Query 021635
Match_columns 310
No_of_seqs 177 out of 968
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 4.2E-48 1.4E-52 340.9 14.4 152 66-234 11-168 (171)
2 3ulx_A Stress-induced transcri 100.0 1.1E-47 3.9E-52 339.1 15.2 151 66-233 9-170 (174)
3 3pih_A Uvrabc system protein A 58.5 1.7 5.7E-05 46.6 -0.7 72 7-78 70-149 (916)
4 4ayb_P DNA-directed RNA polyme 51.0 7.4 0.00025 27.2 1.8 14 46-59 21-34 (48)
5 3h0g_L DNA-directed RNA polyme 46.3 7.1 0.00024 28.7 1.2 17 45-61 35-51 (63)
6 1ldd_A APC2WHB, anaphase promo 44.8 13 0.00044 28.1 2.5 25 73-97 37-62 (74)
7 2f9y_B Acetyl-coenzyme A carbo 41.3 15 0.00051 34.3 2.9 44 44-90 20-65 (304)
8 2r6f_A Excinuclease ABC subuni 38.0 7 0.00024 42.3 0.1 72 7-78 90-168 (972)
9 1wd2_A Ariadne-1 protein homol 37.5 13 0.00045 26.6 1.5 17 46-62 4-20 (60)
10 2ygr_A Uvrabc system protein A 37.1 6.9 0.00024 42.4 -0.1 72 7-78 92-170 (993)
11 1qyp_A RNA polymerase II; tran 35.9 13 0.00045 25.9 1.2 10 49-58 16-25 (57)
12 1twf_L ABC10-alpha, DNA-direct 35.2 12 0.00041 27.9 1.0 17 45-61 42-58 (70)
13 1e8j_A Rubredoxin; iron-sulfur 31.8 24 0.00082 24.7 2.1 28 49-79 4-31 (52)
14 2jz8_A Uncharacterized protein 27.4 31 0.0011 26.9 2.2 34 46-81 46-79 (87)
15 3dct_B Nuclear receptor coacti 27.1 24 0.00081 20.5 1.1 14 79-92 2-15 (21)
16 2v3b_B Rubredoxin 2, rubredoxi 25.8 21 0.00072 25.3 0.9 28 49-79 4-31 (55)
17 3a43_A HYPD, hydrogenase nicke 25.8 40 0.0014 27.8 2.7 10 48-57 107-116 (139)
18 4rxn_A Rubredoxin; electron tr 21.3 22 0.00076 25.2 0.3 28 49-79 4-31 (54)
19 1dx8_A Rubredoxin; electron tr 20.3 37 0.0013 25.2 1.3 28 48-78 7-34 (70)
20 1gh9_A 8.3 kDa protein (gene M 20.2 21 0.0007 26.7 -0.1 17 45-62 18-34 (71)
21 2kn9_A Rubredoxin; metalloprot 20.1 33 0.0011 26.3 1.0 30 47-79 26-55 (81)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4.2e-48 Score=340.94 Aligned_cols=152 Identities=30% Similarity=0.493 Sum_probs=123.1
Q ss_pred ccCCCCCCCceeeCCChHHHHHH-HHHHHhcCcCCCCCcccccccccccccCccCCCCCCCCCcccCCc-eEEEEecCCC
Q 021635 66 IHDLPGLPAGVKFDPTDQELLEH-LEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGL-IRHFFHRPSK 143 (310)
Q Consensus 66 ~~~~~~LPpGfRF~PTDeELI~y-L~~Kv~g~~~~~~Plid~fIp~id~e~DVy~~~PweLPg~~~dG~-~~yFF~~~~k 143 (310)
...+.+|||||||+|||||||.| |++|+.+. |++..+|+++ |||.+|||+||+.+..|+ .||||+++.+
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~-----~~~~~~I~e~----Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~ 81 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGY-----DFSLQLIAEI----DLYKFDPWVLPNKALFGEKEWYFFSPRDR 81 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTC-----CCSSCCSEEC----CGGGSCGGGHHHHSSSCSSEEEEEEECCC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCC-----CCCCCeEeec----ccccCChhHhhchhhcCCccEEEEecccc
Confidence 45678999999999999999985 99999884 4556788755 699999999999886654 5778888889
Q ss_pred CCCCCCcccccccccCCCCccEEeecCCCeeEeeCCEEEEEEEEEEEEeecCCCCCCCcccEEEEEEeeCCCCC----CC
Q 021635 144 AYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVLYTNYGKQKKPEKTNWVMHQYHLGGNEE----EK 219 (310)
Q Consensus 144 ky~~G~RkrR~~~~~~~gG~G~Wk~tGk~k~I~~~G~vvG~KK~LvFY~~~G~~~~g~KT~WvMhEY~L~~~~~----~k 219 (310)
+|++|.|++|++ ++|+||+||++++|..+|.+||+||+|+||. |+++++.||+|+||||+|..... ..
