BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021635
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 72 LPAGVKFDPTDQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKD 131
LP G +F PTD EL+EH + A R P+I E + P LP +
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPII--------AEVDLYKFDPWDLPERALF 66
Query: 132 GLIRHFFHRP-SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVL 190
G +F P + Y G+R R G W TG +PV G+ G KK LV
Sbjct: 67 GAREWYFFTPRDRKYPNGSRPNR------AAGNGYWKATGADKPVAPRGRTLGIKKALVF 120
Query: 191 YTNYGKQKKPEKTNWVMHQYHL 212
Y GK + KT+W+MH+Y L
Sbjct: 121 YA--GKAPRGVKTDWIMHEYRL 140
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 72 LPAGVKFDPTDQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKD 131
LP G +F PTD+EL+ + A +F L E + P LP +
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGY--------DFSLQLIAEIDLYKFDPWVLPNKALF 71
Query: 132 GLIRHFFHRP-SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVL 190
G +F P + Y G+R R G W TG + + G+ G KK LV
Sbjct: 72 GEKEWYFFSPRDRKYPNGSRPNR------VAGSGYWKATGTDKIISTEGQRVGIKKALVF 125
Query: 191 YTNYGKQKKPEKTNWVMHQYHL 212
Y GK K KTNW+MH+Y L
Sbjct: 126 YI--GKAPKGTKTNWIMHEYRL 145
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 72 LPAGVKFDPTDQELLEHLEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKD 131
LP G +F PTD+EL+ + A +F L E + P LP +
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGY--------DFSLQLIAEIDLYKFDPWVLPNKALF 68
Query: 132 GLIRHFFHRP-SKAYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVL 190
G +F P + Y G+R R G W TG + + G+ G KK LV
Sbjct: 69 GEKEWYFFSPRDRKYPNGSRPNR------VAGSGYWKATGTDKIISTEGQRVGIKKALVF 122
Query: 191 YTNYGKQKKPEKTNWVMHQYHL 212
Y GK K KTNW+MH+Y L
Sbjct: 123 YI--GKAPKGTKTNWIMHEYRL 142
>pdb|2GML|A Chain A, Crystal Structure Of Catalytic Domain Of E.Coli Rluf
pdb|2GML|B Chain B, Crystal Structure Of Catalytic Domain Of E.Coli Rluf
Length = 237
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 49 RSCPSCGHQIKCNEQARIHD--LPGLPAGVKFDPTDQELLE 87
R C G+++K E+ RI + L G+P G D TD EL++
Sbjct: 138 RXCEHFGYEVKKLERTRIXNVSLSGIPLGEWRDLTDDELID 178
>pdb|3DH3|A Chain A, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
pdb|3DH3|B Chain B, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
pdb|3DH3|C Chain C, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
pdb|3DH3|D Chain D, Crystal Structure Of Rluf In Complex With A 22 Nucleotide
Rna Substrate
Length = 290
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 49 RSCPSCGHQIKCNEQARIHD--LPGLPAGVKFDPTDQELLE 87
R C G+++K E+ RI + L G+P G D TD EL++
Sbjct: 191 RMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELID 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,029,815
Number of Sequences: 62578
Number of extensions: 451188
Number of successful extensions: 764
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 11
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)