BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021637
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5GHN3|GRPE_SYNPW Protein GrpE OS=Synechococcus sp. (strain WH7803) GN=grpE PE=3 SV=1
Length = 240
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 112 SDDTSDAEEAPTSFI------METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERK 165
S D S E+ P + +ET E +++D AAE+ + E LER+
Sbjct: 2 SGDASTPEQDPAQVVADGQQPVETPNDPVETPSASDPGSAAEVSPQTGNNEARLEQLERE 61
Query: 166 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225
L +E R + +RI+ADFDNFRKR +++ L + +L V+DNFERA+
Sbjct: 62 HTTLRDEHDVLRGQYMRIAADFDNFRKRQSRDQDDLKIQLTCSTLSEILPVVDNFERARQ 121
Query: 226 QIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
Q+ Q E + ++ SYQ +YKQLV++L LGV P+ VG FDP
Sbjct: 122 QLDPQGEEAQALHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDP 165
>sp|Q59978|GRPE_SYNY3 Protein GrpE OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=grpE PE=3 SV=1
Length = 249
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 69/100 (69%)
Query: 170 SEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKV 229
SE+L + + R + ++A+FDNFRKRT++E+ +G + LL V+DNFERA+TQIK
Sbjct: 90 SEQLDSIKKRYVALAAEFDNFRKRTQREKEEQAKLIKGRTITELLPVVDNFERARTQIKP 149
Query: 230 QTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
++GE +I+ SYQ +YK LV+ L LGV P+ G PFDP
Sbjct: 150 NSDGENQIHKSYQGVYKNLVDSLKGLGVAPMRPEGKPFDP 189
>sp|Q8DJB3|GRPE_THEEB Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE
PE=3 SV=1
Length = 252
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%)
Query: 109 GAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVN 168
G + DT D + + +E +++ EA +D + A ++ LE +
Sbjct: 30 GEITPDTPDTVDKVENTPVENVENPAEATPGEEDQASEATSANAADLLEQIAALEAAKAS 89
Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
LS+ + ++ +R++ADF+NFRKRT++E+ L + V+ LL V+D+FE A+T I+
Sbjct: 90 LSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTHIQ 149
Query: 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+TE EEKI+ SYQ +YKQLVE L +GV ++ G PFDP
Sbjct: 150 TETEAEEKIHRSYQGVYKQLVECLKRIGVSAMQAKGKPFDP 190
>sp|Q59984|GRPE_SYNE7 Protein GrpE OS=Synechococcus elongatus (strain PCC 7942) GN=grpE
PE=3 SV=2
Length = 207
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 66/101 (65%)
Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
L EL + + LR++ADF+NFR+RT KER L ++ + LL V+DNF+RA+ QIK
Sbjct: 53 LKTELDEQNSAYLRLAADFENFRRRTLKEREELELQSKRTTITELLPVIDNFDRARAQIK 112
Query: 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
Q E E I+ SYQ +YKQLV+ L +GV P+ G PFDP
Sbjct: 113 PQGEEAEAIHKSYQGLYKQLVDCLKRIGVSPMRAEGQPFDP 153
>sp|B7KLH9|GRPE_CYAP7 Protein GrpE OS=Cyanothece sp. (strain PCC 7424) GN=grpE PE=3 SV=1
Length = 286
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 79/122 (64%), Gaps = 4/122 (3%)
Query: 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGE 208
E+LL++ + K LE + ++++ A + R + ++A+FDNFRKRT +E+ L A+ +
Sbjct: 103 ESLLQTNQSLKDQLEEQ----NQQIDAAKRRYIGLAAEFDNFRKRTLREKEELEKQAKRK 158
Query: 209 VMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFD 268
+ LL V+DNFERA+ QIK EGE +I+ SYQ +YK LV+ L LGV + G PFD
Sbjct: 159 TLSELLTVVDNFERARLQIKPSNEGEGEIHKSYQGVYKNLVDSLKRLGVSAMRAEGEPFD 218
Query: 269 PL 270
P+
Sbjct: 219 PM 220
>sp|Q8YUA7|GRPE_NOSS1 Protein GrpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=grpE
PE=3 SV=1
Length = 248
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 71/109 (65%)
Query: 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220
+L +++ +L +L + +RI+ADF+N+RKRT+KE+ L + + LL ++DNF
Sbjct: 79 ELTQQISSLKTQLDERSTQYMRIAADFENYRKRTQKEKEELDLQVKRNTILELLPIVDNF 138