T Consensus 82 k~~~g~R~~R~t------~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~l~~~~~~~~~~~ 153 (171)
T 1ut7_A 82 KYPNGSRPNRVA------GSGYWKATGTDKIISTEGQRVGIKKALVFYI--GKAPKGTKTNWIMHEYRLIEPSRRNGSTK 153 (171)
T ss_dssp -------CCEEE------TTEEEEEEEEEEEEEETTEEEEEEEEEEEEE--SSTTSCEEEEEEEEEEEECCCC-------
T ss_pred ccCCCCcccccC------CCCEEeccCCCceEEecCcEEEEEEEEEEEc--CcCCCCCcCCeEEEEEEcCCCccccCccc
Confidence 999999999997 4699999999999999999999999999999 88899999999999999988752 24
Q ss_pred CCCEEEEEEEeeCCC
Q 021635 220 DGELVVSKVFYQTQP 234 (310)
Q Consensus 220 ~~e~VLCKIf~k~~~ 234 (310)
.++|||||||+|...
T Consensus 154 ~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 154 LDDWVLCRIYKKQSS 168 (171)
T ss_dssp -CCEEEEEEEECC--
T ss_pred CCCEEEEEEEEcCCC
Confidence 589999999999764
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-47 Score=339.12 Aligned_cols=151 Identities=32% Similarity=0.569 Sum_probs=125.6
Q ss_pred ccCCCCCCCceeeCCChHHHHHH-HHHHHhcCcCCCCCcccccccccccccCccCCCCCCCCCcccCCc-eEEEEecCCC
Q 021635 66 IHDLPGLPAGVKFDPTDQELLEH-LEAKVRADARKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGL-IRHFFHRPSK 143 (310)
Q Consensus 66 ~~~~~~LPpGfRF~PTDeELI~y-L~~Kv~g~~~~~~Plid~fIp~id~e~DVy~~~PweLPg~~~dG~-~~yFF~~~~k 143 (310)
++...+|||||||+|||||||.| |++|+.+. |++..+|+++ |||.+|||+||+.+..|+ .||||+++.+
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~-----~~~~~~I~ev----Dvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ 79 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQ-----RLPVPIIAEV----DLYKFDPWDLPERALFGAREWYFFTPRDR 79 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTC-----CCSSSCCEEC----CGGGSCGGGSGGGCSSCSSEEEEEEECCC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCC-----CCCcCeeeec----ccccCCchhhhhhhccCCceEEEEecccc
Confidence 45567999999999999999985 99999984 4555778754 799999999999886655 5778888889
Q ss_pred CCCCCCcccccccccCCCCccEEeecCCCeeEeeCCEEEEEEEEEEEEeecCCCCCCCcccEEEEEEeeCCCCCC-----
Q 021635 144 AYTTGTRKRRKVHTDEQGGETRWHKTGKTRPVFIGGKVKGYKKILVLYTNYGKQKKPEKTNWVMHQYHLGGNEEE----- 218 (310)
Q Consensus 144 ky~~G~RkrR~~~~~~~gG~G~Wk~tGk~k~I~~~G~vvG~KK~LvFY~~~G~~~~g~KT~WvMhEY~L~~~~~~----- 218 (310)
+|++|.|++|++ +.|+||+||++++|..+|.+||+||+|+||. |+++++.||+|+||||+|......
