Query 021634
Match_columns 310
No_of_seqs 281 out of 1724
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 07:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.5E-33 1.9E-37 246.0 28.4 274 28-308 52-348 (491)
2 3o7q_A L-fucose-proton symport 100.0 1.1E-29 3.8E-34 221.6 22.1 252 20-308 50-331 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.2E-29 4.1E-34 222.1 14.9 265 20-308 52-326 (451)
4 2gfp_A EMRD, multidrug resista 99.9 7.2E-28 2.5E-32 206.0 11.8 240 20-302 24-265 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 3.4E-24 1.1E-28 189.7 20.0 275 22-305 45-352 (491)
6 2cfq_A Lactose permease; trans 99.8 1.3E-21 4.4E-26 169.6 7.3 254 20-308 32-295 (417)
7 2xut_A Proton/peptide symporte 99.8 4.3E-20 1.5E-24 164.7 14.5 150 20-172 37-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 7.6E-13 2.6E-17 115.3 14.6 151 20-173 277-433 (451)
9 2cfq_A Lactose permease; trans 99.4 6.7E-13 2.3E-17 114.8 9.5 147 29-178 257-405 (417)
10 4gc0_A D-xylose-proton symport 99.4 2.9E-12 1E-16 113.0 12.2 158 20-177 301-467 (491)
11 3o7q_A L-fucose-proton symport 99.3 1.8E-11 6.3E-16 106.2 11.9 145 22-171 286-430 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.2 1.3E-11 4.5E-16 108.8 8.1 145 24-172 312-470 (491)
13 2gfp_A EMRD, multidrug resista 98.7 2.4E-09 8.2E-14 90.9 2.2 134 20-159 224-362 (375)
14 2xut_A Proton/peptide symporte 98.7 2.1E-08 7.1E-13 89.1 5.7 138 34-172 338-501 (524)
15 2g9p_A Antimicrobial peptide l 76.3 1.7 5.7E-05 19.4 1.6 14 50-63 2-15 (26)
16 3bz1_X Photosystem II PSBX pro 32.2 49 0.0017 18.3 2.8 26 266-291 11-36 (50)
17 3arc_X Photosystem II PSBX pro 31.9 50 0.0017 17.2 2.7 21 267-287 2-22 (39)
18 4dve_A Biotin transporter BIOY 31.7 1.3E+02 0.0046 22.3 6.2 25 37-61 99-123 (198)
19 3arc_T Photosystem II reaction 23.5 78 0.0027 15.6 2.9 9 170-178 20-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.5e-33 Score=246.04 Aligned_cols=274 Identities=22% Similarity=0.334 Sum_probs=222.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh------------------hhhhHHHHHH
Q 021634 28 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG------------------AAVNVYMLIF 89 (310)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~ 89 (310)
.+..+.+++.+++.+|.++|++++|+++||+|||++++++.+++.+++++++ ++++++.+++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 3556789999999999999999999999999999999999999999999988 4789999999
Q ss_pred HHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC-----CCchhHHHHHhhHHHHH
Q 021634 90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPAS 164 (310)
Q Consensus 90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~ 164 (310)
+|+++|++.|...+....+++|+.|+++|++..++.+.+..+|.++++.++....... ....||+.+.+..++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999988887665432 23579999999999988
Q ss_pred HHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHH
Q 021634 165 ILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPF 244 (310)
Q Consensus 165 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
+..+..+++||+|+|+..+++ .+++++.+++...+++.+++..+.++...++++... ... ....++.........
