Query 021637
Match_columns 310
No_of_seqs 207 out of 1151
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14148 heat shock protein Gr 100.0 3.5E-44 7.6E-49 322.9 19.3 151 155-309 38-188 (195)
2 PRK14151 heat shock protein Gr 100.0 2.2E-44 4.8E-49 319.8 17.5 148 159-309 22-169 (176)
3 PRK14143 heat shock protein Gr 100.0 6.4E-44 1.4E-48 329.7 18.4 149 158-309 68-216 (238)
4 PRK14147 heat shock protein Gr 100.0 7.1E-44 1.5E-48 315.6 17.5 147 158-310 19-165 (172)
5 PRK14162 heat shock protein Gr 100.0 9.4E-44 2E-48 319.9 18.1 153 154-310 36-189 (194)
6 PRK14153 heat shock protein Gr 100.0 1.3E-43 2.8E-48 318.9 18.4 150 157-310 33-182 (194)
7 PRK14155 heat shock protein Gr 100.0 1E-43 2.2E-48 322.7 17.7 150 158-310 14-166 (208)
8 PRK14145 heat shock protein Gr 100.0 2.1E-43 4.6E-48 317.8 19.5 152 152-310 40-191 (196)
9 PRK14161 heat shock protein Gr 100.0 1.7E-43 3.7E-48 314.6 18.6 152 156-310 18-171 (178)
10 PRK14139 heat shock protein Gr 100.0 1.5E-43 3.2E-48 316.6 17.8 146 157-309 32-177 (185)
11 PRK14150 heat shock protein Gr 100.0 2.3E-43 5E-48 317.3 18.4 148 156-309 40-187 (193)
12 PRK14140 heat shock protein Gr 100.0 3.6E-43 7.9E-48 315.4 19.1 151 156-310 36-186 (191)
13 PRK14154 heat shock protein Gr 100.0 3E-43 6.5E-48 319.3 18.2 148 159-309 54-202 (208)
14 PRK14141 heat shock protein Gr 100.0 2.8E-43 6.1E-48 319.9 17.7 147 160-309 34-185 (209)
15 COG0576 GrpE Molecular chapero 100.0 3E-43 6.6E-48 316.5 17.7 147 161-310 40-186 (193)
16 PRK14158 heat shock protein Gr 100.0 4.4E-43 9.6E-48 315.5 18.0 150 156-310 39-189 (194)
17 PRK14160 heat shock protein Gr 100.0 7.4E-43 1.6E-47 317.4 19.5 152 151-310 55-206 (211)
18 PRK14146 heat shock protein Gr 100.0 9.8E-43 2.1E-47 317.8 19.1 148 159-310 56-207 (215)
19 PRK14144 heat shock protein Gr 100.0 8.6E-43 1.9E-47 314.4 18.5 147 159-310 47-193 (199)
20 PRK14163 heat shock protein Gr 100.0 8.6E-43 1.9E-47 317.3 17.8 139 160-309 43-181 (214)
21 PRK10325 heat shock protein Gr 100.0 1.3E-42 2.7E-47 313.4 17.5 143 161-309 46-188 (197)
22 PRK14159 heat shock protein Gr 100.0 2E-42 4.4E-47 307.2 17.1 142 164-310 30-171 (176)
23 PRK14149 heat shock protein Gr 100.0 1E-41 2.2E-46 306.0 17.7 142 164-310 43-184 (191)
24 PRK14157 heat shock protein Gr 100.0 2.6E-41 5.6E-46 309.7 17.3 138 161-309 81-218 (227)
25 PRK14156 heat shock protein Gr 100.0 2.4E-40 5.3E-45 294.1 18.7 141 161-310 31-172 (177)
26 PRK14142 heat shock protein Gr 100.0 2.4E-39 5.1E-44 295.7 16.6 133 168-309 44-176 (223)
27 PRK14164 heat shock protein Gr 100.0 9.4E-39 2E-43 291.8 16.3 134 164-310 77-211 (218)
28 KOG3003 Molecular chaperone of 100.0 2.9E-37 6.2E-42 282.2 17.8 148 158-309 72-225 (236)
29 cd00446 GrpE GrpE is the adeni 100.0 5.7E-37 1.2E-41 260.9 15.4 133 174-310 2-134 (137)
30 PF01025 GrpE: GrpE; InterPro 100.0 7.6E-37 1.7E-41 265.1 11.1 151 155-309 9-159 (165)
31 KOG3003 Molecular chaperone of 95.0 0.45 9.8E-06 44.8 12.0 94 141-236 69-162 (236)
32 PF06156 DUF972: Protein of un 91.7 0.55 1.2E-05 39.1 6.2 74 150-223 8-81 (107)
33 PTZ00464 SNF-7-like protein; P 91.6 4.1 8.9E-05 37.8 12.4 16 162-177 30-45 (211)
34 KOG1962 B-cell receptor-associ 91.5 0.62 1.3E-05 43.4 6.9 53 144-196 159-211 (216)
35 PF04728 LPP: Lipoprotein leuc 91.3 1.6 3.5E-05 32.5 7.6 52 143-194 3-54 (56)
36 PF13805 Pil1: Eisosome compon 91.2 8.8 0.00019 37.0 14.4 105 145-249 140-253 (271)
37 COG1579 Zn-ribbon protein, pos 91.1 6 0.00013 37.5 13.1 77 146-222 27-103 (239)
38 PRK11637 AmiB activator; Provi 89.2 6.1 0.00013 39.6 12.3 59 145-203 77-135 (428)
39 cd07627 BAR_Vps5p The Bin/Amph 88.9 7.3 0.00016 35.6 11.6 69 146-214 118-193 (216)
40 COG3883 Uncharacterized protei 88.8 21 0.00045 34.4 14.9 62 144-205 46-107 (265)
41 PF06005 DUF904: Protein of un 88.4 7.4 0.00016 30.3 9.6 46 152-197 20-65 (72)
42 PF03938 OmpH: Outer membrane 88.3 6 0.00013 33.7 10.1 50 174-223 79-128 (158)
43 PF05377 FlaC_arch: Flagella a 88.3 2.4 5.2E-05 31.6 6.5 45 144-188 1-45 (55)
44 COG1579 Zn-ribbon protein, pos 87.3 18 0.00038 34.4 13.3 52 152-203 105-156 (239)
45 COG3883 Uncharacterized protei 85.5 6.4 0.00014 37.8 9.4 52 143-194 38-89 (265)
46 PF06810 Phage_GP20: Phage min 84.8 27 0.00058 30.7 13.0 13 176-188 56-68 (155)
47 PRK14163 heat shock protein Gr 84.7 24 0.00051 33.0 12.5 52 145-199 42-93 (214)
48 KOG0977 Nuclear envelope prote 84.3 16 0.00036 38.4 12.5 95 126-222 122-218 (546)
49 TIGR02894 DNA_bind_RsfA transc 84.2 13 0.00029 33.2 10.2 72 123-199 82-153 (161)
50 KOG1853 LIS1-interacting prote 84.1 33 0.00072 33.2 13.4 83 144-226 46-130 (333)
51 PRK13169 DNA replication intia 83.4 7.1 0.00015 32.8 7.8 48 150-197 8-55 (110)
52 PF04111 APG6: Autophagy prote 83.2 45 0.00098 32.5 14.4 32 234-265 168-203 (314)
53 COG4467 Regulator of replicati 83.0 2.9 6.3E-05 35.2 5.2 74 151-224 9-83 (114)
54 PF04012 PspA_IM30: PspA/IM30 82.0 10 0.00023 34.3 9.0 60 135-194 76-135 (221)
55 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.0 27 0.00058 29.6 11.0 56 149-204 58-113 (132)
56 PRK10884 SH3 domain-containing 81.9 13 0.00029 34.2 9.7 7 94-100 66-72 (206)
57 PF14357 DUF4404: Domain of un 81.8 2.7 5.9E-05 33.5 4.5 36 215-257 50-85 (85)