T Consensus 80 ky~~g~R~nR~t------~~G~WkatG~dk~I~~~g~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~L~~~~~~~~~~~ 151 (174)
T 3ulx_A 80 KYPNGSRPNRAA------GNGYWKATGADKPVAPRGRTLGIKKALVFYA--GKAPRGVKTDWIMHEYRLADAGRAAAGAK 151 (174)
T ss_dssp -----CCSCEEE------TTEEEEECSCCEEECCSSSCCEEEEEEEEEE--SSTTSCEEEEEEEEEEEECSCC-------
T ss_pred ccCCCCCceeec------CCceEccCCCCcEEeeCCcEEEEEEEEEEec--CCCCCCCcCCeEEEEEEeCCCCCcccccc
Confidence 999999999997 4699999999999999999999999999999 889999999999999999886431
Q ss_pred ----CCCCEEEEEEEeeCC
Q 021635 219 ----KDGELVVSKVFYQTQ 233 (310)
Q Consensus 219 ----k~~e~VLCKIf~k~~ 233 (310)
..++|||||||+|..
T Consensus 152 ~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 152 KGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ----CCSSEEEEEEEESCC
T ss_pred cCCCCCCCEEEEEEEEcCC
Confidence 247899999998864
No 3
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=58.46 E-value=1.7 Score=46.65 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=48.5
Q ss_pred CCccceeecccCCCCCCCCCCCCCCCCCCCCccc------hhhcccccccCCCCCCcccccchhcccC-CC-CCCCceee
Q 021635 7 CSDVQTIERISSPPSSSTNNNNNNNNNTSNSSSS------AKAKNCLVRSCPSCGHQIKCNEQARIHD-LP-GLPAGVKF 78 (310)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~LPpGfRF 78 (310)
.-|+..|+.+++.++...+....+.-|++-+... ..........||.||+.|.-+...++.+ .. .+|.|=|+
T Consensus 70 ~p~vd~i~gl~pai~i~q~~~~~n~rstvgt~tei~~~lrll~ar~g~~~cp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (916)
T 3pih_A 70 KPDVDEIEGLSPAIAIDQKTVSHNPRSTVGTVTEIYDYLRVLYARIGKAHCPECGRPLEKKSIDEILQDLFNSFKEGSRI 149 (916)
T ss_dssp CCSCSEEETCCCEEEECSCC-CCSTTCBHHHHTTHHHHHHHHHHHSCEEBCTTTCCBCBCCCHHHHHHHHHHHSCTTCEE
T ss_pred CCCcCeecCCCceEEEEecCCCCCCCCCceeHHHHHHHHHHHHHhcCCcCCCCCCCCcccCCHHHHHHHHHHhCCCCCEE
Confidence 4578889999888777666666666677766443 3345567789999999999875544333 22 57777654
No 4
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=51.01 E-value=7.4 Score=27.25 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=9.3
Q ss_pred cccccCCCCCCccc
Q 021635 46 CLVRSCPSCGHQIK 59 (310)
Q Consensus 46 ~~~~~~~~~~~~~~ 59 (310)
-+...||.||.+|=
T Consensus 21 lP~IrCpyCGyrii 34 (48)
T 4ayb_P 21 LPGVRCPYCGYKII 34 (48)
T ss_dssp CSSSCCTTTCCSCE
T ss_pred CCCcccCccCcEEE
Confidence 35667777777764
No 5
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.35 E-value=7.1 Score=28.73 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=12.9
Q ss_pred ccccccCCCCCCccccc
Q 021635 45 NCLVRSCPSCGHQIKCN 61 (310)
Q Consensus 45 ~~~~~~~~~~~~~~~~~ 61 (310)
......||.|||+|=..