T Consensus 212 ~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 212 LFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGG-RLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhh-HHH---HhcccHHHHHHHHHH
Confidence 888888999999999999888 777777777665544333333222222221111111 111 122344555566667
Q ss_pred HHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634 245 FQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT 308 (310)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~ 308 (310)
+.+..+.+.+..|.|.+.+..+.+.........+.++...++.+++++ +.||+|||+.++.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~dr~Grr~~~~~~ 348 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIM--TVDKFGRKPLQIIG 348 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHH--HHHhhcCcchhccc
Confidence 777888889999999999999888888888888889999999999999 99999999987754
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.1e-29 Score=221.56 Aligned_cols=252 Identities=12% Similarity=0.105 Sum_probs=201.0
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhh
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLGV 96 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~ 96 (310)
|.+++++|+++.+.+++.+.+.++..++++++|+++||+|||++++.+.++..++.+++ +++++++.++++|++.|+
T Consensus 50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 129 (438)
T 3o7q_A 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAA 129 (438)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHh
Confidence 66889999999999999999999999999999999999999999999999999999998 888999999999999999
Q ss_pred cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc-ccCCC----------------------chhH
Q 021634 97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE-QIKGG----------------------WGWR 153 (310)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~----------------------~~wr 153 (310)
+.+...+....++.|++|+++|++++++.+.+..+|..+++.++..+. ...+. .+||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 209 (438)
T 3o7q_A 130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQ 209 (438)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHH
Confidence 999999999999999999999999999999999999999999988776 43321 0199
Q ss_pred HHHHhhHHHHHHHHHHhhc--ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhcccc
Q 021634 154 VSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRK 231 (310)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (310)
+.|++.+++.++..+..++ .||+++...++++ +++.+.++++.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 258 (438)
T 3o7q_A 210 TPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------------------QGSFSASLSRLARIR 258 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------------------------TTSHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------------------------ccchhhhHHHHHhCh
Confidence 9998877766665554443 4555431100000 001112334444443
Q ss_pred chhHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634 232 YRPQLLMAMAIPFFQQVTGINVIAFYAPLL-FRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT 308 (310)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~ 308 (310)
. ++...+..+...........+.|.| +++. |+++.+++.......++..++.++.++ +.||++||+.+..+
T Consensus 259 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~~ 331 (438)
T 3o7q_A 259 H----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW--LISRFAPHKVLAAY 331 (438)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence 3 2333333344444556777889999 8776 999999999999999999999999999 99999999987754
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=1.2e-29 Score=222.12 Aligned_cols=265 Identities=17% Similarity=0.099 Sum_probs=205.1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHh
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLG 95 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G 95 (310)
+.+.+++ .++.+.+++.+++.++..++++++|+++||+|||+++.++.++..++.+++++ +++++.++++|++.|
T Consensus 52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 130 (451)
T 1pw4_A 52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 130 (451)
T ss_dssp HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 6778889 99999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCch-hHHHHHhhHHHHHHHHHHh-hcc
Q 021634 96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPASILTLGA-LFL 173 (310)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~~~~~~~-~~~ 173 (310)
++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+... .+ ||+.|++.+++.++..+.. +++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998765532 45 9999999888877665544 558
Q ss_pred cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhh-ccccchhHHHHHHHHHHHHHhhhHH
Q 021634 174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKI-IQRKYRPQLLMAMAIPFFQQVTGIN 252 (310)
Q Consensus 174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (310)
||+|++...++.+..+ ++.+.+. +++.+ + +.+.++. .+...+++.++...+..+......+
T Consensus 208 ~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYK-----------NDYPDDY---NEKAE-Q---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 269 (451)
T ss_dssp CCSSTTTCCCSCTTTC-----------CC--------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHhhcCCCChhhhc-----------ccccccc---hhhhh-c---ccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 8887653221110000 0000000 00000 0 1111111 1122233444445555555556677
Q ss_pred HHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHh--ccchhhhhc
Q 021634 253 VIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV--RWRKLDIYT 308 (310)
Q Consensus 253 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~--g~r~~~~~~ 308 (310)
.+..+.|.++++ .|+++.+++.......++.+++.++.++ +.||+ +||+.+..+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~~~~~~~ 326 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVFRGNRGATGVF 326 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCchhHHHH
Confidence 788999999987 6999999999999999999999999999 99999 999877644
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=7.2e-28 Score=206.00 Aligned_cols=240 Identities=16% Similarity=0.200 Sum_probs=197.3
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG 99 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 99 (310)
|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++..++++++.+++.|++.|++.+
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 103 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG 103 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH-HhhcccCCch
Q 021634 100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL-GALFLPETPN 178 (310)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~~es~~ 178 (310)
...+....++.|++|+++|+++++..+.+..+|..+++.+++.+.+ ..+||+.+++.++..++..+ ..+++||+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 104 VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 9999999999999999999999999999999999999999887764 35799999988888777665 3455788754
Q ss_pred hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634 179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA 258 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (310)
+..++ ++.+.++++.+++ +.++...+..+........+..+.