58 PRK14143 heat shock protein Gr 81.6 39 0.00085 31.9 12.9 63 144-209 68-130 (238)
59 PF10481 CENP-F_N: Cenp-F N-te 81.4 16 0.00035 35.5 10.2 81 132-228 7-87 (307)
60 PF12128 DUF3584: Protein of u 81.3 61 0.0013 37.1 16.5 83 125-208 604-686 (1201)
61 cd07664 BAR_SNX2 The Bin/Amphi 81.3 25 0.00054 33.0 11.4 50 164-213 159-208 (234)
62 COG2433 Uncharacterized conser 79.8 78 0.0017 34.1 15.4 69 157-225 422-491 (652)
63 KOG0250 DNA repair protein RAD 79.7 48 0.001 37.6 14.5 82 145-226 396-490 (1074)
64 PF11932 DUF3450: Protein of u 79.5 41 0.00088 31.3 12.3 44 149-192 41-84 (251)
65 PF09403 FadA: Adhesion protei 79.5 16 0.00035 31.4 8.8 24 176-199 87-110 (126)
66 PF12329 TMF_DNA_bd: TATA elem 79.2 15 0.00032 28.5 7.7 39 157-195 33-71 (74)
67 PF05529 Bap31: B-cell recepto 78.9 7.1 0.00015 34.8 6.8 34 164-197 154-187 (192)
68 cd07623 BAR_SNX1_2 The Bin/Amp 78.8 36 0.00079 31.3 11.6 50 164-213 149-198 (224)
69 PRK11637 AmiB activator; Provi 78.8 17 0.00037 36.4 10.2 40 147-186 86-125 (428)
70 PF04111 APG6: Autophagy prote 78.1 38 0.00082 33.1 12.0 49 142-190 42-90 (314)
71 PF04156 IncA: IncA protein; 77.9 48 0.001 29.1 13.7 40 152-191 83-122 (191)
72 PRK15396 murein lipoprotein; P 77.8 11 0.00025 29.8 6.7 52 143-194 25-76 (78)
73 PRK13729 conjugal transfer pil 77.5 6.3 0.00014 40.8 6.7 52 143-194 69-120 (475)
74 PF11559 ADIP: Afadin- and alp 77.0 24 0.00052 30.2 9.2 75 126-200 40-116 (151)
75 COG2433 Uncharacterized conser 76.9 35 0.00077 36.5 11.9 79 147-227 426-507 (652)
76 PLN02939 transferase, transfer 76.7 1.3E+02 0.0029 34.1 16.8 61 115-176 119-182 (977)
77 TIGR01069 mutS2 MutS2 family p 76.5 28 0.00061 38.1 11.6 8 287-294 640-647 (771)
78 PRK04863 mukB cell division pr 76.5 76 0.0017 37.5 15.6 69 133-201 973-1043(1486)
79 KOG0250 DNA repair protein RAD 76.5 82 0.0018 35.9 15.1 43 235-277 471-516 (1074)
80 smart00338 BRLZ basic region l 76.5 8.7 0.00019 28.5 5.6 37 144-180 27-63 (65)
81 PF09738 DUF2051: Double stran 76.4 45 0.00097 32.6 11.9 35 154-188 102-136 (302)
82 KOG0804 Cytoplasmic Zn-finger 76.3 1E+02 0.0022 32.1 14.6 69 180-252 380-448 (493)
83 PRK09039 hypothetical protein; 75.9 31 0.00066 34.1 10.8 16 240-255 238-253 (343)
84 COG4942 Membrane-bound metallo 75.5 95 0.0021 31.9 14.3 49 146-194 48-96 (420)
85 cd07596 BAR_SNX The Bin/Amphip 75.5 55 0.0012 28.5 13.4 46 164-209 145-190 (218)
86 TIGR03185 DNA_S_dndD DNA sulfu 75.3 62 0.0013 34.4 13.5 14 243-256 506-519 (650)
87 PF09325 Vps5: Vps5 C terminal 75.1 41 0.00088 30.2 10.7 55 164-218 163-217 (236)
88 PF07106 TBPIP: Tat binding pr 75.0 39 0.00085 29.5 10.3 65 159-223 74-138 (169)
89 PHA02562 46 endonuclease subun 74.6 97 0.0021 31.6 14.4 16 148-163 304-319 (562)
90 PF15290 Syntaphilin: Golgi-lo 74.4 72 0.0016 31.2 12.4 58 164-224 82-140 (305)
91 PF03357 Snf7: Snf7; InterPro 74.3 34 0.00073 29.1 9.5 30 147-176 5-34 (171)
92 PF06810 Phage_GP20: Phage min 74.2 35 0.00076 30.0 9.7 42 148-189 32-76 (155)
93 PF11559 ADIP: Afadin- and alp 74.1 36 0.00077 29.1 9.6 52 144-195 53-104 (151)
94 COG4238 Murein lipoprotein [Ce 73.8 22 0.00048 28.2 7.3 53 141-193 23-75 (78)
95 PF06120 Phage_HK97_TLTM: Tail 73.3 51 0.0011 32.3 11.3 39 155-193 72-110 (301)
96 KOG0933 Structural maintenance 73.2 57 0.0012 37.0 12.7 78 146-227 680-757 (1174)
97 COG1196 Smc Chromosome segrega 72.6 47 0.001 37.8 12.5 49 144-192 377-425 (1163)
98 PRK14150 heat shock protein Gr 72.5 31 0.00068 31.5 9.2 45 159-210 36-80 (193)
99 KOG4603 TBP-1 interacting prot 72.5 17 0.00038 33.1 7.4 51 146-196 89-141 (201)
100 TIGR03752 conj_TIGR03752 integ 72.4 33 0.00072 35.6 10.3 58 144-204 67-124 (472)
101 PRK02224 chromosome segregatio 72.3 84 0.0018 34.2 14.0 11 263-273 457-467 (880)
102 smart00787 Spc7 Spc7 kinetocho 72.3 1E+02 0.0022 30.2 14.3 48 149-196 150-197 (312)
103 KOG2856 Adaptor protein PACSIN 72.2 68 0.0015 32.7 12.0 133 157-296 177-326 (472)
104 PF06160 EzrA: Septation ring 72.0 45 0.00096 35.0 11.4 54 144-197 380-433 (560)
105 COG4026 Uncharacterized protei 71.8 28 0.00062 33.1 8.9 39 158-196 136-174 (290)
106 PF08317 Spc7: Spc7 kinetochor 71.6 33 0.00072 33.3 9.8 18 210-227 253-270 (325)
107 PF10211 Ax_dynein_light: Axon 71.6 79 0.0017 28.6 12.6 42 159-200 122-163 (189)
108 COG4942 Membrane-bound metallo 70.9 36 0.00077 34.9 10.0 41 149-189 58-98 (420)
109 TIGR03545 conserved hypothetic 70.6 1.3E+02 0.0029 31.8 14.5 68 141-208 189-263 (555)
110 PRK00409 recombination and DNA 70.6 49 0.0011 36.3 11.7 25 269-296 637-661 (782)
111 PF03962 Mnd1: Mnd1 family; I 70.5 74 0.0016 28.8 11.2 26 149-174 68-93 (188)
112 cd07622 BAR_SNX4 The Bin/Amphi 70.5 86 0.0019 28.6 13.3 61 159-219 135-195 (201)
113 PF13870 DUF4201: Domain of un 70.3 50 0.0011 29.1 9.8 68 149-216 83-150 (177)
114 PF06005 DUF904: Protein of un 70.2 49 0.0011 25.7 10.2 45 146-190 7-51 (72)
115 KOG0971 Microtubule-associated 69.1 1.3E+02 0.0027 34.2 14.1 52 172-224 266-317 (1243)
116 KOG2911 Uncharacterized conser 68.8 79 0.0017 32.6 11.9 44 157-200 240-291 (439)
117 COG4026 Uncharacterized protei 68.8 22 0.00047 33.9 7.4 44 143-186 135-178 (290)
118 PF05384 DegS: Sensor protein 68.6 87 0.0019 27.9 12.5 72 154-228 38-118 (159)