T Consensus 35 ~~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 35 AKEVIRCRECGHRVMYK 51 (63)
T ss_dssp SSSCCCCSSSCCCCCBC
T ss_pred CCCceECCCCCcEEEEE
Confidence 44668899999998653
No 6
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.78 E-value=13 Score=28.07 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCceeeCC-ChHHHHHHHHHHHhcCc
Q 021635 73 PAGVKFDP-TDQELLEHLEAKVRADA 97 (310)
Q Consensus 73 PpGfRF~P-TDeELI~yL~~Kv~g~~ 97 (310)
|.|+.|+. |++||-.||..++..+.
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~k 62 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEGR 62 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCCe
Confidence 66899999 99999999999999854
No 7
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=41.31 E-value=15 Score=34.25 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=32.5
Q ss_pred cccccccCCCCCCcccccchhcccCC-CCCC-CceeeCCChHHHHHHHH
Q 021635 44 KNCLVRSCPSCGHQIKCNEQARIHDL-PGLP-AGVKFDPTDQELLEHLE 90 (310)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LP-pGfRF~PTDeELI~yL~ 90 (310)
.+..+..||+|+..|-..|. .+| --.| .|++|.++-.|.|..|.
T Consensus 20 ~~~l~~kc~~~~~~~~~~~l---~~~~~v~~~~~~~~r~~arerI~~L~ 65 (304)
T 2f9y_B 20 PEGVWTKCDSCGQVLYRAEL---ERNLEVCPKCDHHMRMTARNRLHSLL 65 (304)
T ss_dssp ---CEECCTTTCCCEETTHH---HHTTTBCTTTCCBCCCCHHHHHHHHS
T ss_pred CHHHHHhhhhccchhhHHHH---HHHhCCCCCCCCCCCCCHHHHHHHHC
Confidence 35678999999999987662 234 4466 79999999999988764
No 8
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=38.00 E-value=7 Score=42.27 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCccceeecccCCCCCCCCCCCCCCCCCCCCccc------hhhcccccccCCCCCCcccccchh-cccCCCCCCCceee
Q 021635 7 CSDVQTIERISSPPSSSTNNNNNNNNNTSNSSSS------AKAKNCLVRSCPSCGHQIKCNEQA-RIHDLPGLPAGVKF 78 (310)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LPpGfRF 78 (310)
..|+..|+.+++.++...+....+.-|++-+... ..........||.||..|.-+... .+.....+|.|=||
T Consensus 90 kp~vd~i~gl~paiai~Q~~~~~n~RSTvgT~Tei~d~lrllfar~g~~~cp~~~~~i~~~t~~~~~~~~~~~~~~~~~ 168 (972)
T 2r6f_A 90 KPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQMVDRLLSYPERTKM 168 (972)
T ss_dssp CCSEEEEESCCCEEEESSTTSCCCTTCBHHHHTSHHHHHHHHHHHTCEEBCTTTCCBCCCCCHHHHHHHHHTSCTTCEE
T ss_pred CCCcceecCCCceEEEECCCCCcCCCchhHHHHHHHHHHHHHHhccCcccCCCCCCccccCCHHHHHHHHHhCCCCCEE
Confidence 4577889998888777666666666777766442 334556778999999999764333 23444567777553
No 9
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.50 E-value=13 Score=26.57 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=13.4
Q ss_pred cccccCCCCCCcccccc
Q 021635 46 CLVRSCPSCGHQIKCNE 62 (310)
Q Consensus 46 ~~~~~~~~~~~~~~~~~ 62 (310)
..++.||+|+..|+-++
T Consensus 4 ~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCTTTCCCCSSCC
T ss_pred ccceECcCCCCeeEeCC
Confidence 34689999999998754
