Query 021633
Match_columns 310
No_of_seqs 148 out of 256
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 82.1 0.89 3.1E-05 31.9 2.7 38 55-92 15-55 (57)
2 1tfi_A Transcriptional elongat 81.0 1.2 4.2E-05 31.4 3.1 37 55-91 9-48 (50)
3 3h0g_I DNA-directed RNA polyme 73.7 2.5 8.6E-05 33.5 3.3 37 56-92 73-112 (113)
4 1twf_I B12.6, DNA-directed RNA 64.2 4.7 0.00016 32.4 3.1 40 55-94 72-114 (122)
5 2fiy_A Protein FDHE homolog; F 61.5 3.3 0.00011 38.3 2.0 35 55-90 222-263 (309)
6 3po3_S Transcription elongatio 57.9 5 0.00017 34.3 2.3 37 55-91 137-176 (178)
7 1pqv_S STP-alpha, transcriptio 53.5 6.8 0.00023 35.8 2.6 37 55-91 268-307 (309)
8 3nw0_A Non-structural maintena 49.1 3.1 0.00011 36.7 -0.4 38 55-93 193-230 (238)
9 1gnf_A Transcription factor GA 48.4 9.5 0.00032 26.7 2.1 42 54-99 3-44 (46)
10 1k82_A Formamidopyrimidine-DNA 46.6 7.2 0.00025 34.9 1.6 30 54-88 239-268 (268)
11 1ee8_A MUTM (FPG) protein; bet 46.3 7.8 0.00027 34.7 1.7 30 54-88 234-263 (266)
12 3qt1_I DNA-directed RNA polyme 44.3 4.7 0.00016 33.3 0.0 38 55-92 92-132 (133)
13 2xzf_A Formamidopyrimidine-DNA 44.2 8.2 0.00028 34.5 1.6 30 54-88 241-270 (271)
14 4gat_A Nitrogen regulatory pro 44.0 17 0.00057 27.2 2.9 45 53-101 7-51 (66)
15 3u6p_A Formamidopyrimidine-DNA 43.3 7.5 0.00026 34.9 1.1 30 54-88 244-273 (273)
16 2kae_A GATA-type transcription 42.6 2.1 7.4E-05 32.5 -2.1 49 50-101 3-51 (71)
17 2gmg_A Hypothetical protein PF 41.5 16 0.00056 29.7 2.8 15 53-67 82-96 (105)
18 3cw1_L U1 small nuclear ribonu 41.2 7.5 0.00026 30.1 0.7 17 79-95 2-18 (77)
19 3dfx_A Trans-acting T-cell-spe 39.8 18 0.00061 26.9 2.5 45 53-101 5-49 (63)
20 1k3x_A Endonuclease VIII; hydr 38.5 10 0.00035 33.7 1.2 30 54-88 233-262 (262)
21 2yw8_A RUN and FYVE domain-con 37.9 17 0.00057 27.0 2.1 48 45-101 9-56 (82)
22 1z2q_A LM5-1; membrane protein 37.7 24 0.00081 26.3 3.0 38 46-92 12-49 (84)
23 4hc9_A Trans-acting T-cell-spe 35.9 21 0.00071 28.8 2.5 49 49-101 53-101 (115)
24 1pft_A TFIIB, PFTFIIBN; N-term 32.4 33 0.0011 23.0 2.8 33 54-92 4-36 (50)
25 2k2d_A Ring finger and CHY zin 31.9 17 0.00059 27.6 1.4 16 52-67 52-67 (79)
26 1x4u_A Zinc finger, FYVE domai 30.0 38 0.0013 25.1 3.0 46 46-100 5-50 (84)
27 1wii_A Hypothetical UPF0222 pr 30.0 49 0.0017 25.7 3.7 41 50-91 18-58 (85)
28 4aqz_A PILQ, type IV pilus bio 26.4 26 0.0009 29.2 1.7 25 211-235 2-27 (138)
29 2pk7_A Uncharacterized protein 26.2 31 0.001 25.7 1.8 30 54-90 7-36 (69)
30 1y02_A CARP2, FYVE-ring finger 26.0 24 0.00083 28.7 1.4 39 48-95 12-50 (120)
31 2jny_A Uncharacterized BCR; st 25.6 27 0.00091 26.0 1.4 30 54-90 9-38 (67)
32 2jr6_A UPF0434 protein NMA0874 23.8 31 0.0011 25.6 1.5 30 54-90 7-36 (68)
33 1wd2_A Ariadne-1 protein homol 23.7 57 0.002 23.3 2.9 42 54-95 5-49 (60)
34 2zjr_Z 50S ribosomal protein L 23.0 39 0.0013 24.6 1.9 27 51-89 26-52 (60)
35 2kdx_A HYPA, hydrogenase/ureas 22.6 48 0.0016 25.9 2.5 14 55-68 89-103 (119)
36 1joc_A EEA1, early endosomal a 21.9 42 0.0014 26.9 2.0 47 46-101 60-106 (125)
37 3mpx_A FYVE, rhogef and PH dom 21.1 20 0.00069 32.3 0.0 45 48-101 368-412 (434)
38 2js4_A UPF0434 protein BB2007; 20.1 32 0.0011 25.7 0.9 31 54-91 7-37 (70)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=82.11 E-value=0.89 Score=31.90 Aligned_cols=38 Identities=21% Similarity=0.675 Sum_probs=25.4
Q ss_pred CcCCCCCCCCCceeeeecccCCCCC---ccccccccccccc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQP---RYFCKTCRRYWTK 92 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCksCrRyWT~ 92 (310)