119 PRK09039 hypothetical protein; 68.2 80 0.0017 31.2 11.7 41 154-194 141-181 (343)
120 PRK09973 putative outer membra 67.9 26 0.00057 28.3 6.7 48 143-190 24-71 (85)
121 PF10146 zf-C4H2: Zinc finger- 67.8 1E+02 0.0022 29.1 11.7 67 159-226 34-103 (230)
122 PF14662 CCDC155: Coiled-coil 67.8 87 0.0019 28.9 10.9 46 152-197 83-128 (193)
123 PRK14161 heat shock protein Gr 67.6 76 0.0017 28.7 10.5 52 149-200 18-73 (178)
124 PTZ00446 vacuolar sorting prot 67.4 1E+02 0.0022 28.3 11.7 57 204-261 77-133 (191)
125 PF11932 DUF3450: Protein of u 66.8 1.1E+02 0.0024 28.4 14.0 49 143-191 42-90 (251)
126 PF13851 GAS: Growth-arrest sp 66.5 1E+02 0.0023 28.1 15.9 131 128-259 27-177 (201)
127 PF05008 V-SNARE: Vesicle tran 66.5 18 0.00039 27.4 5.5 51 144-194 26-77 (79)
128 cd07665 BAR_SNX1 The Bin/Amphi 66.3 96 0.0021 29.2 11.3 41 164-204 159-199 (234)
129 PF12718 Tropomyosin_1: Tropom 66.0 89 0.0019 27.1 13.5 41 144-184 22-62 (143)
130 PRK15422 septal ring assembly 65.9 53 0.0012 26.2 8.0 32 146-177 7-38 (79)
131 PF00170 bZIP_1: bZIP transcri 65.8 24 0.00051 26.1 5.8 30 145-174 28-57 (64)
132 PRK00409 recombination and DNA 65.6 84 0.0018 34.5 12.2 13 152-164 522-534 (782)
133 PF08172 CASP_C: CASP C termin 65.5 58 0.0013 30.9 9.8 60 121-184 75-134 (248)
134 PF05529 Bap31: B-cell recepto 65.4 33 0.00071 30.6 7.8 29 158-186 162-190 (192)
135 PHA02562 46 endonuclease subun 65.1 1.3E+02 0.0029 30.6 13.0 14 262-276 289-302 (562)
136 PF04977 DivIC: Septum formati 64.2 27 0.00058 26.1 6.0 8 165-172 32-39 (80)
137 PF01025 GrpE: GrpE; InterPro 64.1 48 0.001 28.5 8.3 41 149-192 17-57 (165)
138 PF08826 DMPK_coil: DMPK coile 63.8 51 0.0011 24.9 7.3 43 154-196 15-57 (61)
139 PRK03918 chromosome segregatio 63.6 2E+02 0.0044 31.1 14.7 25 156-180 625-649 (880)
140 PF08614 ATG16: Autophagy prot 63.4 76 0.0016 28.5 9.8 50 144-193 117-166 (194)
141 KOG1962 B-cell receptor-associ 63.2 73 0.0016 29.9 9.7 42 155-196 149-190 (216)
142 PF13094 CENP-Q: CENP-Q, a CEN 63.1 1E+02 0.0022 26.7 10.8 54 147-200 31-84 (160)
143 PF10168 Nup88: Nuclear pore c 63.1 2.1E+02 0.0045 31.4 14.5 52 146-197 561-619 (717)
144 cd00632 Prefoldin_beta Prefold 62.7 28 0.0006 28.2 6.2 31 148-178 68-98 (105)
145 PF07200 Mod_r: Modifier of ru 62.7 96 0.0021 26.3 13.5 39 159-197 50-88 (150)
146 KOG0976 Rho/Rac1-interacting s 62.5 2E+02 0.0043 32.4 13.9 100 125-225 82-186 (1265)
147 cd07679 F-BAR_PACSIN2 The F-BA 62.4 1.5E+02 0.0033 28.5 14.0 112 128-251 137-256 (258)
148 PRK14160 heat shock protein Gr 62.3 1.1E+02 0.0024 28.6 10.7 59 141-199 52-114 (211)
149 PRK00888 ftsB cell division pr 62.3 23 0.00051 29.2 5.7 25 166-190 36-60 (105)
150 PRK05759 F0F1 ATP synthase sub 62.0 51 0.0011 28.1 8.1 60 154-213 53-113 (156)
151 PRK04863 mukB cell division pr 61.4 2.4E+02 0.0051 33.6 15.4 30 163-192 368-397 (1486)
152 PRK10780 periplasmic chaperone 61.2 1.1E+02 0.0024 26.6 12.4 16 245-260 126-141 (165)
153 PF12777 MT: Microtubule-bindi 61.1 37 0.00081 33.2 7.9 39 151-189 222-260 (344)
154 PRK07352 F0F1 ATP synthase sub 61.0 48 0.001 29.1 7.9 24 187-210 102-125 (174)
155 PF08614 ATG16: Autophagy prot 61.0 74 0.0016 28.5 9.2 11 178-188 165-175 (194)
156 PF10211 Ax_dynein_light: Axon 61.0 1.3E+02 0.0028 27.2 10.9 40 151-190 121-160 (189)
157 PF11855 DUF3375: Protein of u 60.7 85 0.0018 32.3 10.7 104 116-220 117-233 (478)
158 PRK10361 DNA recombination pro 60.5 2.2E+02 0.0048 29.8 14.8 54 173-226 101-155 (475)
159 KOG0994 Extracellular matrix g 59.9 2.7E+02 0.0059 32.7 14.7 73 150-224 1647-1719(1758)
160 TIGR02977 phageshock_pspA phag 59.8 1.4E+02 0.0031 27.3 13.2 56 138-193 80-135 (219)
161 TIGR02302 aProt_lowcomp conser 59.8 2.2E+02 0.0047 31.9 14.1 80 145-224 498-607 (851)
162 PRK04778 septation ring format 59.8 63 0.0014 33.9 9.7 45 152-196 392-436 (569)
163 PRK04778 septation ring format 59.7 1.1E+02 0.0024 32.1 11.5 51 145-195 378-428 (569)
164 PRK14139 heat shock protein Gr 59.6 1.4E+02 0.003 27.2 12.5 52 145-199 34-85 (185)
165 PF09006 Surfac_D-trimer: Lung 59.5 25 0.00054 25.4 4.6 26 167-192 2-27 (46)
166 TIGR00606 rad50 rad50. This fa 59.5 2.1E+02 0.0045 33.2 14.5 56 146-201 884-939 (1311)
167 TIGR02894 DNA_bind_RsfA transc 59.4 52 0.0011 29.6 7.7 36 160-195 100-135 (161)
168 PRK13454 F0F1 ATP synthase sub 59.4 1.3E+02 0.0028 26.9 10.4 89 125-219 80-168 (181)
169 PF08826 DMPK_coil: DMPK coile 59.4 60 0.0013 24.6 7.0 43 149-191 17-59 (61)
170 TIGR00998 8a0101 efflux pump m 59.2 1.6E+02 0.0035 27.8 13.5 41 152-192 96-136 (334)
171 KOG0995 Centromere-associated 58.9 2.6E+02 0.0055 30.0 15.1 34 238-271 373-407 (581)
172 COG1842 PspA Phage shock prote 58.8 1E+02 0.0022 28.9 9.9 132 124-257 73-205 (225)
173 PRK04406 hypothetical protein; 58.7 85 0.0018 24.5 8.0 37 157-193 11-47 (75)
174 PRK10869 recombination and rep 58.6 1.1E+02 0.0023 32.2 11.2 35 165-199 342-376 (553)
175 PRK14158 heat shock protein Gr 58.2 1.4E+02 0.0031 27.3 10.6 52 144-198 41-92 (194)
176 KOG4196 bZIP transcription fac 58.1 39 0.00085 29.4 6.5 41 159-199 76-116 (135)
177 PRK14154 heat shock protein Gr 58.0 1.1E+02 0.0024 28.5 9.9 46 147-195 56-101 (208)
178 PF04977 DivIC: Septum formati 57.7 35 0.00076 25.4 5.6 28 149-176 23-50 (80)