Query: 221 ERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
ERA++ +K QTE E I+ SYQ +YKQLV+ L LGV P+ G FDP
Sbjct: 139 ERARSHLKPQTESEMTIHKSYQGVYKQLVDSLKRLGVSPMRPEGQEFDP 187
>sp|Q3MG83|GRPE_ANAVT Protein GrpE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=grpE PE=3 SV=1
Length = 248
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 71/109 (65%)
Query: 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220
+L +++ +L +L + +RI+ADF+N+RKRT+KE+ L + + LL ++DNF
Sbjct: 79 ELTQQINSLKTQLDERSTQYMRIAADFENYRKRTQKEKEELDLQVKRNTILELLPIVDNF 138
Query: 221 ERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
ERA++ +K QTE E I+ SYQ +YKQLV+ L LGV P+ G FDP
Sbjct: 139 ERARSHLKPQTESEMTIHKSYQGVYKQLVDSLKRLGVSPMRPEGQEFDP 187
>sp|A2C5L7|GRPE_PROM3 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9303) GN=grpE
PE=3 SV=1
Length = 237
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKE----RLSLVTNAQGEVMERLLQVL 217
LE++ +L EE R++ +RI+ADFDNFRKR ++ RL L+ E+ L V+
Sbjct: 53 LEQEHSSLREEHETLRSQYMRIAADFDNFRKRQSRDQDDLRLQLICTTLSEI----LPVV 108
Query: 218 DNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVK 272
DNFERA+ Q++ Q E + ++ SYQ +YKQLVE+L LGV + VG FDP +
Sbjct: 109 DNFERARQQLEPQGEEAQALHRSYQGLYKQLVEVLKQLGVASMRVVGQAFDPTLH 163
>sp|Q7NDP1|GRPE_GLOVI Protein GrpE OS=Gloeobacter violaceus (strain PCC 7421) GN=grpE
PE=3 SV=1
Length = 196
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 71/112 (63%), Gaps = 7/112 (6%)
Query: 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217
E DL++K+ + ++ + R+ ADFDNFRKRT++E+ L ++++ +L V
Sbjct: 44 ENSDLQKKLADYEQKYT-------RLMADFDNFRKRTQREKDELAYFVSAKLLKDILPVF 96
Query: 218 DNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
DNF+RA+ + E EEK++NSYQ +Y+Q + +L +GV +E +G PFDP
Sbjct: 97 DNFDRARAFAQPDNEREEKLHNSYQQVYRQFLSVLEKMGVTAMEAIGQPFDP 148
>sp|Q114R5|GRPE_TRIEI Protein GrpE OS=Trichodesmium erythraeum (strain IMS101) GN=grpE
PE=3 SV=1
Length = 242
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 64/98 (65%)
Query: 172 ELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT 231
+L + ++ R+ ADFDNFRKRT+KE+ L T + + LL V+DNFERA++ IK
Sbjct: 86 QLEEKESQYKRLGADFDNFRKRTQKEKEDLDTQVKCSTIMELLPVIDNFERARSHIKPAN 145
Query: 232 EGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+GE I+ SYQS+YKQ+V+ L LGV + G FDP
Sbjct: 146 DGEMAIHKSYQSVYKQMVDSLKRLGVSVMRPEGQEFDP 183
>sp|Q7VEJ7|GRPE_PROMA Protein GrpE OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=grpE PE=3 SV=1
Length = 242
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDN 219
+D E ++ L +E R++ +RI+ADFDNFRKR +++ L + +L V+DN
Sbjct: 57 LDNEARLEQLEKEHETLRSQYVRIAADFDNFRKRQSRDQDDLKLQLTCNTLSEILPVVDN 116
Query: 220 FERAKTQIKVQTEGEEK--INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGL 277
FERA+ QI EGEE I+ +YQ++YKQLV++L LGV P+ VG FDP + +
Sbjct: 117 FERARQQIN--PEGEEALTIHRNYQNLYKQLVDVLKKLGVAPMRVVGQSFDPTLHEALLR 174
Query: 278 KISRVLDEFSQILNQVCSGF 297
+ S ++ E IL ++ G+
Sbjct: 175 EPSELMVE-DMILEELVRGY 193
>sp|A9B9L4|GRPE_PROM4 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9211) GN=grpE
PE=3 SV=1
Length = 247
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%)
Query: 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDN 219
+D E ++ L E ++ +RI+ADFDNFRKR +++ L Q + +L V+DN
Sbjct: 63 LDNEARLEQLEREHETLNSQYMRIAADFDNFRKRQSRDQDDLRLQLQCNTLSSILPVVDN 122
Query: 220 FERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
F+RA+ Q+ + E + ++ SYQ +YKQLV++L LGV P+ VG FDP
Sbjct: 123 FDRARQQLNPEGEEAQALHKSYQGLYKQLVDVLKQLGVAPMRVVGQTFDP 172
>sp|Q7V9C9|GRPE_PROMM Protein GrpE OS=Prochlorococcus marinus (strain MIT 9313) GN=grpE
PE=3 SV=1
Length = 237
