BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021634
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 26/180 (14%)

Query: 100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINY-----GTEQIKGGWGWRV 154
            A+   P+Y++E+APA  RG + +  QF+I  G L    +NY     G        GWR 
Sbjct: 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201

Query: 155 SLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKAS 214
             A   +PA +  +    +PE+P  L+ R    Q A+ +L+++ G             A+
Sbjct: 202 MFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ-AEGILRKIMGNT----------LAT 250

Query: 215 STAKTINHPFKKIIQRKYRPQLLM--------AMAIPFFQQVTGINVIAFYAPLLFRTIG 266
              + I H       RK   +LLM         + +  FQQ  GINV+ +YAP +F+T+G
Sbjct: 251 QAVQEIKHSLDH--GRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,875,094
Number of Sequences: 62578
Number of extensions: 275811
Number of successful extensions: 887
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 1
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)