179 PRK14148 heat shock protein Gr 57.7 1.4E+02 0.0031 27.4 10.5 53 145-200 42-94 (195)
180 PF00261 Tropomyosin: Tropomyo 57.2 1.6E+02 0.0035 27.2 17.1 111 144-256 121-235 (237)
181 PF04201 TPD52: Tumour protein 57.1 74 0.0016 28.6 8.3 36 145-180 31-66 (162)
182 COG3599 DivIVA Cell division i 56.4 91 0.002 29.1 9.1 59 149-207 36-99 (212)
183 PLN02372 violaxanthin de-epoxi 56.4 1.2E+02 0.0026 31.3 10.6 12 180-191 412-423 (455)
184 PRK10361 DNA recombination pro 56.3 2.6E+02 0.0056 29.3 15.5 56 152-207 69-124 (475)
185 COG3074 Uncharacterized protei 56.0 1E+02 0.0022 24.4 10.1 71 146-218 7-77 (79)
186 KOG0243 Kinesin-like protein [ 56.0 2.9E+02 0.0063 31.7 14.2 39 143-181 434-472 (1041)
187 PF10779 XhlA: Haemolysin XhlA 55.9 83 0.0018 23.9 7.4 39 158-196 7-45 (71)
188 KOG4196 bZIP transcription fac 55.8 34 0.00074 29.8 5.7 35 149-183 80-114 (135)
189 PF03904 DUF334: Domain of unk 55.7 1.9E+02 0.0041 27.5 12.1 59 211-272 120-179 (230)
190 PF05278 PEARLI-4: Arabidopsis 55.3 50 0.0011 31.9 7.4 42 155-196 191-232 (269)
191 PF03194 LUC7: LUC7 N_terminus 55.2 87 0.0019 29.7 9.0 44 205-254 191-234 (254)
192 PF10186 Atg14: UV radiation r 55.1 1.7E+02 0.0038 26.9 14.6 21 240-260 141-162 (302)
193 COG5200 LUC7 U1 snRNP componen 54.9 1.9E+02 0.0042 27.4 11.1 46 209-260 190-235 (258)
194 PRK14157 heat shock protein Gr 54.5 1.9E+02 0.0042 27.3 11.2 50 147-199 81-130 (227)
195 KOG0161 Myosin class II heavy 54.4 2.4E+02 0.0053 34.4 14.0 54 143-196 1512-1565(1930)
196 PRK14155 heat shock protein Gr 54.4 1.1E+02 0.0023 28.5 9.2 47 149-198 19-65 (208)
197 KOG1029 Endocytic adaptor prot 53.9 3E+02 0.0064 31.0 13.5 62 164-225 486-559 (1118)
198 PRK14151 heat shock protein Gr 53.8 1.4E+02 0.0031 26.9 9.7 50 147-199 24-73 (176)
199 TIGR00634 recN DNA repair prot 53.8 2.2E+02 0.0048 29.7 12.5 18 241-258 377-394 (563)
200 PRK13729 conjugal transfer pil 53.8 35 0.00076 35.5 6.5 22 152-173 71-92 (475)
201 cd07680 F-BAR_PACSIN1 The F-BA 53.7 2.1E+02 0.0045 27.4 13.1 52 156-207 167-218 (258)
202 PRK14147 heat shock protein Gr 53.7 1.3E+02 0.0028 27.0 9.4 46 151-199 26-71 (172)
203 PF08912 Rho_Binding: Rho Bind 53.7 1.1E+02 0.0023 24.0 9.3 59 151-210 4-62 (69)
204 COG3879 Uncharacterized protei 53.5 71 0.0015 30.6 8.0 21 245-265 141-161 (247)
205 COG1196 Smc Chromosome segrega 53.5 4E+02 0.0086 30.6 16.2 31 259-291 517-549 (1163)
206 KOG3647 Predicted coiled-coil 53.4 52 0.0011 32.2 7.1 46 151-196 113-158 (338)
207 PF00170 bZIP_1: bZIP transcri 53.4 62 0.0013 23.8 6.2 32 152-183 28-59 (64)
208 TIGR03752 conj_TIGR03752 integ 53.3 1.2E+02 0.0026 31.7 10.2 42 159-200 68-109 (472)
209 PF12325 TMF_TATA_bd: TATA ele 52.7 1.5E+02 0.0031 25.3 13.9 48 144-191 17-64 (120)
210 TIGR00606 rad50 rad50. This fa 52.0 4.1E+02 0.0088 30.9 15.2 40 144-183 823-862 (1311)
211 PF04859 DUF641: Plant protein 51.8 86 0.0019 27.2 7.7 45 145-189 82-126 (131)
212 PF01920 Prefoldin_2: Prefoldi 51.7 49 0.0011 26.0 5.8 26 151-176 70-95 (106)
213 PRK14473 F0F1 ATP synthase sub 51.6 99 0.0021 26.8 8.2 19 189-207 93-111 (164)
214 PF09755 DUF2046: Uncharacteri 51.5 2.5E+02 0.0054 27.8 11.6 8 263-270 205-212 (310)
215 PRK02119 hypothetical protein; 51.4 1.1E+02 0.0024 23.6 7.6 40 155-194 7-46 (73)
216 PF05667 DUF812: Protein of un 51.4 1.4E+02 0.0031 31.9 10.7 30 160-189 450-479 (594)
217 PF10205 KLRAQ: Predicted coil 51.3 98 0.0021 25.8 7.6 63 126-189 10-72 (102)
218 PRK01156 chromosome segregatio 51.3 3.7E+02 0.008 29.5 16.4 14 245-258 763-776 (895)
219 PF12761 End3: Actin cytoskele 50.6 70 0.0015 29.6 7.3 11 213-223 162-172 (195)
220 PRK10803 tol-pal system protei 50.4 68 0.0015 30.4 7.5 49 144-192 55-103 (263)
221 PRK14162 heat shock protein Gr 50.1 2.1E+02 0.0045 26.3 10.3 49 146-197 42-90 (194)
222 KOG2911 Uncharacterized conser 50.1 3.1E+02 0.0067 28.4 12.4 14 245-258 353-366 (439)
223 PF12325 TMF_TATA_bd: TATA ele 50.0 1.2E+02 0.0025 25.9 8.1 52 144-195 31-85 (120)
224 PRK14144 heat shock protein Gr 50.0 1.8E+02 0.004 26.9 9.9 50 148-200 50-99 (199)
225 PRK13460 F0F1 ATP synthase sub 49.9 93 0.002 27.3 7.9 25 186-210 98-122 (173)
226 PRK04325 hypothetical protein; 49.6 1.2E+02 0.0026 23.5 7.5 26 161-186 13-38 (74)
227 PF05377 FlaC_arch: Flagella a 49.6 64 0.0014 24.1 5.6 27 154-180 4-30 (55)
228 PF10883 DUF2681: Protein of u 49.4 75 0.0016 25.7 6.5 35 163-197 29-63 (87)
229 KOG4571 Activating transcripti 49.4 93 0.002 30.5 8.2 38 144-181 249-286 (294)
230 PF12777 MT: Microtubule-bindi 49.3 2.6E+02 0.0057 27.3 14.4 108 144-252 9-130 (344)
231 PF05667 DUF812: Protein of un 49.3 3.6E+02 0.0079 28.9 13.7 69 145-216 323-391 (594)
232 PF04102 SlyX: SlyX; InterPro 49.2 1E+02 0.0022 23.4 6.9 33 160-192 7-39 (69)
233 PF14817 HAUS5: HAUS augmin-li 48.9 54 0.0012 35.3 7.2 49 146-194 82-130 (632)
234 PRK00888 ftsB cell division pr 48.7 71 0.0015 26.3 6.4 35 144-178 28-62 (105)
235 PRK14145 heat shock protein Gr 48.7 2.2E+02 0.0048 26.2 10.3 54 144-200 46-99 (196)
236 PRK00736 hypothetical protein; 48.6 1.2E+02 0.0026 23.1 7.7 36 159-194 7-42 (68)
237 PF04012 PspA_IM30: PspA/IM30 48.1 2.1E+02 0.0046 25.8 14.9 12 245-256 148-159 (221)
238 PF00261 Tropomyosin: Tropomyo 47.6 97 0.0021 28.7 8.0 27 141-167 139-165 (237)