No 10
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=37.08 E-value=6.9 Score=42.40 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=48.2
Q ss_pred CCccceeecccCCCCCCCCCCCCCCCCCCCCccc------hhhcccccccCCCCCCcccccchh-cccCCCCCCCceee
Q 021635 7 CSDVQTIERISSPPSSSTNNNNNNNNNTSNSSSS------AKAKNCLVRSCPSCGHQIKCNEQA-RIHDLPGLPAGVKF 78 (310)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LPpGfRF 78 (310)
..|+..||.+++.++...+....+.-|++-+... ..........||.||..|.-+... .+.....+|.|=||
T Consensus 92 kp~vd~i~gl~paiai~Qk~~~~n~RSTvgT~Tei~d~lrllfar~g~~~cp~~~~~i~~~t~~~~~~~~~~~~~~~~~ 170 (993)
T 2ygr_A 92 KPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPHCPTCGERVARQTPQQIVDQVLAMPEGTRF 170 (993)
T ss_dssp CCCEEEEESCCCEEEECCCCCCCCTTCBHHHHTSHHHHHHHHHHHSSCCBCSSTTCBCBCCCHHHHHHHHHTSCSSCCE
T ss_pred CCCcceecCCCceEEEEcCCCCcCCCchhHHHHHHHHHHHHHHhccCCccCCCCCCccccCCHHHHHHHHHhCCCCCEE
Confidence 4577889998888777666666666677666442 334556778999999999764332 23444567777554
No 11
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=35.88 E-value=13 Score=25.91 Aligned_cols=10 Identities=40% Similarity=1.262 Sum_probs=7.8
Q ss_pred ccCCCCCCcc
Q 021635 49 RSCPSCGHQI 58 (310)
Q Consensus 49 ~~~~~~~~~~ 58 (310)
..||+|||+-
T Consensus 16 ~~Cp~Cg~~~ 25 (57)
T 1qyp_A 16 ITCPKCGNDT 25 (57)
T ss_dssp CCCTTTCCSE
T ss_pred eECCCCCCCE
Confidence 5799999843
No 12
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=35.16 E-value=12 Score=27.90 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=12.4
Q ss_pred ccccccCCCCCCccccc
Q 021635 45 NCLVRSCPSCGHQIKCN 61 (310)
Q Consensus 45 ~~~~~~~~~~~~~~~~~ 61 (310)
......||.|||+|-..
T Consensus 42 ~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 42 RTDAVRCKDCGHRILLK 58 (70)
T ss_dssp TTSTTCCSSSCCCCCBC
T ss_pred CCCCccCCCCCceEeEe
Confidence 33456899999988653
No 13
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.85 E-value=24 Score=24.66 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=19.2
Q ss_pred ccCCCCCCcccccchhcccCCCCCCCceeeC
Q 021635 49 RSCPSCGHQIKCNEQARIHDLPGLPAGVKFD 79 (310)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~ 79 (310)
-.|+.||+..|-.. -....++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~---Gdp~~gi~pGt~f~ 31 (52)
T 1e8j_A 4 YVCTVCGYEYDPAK---GDPDSGIKPGTKFE 31 (52)
T ss_dssp EECSSSCCCCCTTT---CCTTTTCCSSCCTT
T ss_pred EEeCCCCeEEcCCc---CCcccCcCCCCchH
Confidence 47999999987421 12345788887764
No 14
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=27.37 E-value=31 Score=26.90 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=26.3
Q ss_pred cccccCCCCCCcccccchhcccCCCCCCCceeeCCC
Q 021635 46 CLVRSCPSCGHQIKCNEQARIHDLPGLPAGVKFDPT 81 (310)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~PT 81 (310)
.....||.||-..-..+. ......+|+|..|+|.
