BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021633
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
 pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
 pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
 pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
          Length = 503

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 214 SHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLS 273
           ++HH      ++H + + F    +G G + IDG    +L  DA+ V   +   P     +
Sbjct: 29  AYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINFTT 88

Query: 274 LDWQDQSCS----DVGYLGNLGSSWSGMMNGYGSSTTN 307
               +Q  S    ++ YLG L S++  +   + S  TN
Sbjct: 89  TAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATN 126


>pdb|2YYE|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
           Aquifex Aeolicus Complexed With Ampcpp
 pdb|2YYE|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
           Aquifex Aeolicus Complexed With Ampcpp
 pdb|2ZOD|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
           Aquifex Aeolicus
 pdb|2ZOD|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
           Aquifex Aeolicus
          Length = 345

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 241 GTFIDGCQR-IMLPYDANE-VQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWS 295
           G  I G +  I+   D NE ++N + +   A+ L L     +C+DV   G LG +W+
Sbjct: 184 GILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWN 240


>pdb|2ZAU|A Chain A, Crystal Structure Of An N-Terminally Truncated
           Selenophosphate Synthetase From Aquifex Aeolicus
 pdb|2ZAU|B Chain B, Crystal Structure Of An N-Terminally Truncated
           Selenophosphate Synthetase From Aquifex Aeolicus
 pdb|2ZAU|C Chain C, Crystal Structure Of An N-Terminally Truncated
           Selenophosphate Synthetase From Aquifex Aeolicus
          Length = 311

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 241 GTFIDGCQR-IMLPYDANE-VQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWS 295
           G  I G +  I+   D NE ++N + +   A+ L L     +C+DV   G LG +W+
Sbjct: 150 GILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWN 206


>pdb|3CNF|T Chain T, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
            Cryo-Electron Microscopy
          Length = 1057

 Score = 28.5 bits (62), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 222  TPNVHNLCSPFGMSLDGTGGTFID 245
            TP + N CS +G+ L  TGG  +D
Sbjct: 1020 TPELINACSNYGIRLGSTGGAVLD 1043


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,726,209
Number of Sequences: 62578
Number of extensions: 377689
Number of successful extensions: 2096
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2091
Number of HSP's gapped (non-prelim): 13
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)