BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021636
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 304 bits (779), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 206/305 (67%), Gaps = 13/305 (4%)
Query: 5 IPVIDFNELEGENRKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYEEYLKG 64
P+I +++ G R T + ACE WGFF++ NHGI +++ + V++ HY++ +
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 65 GFYDSELVKSLEKENKNNIRDVDWESTFFIWHRPSSNINEIRNLSEDFRNTMEDYIAQLI 124
F + K+LE + + D DWESTFF+ H P SNI+E+ +L E++R D+ +L
Sbjct: 64 RFKELVASKALEG-VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLE 122
Query: 125 KLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVGTKVAKYPQCPYPELVRGLREHTDAGG 184
KLAE+L +L+CENLGLEK Y+KNAF G KGP+ GTKV+ YP CP P+L++GLR HTDAGG
Sbjct: 123 KLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGG 182
Query: 185 IILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKN 244
IILL QDD+V GL+ KDG+W+ +PP R ++I VN GDQ+EV++NG+Y+S HRV+ +K+
Sbjct: 183 IILLFQDDKVSGLQLLKDGQWIDVPPXR-HSIVVNLGDQLEVITNGKYKSVXHRVIAQKD 241
Query: 245 GSRLSIATFYNPANDAIISPAIKL----------LYPSYYSFQDYLKLYGTTKFSDKVPR 294
G+R S+A+FYNP +DA+I PA L +YP + F DY KLY KF K PR
Sbjct: 242 GARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFV-FDDYXKLYAGLKFQAKEPR 300
Query: 295 LESMK 299
E+ K
Sbjct: 301 FEAXK 305
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 25/275 (9%)
Query: 5 IPVIDFNELEGEN---RKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYEEY 61
+P ID +E ++ R+ + L +A WG + NHGI LME+VK+ +
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 62 L--KGGFYDSELVKSLE----KENKNNIRDVDWESTFFIWHRPSSNINEIRNLS------ 109
+ K + + + ++ K N ++WE FF P E R+LS
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP----EEKRDLSIWPKTP 161
Query: 110 EDFRNTMEDYIAQLIKLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVGTKVAKYPQCPY 169
D+ +Y L LA K+ + + LGLE ++ G + + K+ YP+CP
Sbjct: 162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 221
Query: 170 PELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWV--KIPPSRNNTIFVNTGDQVEVL 227
PEL G+ HTD + +L + VPGL+ F +G+WV K P ++I ++ GD +E+L
Sbjct: 222 PELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVP---DSIVMHIGDTLEIL 277
Query: 228 SNGRYQSALHRVMPEKNGSRLSIATFYNPANDAII 262
SNG+Y+S LHR + K R+S A F P D I+
Sbjct: 278 SNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 25/275 (9%)
Query: 5 IPVIDFNELEGEN---RKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYEEY 61
+P ID +E ++ R+ + L +A WG + NHGI LME+VK+ +
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 62 L--KGGFYDSELVKSLE----KENKNNIRDVDWESTFFIWHRPSSNINEIRNLS------ 109
+ K + + + ++ K N ++WE FF P E R+LS
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP----EEKRDLSIWPKTP 162
Query: 110 EDFRNTMEDYIAQLIKLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVGTKVAKYPQCPY 169
D+ +Y L LA K+ + + LGLE ++ G + + K+ YP+CP
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 222
Query: 170 PELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWV--KIPPSRNNTIFVNTGDQVEVL 227
PEL G+ HTD + +L + VPGL+ F +G+WV K P ++I ++ GD +E+L
Sbjct: 223 PELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVP---DSIVMHIGDTLEIL 278
Query: 228 SNGRYQSALHRVMPEKNGSRLSIATFYNPANDAII 262
SNG+Y+S LHR + K R+S A F P D I+
Sbjct: 279 SNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 25/275 (9%)
Query: 5 IPVIDFNELEGEN---RKKTMALLHQACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYEEY 61
+P ID +E ++ R+ + L +A WG + NHGI L E+VK+ +
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 62 L--KGGFYDSELVKSLE----KENKNNIRDVDWESTFFIWHRPSSNINEIRNLS------ 109
+ K + + + ++ K N ++WE FF P E R+LS
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP----EEKRDLSIWPKTP 162
Query: 110 EDFRNTMEDYIAQLIKLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVGTKVAKYPQCPY 169
D+ +Y L LA K+ + + LGLE ++ G + + K+ YP+CP
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQ 222
Query: 170 PELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWV--KIPPSRNNTIFVNTGDQVEVL 227
PEL G+ HTD + +L + VPGL+ F +G+WV K P ++I + GD +E+L
Sbjct: 223 PELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVP---DSIVXHIGDTLEIL 278
Query: 228 SNGRYQSALHRVMPEKNGSRLSIATFYNPANDAII 262
SNG+Y+S LHR + K R+S A F P D I+
Sbjct: 279 SNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 110/261 (42%), Gaps = 43/261 (16%)
Query: 27 QACEKWGFFQVDNHGIDKKLMEKVKQLVNSHYEEYLKGGF------YDSELVKSLEKENK 80
++ + GF + NH IDK+L+E++ + + K F +D S+ + K