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Query: 135 EALAS--NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192
E++AS +D+ +++ A L E LE++ +L EE R++ +RI+ADFDNFRK
Sbjct: 24 ESVASINSDEGQSSAQSAPLADNEARLQQLEQEHSSLREEHETLRSQYMRIAADFDNFRK 83
Query: 193 RTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEIL 252
R +++ L + +L V+DNFERA+ Q++ Q E + ++ SYQ +YKQLV++L
Sbjct: 84 RQSRDQDDLRFQLICTTLSEILPVVDNFERARQQLEPQGEEAQALHRSYQGLYKQLVDVL 143
Query: 253 GSLGVVPVETVGNPFDPLVK 272
+GV + VG FDP +
Sbjct: 144 KQMGVASMRVVGQVFDPTLH 163
>sp|Q2JVR0|GRPE_SYNJA Protein GrpE OS=Synechococcus sp. (strain JA-3-3Ab) GN=grpE PE=3
SV=1
Length = 237
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 76/116 (65%), Gaps = 7/116 (6%)
Query: 161 DLERKVVNLSEELSAERARI-------LRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213
DL + L +EL R ++ +R+ ADF+N+R+RT++E+ + + + +
Sbjct: 47 DLSETLKQLQQELEITRQQLKEKEESYIRLYADFENYRRRTQREKEEFSQKERQKFVLEI 106
Query: 214 LQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
L V+D+FERA+ Q+K++T+ E +++NSYQS+Y+ LVE L +GV +++VG PFDP
Sbjct: 107 LPVVDSFERAQQQLKLETDREREVHNSYQSVYRLLVECLKKMGVSRMKSVGQPFDP 162
>sp|Q2JH51|GRPE_SYNJB Protein GrpE OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=grpE
PE=3 SV=1
Length = 237
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 75/108 (69%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
L+ ++ + ++L + LR+ ADF+N+R+RT++E+ + + + +L V+D+FE
Sbjct: 55 LQHELEVVRQQLKEKEDAYLRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFE 114
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA+ Q+K++T+ E +++NSYQS+Y+ LVE L +GV +++VG PFDP
Sbjct: 115 RAQQQLKLETDRERELHNSYQSVYRLLVECLKKMGVSRMKSVGQPFDP 162
>sp|Q3B0Y4|GRPE_SYNS9 Protein GrpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1
Length = 224
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
LE+++ +L +E A +++ +RI+ADFDNFRKR +++ L + +L V+DNFE
Sbjct: 54 LEQELNSLKQEHEAVQSQYMRIAADFDNFRKRQARDQDDLRQQLVCSTLTEILPVVDNFE 113
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA+ Q+ + E + ++ SYQ +YKQLV++L GV +E VG FDP
Sbjct: 114 RARQQLNPEGEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQEFDP 161
>sp|A2BZB9|GRPE_PROM1 Protein GrpE OS=Prochlorococcus marinus (strain NATL1A) GN=grpE
PE=3 SV=1
Length = 259
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%)
Query: 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220
D E ++ L +E ++ +RI+ADFDNFRKR +++ L + +L ++DNF
Sbjct: 75 DTEARLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNF 134
Query: 221 ERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
ERA+ Q+ + E + ++ SYQ +YKQLVE+L +LGV P+ V FDP
Sbjct: 135 ERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVVDQAFDP 183
>sp|Q46I46|GRPE_PROMT Protein GrpE OS=Prochlorococcus marinus (strain NATL2A) GN=grpE
PE=3 SV=1
Length = 259
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%)
Query: 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220
D E ++ L +E ++ +RI+ADFDNFRKR +++ L + +L ++DNF
Sbjct: 75 DTEARLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNF 134
Query: 221 ERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
ERA+ Q+ + E + ++ SYQ +YKQLVE+L +LGV P+ V FDP
Sbjct: 135 ERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVVDQAFDP 183
>sp|A3PA63|GRPE_PROM0 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) GN=grpE
PE=3 SV=1
Length = 239
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
L +E + + +RISADFDNFRKR +++ L + + +L ++DNFERA+ Q+K
Sbjct: 66 LEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQLVSKTLTAILPIVDNFERARQQLK 125
Query: 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