..+||+|...+..|--.+-.+...| .|.|..|.--|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4789999984444333333333344 3999999999976
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=80.95 E-value=1.2 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.643 Sum_probs=27.4
Q ss_pred CcCCCCCCCCCceeeeecccCCCCCc---ccccccccccc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYWT 91 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyWT 91 (310)
..+||+|...+..|--.+..+...|- |.|..|..-|.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 47899999877776555555554453 89999998885
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=73.72 E-value=2.5 Score=33.54 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=24.5
Q ss_pred cCCCCCCCCCceeeeecccCCCCCc---cccccccccccc
Q 021633 56 LKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYWTK 92 (310)
Q Consensus 56 ~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyWT~ 92 (310)
.+||+|...+..|--.+-.+-..|- |.|..|.--|++
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 8999999876544322322222222 889999999974
No 4
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=64.24 E-value=4.7 Score=32.37 Aligned_cols=40 Identities=20% Similarity=0.545 Sum_probs=28.0
Q ss_pred CcCCCCCCCCCceeeeecccCCCCCc---ccccccccccccCc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYWTKGG 94 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyWT~GG 94 (310)
...||+|...+.-|--.+-.+-..|- |.|..|.--|+..-
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 37899999876555444444443343 89999999998764
No 5
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=61.55 E-value=3.3 Score=38.29 Aligned_cols=35 Identities=20% Similarity=0.582 Sum_probs=25.6
Q ss_pred CcCCCCCCCCCceeeeecccC-------CCCCccccccccccc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYS-------LSQPRYFCKTCRRYW 90 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~-------~~QPR~fCksCrRyW 90 (310)
..+||.|.+. .++-|+.--. ...--+.|..|+.|+
T Consensus 222 R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 5799999998 4677775443 112238999999998
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=57.86 E-value=5 Score=34.31 Aligned_cols=37 Identities=19% Similarity=0.627 Sum_probs=23.0
Q ss_pred CcCCCCCCCCCceeeeecccCCCCC---cccccccccccc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQP---RYFCKTCRRYWT 91 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCksCrRyWT 91 (310)
..+||+|...+..|--.+-.+-.-| -|.|..|..-|.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 4689999976654322222222222 388999999995
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=53.52 E-value=6.8 Score=35.84 Aligned_cols=37 Identities=19% Similarity=0.639 Sum_probs=23.1
Q ss_pred CcCCCCCCCCCceeeeecccCCCCC---cccccccccccc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQP---RYFCKTCRRYWT 91 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCksCrRyWT 91 (310)
...||+|...+..|-=.+..+-..| -|.|..|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 4689999965544322222222223 289999999985
No 8
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=49.14 E-value=3.1 Score=36.74 Aligned_cols=38 Identities=24% Similarity=0.576 Sum_probs=30.8
Q ss_pred CcCCCCCCCCCceeeeecccCCCCCcccccccccccccC
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKG 93 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~G 93 (310)
...||.|...=+..|+.+ |-.++....|..|+..|+..