239 TIGR02338 gimC_beta prefoldin, 47.5 66 0.0014 26.3 6.1 34 161-194 71-104 (110)
240 TIGR02680 conserved hypothetic 47.4 5.3E+02 0.012 30.3 16.1 36 237-272 380-415 (1353)
241 cd07667 BAR_SNX30 The Bin/Amph 47.3 2.6E+02 0.0056 26.6 11.7 18 207-224 191-208 (240)
242 KOG0243 Kinesin-like protein [ 47.3 3.8E+02 0.0083 30.8 13.5 33 157-189 441-473 (1041)
243 PRK11546 zraP zinc resistance 47.0 62 0.0013 28.5 6.1 42 144-185 62-110 (143)
244 PF04880 NUDE_C: NUDE protein, 46.9 28 0.0006 31.3 4.0 46 126-180 2-47 (166)
245 PF04799 Fzo_mitofusin: fzo-li 46.7 88 0.0019 28.4 7.2 26 168-193 141-166 (171)
246 TIGR01843 type_I_hlyD type I s 46.7 2.8E+02 0.006 26.8 15.4 6 302-307 346-351 (423)
247 PF07888 CALCOCO1: Calcium bin 46.6 3.9E+02 0.0085 28.5 14.8 34 154-187 161-194 (546)
248 COG0497 RecN ATPase involved i 46.5 1.5E+02 0.0032 31.6 9.8 42 163-204 341-382 (557)
249 cd00632 Prefoldin_beta Prefold 46.3 68 0.0015 25.9 6.0 36 160-195 66-101 (105)
250 PLN02939 transferase, transfer 46.2 4.8E+02 0.01 29.9 14.1 20 235-254 375-394 (977)
251 PF12729 4HB_MCP_1: Four helix 46.1 1.6E+02 0.0035 23.9 12.2 91 135-226 67-161 (181)
252 TIGR03017 EpsF chain length de 46.1 2.5E+02 0.0053 27.9 11.0 44 160-203 257-307 (444)
253 PRK09343 prefoldin subunit bet 46.0 79 0.0017 26.6 6.4 27 165-191 79-105 (121)
254 PF04728 LPP: Lipoprotein leuc 45.9 1.3E+02 0.0027 22.6 7.8 35 152-186 5-39 (56)
255 KOG0977 Nuclear envelope prote 45.8 4E+02 0.0087 28.4 14.4 51 145-195 108-165 (546)
256 PRK14140 heat shock protein Gr 45.6 2.4E+02 0.0053 25.8 10.3 46 150-198 44-89 (191)
257 PHA01750 hypothetical protein 45.4 68 0.0015 25.0 5.3 29 150-178 42-70 (75)
258 COG1322 Predicted nuclease of 45.3 3.7E+02 0.0081 27.8 13.4 63 158-220 78-140 (448)
259 PF03670 UPF0184: Uncharacteri 45.3 1.1E+02 0.0023 24.7 6.7 45 154-198 30-74 (83)
260 PRK14153 heat shock protein Gr 45.2 1.5E+02 0.0032 27.3 8.6 49 147-198 37-85 (194)
261 KOG0804 Cytoplasmic Zn-finger 45.2 3.8E+02 0.0083 28.0 12.2 14 121-134 325-338 (493)
262 PF07200 Mod_r: Modifier of ru 45.2 1.9E+02 0.0041 24.5 12.2 55 145-199 29-83 (150)
263 PRK04406 hypothetical protein; 45.1 1.5E+02 0.0032 23.2 8.2 47 148-194 9-55 (75)
264 PRK13461 F0F1 ATP synthase sub 45.1 1.4E+02 0.0031 25.6 8.1 115 148-275 34-149 (159)
265 PRK01558 V-type ATP synthase s 45.0 2.4E+02 0.0051 25.5 10.9 38 180-217 50-87 (198)
266 PF07716 bZIP_2: Basic region 45.0 50 0.0011 23.6 4.4 25 145-169 27-51 (54)
267 PF12128 DUF3584: Protein of u 44.8 5.5E+02 0.012 29.7 15.8 20 239-258 750-769 (1201)
268 TIGR00998 8a0101 efflux pump m 44.7 98 0.0021 29.2 7.7 35 149-183 100-134 (334)
269 PF02388 FemAB: FemAB family; 44.6 1.3E+02 0.0028 30.2 8.8 35 235-270 329-365 (406)
270 KOG4673 Transcription factor T 44.6 4.5E+02 0.0098 29.2 13.0 67 144-213 410-479 (961)
271 PRK14141 heat shock protein Gr 44.3 2E+02 0.0044 26.7 9.4 48 148-198 36-83 (209)
272 PF05103 DivIVA: DivIVA protei 44.1 10 0.00022 31.2 0.8 23 184-206 73-95 (131)
273 PF05266 DUF724: Protein of un 44.0 2.2E+02 0.0047 26.0 9.4 20 123-142 68-87 (190)
274 PRK10780 periplasmic chaperone 43.9 2.2E+02 0.0047 24.8 11.4 10 215-224 120-129 (165)
275 PF07798 DUF1640: Protein of u 43.8 2.3E+02 0.005 25.0 15.6 61 146-206 47-108 (177)
276 KOG2264 Exostosin EXT1L [Signa 43.6 1E+02 0.0022 33.3 8.0 42 145-186 95-136 (907)
277 COG3937 Uncharacterized conser 43.4 79 0.0017 26.7 5.9 58 124-181 46-107 (108)
278 PF14584 DUF4446: Protein of u 43.2 1.2E+02 0.0027 26.6 7.5 53 126-181 25-77 (151)
279 PF05266 DUF724: Protein of un 43.1 1.5E+02 0.0033 27.0 8.3 18 160-177 127-144 (190)
280 KOG4010 Coiled-coil protein TP 42.9 83 0.0018 29.1 6.4 35 146-180 47-81 (208)
281 PF06160 EzrA: Septation ring 42.8 4.2E+02 0.0092 27.8 15.7 53 142-194 371-423 (560)
282 PRK10476 multidrug resistance 42.8 3.1E+02 0.0068 26.3 11.4 10 68-77 38-47 (346)
283 PRK14127 cell division protein 42.8 63 0.0014 27.2 5.3 29 148-176 28-56 (109)
284 PF10234 Cluap1: Clusterin-ass 42.5 1E+02 0.0022 29.8 7.3 39 156-194 175-213 (267)
285 PF07334 IFP_35_N: Interferon- 42.5 45 0.00097 26.4 4.1 22 154-175 4-25 (76)
286 PF13514 AAA_27: AAA domain 42.4 5.7E+02 0.012 29.1 15.5 18 239-256 310-327 (1111)
287 PRK00295 hypothetical protein; 42.2 1.5E+02 0.0033 22.5 7.4 26 162-187 10-35 (68)
288 KOG4603 TBP-1 interacting prot 41.9 2.8E+02 0.0061 25.5 12.2 70 160-229 82-151 (201)
289 TIGR03321 alt_F1F0_F0_B altern 41.8 1.6E+02 0.0035 27.4 8.5 36 181-216 93-128 (246)
290 COG0711 AtpF F0F1-type ATP syn 41.7 2.4E+02 0.0052 24.7 13.7 64 160-223 61-125 (161)
291 smart00787 Spc7 Spc7 kinetocho 41.6 2.2E+02 0.0049 27.9 9.7 15 211-225 249-263 (312)
292 TIGR03545 conserved hypothetic 41.3 2.1E+02 0.0045 30.4 10.0 16 156-171 190-205 (555)
293 KOG2391 Vacuolar sorting prote 41.3 3.9E+02 0.0085 27.0 12.0 65 132-196 214-278 (365)
294 PF10805 DUF2730: Protein of u 41.1 2E+02 0.0043 23.6 8.0 29 163-191 48-78 (106)
295 TIGR00634 recN DNA repair prot 41.0 2.3E+02 0.005 29.6 10.3 27 130-157 289-315 (563)
296 PRK02793 phi X174 lysis protei 40.9 1.7E+02 0.0036 22.6 7.7 9 172-180 23-31 (72)
297 PF05010 TACC: Transforming ac 40.9 3E+02 0.0065 25.5 10.1 69 125-193 41-112 (207)