++E + ++ SYQ +YKQLVE+L GV P+ VG FDP
Sbjct: 126 PESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDP 166
>sp|A2BNE2|GRPE_PROMS Protein GrpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE
PE=3 SV=1
Length = 239
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 17/182 (9%)
Query: 88 IEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAE 147
IE SD E+ SD D+ A ++ S A+E T L S K T+
Sbjct: 2 IENQSDNIDNKENDLSDQDN---ALENVSSAQELTTE--NNELSSQK--------TEEIN 48
Query: 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207
E L S + LE+ L +E + + +RISADFDNFRKR +++ L
Sbjct: 49 TEELKNSISNNDARLEQ----LEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQLVS 104
Query: 208 EVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPF 267
+ + +L ++DNFERA+ Q+K ++E + ++ SYQ +YKQLVE+L GV P+ VG F
Sbjct: 105 KTLTAILPIVDNFERARQQLKPESEEAQSLHRSYQGLYKQLVEVLKQQGVSPMRVVGQQF 164
Query: 268 DP 269
DP
Sbjct: 165 DP 166
>sp|Q31DG8|GRPE_PROM9 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9312) GN=grpE
PE=3 SV=1
Length = 239
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
L +E + + +RISADFDNFRKR +++ L + + +L ++DNFERA+ Q+K
Sbjct: 66 LEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKVQLVSKTLTAILPIVDNFERARQQLK 125
Query: 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
++E + ++ SYQ +YKQLVE+L GV P+ VG FDP
Sbjct: 126 PESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDP 166
>sp|Q7UA77|GRPE_SYNPX Protein GrpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1
Length = 218
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
LE ++ L +E +++ +RI+ADFDNFRKR +++ + + +L V+DNFE
Sbjct: 49 LEHELQTLKQEHETLQSQYMRIAADFDNFRKRQSRDQEDIRQQLVCSTLSEILPVVDNFE 108
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA+ Q+ ++E + ++ SYQ +YKQLV++L GV +E VG FDP
Sbjct: 109 RARQQLNPESEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQLFDP 156
>sp|A8G203|GRPE_PROM2 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE
PE=3 SV=1
Length = 239
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Query: 114 DTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEAL-LKSFEDEKIDLERKVVNLSEE 172
D S+ + AP E + S + + ND+ + + EA+ + ++ + + ++ L +E
Sbjct: 15 DVSNQDNAP-----EDISSEQNSTNENDELTSQKKEAINTEELKNTISNNDARLKQLEKE 69
Query: 173 LSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTE 232
+ + +RISADFDNFRKR +++ L + + +L ++DNFERA+ Q++ ++E
Sbjct: 70 HETLKNQYVRISADFDNFRKRQSRDQDDLKIQIVSKTLTAILPIVDNFERARQQLQPESE 129
Query: 233 GEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+ ++ SYQ +YKQLVE+L GV P+ VG FDP
Sbjct: 130 EAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDP 166
>sp|Q3ANN0|GRPE_SYNSC Protein GrpE OS=Synechococcus sp. (strain CC9605) GN=grpE PE=3 SV=1
Length = 225
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
LE+++ L +E ++ +RI+ADFDNFRKR +++ + + +L V+DNFE
Sbjct: 50 LEQELSALKQEHDTLNSQYMRIAADFDNFRKRQSRDQDDMRKQLVCSTLTEILPVVDNFE 109
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA+ Q+ + E + ++ SYQ +YKQLVE+L GV ++ VG FDP
Sbjct: 110 RARQQLNPEGEEAQALHRSYQGLYKQLVEVLKQQGVARMDVVGQEFDP 157
>sp|A2BTV4|GRPE_PROM5 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9515) GN=grpE
PE=3 SV=1
Length = 239
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 65/101 (64%)
Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
L +E +++ +RI+ADFDNFRKR +++ L + + +L ++DNFERA+ Q+K
Sbjct: 66 LEKEHETLKSQYVRIAADFDNFRKRQSRDQDDLKIQLVSKALTAILPIVDNFERARQQLK 125
Query: 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+ + + ++ SYQ +YKQLVE+L GV P+ VG FDP
Sbjct: 126 PEGDEAQTLHRSYQGLYKQLVEVLKQQGVAPMRVVGQQFDP 166