T Consensus 193 g~~C~~C~~~~H~~C~~~-~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAK-YFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHHH-HTTTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHHH-HHHhCCCCCCCCCCCCCCCC
Confidence 588999998888889755 44467778999999999875
No 9
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=48.43 E-value=9.5 Score=26.74 Aligned_cols=42 Identities=26% Similarity=0.630 Sum_probs=29.1
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNI 99 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNV 99 (310)
+...|..|...+|-. +-.- .....+|-+|.-||-..|+.|-+
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRRD--RTGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBCC--TTCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCCcCCCCCCc--CccC--CCCCccchHHHHHHHHcCCCCCC
Confidence 456788888877642 1111 12238999999999999987743
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=46.63 E-value=7.2 Score=34.87 Aligned_cols=30 Identities=13% Similarity=0.580 Sum_probs=21.8
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRR 88 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrR 88 (310)
...+||||...=.|.-+ . .+.-|||..|++
T Consensus 239 ~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 239 KGEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 34789999987766544 2 245599999985
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=46.32 E-value=7.8 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=22.0
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRR 88 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrR 88 (310)
+..+||||...=.|.-+ -.+.-|||..|++
T Consensus 234 ~g~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 234 EGLPCPACGRPVERRVV-----AGRGTHFCPTCQG 263 (266)
T ss_dssp TTSBCTTTCCBCEEEES-----SSCEEEECTTTTT
T ss_pred CCCCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 34789999987666433 1355699999996
No 12
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=44.34 E-value=4.7 Score=33.33 Aligned_cols=38 Identities=29% Similarity=0.714 Sum_probs=0.0
Q ss_pred CcCCCCCCCCCceeeeecccCCCCC---ccccccccccccc
Q 021633 55 ALKCPRCDSTHTKFCYYNNYSLSQP---RYFCKTCRRYWTK 92 (310)
Q Consensus 55 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCksCrRyWT~ 92 (310)
..+||+|...+..|=..+-.+-..| -|.|..|.--|++
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 3789999987665433333322222 2889999999975
No 13
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=44.22 E-value=8.2 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=21.9
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRR 88 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrR 88 (310)
...+||||...=.|.-+ . .+.-|||..|++
T Consensus 241 ~G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 241 TGEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred CCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 35789999987666543 2 245599999996
No 14
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=43.98 E-value=17 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.482 Sum_probs=31.8
Q ss_pred CCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 53 DQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 53 ~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
..+..|-.|.+.+|-- .-. ...-+ .+|-+|.-||-.-|++|-+..
T Consensus 7 ~~~~~C~~C~t~~Tp~--WR~-gp~G~-~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPL--WRR-NPEGQ-PLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSCCCTTTCCCCCSS--CEE-ETTTE-EECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCc--CCc-CCCCC-CccHHHHHHHHHcCCCCchhh
Confidence 4568899999987751 111 11222 899999999999999876644
No 15
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=43.32 E-value=7.5 Score=34.92 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=21.5
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRR 88 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrR 88 (310)
...+||||...=.|.-+ . .+.-|||..|++
T Consensus 244 ~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKTVV-A----GRGTHYCPRCQR 273 (273)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CcCCCCCCCCeEEEEEE-C----CCCeEECCCCCC
Confidence 34689999987666433 1 245599999985
No 16
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=42.57 E-value=2.1 Score=32.52 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 50 PPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 50 pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
++.++...|-.|.+.+|-. +-.-..... .+|-+|.=||.+.|+.|-+..
T Consensus 3 ~~~~~~~~C~nC~tt~Tp~--WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~ 51 (71)
T 2kae_A 3 HMNKKSFQCSNCSVTETIR--WRNIRSKEG-IQCNACFIYQRKYNKTRPVTA 51 (71)
T ss_dssp -----CCCCSSSCCSCCSS--CCCCSSSSC-CCSSHHHHHHHHHHSCCCTHH
T ss_pred CCCCCCCcCCccCCCCCCc--cccCCCCCC-ccchHHHHHHHHhCCCCCccc
Confidence 4456778999999988752 322111222 899999999999998876654
No 17
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.49 E-value=16 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.7
Q ss_pred CCCcCCCCCCCCCce
Q 021633 53 DQALKCPRCDSTHTK 67 (310)
Q Consensus 53 ~~~~~CPRC~S~nTK 67 (310)
..+-.||+|.|.+..