T Consensus 181 ~~~~~----------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 181 VDAPR----------------------------------TRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp TTCCC----------------------------------CCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccc----------------------------------ccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHHH
Confidence 21100 0111223333332 333444444445555666778888
Q ss_pred HHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634 259 PLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR 302 (310)
Q Consensus 259 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r 302 (310)
|.++++ .|.++.+++.......++.+++.++.++ +.||.+++
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--l~~r~~~~ 265 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR--PNKRFSTL 265 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT--TTTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 888876 6899999999999999999999999998 89998874
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=3.4e-24 Score=189.69 Aligned_cols=275 Identities=15% Similarity=0.104 Sum_probs=183.3
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634 22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF 100 (310)
Q Consensus 22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 100 (310)
.++|+|+++.+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.++++++++++.++++|++.|++.+.
T Consensus 45 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 45 STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF 124 (491)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 345699999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhcccccc--hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc-cCCc
Q 021634 101 ANQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETP 177 (310)
Q Consensus 101 ~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~ 177 (310)
..+....++.|++|+++ |+.+.++++.+..+|..++|.+++.+.+. .+||+.|++.++..++..+..++. |+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999988 77788889999999999999998887654 469999999877766655554432 2211
Q ss_pred hh---hHhccCcHHHHHHHHHH----------------hcCCcchHHHHHHH---HH------hhhccccccchhhhhcc
Q 021634 178 NS---LIQRKSDHQKAKLMLQR----------------VRGTNDVEAEFDDL---LK------ASSTAKTINHPFKKIIQ 229 (310)
Q Consensus 178 ~~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~ 229 (310)
+. ..++..+.++.++..+. ..+..+.+...... .. .....+....+ ...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 279 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEH 279 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHH
Confidence 10 01111112332222221 11111111100000 00 00000000000 0000
Q ss_pred ccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhh
Q 021634 230 RKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD 305 (310)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~ 305 (310)
++. .......+..+.....+.....+.|.+.++. +.+..+.+.......++..++..+.++ +.||++||+..
T Consensus 280 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~r~~~ 352 (491)
T 4aps_A 280 LRV--VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAW--LWTAWKKNQPS 352 (491)
T ss_dssp --C--TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHH--HHHHTTTC---
T ss_pred HHH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHH--HHHHHhccCCC
Confidence 111 1111122222222233344556677777664 777677788888888888999999999 99999998654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=1.3e-21 Score=169.60 Aligned_cols=254 Identities=11% Similarity=-0.006 Sum_probs=155.1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHH---HhhhhhhH-HHHHHHHHHHh
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSA---LGGAAVNV-YMLIFGRLLLG 95 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~r~l~G 95 (310)
.++++++|+|+.+.+++.+.+.+++.++++++|+++||+|||++++.+..+..++.. ...+++.. ..+...+.+.|
T Consensus 32 ~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (417)
T 2cfq_A 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG 111 (417)
T ss_dssp HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778999999999999999999999999999999999999999988877655321 12232221 12345566666
Q ss_pred hcccccccchhhhhhhcccc--cchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634 96 VGVGFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL 173 (310)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 173 (310)
++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.++..++..+..++.
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp SSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHc
Confidence 66555555545555555543 345666666666677888888888776654 359999988777765555555555
Q ss_pred cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHH
Q 021634 174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV 253 (310)
Q Consensus 174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (310)
||+++...++++ .+ + .++++....++++.++++. ++...+..+.....+..