>sp|Q7V3Q4|GRPE_PROMP Protein GrpE OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=grpE PE=3 SV=1
Length = 239
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 88 IEESSDGAVGIEDGTS-----DDDSS---GAASDDTSDAEEAPTSFIMETLQSYKEALAS 139
IE+ SD +ED S ++DSS S+D E + E L K + +
Sbjct: 2 IEKQSDNVENLEDNVSQEVNKNEDSSVIENQTSEDKQTLEVDDENIYAEDL---KNTITN 58
Query: 140 NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199
ND A +E L K E +++ +RI+ADFDNFRKR +++
Sbjct: 59 ND----ARLEQLEKEHE------------------TLKSQYVRIAADFDNFRKRQSRDQD 96
Query: 200 SLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVP 259
L + + +L ++DNFERA+ Q+K ++E + ++ SYQ +YKQLVE+L GV P
Sbjct: 97 DLKVQLVSKALTAILPIVDNFERARQQLKPESEEAQTLHRSYQGLYKQLVEVLKQQGVSP 156
Query: 260 VETVGNPFDP 269
+ V FDP
Sbjct: 157 MRVVAQQFDP 166
>sp|A9KKU1|GRPE_CLOPH Protein GrpE OS=Clostridium phytofermentans (strain ATCC 700394 /
DSM 18823 / ISDg) GN=grpE PE=3 SV=1
Length = 224
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 179 RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238
R++R A+F+NFRKRTEKE+ + +++ER+L V+DNFER + V+ E +
Sbjct: 92 RLMRNMAEFENFRKRTEKEKTQMFEVGAKDIIERILPVIDNFERGLAAVSVE-EKDSAFV 150
Query: 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+ IYKQLV L + GV +E G FDP
Sbjct: 151 QGIEKIYKQLVTTLEAAGVKQIEAAGKEFDP 181
>sp|Q3AF09|GRPE_CARHZ Protein GrpE OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=grpE PE=3 SV=1
Length = 194
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQV 216
DE + E + L +E + + + LR+ ADFDN+RKRT++E+ L+ E +++LL V
Sbjct: 40 DEAKNWEEEYNKLLDEHNRLKNQYLRLYADFDNYRKRTQREKEELLKYEGMEFLKKLLPV 99
Query: 217 LDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVG 276
LDNFERA +K + +K+ + ++QL+EIL V +E G PF+P + +
Sbjct: 100 LDNFERA---LKEKDTDPQKVIEGVELTHRQLLEILNQHEVKAIEAQGQPFNPELHEALM 156
Query: 277 LKISRVLDEFSQILNQVCSGF 297
+++ L+E + ++ ++ G+
Sbjct: 157 VEVREDLEE-NTVIEELVKGY 176
>sp|B7GKC7|GRPE_ANOFW Protein GrpE OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=grpE PE=3 SV=1
Length = 203
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 17/119 (14%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRT-------EKERL-SLVTNAQGEVMERLLQV 216
K+ L +L+ R LR+ ADFDN+R+R EK R SLV++ LL +
Sbjct: 57 KIAQLEAKLAETENRFLRLHADFDNYRRRVRLDMEAAEKYRAQSLVSD--------LLPI 108
Query: 217 LDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRV 275
LDNFERA Q++V+ E + + + +Y+ L+E L GV +E+VG PFDP V V
Sbjct: 109 LDNFERA-LQVQVEDEKAKLLLQGMEMVYRSLIEALKKEGVEAIESVGKPFDPHVHQAV 166
>sp|Q5KWZ6|GRPE_GEOKA Protein GrpE OS=Geobacillus kaustophilus (strain HTA426) GN=grpE
PE=1 SV=1
Length = 213
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
++ L +LS R LR+ ADF+NFR+RT +E + + LL VLDNFERA
Sbjct: 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA- 125
Query: 225 TQIKVQTEGEEK--INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRV 275
+K++T+ E+ I + +Y+ LV+ L GV +E VG PFDP + V
Sbjct: 126 --LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAV 176
>sp|Q9KWS8|GRPE_BACTR Protein GrpE OS=Bacillus thermoglucosidasius GN=grpE PE=3 SV=1
Length = 224
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 40/201 (19%)
Query: 73 ETETTETQEEIQEPQIEESS----DGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIME 128
E+ E QEE++E + +E + V E+G D A D+ D E+A
Sbjct: 17 ESPNAERQEELKENEHQEKNAPEEQEKVREENGRQD-----AQKDEIGDPEKAKE----- 66
Query: 129 TLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188
+ +E A+N K AE+EA +K E+ R LR+ ADF+
Sbjct: 67 --EQNEELAAAN--AKIAELEAKIKEMEN---------------------RYLRLYADFE 101
Query: 189 NFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQL 248
NFR+RT +E + ++ LL VLDNFERA +IK + E + I + +Y+ +