T Consensus 82 ~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 82 NIPSRCPKCKSEWIE 96 (105)
T ss_dssp SCCSSCSSSCCCCBC
T ss_pred CCCCCCcCCCCCccC
Confidence 456789999998766
No 18
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=41.17 E-value=7.5 Score=30.07 Aligned_cols=17 Identities=29% Similarity=1.026 Sum_probs=14.9
Q ss_pred CcccccccccccccCcc
Q 021633 79 PRYFCKTCRRYWTKGGT 95 (310)
Q Consensus 79 PR~fCksCrRyWT~GGt 95 (310)
|||||+-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999987644
No 19
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=39.83 E-value=18 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 53 DQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 53 ~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
.....|-.|....|-. .-.- .....+|-+|.=||-+.|+.|-+.+
T Consensus 5 ~~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNACGl~~~~~~~~RP~~~ 49 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTL--WRRN--ANGDPVCNACGLYYKLHNINRPLTM 49 (63)
T ss_dssp CTTCCCTTTCCSCCSS--CCCC--TTSCCCCHHHHHHHHHHSSCCCGGG
T ss_pred CCCCcCCCcCCCCCCc--cCCC--CCCCchhhHHHHHHHHcCCCCCcCc
Confidence 3456788888877642 1111 1223899999999999999877665
No 20
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=38.51 E-value=10 Score=33.70 Aligned_cols=30 Identities=33% Similarity=0.765 Sum_probs=20.9
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRR 88 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrR 88 (310)
...+||+|...=.|.-+ . .+.-|||..|++
T Consensus 233 ~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 233 DGEPCERCGSIIEKTTL-S----SRPFYWCPGCQH 262 (262)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CcCCCCCCCCEeEEEEE-C----CCCeEECCCCCC
Confidence 34579999987665433 2 344599999985
No 21
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.89 E-value=17 Score=27.05 Aligned_cols=48 Identities=19% Similarity=0.532 Sum_probs=29.4
Q ss_pred cccCCCCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 45 ERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 45 er~~~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
+++.|.|..+...|..|... | ++..-||-|+.|.+-.=..=+-..+|+
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C~~Cs~~~~~l 56 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKE---F------SISRRKHHCRNCGHIFCNTCSSNELAL 56 (82)
T ss_dssp ------CCCCCCBCTTTCCB---C------BTTBCCEECTTTCCEECSGGGCEEECC
T ss_pred CCCccccCccCCcccCcCCc---c------cCccccccCCCCCCEEChHHhCCeeec
Confidence 34567777788899999874 3 356788999999876655444334444
No 22
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.72 E-value=24 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.467 Sum_probs=27.3
Q ss_pred ccCCCCCCCCcCCCCCCCCCceeeeecccCCCCCccccccccccccc
Q 021633 46 RRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTK 92 (310)
Q Consensus 46 r~~~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~ 92 (310)
+..|.|..+...|..|... | ++..-||-|+.|.+-.=.
T Consensus 12 ~~~W~pd~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C~ 49 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCV---F------TTTVRRHHCRNCGYVLCG 49 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCB---C------CTTSCCEECTTTCCEECT
T ss_pred CCccccCCCCCCCcCcCCc---c------ccchhcccccCCCcEECh
Confidence 4567777788899999875 3 344678999988776543
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=35.86 E-value=21 Score=28.79 Aligned_cols=49 Identities=16% Similarity=0.450 Sum_probs=35.4
Q ss_pred CCCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 49 RPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 49 ~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
.+.......|-.|....|-- .-. -..-+.+|-+|.-||..-|+.|-+.+
T Consensus 53 ~~~~~~~~~C~~C~t~~tp~--WRr--~~~g~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 53 SAARRAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp CCCCCTTCCCTTTCCSCCSS--CEE--CTTSCEECHHHHHHHHHHSSCCCGGG
T ss_pred cccccccccCCCcCCCCcce--eEE--CCCCCCcchHHHHHHHHhCCCCCccc
Confidence 34445679999999988742 111 12336899999999999999877765
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=32.40 E-value=33 Score=22.99 Aligned_cols=33 Identities=18% Similarity=0.519 Sum_probs=22.2
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTK 92 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~ 92 (310)
..+.||.|.+.+-.| ...+-...|+.|+.-+..