Sbjct: 20 ESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASISETAK 79
Query: 81 -NNIRDVDWESTFFIWHRPSSNINEIRNLSEDFRNTMEDYIAQLIKLAEKLSELMCENLG 139
+ ++D+ + W R + + R A ++ EK + L E L
Sbjct: 80 GHTVKDIKEYYHVYPWGR----------IPDSLR-------ANILAYYEKANTLASELLE 122
Query: 140 LEKSY----IKNAFSGEKGPSVGT------KVAKYPQCPYPELVRGLRE--HTDAGGIIL 187
++Y IK FS + ++ YP E +R H D +I
Sbjct: 123 WIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDIN-LIT 181
Query: 188 LLQDDQVPGLEF-FKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVM-PE--- 242
+L PGL+ KDG W+ +P N I +N GD ++ S+G + S HRV+ PE
Sbjct: 182 VLPTANEPGLQVKAKDGSWLDVPSDFGN-IIINIGDXLQEASDGYFPSTSHRVINPEGTD 240
Query: 243 KNGSRLSIATFYNPANDAIIS 263
K SR+S+ F +P ++S
Sbjct: 241 KTKSRISLPLFLHPHPSVVLS 261
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 120/300 (40%), Gaps = 52/300 (17%)
Query: 5 IPVIDFNELEGENRKKTMALLHQ---ACEKWGFFQVDNHGID-KKLMEKVKQL------- 53
+P ID + L G+++ M + Q A GFF NHGI+ ++L +K K+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 54 ---------VNSHYEEYLKGGFYDS----ELVKSLEKENKNNIRDVDWESTFFIWHRPSS 100
N +++ ++ G+Y S + V+S N N D P+
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPD----HPRIQAKTPTH 124
Query: 101 NINEIRNLSED--FRNTMEDYIAQLIKLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVG 158
+N + ++ F++ E Y + L+ L + LG E+++ F + +
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLA-S 183
Query: 159 TKVAKYPQC-PYPELV---------RGLREHTDAGGIILLLQDD----QVPGLEFFKDGE 204
+ +YP PYPE H D I +L Q + QV ++D E
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIE 243
Query: 205 WVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISP 264
+ + +N G + L+N Y++ +HRV N R S+ F N D++I P
Sbjct: 244 ------ADDTGYLINCGSYMAHLTNNYYKAPIHRVK-WVNAERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 120/300 (40%), Gaps = 52/300 (17%)
Query: 5 IPVIDFNELEGENRKKTMALLHQ---ACEKWGFFQVDNHGID-KKLMEKVKQL------- 53
+P ID + L G+++ M + Q A GFF NHGI+ ++L +K K+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 54 ---------VNSHYEEYLKGGFYDS----ELVKSLEKENKNNIRDVDWESTFFIWHRPSS 100
N +++ ++ G+Y S + V+S N N D P+
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPD----HPRIQAKTPTH 124
Query: 101 NINEIRNLSED--FRNTMEDYIAQLIKLAEKLSELMCENLGLEKSYIKNAFSGEKGPSVG 158
+N + ++ F++ E Y + L+ L + LG E+++ F + +
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLA-S 183
Query: 159 TKVAKYPQC-PYPELV---------RGLREHTDAGGIILLLQDD----QVPGLEFFKDGE 204
+ +YP PYPE H D I +L Q + QV ++D E
Sbjct: 184 VVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIE 243
Query: 205 WVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISP 264
+ + +N G + L+N Y++ +HRV N R S+ F N D++I P
Sbjct: 244 ------ADDTGYLINCGSYMAHLTNNYYKAPIHRVK-WVNAERQSLPFFVNLGYDSVIDP 296
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 129 KLSELMCENLGLEKSYIKNAFSGEKGPSVGTKVAKYPQCPYPELVRGLRE--HTDAGGII 186
K+ E + L LE+ + K + G SV ++ YP P P+ G+R H D I
Sbjct: 144 KVLEAIATYLKLERDFFKPTV--QDGNSV-LRLLHYP--PIPKDATGVRAGAHGDINTIT 198
Query: 187 LLLQDDQVPGLEFF-KDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVM---PE 242
LLL ++ GLE +DG+W+ I P + +N GD +E L+N S +HRV+ PE
Sbjct: 199 LLLGAEEG-GLEVLDRDGQWLPINPP-PGCLVINIGDXLERLTNNVLPSTVHRVVNPPPE 256
Query: 243 KNG-SRLSIATFYNPAND 259
+ G R S F + A+D
Sbjct: 257 RRGVPRYSTPFFLHFASD 274
>pdb|3SP8|A Chain A, Crystal Structure Of Nk2 In Complex With Fractionated
Heparin Dp10
pdb|3SP8|B Chain B, Crystal Structure Of Nk2 In Complex With Fractionated
Heparin Dp10
Length = 264
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 140 LEKSYIKNAFSGEKGPSVGT-------KVAKYPQCPYPELV-------RGLREHTDAGGI 185
L+++Y +N E GP T +V PQC E + RGL +HT++G I
Sbjct: 147 LQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEVECMTSNGESYRGLMDHTESGKI 206
Query: 186 ILLLQDDQVPGLEFF 200
D Q P F
Sbjct: 207 CQRW-DHQTPHRHKF 220
>pdb|3HN4|A Chain A, Crystal Structure Of The Nk2 Fragment (28-289) Of Human
Hepatocyte Growth FactorSCATTER FACTOR
Length = 264
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 140 LEKSYIKNAFSGEKGPSVGT-------KVAKYPQCPYPELV-------RGLREHTDAGGI 185
L+++Y +N E GP T +V PQC E + RGL +HT++G I
Sbjct: 147 LQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEVECMTANGESYRGLMDHTESGKI 206
Query: 186 ILLLQDDQVPGLEFF 200
D Q P F
Sbjct: 207 CQRW-DHQTPHRHKF 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,926,835
Number of Sequences: 62578
Number of extensions: 422891
Number of successful extensions: 1236
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 15
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)