Sbjct: 102 NFRRRTRREMEAAEKYRAQSLVSDLLPVLDNFERA-LKIKAEDEQAKSILQGMEMVYRSV 160
Query: 249 VEILGSLGVVPVETVGNPFDP 269
++ L GV +E VG PFDP
Sbjct: 161 LDALKKEGVEAIEAVGKPFDP 181
>sp|A4IR32|GRPE_GEOTN Protein GrpE OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=grpE PE=3 SV=1
Length = 220
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
+V L E+L+ R LR+ ADF+NFR+R +E + + LL VLDNFERA
Sbjct: 74 QVAELEEKLAEMEKRYLRLYADFENFRRRARQEMEAAEKYRAQSLASDLLPVLDNFERA- 132
Query: 225 TQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+K++TE E+ I + +Y+ L++ L GV +E VG PFDP
Sbjct: 133 --LKIETENEQAKSILQGVEMVYRSLLDALRKEGVEVIEAVGKPFDP 177
>sp|A8FFD3|GRPE_BACP2 Protein GrpE OS=Bacillus pumilus (strain SAFR-032) GN=grpE PE=3
SV=1
Length = 185
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQ 215
+DE+ + K+ L + L + +ILR+ ADF+N+++R E ++ V+ LL
Sbjct: 30 QDEQSAFQEKIDELQQLLDEKENKILRVQADFENYKRRARTEVETVQKYRSQHVVSDLLP 89
Query: 216 VLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
LDNFERA I E + + Q +Y+QLVE L + GV P+E VG FDP
Sbjct: 90 ALDNFERA-LGIDPDNEQAKSLLEGMQMVYRQLVEALKNEGVEPIEAVGKEFDP 142
>sp|Q9LCQ6|GRPE_BRECH Protein GrpE (Fragment) OS=Brevibacillus choshinensis GN=grpE PE=3
SV=1
Length = 179
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDN 219
++ E++ + + + R+LR AD +N R+R KE+ L A +V+E LL +LDN
Sbjct: 28 VNWEQEAAHWKAQAEEHQNRMLRTMADMENLRRRVRKEQEDLAKYASQKVVEELLPILDN 87
Query: 220 FERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRV 275
FERA K ++ E + +Y+Q+V++ G+V + G PFDP V V
Sbjct: 88 FERALAADK-ESMTVESLLTGVDMVYRQMVQVFDKEGLVAIAAKGQPFDPHVHQAV 142
>sp|A1ANV1|GRPE_PELPD Protein GrpE OS=Pelobacter propionicus (strain DSM 2379) GN=grpE
PE=3 SV=1
Length = 190
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 163 ERKVVNLSEELSAERA-------RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQ 215
E ++ L E+L+A+ A R +R AD +NFRKR+ +E+ L+ ++E +L
Sbjct: 33 EERISRLEEQLAAKEAECRENWDRFVRERADLENFRKRSNREKEELLNYGTKSLLEEILP 92
Query: 216 VLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
V+DN ERA + G + Q I+ L+ + GV P+ET G PFDP
Sbjct: 93 VVDNLERALSH--ANENGSTGLTEGVQMIHGLLLNAMKKFGVTPLETSGAPFDP 144
>sp|Q5WHG2|GRPE_BACSK Protein GrpE OS=Bacillus clausii (strain KSM-K16) GN=grpE PE=3 SV=1
Length = 192
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 172 ELSAERARILRISADFDNFRKRTEKERLSLVT-NAQGEVMERLLQVLDNFERAKTQIKVQ 230
EL+ + R+ R+ AD++NFR+RT++E+ + AQG +E+LL LDNFERA ++ +
Sbjct: 53 ELNELKDRLARVRADYENFRRRTKEEKEAQAKYRAQG-FIEKLLPALDNFERA-LLVEPK 110
Query: 231 TEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQIL 290
E +++ + +Y+Q+ E L GV P+ T G FDP + V +++S E +QI+
Sbjct: 111 HEEAKQLLQGMEMVYRQVEEALKQEGVEPIPTEGELFDPHLHQAV-MQVSEEGYEPNQIV 169
Query: 291 NQVCSGF 297
++ G+
Sbjct: 170 EELQKGY 176
>sp|B2RLI9|GRPE_PORG3 Protein GrpE OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM
20709 / JCM 12257) GN=grpE PE=3 SV=1
Length = 194
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 165 KVVNLSEELSAERARI----LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220
KV + EEL+A+ A + LR+ A++DN+RKRT KE+ L+ N +V+ LL V+D+F
Sbjct: 43 KVADPVEELTAQLAALNDTHLRLMAEYDNYRKRTLKEKSELIRNGGEKVLVDLLPVIDDF 102
Query: 221 ERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKIS 280
ERA + + +E I + IY + ++ L GV +ET PFD + V + +
Sbjct: 103 ERALSNLGDMSE-PAAIKGGVELIYSKFMDYLQKQGVKKIETADLPFDADLCDAVAMIPA 161
Query: 281 RVLDEFSQILNQVCSGF 297
++ ++++ V +G+
Sbjct: 162 PSAEQKGKVIDCVKTGY 178
>sp|Q8CXD2|GRPE_OCEIH Protein GrpE OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=grpE PE=3 SV=1
Length = 190
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
++ L +E R++R+ A+FDN+++RT KER + +++ LL +DNFERA