298 smart00338 BRLZ basic region l 40.8 1E+02 0.0023 22.6 5.7 32 160-191 29-60 (65)
299 PF05791 Bacillus_HBL: Bacillu 40.4 1.9E+02 0.0041 25.9 8.4 48 158-205 104-151 (184)
300 PRK02119 hypothetical protein; 40.4 1.7E+02 0.0037 22.6 7.8 44 144-194 10-53 (73)
301 KOG0796 Spliceosome subunit [R 40.3 3.2E+02 0.007 27.1 10.5 48 204-257 186-233 (319)
302 PRK11578 macrolide transporter 40.0 2.7E+02 0.0058 27.1 10.0 6 302-307 256-261 (370)
303 PF08580 KAR9: Yeast cortical 39.9 2.9E+02 0.0062 30.2 11.0 57 166-225 237-293 (683)
304 KOG0964 Structural maintenance 39.8 6.5E+02 0.014 29.1 15.2 145 126-277 395-544 (1200)
305 PF10779 XhlA: Haemolysin XhlA 39.7 1.4E+02 0.0031 22.5 6.5 15 207-221 37-51 (71)
306 PRK06569 F0F1 ATP synthase sub 39.7 2.7E+02 0.0059 24.7 13.0 58 163-224 68-126 (155)
307 PF14193 DUF4315: Domain of un 39.6 77 0.0017 25.4 5.1 11 244-254 49-59 (83)
308 KOG4466 Component of histone d 39.3 3.3E+02 0.0071 26.7 10.2 46 128-173 27-73 (291)
309 PF04201 TPD52: Tumour protein 39.3 2.9E+02 0.0063 24.9 11.4 37 158-194 30-66 (162)
310 cd07665 BAR_SNX1 The Bin/Amphi 39.2 2.7E+02 0.0059 26.2 9.5 18 178-195 159-176 (234)
311 PRK12704 phosphodiesterase; Pr 39.0 2.4E+02 0.0051 29.6 10.0 9 298-306 225-233 (520)
312 cd07596 BAR_SNX The Bin/Amphip 38.8 2.6E+02 0.0056 24.2 10.8 27 158-184 146-172 (218)
313 PF07407 Seadorna_VP6: Seadorn 38.8 1.2E+02 0.0026 30.5 7.3 13 263-275 203-215 (420)
314 PF07407 Seadorna_VP6: Seadorn 38.7 2.5E+02 0.0054 28.4 9.4 106 158-283 33-140 (420)
315 PF08606 Prp19: Prp19/Pso4-lik 38.5 1.9E+02 0.0042 22.6 8.4 55 148-202 6-63 (70)
316 PF11544 Spc42p: Spindle pole 38.5 2E+02 0.0044 22.8 7.8 48 146-193 8-55 (76)
317 KOG3990 Uncharacterized conser 38.4 1.3E+02 0.0029 29.1 7.3 17 196-212 266-282 (305)
318 PRK15396 murein lipoprotein; P 38.4 1.7E+02 0.0036 23.2 6.8 33 152-184 27-59 (78)
319 PRK00295 hypothetical protein; 38.2 1.8E+02 0.0039 22.1 7.7 34 144-177 6-39 (68)
320 PF04849 HAP1_N: HAP1 N-termin 38.2 2.8E+02 0.0061 27.4 9.7 50 158-207 207-256 (306)
321 PF10186 Atg14: UV radiation r 38.1 3.2E+02 0.007 25.1 14.0 17 161-177 74-90 (302)
322 PF07798 DUF1640: Protein of u 38.1 2.8E+02 0.0062 24.5 10.4 85 143-228 58-151 (177)
323 PF12999 PRKCSH-like: Glucosid 38.0 2.2E+02 0.0047 26.0 8.3 17 122-138 115-131 (176)
324 KOG0994 Extracellular matrix g 37.9 6.4E+02 0.014 29.9 13.3 49 146-194 1601-1649(1758)
325 PF04136 Sec34: Sec34-like fam 37.7 2.8E+02 0.0061 24.3 14.0 44 211-254 95-148 (157)
326 PRK03947 prefoldin subunit alp 37.6 1.3E+02 0.0028 25.3 6.6 29 156-184 107-135 (140)
327 KOG0161 Myosin class II heavy 37.6 7.4E+02 0.016 30.6 14.6 62 165-226 944-1010(1930)
328 KOG3915 Transcription regulato 37.5 5.3E+02 0.011 27.4 16.0 68 123-198 498-565 (641)
329 PF03938 OmpH: Outer membrane 37.1 2.6E+02 0.0055 23.6 12.3 21 240-260 114-134 (158)
330 PF07464 ApoLp-III: Apolipopho 36.9 2.8E+02 0.0061 24.6 8.8 16 182-197 103-118 (155)
331 COG3879 Uncharacterized protei 36.7 3.7E+02 0.0081 25.8 10.0 31 147-177 54-84 (247)
332 PRK00106 hypothetical protein; 36.6 2.8E+02 0.006 29.4 10.0 13 295-307 237-249 (535)
333 PF04048 Sec8_exocyst: Sec8 ex 36.4 2.7E+02 0.0059 23.7 9.3 16 210-225 119-134 (142)
334 PRK14011 prefoldin subunit alp 36.4 2.2E+02 0.0048 24.9 7.9 39 162-200 93-131 (144)
335 PF05701 WEMBL: Weak chloropla 36.3 5.2E+02 0.011 26.9 14.1 25 168-192 239-263 (522)
336 PF01519 DUF16: Protein of unk 36.3 2.6E+02 0.0056 23.4 8.6 45 129-177 27-73 (102)
337 COG4477 EzrA Negative regulato 36.2 3.6E+02 0.0078 28.8 10.6 54 144-197 383-436 (570)
338 PF09731 Mitofilin: Mitochondr 36.2 5.2E+02 0.011 26.9 13.0 10 148-157 256-265 (582)
339 PF07989 Microtub_assoc: Micro 36.1 1.1E+02 0.0023 23.9 5.3 26 158-183 44-69 (75)
340 PRK09413 IS2 repressor TnpA; R 36.0 84 0.0018 26.0 5.1 37 154-195 75-111 (121)
341 PF08336 P4Ha_N: Prolyl 4-Hydr 36.0 2.6E+02 0.0057 23.4 9.9 26 159-184 24-49 (134)
342 PF08647 BRE1: BRE1 E3 ubiquit 35.9 2.3E+02 0.005 22.8 11.9 64 150-222 3-66 (96)
343 PF06632 XRCC4: DNA double-str 35.9 4.3E+02 0.0094 26.3 10.8 72 125-204 127-205 (342)
344 PRK04325 hypothetical protein; 35.9 2.1E+02 0.0045 22.2 7.9 44 144-194 10-53 (74)
345 KOG4643 Uncharacterized coiled 35.6 6.8E+02 0.015 29.0 13.0 70 130-199 372-446 (1195)
346 cd07624 BAR_SNX7_30 The Bin/Am 35.5 3.3E+02 0.0072 24.5 11.7 17 183-199 146-162 (200)
347 KOG2077 JNK/SAPK-associated pr 35.5 1.7E+02 0.0036 31.7 8.1 69 125-193 302-379 (832)
348 PF08898 DUF1843: Domain of un 35.3 1.1E+02 0.0023 22.8 4.8 43 135-177 9-51 (53)
349 PF11855 DUF3375: Protein of u 35.2 3.3E+02 0.0072 28.1 10.3 104 124-227 100-208 (478)
350 PRK07352 F0F1 ATP synthase sub 35.1 3.1E+02 0.0067 24.0 13.4 27 185-211 111-137 (174)
351 TIGR03319 YmdA_YtgF conserved 35.0 3E+02 0.0065 28.8 10.0 13 295-307 216-228 (514)
352 PF10805 DUF2730: Protein of u 34.9 2.1E+02 0.0045 23.5 7.2 49 143-191 35-85 (106)
353 COG1730 GIM5 Predicted prefold 34.8 2.2E+02 0.0048 25.0 7.7 34 155-188 99-132 (145)
354 PF15450 DUF4631: Domain of un 34.5 5.9E+02 0.013 27.1 14.7 91 124-215 311-401 (531)
355 PRK00846 hypothetical protein; 34.4 2.3E+02 0.0051 22.4 7.1 37 159-195 15-51 (77)
356 PRK14127 cell division protein 34.3 1.2E+02 0.0026 25.4 5.7 34 148-181 35-68 (109)