T Consensus 4 ~~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 357899998854333 223556999999776653
No 25
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=31.92 E-value=17 Score=27.59 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.4
Q ss_pred CCCCcCCCCCCCCCce
Q 021633 52 HDQALKCPRCDSTHTK 67 (310)
Q Consensus 52 ~~~~~~CPRC~S~nTK 67 (310)
+--..+||.|.|.||+
T Consensus 52 h~lg~kC~~C~SyNTr 67 (79)
T 2k2d_A 52 HILGMKCKICESYNTA 67 (79)
T ss_dssp CTTCCCCTTTSCCCEE
T ss_pred eeecccCcCCCCcCeE
Confidence 4455699999999998
No 26
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.05 E-value=38 Score=25.14 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=31.1
Q ss_pred ccCCCCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCccccccc
Q 021633 46 RRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIP 100 (310)
Q Consensus 46 r~~~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVP 100 (310)
...|.|..+...|..|... | ++..-||-|+.|.+-.=..=+-..+|
T Consensus 5 ~~~W~pd~~~~~C~~C~~~---F------~~~~RrHHCR~CG~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSAT---F------SVLKKRRSCSNCGNSFCSRCCSFKVP 50 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCC---C------CSSSCCEECSSSCCEECTTTSCEEEC
T ss_pred CCccccCCCCCcCcCcCCc---c------ccchhhhhhcCCCcEEChhhcCCcee
Confidence 3456677788899999875 3 23478899999988765544433344
No 27
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=30.04 E-value=49 Score=25.69 Aligned_cols=41 Identities=12% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccc
Q 021633 50 PPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWT 91 (310)
Q Consensus 50 pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT 91 (310)
++-+..-.||.|+..++=-|=..- ...-...-|+.|...++
T Consensus 18 ~~L~t~F~CPfCnh~~sV~vkidk-~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHEKSCDVKMDR-ARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCSSCEEEEEET-TTTEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCCCeEEEEEEc-cCCEEEEEcccCCCeEE
Confidence 455667999999999877776643 23356788999987664
No 28
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=26.44 E-value=26 Score=29.22 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=15.6
Q ss_pred CCCccccCCCCCccc-ccCCCCCccc
Q 021633 211 GNLSHHHQEGLTPNV-HNLCSPFGMS 235 (310)
Q Consensus 211 g~~~~~~~~gl~~n~-h~l~~~~g~s 235 (310)
|..||||.|||.|-- |--+.-.|-.
T Consensus 2 ~~~~~~~~~g~vpr~s~~As~t~gq~ 27 (138)
T 4aqz_A 2 GSSHHHHHHGLVPRGSHMASMTGGQQ 27 (138)
T ss_dssp CSSCCSSCCCCCCCSCCTTCCCCSSC
T ss_pred Cccccccccccccccccccccccccc
Confidence 455788889999865 4444443333
No 29
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.17 E-value=31 Score=25.72 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYW 90 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyW 90 (310)
+.+.||.|...-+ |....-...|+.|++-+
T Consensus 7 eiL~CP~ck~~L~-------~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLK-------LSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCE-------ECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCe-------EeCCCCEEEcCCCCcEe
Confidence 4689999997532 22335668899998655
No 30
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.03 E-value=24 Score=28.70 Aligned_cols=39 Identities=15% Similarity=0.492 Sum_probs=22.0
Q ss_pred CCCCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcc
Q 021633 48 LRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGT 95 (310)
Q Consensus 48 ~~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGt 95 (310)
-++|......|..|... | ++..-||-|+.|.+.+-..=+
T Consensus 12 ~~~Pd~~~~~C~~C~~~---F------s~~~RkHHCR~CG~ifC~~Cs 50 (120)
T 1y02_A 12 FPSPTGLEPSCKSCGAH---F------ANTARKQTCLDCKKNFCMTCS 50 (120)
T ss_dssp --------CCCTTTCCC---C------SSGGGCEECTTTCCEECGGGE
T ss_pred CCcCccccCcccCcCCc---c------ccccccccCCCCCCeeCHHHh
Confidence 34455666789999875 3 233678999999887655443
No 31
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.59 E-value=27 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYW 90 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyW 90 (310)
+.+.||.|...- -| ....-...|+.|++-+
T Consensus 9 eiL~CP~ck~~L---~~----~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPL---RY----LESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBC---EE----ETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcC---eE----eCCCCEEEcCCCCccc