Sbjct: 45 EIAKLQQEKDETYNRLVRLQAEFDNYKRRTLKEREADRKYKSQDLITELLPAIDNFERA- 103
Query: 225 TQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
Q++V TE + I + +Y+QL E L S GV P++T G FDP
Sbjct: 104 LQVEV-TEENKSIIDGIMMVYRQLQEALTSQGVEPIKTEGEVFDP 147
>sp|Q8RB69|GRPE_THETN Protein GrpE OS=Thermoanaerobacter tengcongensis (strain DSM 15242
/ JCM 11007 / NBRC 100824 / MB4) GN=grpE PE=3 SV=1
Length = 204
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 182 RISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EKINNS 240
RI A+FDN+RKRTEKE+ +++ Q +V+ LL V+DNFERA + EG+ +
Sbjct: 78 RIKAEFDNYRKRTEKEKAEMISYGQEQVIIELLPVIDNFERA-----LANEGDYNSLREG 132
Query: 241 YQSIYKQLVEILGSLGVVPVETVGNPFDP 269
+ IY+Q ++L V +E G FDP
Sbjct: 133 LELIYRQFKKVLDKFEVREIEAEGQMFDP 161
>sp|Q59240|GRPE_GEOSE Protein GrpE OS=Geobacillus stearothermophilus GN=grpE PE=3 SV=1
Length = 221
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 179 RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE--K 236
R LR+ ADF+NFR+RT +E + ++ LL LDNFERA +K++TE E+
Sbjct: 89 RYLRLYADFENFRRRTRQEMEAAEKYRAQSLVSDLLPALDNFERA---LKIETENEQAKS 145
Query: 237 INNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
I + +Y+ +++ L GV +E VG PFDP
Sbjct: 146 ILQGMEMVYRSVLDALKKEGVEAIEAVGKPFDP 178
>sp|Q7MU00|GRPE_PORGI Protein GrpE OS=Porphyromonas gingivalis (strain ATCC BAA-308 /
W83) GN=grpE PE=3 SV=1
Length = 194
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 165 KVVNLSEELSAERARI----LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220
KV + E+L+A+ A + LR+ A++DN+RKRT KE+ L+ N +V+ LL V+D+F
Sbjct: 43 KVADPVEQLTAQLAALNDTHLRLMAEYDNYRKRTLKEKSELIRNGGEKVLVDLLPVIDDF 102
Query: 221 ERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKIS 280
ERA + + +E I + IY + ++ L GV +ET PFD + V + +
Sbjct: 103 ERALSNLGDMSE-PAAIKEGVELIYSKFMDYLQKQGVKKIETADLPFDADLCDAVAMIPA 161
Query: 281 RVLDEFSQILNQVCSGF 297
++ ++++ V +G+
Sbjct: 162 PSAEQKGKVIDCVKTGY 178
>sp|A6LBD8|GRPE_PARD8 Protein GrpE OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=grpE PE=3 SV=1
Length = 194
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 110 AASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNL 169
A+ ++ + EEA T+ E + EA S D + E+EAL K + + +N
Sbjct: 13 ASKNENVNNEEA-TNLQEEQSNAADEAAGS--DNVSGEVEALQKKYNE---------LND 60
Query: 170 SEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKV 229
S LR+ A+FDN+RKRT +E+ L+ ++ LL ++D+FERA ++
Sbjct: 61 SH---------LRLMAEFDNYRKRTMREKADLIKTGGEGALKNLLPIIDDFERALQNVRA 111
Query: 230 QTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFD 268
E E + I+ + + L GV P+E +G PFD
Sbjct: 112 -AEDVEAVKEGVDLIFGKFMGYLSQQGVKPIEAIGKPFD 149
>sp|C1F924|GRPE_ACIC5 Protein GrpE OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM
11244 / JCM 7670) GN=grpE PE=3 SV=1
Length = 205
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204
AAE +A + E E++ ER E A + R+ R+ A+FDN RKR KER
Sbjct: 37 AAEPQAQILQEEVERLRAERDAALADRE--AFQDRLARLQAEFDNARKREAKERSEFRDY 94
Query: 205 AQGEVMERLLQVLDNFERAKTQIKVQTEG-EEKINNSYQSIYKQLVEILGSLGVVPVETV 263
+ E L VLDNF Q+ + + G E++ + I KQ+ E L SL ++P+ETV
Sbjct: 95 SVASTAEAFLPVLDNF-----QLALASTGTAEQLRMGVELIVKQMDEALRSLSIIPIETV 149
Query: 264 GNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGF 297
G FDP V + + + R Q++ +V G+
Sbjct: 150 GAQFDPRVHEALEM-VEREDVPDHQVIEEVRRGY 182
>sp|A7GT09|GRPE_BACCN Protein GrpE OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=grpE PE=3 SV=1
Length = 198
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
L+ KV L +L+ R+LR+ ADF+N+++R + ++ + ++ +L LDNFE
Sbjct: 49 LQEKVDELQAKLTETEGRMLRLQADFENYKRRVQLDKQAAEKYRAQSLVSDILPALDNFE 108
