BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021637
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ANI|A Chain A, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|B Chain B, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|E Chain E, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|F Chain F, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 213
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
++ L +LS R LR+ ADF+NFR+RT +E + + LL VLDNFERA
Sbjct: 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA- 125
Query: 225 TQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRV 275
+K++T+ E+ I + +Y+ LV+ L GV +E VG PFDP + V
Sbjct: 126 --LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAV 176
>pdb|3A6M|A Chain A, Crystal Structure Of Grpe From Thermus Thermophilus Hb8
pdb|3A6M|B Chain B, Crystal Structure Of Grpe From Thermus Thermophilus Hb8
Length = 177
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207
+E L++ E LE ++ EEL + + LR+ ADFDN+RKR E+E +
Sbjct: 10 LEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVL 69
Query: 208 EVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPF 267
+ + LL VLD+ +RA ++ E I ++I IL LGV V G F
Sbjct: 70 KALRALLPVLDDLDRA---LEFAEASPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAF 126
Query: 268 DPLVKPRVGL 277
DP VGL
Sbjct: 127 DPRYHEAVGL 136
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 147 EIEALLKSFEDEKID-LERKVVNLSEELSA----ERARILRISADFDNFRKRTEKERLSL 201
EIEA+ E++D + KV NL +L+ ER ILR+ A+ +N R+RTE +
Sbjct: 24 EIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKA 83
Query: 202 VTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSI---YKQLVEILGSLGVV 258
A + + LL V+D+ +RA ++V + ++ + I K +++++ GV
Sbjct: 84 HKFALEKFINELLPVIDSLDRA---LEVADKANPDMSAMVEDIELTLKSMLDVVRKFGVE 140
Query: 259 PVETVGNPFDPLVKPRVGL 277
+ P DP V + +
Sbjct: 141 VIAETNVPLDPNVHQAIAM 159
>pdb|1ASU|A Chain A, Avian Sarcoma Virus Integrase Catalytic Core Domain
Crystallized From 2% Peg 400, 2m Ammonium Sulfate, Hepes
Ph 7.5
Length = 162
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
+R+ A+ D F KR + T+ QGE++ + + L++FER +
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERGE 156
>pdb|1ASV|A Chain A, Avian Sarcoma Virus Integrase Catalytic Core Domain
Length = 162
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
+R+ A+ D F KR + T+ QGE++ + + L++FER +
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERGE 156
>pdb|1A5V|A Chain A, Asv Integrase Core Domain With Hiv-1 Integrase Inhibitor
Y3 And Mn Cation
pdb|1A5W|A Chain A, Asv Integrase Core Domain With Hiv-1 Integrase Inhibitor
Y3
pdb|1A5X|A Chain A, Asv Integrase Core Domain With Hiv-1 Integrase Inhibitor
Y3
Length = 158
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
+R+ A+ D F KR + T+ QGE++ + + L++FER +
Sbjct: 116 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERGE 152
>pdb|1CZ9|A Chain A, Atomic Resolution Asv Integrase Core Domain (D64n) From
Citrate
Length = 162
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
+R+ A+ D F KR + T+ QGE++ + + L++FER +
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERGE 156
>pdb|1CXQ|A Chain A, Atomic Resolution Asv Integrase Core Domain From Ammonium
Sulfate
pdb|1CXU|A Chain A, 1.42a Resolution Asv Integrase Core Domain From Citrate
pdb|1CZB|A Chain A, Atomic Resolution Asv Integrase Core Domain From Hepes
Length = 162
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
+R+ A+ D F KR + T+ QGE++ + + L++FER +
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERGE 156
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 4 VIKTPPFHASSLPA-TRAAPISLKSPKPICLSFRQRLISTSRLY 46
V+ TPPF +S+LP TR A I L K + + R++++S LY
Sbjct: 207 VLFTPPFTSSALPGITRDAIIKLA--KELGIEVREQVLSRESLY 248
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 4 VIKTPPFHASSLPA-TRAAPISLKSPKPICLSFRQRLISTSRLY 46
V+ TPPF +S+LP TR A I L K + + R++++S LY
Sbjct: 206 VLFTPPFTSSALPGITRDAIIKLA--KELGIEVREQVLSRESLY 247
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 244 IYKQLVEILGSLGVVPVETVGNPFD 268
IYK +V+I GS+ +PV VGN D
Sbjct: 101 IYKLIVQIKGSVEDIPVMLVGNKCD 125
>pdb|3AIS|A Chain A, Crystal Structure Of A Mutant Beta-Glucosidase In Wheat
Complexed With Dimboa-Glc
Length = 565
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 187 FDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT------------EGE 234
+D+F T ER+S +TN G+V + + +A + ++ +G
Sbjct: 103 WDHF-CHTYPERISDMTN--GDVAANSYHLYEEDVKALKDMGMKVYRFSISWSRILPDGT 159
Query: 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP-LVKPRVGLKISR-VLDEFSQILNQ 292
K+N + Y +L+ L +VP T+ + P ++ + G ++R ++D++ Q
Sbjct: 160 GKVNQAGIDYYNKLINSLIDNDIVPYVTIWHWDTPQALEDKYGGFLNRQIVDDYKQFAEV 219
Query: 293 VCSGF---VKTWTTF 304
F VK W TF
Sbjct: 220 CFKNFGDRVKNWFTF 234
>pdb|2DGA|A Chain A, Crystal Structure Of Hexameric Beta-Glucosidase In Wheat
pdb|3AIQ|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
With An Aglycone Dimboa
pdb|3AIR|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
With 2-Deoxy- 2-Fluoroglucoside And Dinitrophenol
Length = 565
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 187 FDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT------------EGE 234
+D+F T ER+S +TN G+V + + +A + ++ +G
Sbjct: 103 WDHF-CHTYPERISDMTN--GDVAANSYHLYEEDVKALKDMGMKVYRFSISWSRILPDGT 159
Query: 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP-LVKPRVGLKISR-VLDEFSQILNQ 292
K+N + Y +L+ L +VP T+ + P ++ + G ++R ++D++ Q
Sbjct: 160 GKVNQAGIDYYNKLINSLIDNDIVPYVTIWHWDTPQALEDKYGGFLNRQIVDDYKQFAEV 219
Query: 293 VCSGF---VKTWTTF 304
F VK W TF
Sbjct: 220 CFKNFGDRVKNWFTF 234
>pdb|2C5I|T Chain T, N-Terminal Domain Of Tlg1 Complexed With N-Terminus Of
Vps51 In Distorted Conformation
Length = 101
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 141 DDTKAAEIEALLKSFEDEKIDLERKVV----NLSEELSAERARILRISADFDNFRKR 193
DD + EI+ +LK E+ +DL+R ++ + +E++S A++ I D + R
Sbjct: 34 DDDQEEEIQDILKDVEETIVDLDRSIIVXKRDENEDVSGREAQVKNIKQQLDALKLR 90
>pdb|2C5J|A Chain A, N-Terminal Domain Of Tlg1, Domain-Swapped Dimer
pdb|2C5J|B Chain B, N-Terminal Domain Of Tlg1, Domain-Swapped Dimer
pdb|2C5K|T Chain T, N-Terminal Domain Of Tlg1 Complexed With N-Terminus Of
Vps51
Length = 95
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 141 DDTKAAEIEALLKSFEDEKIDLERKVV----NLSEELSAERARILRISADFDNFRKR 193
DD + EI+ +LK E+ +DL+R ++ + +E++S A++ I D + R
Sbjct: 34 DDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLR 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,714,631
Number of Sequences: 62578
Number of extensions: 225667
Number of successful extensions: 818
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 29
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)