21.1 7.1 18 209-226 43-60 (94)
6 d2bmwa2 c.25.1.1 (A:142-303) F 17.7 13 0.00093 26.8 0.0 12 297-308 113-124 (162)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 17.0 1.2E+02 0.0085 20.8 5.3 24 143-166 55-78 (88)
8 d1qvra2 c.37.1.20 (A:149-535) 16.3 3.1E+02 0.023 23.5 11.5 40 124-163 236-276 (387)
9 d1cqxa3 c.25.1.5 (A:262-403) F 16.0 13 0.00094 26.6 -0.3 13 296-308 99-111 (142)
10 d1seta1 a.2.7.1 (A:1-110) Sery 15.9 1.8E+02 0.013 20.4 6.8 26 105-132 9-34 (110)
No 1
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.11 E-value=31 Score=26.41 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=50.6
Q ss_pred hcChhHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 021632 104 SANIDDLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVNENVKLGYQVSAVMEE 176 (310)
Q Consensus 104 ~~~idelvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~Ena~Lg~~~s~~~eE 176 (310)
...++++..+++-+.=+-+.|.+-|=-++---.+-..+|.=|..-+...+-|+...+.+.-.|.-++.++..+
T Consensus 55 ~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~ 127 (129)
T d1ykhb1 55 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999988889998888544433333345666666666667777777777766666666665543
No 2
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=27.56 E-value=39 Score=27.51 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021632 109 DLVAELVAKNVESEILVNQVNEMDHVCNESRRKIELLKSLMELLESERMILVN 161 (310)
Q Consensus 109 elvaelVa~nve~d~l~del~~~er~~~Es~rkieLlk~ll~vLesEr~vll~ 161 (310)
+...++.-.+++.+.|.++..++|+++++.-...+=+++.|..||.+.+..++
T Consensus 214 ~~l~~~~gl~id~~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~yD~~~~ 266 (269)
T d2p90a1 214 QSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELE 266 (269)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCChHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhHhhhhh
Confidence 34566777788888999999999999998887777778899999998886544
No 3
>d1g8ea_ a.145.1.1 (A:) Flagellar transcriptional activator FlhD {Escherichia coli [TaxId: 562]}
Probab=26.41 E-value=24 Score=26.70 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh
Q 021632 30 RPQLLALLKDLYNGYITLLDRC 51 (310)
Q Consensus 30 RPeLi~~vee~yr~YraLAeRY 51 (310)
.++++..+.|++.+|--||.|-
T Consensus 3 ~~~ll~eI~e~NLsYLlLAQrl 24 (98)
T d1g8ea_ 3 TSELLKHIYDINLSYLLLAQRL 24 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHH
Confidence 4789999999999999999997
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.07 E-value=52 Score=23.86 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=29.9
Q ss_pred hhHhhhhHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhh
Q 021632 207 VCILSQKIEDLQEQIYGLEKRNKEYYQMLVNREQQVKEYE 246 (310)
Q Consensus 207 vc~l~rKIe~Lq~qIy~lE~rnre~yeql~~~E~e~~~~~ 246 (310)
+.++.++|..|+.+|..++..-+...+++...+.++.+..
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888888888888888888888887777776653
No 5
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=22.33 E-value=1.2e+02 Score=21.15 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=13.7
Q ss_pred HhhhhHHHHHHHHHHHHh
Q 021632 209 ILSQKIEDLQEQIYGLEK 226 (310)
Q Consensus 209 ~l~rKIe~Lq~qIy~lE~ 226 (310)
++..||..++.||..|+.
T Consensus 43 l~~~kl~~i~~kI~~L~~ 60 (94)
T d1q08a_ 43 IVQERLQEVEARIAELQS 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788888888888764
No 6
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=17.66 E-value=13 Score=26.76 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=9.1
Q ss_pred hcccccccCCCC
Q 021632 297 KKADFFNCGLPS 308 (310)
Q Consensus 297 k~~d~f~cg~p~ 308 (310)
.+..+|+||+|.
T Consensus 113 ~~~~vyvCGp~~ 124 (162)
T d2bmwa2 113 QKTHTYICGPPP 124 (162)
T ss_dssp TTEEEEEEECTT
T ss_pred CCCEEEEECCHH
Confidence 355799999974
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.98 E-value=1.2e+02 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 021632 143 ELLKSLMELLESERMILVNENVKL 166 (310)
Q Consensus 143 eLlk~ll~vLesEr~vll~Ena~L 166 (310)
.-|+..+..|..+...|-.+|..|
T Consensus 55 ~~L~~~~~~l~~~~~~l~~~~~~L 78 (88)
T d1nkpa_ 55 LSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333333
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=16.27 E-value=3.1e+02 Score=23.47 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=24.6
Q ss_pred HHHHhhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 021632 124 LVNQVNEMDHVCNESR-RKIELLKSLMELLESERMILVNEN 163 (310)
Q Consensus 124 l~del~~~er~~~Es~-rkieLlk~ll~vLesEr~vll~En 163 (310)
|+|+..-+-+..+.+. ..++.++.-+..|+.|+..|..++
T Consensus 236 lld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~ 276 (387)
T d1qvra2 236 LIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEK 276 (387)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455443333333332 357778888888999998885554
No 9
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=15.96 E-value=13 Score=26.56 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.1
Q ss_pred hhcccccccCCCC
Q 021632 296 VKKADFFNCGLPS 308 (310)
Q Consensus 296 vk~~d~f~cg~p~ 308 (310)
.++.++|+||+|.
T Consensus 99 ~~~~~vyiCGp~~ 111 (142)
T d1cqxa3 99 LPDADYYICGPIP 111 (142)
T ss_dssp CTTCEEEEESSHH
T ss_pred cCCceEEEECChh
Confidence 3568899999963
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=15.91 E-value=1.8e+02 Score=20.42 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=14.4
Q ss_pred cChhHHHHHHHHHhhhhHHHHHHhhhhh
Q 021632 105 ANIDDLVAELVAKNVESEILVNQVNEMD 132 (310)
Q Consensus 105 ~~idelvaelVa~nve~d~l~del~~~e 132 (310)
.+++.+...+--+++..+ .+++-.++
T Consensus 9 ~n~e~v~~~l~~R~~~~~--ld~i~~ld 34 (110)
T d1seta1 9 QEPEVFHRAIREKGVALD--LEALLALD 34 (110)
T ss_dssp HCHHHHHHHHHHTTCCCC--HHHHHHHH
T ss_pred hCHHHHHHHHHHcCCccC--HHHHHHHH
Confidence 456666666666666554 25554333
Done!