Confidence 468999999842 22 2235668899998655
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.76 E-value=31 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.403 Sum_probs=20.1
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCccccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYW 90 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyW 90 (310)
+.+.||.|... .-| ........|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGR---LEY----HQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 46899999963 222 2234668899998655
No 33
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.73 E-value=57 Score=23.29 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCcCCCCCCCCCceeeeecccCCCC---CcccccccccccccCcc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQ---PRYFCKTCRRYWTKGGT 95 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~Q---PR~fCksCrRyWT~GGt 95 (310)
...+||.|...-.|----|.-.-.. --+||-.|.+-|..-|.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 3467888888777755444333322 24788888888876654
No 34
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=23.01 E-value=39 Score=24.62 Aligned_cols=27 Identities=26% Similarity=0.744 Sum_probs=21.3
Q ss_pred CCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccc
Q 021633 51 PHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRY 89 (310)
Q Consensus 51 p~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRy 89 (310)
..+....||.|... + .|.+.|..|.-|
T Consensus 26 ~~p~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred cCCCceECCCCCCE--e----------CCceEcCCCCcC
Confidence 44566889999875 4 899999999966
No 35
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.57 E-value=48 Score=25.85 Aligned_cols=14 Identities=21% Similarity=0.619 Sum_probs=10.9
Q ss_pred Cc-CCCCCCCCCcee
Q 021633 55 AL-KCPRCDSTHTKF 68 (310)
Q Consensus 55 ~~-~CPRC~S~nTKF 68 (310)
.. .||.|.+.+.+|
T Consensus 89 ~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 89 DYGVCEKCHSKNVII 103 (119)
T ss_dssp TTCCCSSSSSCCCEE
T ss_pred CCCcCccccCCCcEE
Confidence 46 788888888776
No 36
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.93 E-value=42 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=31.0
Q ss_pred ccCCCCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 46 RRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 46 r~~~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
.+.|.|..+...|..|... | ++..-||-|+.|.+-.=..=+-..+|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~---F------s~~~RrHHCR~CG~vfC~~Cs~~~~~~ 106 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKG---F------SVTVRRHHCRQCGNIFCAECSAKNALT 106 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCB---C------CSSSCCEECTTTCCEECGGGSCEEECC
T ss_pred CCccccCCCCCCCcCcCCc---c------ccccccccCCCCCeEEChHHhCCcccc
Confidence 4457777778889999874 3 345788999988876554433333443
No 37
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.08 E-value=20 Score=32.33 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 021633 48 LRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 101 (310)
Q Consensus 48 ~~pp~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPV 101 (310)
.+.|......|+.|... | +...-||.|+.|.+-+-..=+-..+|+
T Consensus 368 ~w~~~~~~~~c~~c~~~---f------~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~ 412 (434)
T 3mpx_A 368 TLVPVTHVMMCMNCGCD---F------SLTLRRHHCHACGKIVCRNCSRNKYPL 412 (434)
T ss_dssp ------------------------------------------------------
T ss_pred cCCCcccCCcCCCcCCC---C------CCcchhhhcccCcCEeehhhCCCeeeC
Confidence 34555667789999773 3 334568999999876544333333444
No 38
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.10 E-value=32 Score=25.68 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=21.1
Q ss_pred CCcCCCCCCCCCceeeeecccCCCCCcccccccccccc
Q 021633 54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWT 91 (310)
Q Consensus 54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT 91 (310)
+.+.||.|... .-| ........|+.|++-+-
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGR---LEF----QRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCB---EEE----ETTTTEEEETTTTEEEE
T ss_pred hheECCCCCCc---CEE----eCCCCEEEcCCCCceec
Confidence 46899999983 222 22356688999987553
Done!