357 PRK14156 heat shock protein Gr 34.3 3.5E+02 0.0077 24.5 9.1 45 152-199 36-80 (177)
358 PRK10698 phage shock protein P 34.2 3.8E+02 0.0083 24.8 11.5 86 134-219 76-161 (222)
359 COG1340 Uncharacterized archae 34.2 4.7E+02 0.01 25.8 13.5 62 143-204 158-219 (294)
360 COG2825 HlpA Outer membrane pr 33.9 3.4E+02 0.0075 24.2 10.7 29 146-174 47-75 (170)
361 TIGR02338 gimC_beta prefoldin, 33.9 1.7E+02 0.0037 23.9 6.5 36 146-181 70-105 (110)
362 PF11853 DUF3373: Protein of u 33.8 32 0.00069 35.9 2.6 16 159-174 33-48 (489)
363 PF06717 DUF1202: Protein of u 33.6 88 0.0019 30.7 5.4 35 143-177 138-172 (308)
364 cd00890 Prefoldin Prefoldin is 33.6 1.2E+02 0.0027 24.5 5.7 22 156-177 100-121 (129)
365 PF05384 DegS: Sensor protein 33.4 3.5E+02 0.0076 24.1 9.2 19 147-165 38-56 (159)
366 COG0598 CorA Mg2+ and Co2+ tra 33.3 4.5E+02 0.0097 25.3 10.4 29 245-273 258-294 (322)
367 PF09304 Cortex-I_coil: Cortex 33.3 2.8E+02 0.006 23.4 7.6 54 142-195 8-61 (107)
368 PF09325 Vps5: Vps5 C terminal 33.3 3.5E+02 0.0076 24.1 10.7 19 177-195 162-180 (236)
369 PF11802 CENP-K: Centromere-as 33.3 4.6E+02 0.01 25.5 12.4 22 145-166 98-119 (268)
370 cd07681 F-BAR_PACSIN3 The F-BA 33.2 4.4E+02 0.0096 25.2 15.1 52 156-207 167-218 (258)
371 PRK15422 septal ring assembly 33.1 2.6E+02 0.0055 22.4 10.2 20 175-194 50-69 (79)
372 COG3074 Uncharacterized protei 33.1 2.5E+02 0.0053 22.2 9.2 51 145-195 20-70 (79)
373 PF06156 DUF972: Protein of un 33.1 2.3E+02 0.005 23.6 7.2 36 155-190 6-41 (107)
374 PF10267 Tmemb_cc2: Predicted 33.0 2.8E+02 0.006 28.3 9.0 77 147-224 223-314 (395)
375 PHA00727 hypothetical protein 32.4 3.8E+02 0.0082 25.3 9.1 49 177-225 56-104 (278)
376 PF04740 LXG: LXG domain of WX 32.2 3.5E+02 0.0076 23.8 11.8 16 237-252 178-193 (204)
377 PF10234 Cluap1: Clusterin-ass 32.2 4.7E+02 0.01 25.3 11.8 60 162-221 167-231 (267)
378 PF04344 CheZ: Chemotaxis phos 32.0 4.1E+02 0.0089 24.5 10.8 28 234-261 137-164 (214)
379 PF11365 DUF3166: Protein of u 31.7 1.6E+02 0.0036 24.2 5.9 39 145-183 3-41 (96)
380 PF03670 UPF0184: Uncharacteri 31.6 2.4E+02 0.0053 22.7 6.7 46 144-189 27-72 (83)
381 PRK13411 molecular chaperone D 31.6 6.7E+02 0.015 26.8 13.5 21 206-226 553-573 (653)
382 KOG2264 Exostosin EXT1L [Signa 31.5 1.4E+02 0.003 32.3 6.7 48 147-194 90-137 (907)
383 KOG4438 Centromere-associated 31.5 6.1E+02 0.013 26.3 13.0 42 158-199 174-215 (446)
384 PF03961 DUF342: Protein of un 31.5 2.5E+02 0.0055 28.4 8.6 24 163-186 333-356 (451)
385 PF06717 DUF1202: Protein of u 31.3 82 0.0018 30.9 4.8 44 147-190 135-178 (308)
386 cd07627 BAR_Vps5p The Bin/Amph 31.1 4.1E+02 0.0088 24.1 10.9 14 237-250 195-208 (216)
387 COG4477 EzrA Negative regulato 31.0 6.9E+02 0.015 26.8 12.2 21 205-225 302-323 (570)
388 PF15070 GOLGA2L5: Putative go 30.9 7.1E+02 0.015 26.9 13.1 36 144-179 30-65 (617)
389 PF04778 LMP: LMP repeated reg 30.9 3.1E+02 0.0067 24.6 7.9 15 161-175 48-62 (157)
390 TIGR03007 pepcterm_ChnLen poly 30.8 2.6E+02 0.0057 28.2 8.6 59 145-204 312-370 (498)
391 PF05103 DivIVA: DivIVA protei 30.8 16 0.00035 30.0 -0.0 28 150-177 25-52 (131)
392 TIGR03321 alt_F1F0_F0_B altern 30.8 4.4E+02 0.0096 24.5 14.2 8 264-271 184-191 (246)
393 PF11262 Tho2: Transcription f 30.7 2.1E+02 0.0046 27.6 7.6 41 162-202 51-91 (298)
394 PF11471 Sugarporin_N: Maltopo 30.7 1E+02 0.0023 23.1 4.3 25 162-186 30-54 (60)
395 PF13166 AAA_13: AAA domain 30.6 6.7E+02 0.015 26.5 12.9 18 244-261 460-477 (712)
396 PRK05687 fliH flagellar assemb 30.6 4.3E+02 0.0094 24.3 11.9 92 169-260 104-206 (246)
397 KOG3119 Basic region leucine z 30.4 1.6E+02 0.0034 28.2 6.5 34 160-193 218-251 (269)
398 PF09340 NuA4: Histone acetylt 30.4 1.2E+02 0.0026 23.9 4.8 32 151-182 3-34 (80)
399 PF11629 Mst1_SARAH: C termina 30.3 2.2E+02 0.0048 20.8 5.7 15 185-199 26-40 (49)
400 PF01166 TSC22: TSC-22/dip/bun 30.3 1.3E+02 0.0027 22.9 4.6 25 155-179 12-36 (59)
401 PF00957 Synaptobrevin: Synapt 30.3 2.6E+02 0.0056 21.6 11.9 59 144-202 4-62 (89)
402 cd07666 BAR_SNX7 The Bin/Amphi 30.3 4.8E+02 0.01 24.7 11.8 36 161-199 181-216 (243)
403 PF11887 DUF3407: Protein of u 30.3 4.7E+02 0.01 24.8 9.7 88 160-256 31-118 (267)
404 PF15066 CAGE1: Cancer-associa 30.2 4.1E+02 0.0089 28.0 9.7 37 168-204 482-518 (527)
405 PF13779 DUF4175: Domain of un 30.2 3.3E+02 0.0071 30.4 9.7 43 184-226 537-579 (820)
406 PF09726 Macoilin: Transmembra 30.1 5.2E+02 0.011 28.3 11.1 118 120-254 494-626 (697)
407 cd00890 Prefoldin Prefoldin is 29.9 2.2E+02 0.0047 23.0 6.6 30 163-192 93-122 (129)
408 PF11348 DUF3150: Protein of u 29.8 2.2E+02 0.0049 27.0 7.4 60 164-225 81-141 (257)
409 KOG0999 Microtubule-associated 29.8 1.7E+02 0.0038 31.4 7.1 55 144-202 108-162 (772)
410 TIGR02231 conserved hypothetic 29.7 5.6E+02 0.012 26.4 10.9 32 144-175 72-103 (525)
411 KOG4674 Uncharacterized conser 29.6 8.9E+02 0.019 29.8 13.3 111 143-254 1243-1353(1822)
412 PF08781 DP: Transcription fac 29.6 2.2E+02 0.0047 25.1 6.7 41 151-195 2-42 (142)
413 PF12329 TMF_DNA_bd: TATA elem 29.6 2.6E+02 0.0057 21.5 8.6 43 152-194 14-56 (74)
414 KOG4673 Transcription factor T 29.4 2.8E+02 0.0062 30.7 8.7 42 157-198 725-766 (961)
415 PF12761 End3: Actin cytoskele 29.4 4.1E+02 0.0089 24.6 8.8 9 196-204 135-143 (195)