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA Q++ E + + + +Y+QL+E L GV +E VG FDP
Sbjct: 109 RA-MQVEASDEQTKSLLQGMEMVYRQLLEALNKEGVEMIEAVGKQFDP 155
>sp|Q730M0|GRPE_BACC1 Protein GrpE OS=Bacillus cereus (strain ATCC 10987) GN=grpE PE=3
SV=1
Length = 192
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
L+ KV L +L+ R+LR+ ADF+N+++R + ++ + ++ +L LDNFE
Sbjct: 43 LQEKVDELQAKLTETEGRMLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFE 102
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA Q++ E + + + +Y+QL+E + GV +E VG FDP
Sbjct: 103 RA-MQVEANDEQMKSLLQGMEMVYRQLLEAMTKEGVEAIEAVGKQFDP 149
>sp|A9GHU4|GRPE_SORC5 Protein GrpE OS=Sorangium cellulosum (strain So ce56) GN=grpE PE=3
SV=1
Length = 194
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 163 ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFER 222
E K+ E + R ++LR +ADFDNFRKR+ +E + +++ LL V DN ER
Sbjct: 35 EDKLGEAQAEAARMREQLLRTAADFDNFRKRSRREVEEAQRRGREAILKDLLPVFDNLER 94
Query: 223 AKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLV 271
A + + + + + + + KQ V+ L +G+ + VG PFDP V
Sbjct: 95 AASHAESAPDA-KSVAEGVRIVTKQFVDTLDRMGIKRIAAVGKPFDPSV 142
>sp|Q9KD73|GRPE_BACHD Protein GrpE OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=grpE PE=3 SV=1
Length = 194
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223
+++ L ++ R+LRI AD+DNFR+R +E+ + ++E LL LDNFERA
Sbjct: 47 KRIAELEGQVDELNQRLLRIQADYDNFRRRQREEKEAAAKYRAQSLIEELLPALDNFERA 106
Query: 224 KTQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISR 281
+ V+ E EE + + +Y+Q+ E L G+ +ET G FDP + V +++
Sbjct: 107 ---LLVEPEQEETKTLLKGMEMVYRQVSEALKKEGLEVIETKGETFDPHLHQAV-MQVED 162
Query: 282 VLDEFSQILNQVCSGF 297
E ++I+ ++ G+
Sbjct: 163 AEFESNEIVEELQKGY 178
>sp|B7HPL4|GRPE_BACC7 Protein GrpE OS=Bacillus cereus (strain AH187) GN=grpE PE=3 SV=1
Length = 192
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221
L+ KV L +L+ R+LR+ ADF+N+++R + ++ + ++ +L LDNFE
Sbjct: 43 LQEKVDELQAKLTETEGRMLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFE 102
Query: 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
RA Q++ E + + + +Y+QL+E + GV +E VG FDP
Sbjct: 103 RA-MQVEATDEQMKSLLQGMEMVYRQLLEAMTKEGVEAIEAVGKQFDP 149
>sp|P30726|GRPE_CLOAB Protein GrpE OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=grpE PE=3
SV=1
Length = 200
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
L EL A + R+LR+SA+++N+R RT KE+ + T+A +V+ +L LDN ERA +
Sbjct: 62 LKNELDAAKDRLLRLSAEYENYRNRTAKEKEGIYTDACSDVINEMLPTLDNLERAAS--- 118
Query: 229 VQTEGE-EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
TEG E I + + KQ L LG+ + + G FDP
Sbjct: 119 --TEGSAEDIKKGVEMVVKQFKNSLSKLGIEEIPSEG-KFDP 157
>sp|Q64VI6|GRPE_BACFR Protein GrpE OS=Bacteroides fragilis (strain YCH46) GN=grpE PE=3
SV=1
Length = 195
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 172 ELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT 231
++ ++ + LR+SA+FDN+RKRT KE+ L+ N + ++ +L V+D+ ERA T ++ T
Sbjct: 55 QIEDQKDKYLRLSAEFDNYRKRTVKEKAELILNGGEKSIKSILPVIDDMERALTTMETAT 114
Query: 232 EGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILN 291
+ + + IY + + IL GV +ET P D + + + ++ +IL+
Sbjct: 115 DV-NAVKEGVELIYNKFLSILSQDGVKVIETKDQPLDTDYHEAIAVIPAPTEEQKGKILD 173
Query: 292 QVCSGF 297
V +G+
Sbjct: 174 CVQTGY 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,392,679
Number of Sequences: 539616
Number of extensions: 4192155
Number of successful extensions: 22388
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 773
Number of HSP's that attempted gapping in prelim test: 20518
Number of HSP's gapped (non-prelim): 2304
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)