T Consensus 188 ~~~~~~~~~~~~-~~----------~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 188 KTDAPSSATVAN-AV----------G--------------ANHSAFSLKLALELFRQPK----LWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp CCCCSCSSCSSS-SS----------S--------------SCCCCCCHHHHHHHTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred Cccccccccccc-cc----------c--------------cccccccHHHHHHHhcCCc----hhhHHHHHHHHHHHHHH
Confidence 443321000000 00 0 0000000112233333322 22222222222223344
Q ss_pred HHHhHHHHHHHc-C---CCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634 254 IAFYAPLLFRTI-G---LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT 308 (310)
Q Consensus 254 ~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~ 308 (310)
+..+.|.++++. + .+....+....+..++.+++.+..++ +.||+|||+++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL--IINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcHHHHHHHH
Confidence 445577777553 3 22444567777777888889999999 99999999987654
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=4.3e-20 Score=164.66 Aligned_cols=150 Identities=14% Similarity=0.174 Sum_probs=132.9
Q ss_pred cccccccc------cchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHH
Q 021634 20 TKISNYCK------FDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGR 91 (310)
Q Consensus 20 ~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r 91 (310)
+++.+++| +++.+.+++.+++.++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44566777 9999999999999999999999999999999 999999999999999999999998 999999999
Q ss_pred HHHhhcccccccchhhhhhhcccccchhhhhhH---HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH
Q 021634 92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNG---FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL 168 (310)
Q Consensus 92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~ 168 (310)
++.|++.+...+....++.|++|+++|+++.+. .+.+..+|..++|.+++.+.+. .+||+.|++.+++.++..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 8899999999999998776643 4799999998877766655
Q ss_pred Hhhc
Q 021634 169 GALF 172 (310)
Q Consensus 169 ~~~~ 172 (310)
..++
T Consensus 194 ~~~~ 197 (524)
T 2xut_A 194 FFWL 197 (524)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 5544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=7.6e-13 Score=115.35 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=127.4
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh--CchhHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHH
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSVLMGGAAFL-AGSALGGAA--VNVYMLIFGRLLL 94 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~ 94 (310)
..+++.+|.++.+.+++.+...++..++.++.|+++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.
T Consensus 277 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 277 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 345556899999999999999999999999999999999 99999888877766 666666665 3677777888899
Q ss_pred hhcccccccchhhhhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634 95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL 173 (310)
Q Consensus 95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 173 (310)
|++.+...+....++.|.+|+++|+++.++.+....+ |..+++.+.+.+.+. .+|+..|++.+++.++..+..++.
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888889999999999999999999999999 999999998877654 358899988888777766665544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.40 E-value=6.7e-13 Score=114.80 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=118.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhh
Q 021634 29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY 108 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 108 (310)
+..+.++..++..++..++.++.|+++||+|||+++..+.++..++.+..++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888889999999999999999999998888888887777777787777777777887766666667889
Q ss_pred hhhcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCch
Q 021634 109 LSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPN 178 (310)
Q Consensus 109 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~ 178 (310)
+.|.+|++.|+++.+. ++....+|..++|.+++.+.+. .+++..|.+.+++.++..+..++ .||+++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 4778889999999998876642 46888888888777776655444 666544
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.38 E-value=2.9e-12 Score=113.02 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=109.0
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLL 94 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~ 94 (310)
+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44556667777777778888888999999999999999999999998888887776655432 1222222222222
Q ss_pred hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC---CCchhHHHHHhhHHHHHHHHHHh-
Q 021634 95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK---GGWGWRVSLALAAVPASILTLGA- 170 (310)
Q Consensus 95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~wr~~~~~~~~~~~~~~~~~- 170 (310)
+.......++...+.+|.+|.+.|++++++......+|..+++.+...+.... ...++...|++.++++++..+..
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222334566789999999999999999999888888888776644333210 11234456777777776666544
Q ss_pred hcccCCc
Q 021634 171 LFLPETP 177 (310)
Q Consensus 171 ~~~~es~ 177 (310)
+++||+.
T Consensus 461 ~~~PETk 467 (491)
T 4gc0_A 461 KFVPETK 467 (491)
T ss_dssp HHCCCCT
T ss_pred heecCCC
Confidence 6699984
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=1.8e-11 Score=106.20 Aligned_cols=145 Identities=9% Similarity=-0.047 Sum_probs=116.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634 22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA 101 (310)
Q Consensus 22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (310)
+++.+|.++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.+... ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 556679999999999999999999999999999999999999999999999998888888777665444 8888888888
Q ss_pred ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634 102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL 171 (310)
Q Consensus 102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 171 (310)
.+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+ +++..|++.++..++..+..+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHH
Confidence 999999989999866 888887766 455888899999887765432 167777765555444443333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=1.3e-11 Score=108.81 Aligned_cols=145 Identities=10% Similarity=-0.024 Sum_probs=111.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHH-----HHHHHHHHHHHHhhhhh---------hHHHHHH
Q 021634 24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL-----MGGAAFLAGSALGGAAV---------NVYMLIF 89 (310)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~l~~ 89 (310)
+.++.+..+.++..+...++..++.++.+++.||+|||+... .+..+..++.++..... +.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4aps_A 312 ERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVG 391 (491)
T ss_dssp HSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHH
T ss_pred HHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHH
Confidence 334445455677778888889999999999999999986654 67777777666655543 6677778
Q ss_pred HHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634 90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG 169 (310)
Q Consensus 90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~ 169 (310)
.-++.|++.+...+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+. ++...|.+.++..++..+.