T Consensus 46 ~g~~~CpYCg~~y~~~~~--~~~~et~p~~c~~~~~ 79 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPS--LSYNQTNPTGCLYNPK 79 (87)
T ss_dssp CCEECCTTTCCEEECCTT--SCTTCCCSSCCBCCCS
T ss_pred CCeEECCCCCCEeEcCCC--CCcCCcCCCCcEecCc
Confidence 356799999998876553 4456689999999875
No 15
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=27.15 E-value=24 Score=20.49 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.1
Q ss_pred CCChHHHHHHHHHH
Q 021635 79 DPTDQELLEHLEAK 92 (310)
Q Consensus 79 ~PTDeELI~yL~~K 92 (310)
.+.|.+|+.||+.|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 46799999998765
No 16
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.84 E-value=21 Score=25.26 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=19.1
Q ss_pred ccCCCCCCcccccchhcccCCCCCCCceeeC
Q 021635 49 RSCPSCGHQIKCNEQARIHDLPGLPAGVKFD 79 (310)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~ 79 (310)
-.|+.||+..|-.. -...-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~---Gdp~~gi~pGt~f~ 31 (55)
T 2v3b_B 4 WQCVVCGFIYDEAL---GLPEEGIPAGTRWE 31 (55)
T ss_dssp EEETTTCCEEETTT---CBTTTTBCTTCCGG
T ss_pred EEeCCCCeEECCCc---CCcccCcCCCCChh
Confidence 47999999987432 22345788887763
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.75 E-value=40 Score=27.75 Aligned_cols=10 Identities=40% Similarity=1.242 Sum_probs=8.5
Q ss_pred cccCCCCCCc
Q 021635 48 VRSCPSCGHQ 57 (310)
Q Consensus 48 ~~~~~~~~~~ 57 (310)
...||.||+.
T Consensus 107 ~~~CP~Cgs~ 116 (139)
T 3a43_A 107 FLACPKCGSH 116 (139)
T ss_dssp GCSCSSSSCC
T ss_pred CCcCccccCC
Confidence 5689999986
No 18
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.30 E-value=22 Score=25.18 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=18.9
Q ss_pred ccCCCCCCcccccchhcccCCCCCCCceeeC
Q 021635 49 RSCPSCGHQIKCNEQARIHDLPGLPAGVKFD 79 (310)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~ 79 (310)
-.|+.||+..|-.. -...-++|||-+|.
T Consensus 4 y~C~vCGyvYd~~~---Gdp~~gi~pGt~fe 31 (54)
T 4rxn_A 4 YTCTVCGYIYDPED---GDPDDGVNPGTDFK 31 (54)
T ss_dssp EEETTTCCEECTTT---CBGGGTBCTTCCGG
T ss_pred eECCCCCeEECCCc---CCcccCcCCCCChh
Confidence 47999999987531 12234788887774
No 19
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.30 E-value=37 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=19.5
Q ss_pred cccCCCCCCcccccchhcccCCCCCCCceee
Q 021635 48 VRSCPSCGHQIKCNEQARIHDLPGLPAGVKF 78 (310)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF 78 (310)
.-.|+.||+..|-.. =...-++|||-.|
T Consensus 7 ~y~C~vCGyiYd~~~---Gdp~~gi~pGT~f 34 (70)
T 1dx8_A 7 KYECEACGYIYEPEK---GDKFAGIPPGTPF 34 (70)
T ss_dssp CEEETTTCCEECTTT---CCTTTTCCSSCCG
T ss_pred eEEeCCCCEEEcCCC---CCcccCcCCCCch
Confidence 358999999987421 2334578888776
No 20
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.23 E-value=21 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.773 Sum_probs=13.1
Q ss_pred ccccccCCCCCCcccccc
Q 021635 45 NCLVRSCPSCGHQIKCNE 62 (310)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~ 62 (310)
...+..|| ||..|+...
T Consensus 18 ~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 18 GAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp TCSEEEET-TTEEEECCS
T ss_pred CCcEEECC-CCCeeeece
Confidence 34568999 999998754
No 21
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.08 E-value=33 Score=26.32 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=20.5
Q ss_pred ccccCCCCCCcccccchhcccCCCCCCCceeeC
Q 021635 47 LVRSCPSCGHQIKCNEQARIHDLPGLPAGVKFD 79 (310)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~ 79 (310)
..-.|+.||+..|-.. -...-++|||-.|.
T Consensus 26 ~~y~C~vCGyvYD~~~---Gdp~~gI~pGT~fe 55 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEAL---GWPEDGIAAGTRWD 55 (81)
T ss_dssp CEEEETTTCCEEETTT---CBTTTTBCTTCCTT
T ss_pred ceEEeCCCCEEEcCCc---CCcccCcCCCCChh
Confidence 4568999999987421 22345788887764
Done!