T Consensus 392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHH
Confidence 889999999988999999999999999999999999999999999999997766542 4556777767666666555
Q ss_pred hhc
Q 021634 170 ALF 172 (310)
Q Consensus 170 ~~~ 172 (310)
.++
T Consensus 468 ~~~ 470 (491)
T 4aps_A 468 LVF 470 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.74 E-value=2.4e-09 Score=90.94 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=101.2
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHH-HHHHHH--Hhhh--hhhHHHHHHHHHHH
Q 021634 20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA-FLAGSA--LGGA--AVNVYMLIFGRLLL 94 (310)
Q Consensus 20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l~~~r~l~ 94 (310)
..+++++|.++.+.+.+.+...++..++.++.+++.||+|++. ..+... ...+.. .... .++.+.+.+..++.
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 301 (375)
T 2gfp_A 224 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF 301 (375)
T ss_dssp CSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Confidence 3445558999999999999999999999999999999999832 233322 222221 1112 23667777888999
Q ss_pred hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhh
Q 021634 95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALA 159 (310)
Q Consensus 95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~ 159 (310)
|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+ ..+|+..+.+.
T Consensus 302 g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~ 362 (375)
T 2gfp_A 302 FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHH
Confidence 99999999999999999998 899999999999999999888888665543 23566665553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.66 E-value=2.1e-08 Score=89.08 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH----hhhCc----hhHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHhh
Q 021634 34 TSFTSSLYVAGLVASFVASSVT----RAFGR----KPSVLMGGAAFLAGSALGGAA---------VNVYMLIFGRLLLGV 96 (310)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~ 96 (310)
+.+.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 3344444445555666666553 55443 345667777777777766653 366777788899999
Q ss_pred cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchh---------HHHHHhhHHHHHHHH
Q 021634 97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW---------RVSLALAAVPASILT 167 (310)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w---------r~~~~~~~~~~~~~~ 167 (310)
+.+...+....++.|..|+++|++++++.+....+|..+++.+.+.+.+..+ .+| +..|++.+.+.++..
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654211 123 333666666666555
Q ss_pred HHhhc
Q 021634 168 LGALF 172 (310)
Q Consensus 168 ~~~~~ 172 (310)
+..++
T Consensus 497 ~~~~~ 501 (524)
T 2xut_A 497 IVFAL 501 (524)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 55444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=76.27 E-value=1.7 Score=19.41 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.5
Q ss_pred hhHHHHhhhCchhH
Q 021634 50 VASSVTRAFGRKPS 63 (310)
Q Consensus 50 ~~g~l~dr~Grr~~ 63 (310)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999975
No 16
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=32.24 E-value=49 Score=18.25 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=18.8
Q ss_pred CCCchhHHHHHHHHHhhhhhhhhHHH
Q 021634 266 GLGRLKVCQLSKWIECGGSIGFGRNM 291 (310)
Q Consensus 266 g~~~~~~~~~~~~~~~~~~~g~~~~~ 291 (310)
+++++...++.++...+-++..+.++
T Consensus 11 ~mTpSL~NFl~SlvaG~vVvv~i~~a 36 (50)
T 3bz1_X 11 TITPSLKGFFIGLLSGAVVLGLTFAV 36 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887776666663333
No 17
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=31.92 E-value=50 Score=17.20 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHhhhhhhh
Q 021634 267 LGRLKVCQLSKWIECGGSIGF 287 (310)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~g~ 287 (310)
++|+...++.++...+-++..
T Consensus 2 mTpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHH
Confidence 456666777777665555555
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=31.71 E-value=1.3e+02 Score=22.30 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhCch
Q 021634 37 TSSLYVAGLVASFVASSVTRAFGRK 61 (310)
Q Consensus 37 ~~~~~~~~~~~~~~~g~l~dr~Grr 61 (310)
+.-|.++..+++.+.|+++||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456677788888888888887543
No 19
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.48 E-value=78 Score=15.61 Aligned_cols=9 Identities=44% Similarity=0.921 Sum_probs=5.9
Q ss_pred hhcccCCch
Q 021634 170 ALFLPETPN 178 (310)
Q Consensus 170 ~~~~~es~~ 178 (310)
..+++|.|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 345788775
Done!