416 COG1139 Uncharacterized conser 29.4 3.5E+02 0.0075 28.2 9.0 102 160-265 18-137 (459)
417 PF10267 Tmemb_cc2: Predicted 29.3 6.3E+02 0.014 25.8 15.3 16 163-178 225-240 (395)
418 cd07625 BAR_Vps17p The Bin/Amp 29.3 4.9E+02 0.011 24.5 10.6 43 165-207 158-200 (230)
419 PF11083 Streptin-Immun: Lanti 29.1 94 0.002 25.9 4.1 35 161-195 56-90 (99)
420 KOG1510 RNA polymerase II holo 29.0 3.5E+02 0.0075 23.8 7.8 50 138-188 80-129 (139)
421 cd09237 V_ScBro1_like Protein- 28.8 5.6E+02 0.012 25.1 11.4 47 201-251 302-348 (356)
422 KOG0979 Structural maintenance 28.8 7E+02 0.015 28.8 11.8 104 151-254 182-291 (1072)
423 PF01920 Prefoldin_2: Prefoldi 28.6 2.4E+02 0.0051 22.0 6.4 34 160-193 65-98 (106)
424 PF03962 Mnd1: Mnd1 family; I 28.5 4.4E+02 0.0096 23.8 12.1 27 144-170 70-96 (188)
425 PF10473 CENP-F_leu_zip: Leuci 28.5 4E+02 0.0087 23.3 14.6 31 161-191 49-79 (140)
426 KOG3647 Predicted coiled-coil 28.4 5.8E+02 0.013 25.2 9.9 48 150-197 126-180 (338)
427 PF13166 AAA_13: AAA domain 28.4 7.3E+02 0.016 26.2 14.6 47 166-212 365-411 (712)
428 PF04740 LXG: LXG domain of WX 28.3 4.1E+02 0.009 23.3 10.6 70 158-227 11-80 (204)
429 TIGR02209 ftsL_broad cell divi 28.3 2.5E+02 0.0054 21.3 6.3 22 166-187 33-54 (85)
430 PRK13169 DNA replication intia 28.2 3E+02 0.0064 23.1 7.1 37 144-180 9-45 (110)
431 PF15619 Lebercilin: Ciliary p 28.1 4.7E+02 0.01 23.9 10.9 35 128-163 75-109 (194)
432 PRK10803 tol-pal system protei 28.1 2E+02 0.0044 27.2 6.8 52 144-195 41-92 (263)
433 PF02646 RmuC: RmuC family; I 28.1 4.4E+02 0.0096 25.4 9.3 56 165-221 234-289 (304)
434 PRK14146 heat shock protein Gr 27.9 5E+02 0.011 24.2 11.1 53 145-200 56-108 (215)
435 PF14388 DUF4419: Domain of un 27.8 1.1E+02 0.0024 29.7 5.1 39 184-226 144-184 (299)
436 KOG0742 AAA+-type ATPase [Post 27.8 5E+02 0.011 27.4 9.8 22 171-192 150-171 (630)
437 PF09006 Surfac_D-trimer: Lung 27.6 1.5E+02 0.0033 21.4 4.4 23 160-182 2-24 (46)
438 PRK03947 prefoldin subunit alp 27.6 3.1E+02 0.0068 22.9 7.3 37 160-196 97-133 (140)
439 PF09403 FadA: Adhesion protei 27.6 4E+02 0.0086 22.9 11.3 23 146-168 23-45 (126)
440 KOG4848 Extracellular matrix-a 27.5 3.8E+02 0.0082 25.1 8.1 10 64-73 73-82 (225)
441 COG1422 Predicted membrane pro 27.5 3.5E+02 0.0076 25.2 8.0 19 165-183 73-91 (201)
442 PF14584 DUF4446: Protein of u 27.4 1.8E+02 0.0038 25.7 5.9 73 206-292 44-116 (151)
443 KOG3221 Glycolipid transfer pr 27.4 5.1E+02 0.011 24.1 13.3 84 176-259 94-196 (199)
444 PF08172 CASP_C: CASP C termin 27.4 3E+02 0.0065 26.1 7.8 41 152-192 81-121 (248)
445 cd07664 BAR_SNX2 The Bin/Amphi 27.3 5.2E+02 0.011 24.2 11.4 7 204-210 206-212 (234)
446 PRK00736 hypothetical protein; 27.2 2.8E+02 0.0061 21.1 7.3 34 144-177 6-39 (68)
447 cd07639 BAR_ACAP1 The Bin/Amph 26.9 5.1E+02 0.011 23.9 10.4 29 152-180 4-32 (200)
448 COG3352 FlaC Putative archaeal 26.9 4.7E+02 0.01 23.5 9.4 45 147-191 55-99 (157)
449 PRK02793 phi X174 lysis protei 26.8 3E+02 0.0064 21.2 7.8 44 144-194 9-52 (72)
450 PRK08475 F0F1 ATP synthase sub 26.8 4.4E+02 0.0095 23.1 12.6 88 124-215 45-144 (167)
451 PF05008 V-SNARE: Vesicle tran 26.8 2.8E+02 0.006 20.8 6.2 19 154-172 29-47 (79)
452 PF10473 CENP-F_leu_zip: Leuci 26.7 4.3E+02 0.0094 23.1 14.2 51 143-193 3-53 (140)
453 PF13514 AAA_27: AAA domain 26.7 8.2E+02 0.018 27.9 12.3 21 237-257 755-775 (1111)
454 PRK00846 hypothetical protein; 26.7 3.2E+02 0.007 21.6 7.9 39 143-181 13-51 (77)
455 PF12644 DUF3782: Protein of u 26.6 2.5E+02 0.0055 20.3 6.2 38 209-247 24-61 (64)
456 PF07334 IFP_35_N: Interferon- 26.4 1.4E+02 0.0031 23.6 4.6 22 168-189 4-25 (76)
457 PRK13460 F0F1 ATP synthase sub 26.2 4.4E+02 0.0096 23.0 13.8 37 181-217 104-140 (173)
458 PF03961 DUF342: Protein of un 26.1 4.3E+02 0.0094 26.7 9.2 20 155-174 339-358 (451)
459 PF11068 YlqD: YlqD protein; 26.1 3.4E+02 0.0073 23.4 7.2 39 162-200 25-71 (131)
460 PF04859 DUF641: Plant protein 26.1 2E+02 0.0044 24.9 5.9 30 147-176 98-127 (131)
461 KOG2629 Peroxisomal membrane a 26.1 4.8E+02 0.01 25.7 9.0 42 149-190 128-169 (300)
462 PF05278 PEARLI-4: Arabidopsis 26.1 3.6E+02 0.0077 26.2 8.1 27 154-180 204-230 (269)
463 KOG4286 Dystrophin-like protei 26.0 1.2E+02 0.0026 33.7 5.3 85 168-269 196-280 (966)
464 KOG0981 DNA topoisomerase I [R 26.0 2.4E+02 0.0051 30.6 7.3 47 158-204 637-695 (759)
465 KOG3478 Prefoldin subunit 6, K 26.0 2.5E+02 0.0054 24.0 6.2 36 152-187 78-113 (120)
466 TIGR00293 prefoldin, archaeal 25.9 2.3E+02 0.0051 23.2 6.1 23 159-181 95-117 (126)
467 KOG0996 Structural maintenance 25.9 1.1E+03 0.025 27.7 15.3 25 155-179 825-849 (1293)
468 PRK14149 heat shock protein Gr 25.6 5.3E+02 0.011 23.7 10.3 42 155-199 48-89 (191)
469 TIGR02209 ftsL_broad cell divi 25.5 2.3E+02 0.0049 21.5 5.6 23 159-181 33-55 (85)
470 PF15397 DUF4618: Domain of un 25.5 6.2E+02 0.013 24.4 16.0 33 123-155 37-75 (258)
471 PF09731 Mitofilin: Mitochondr 25.4 7.8E+02 0.017 25.6 11.2 12 268-279 446-457 (582)
472 PF13851 GAS: Growth-arrest sp 25.4 5.2E+02 0.011 23.5 15.3 66 130-195 14-79 (201)
473 cd00584 Prefoldin_alpha Prefol 25.3 2.5E+02 0.0054 23.1 6.2 41 148-188 85-125 (129)
474 PF08286 Spc24: Spc24 subunit 25.3 22 0.00048 29.6 -0.2 45 145-189 1-45 (118)
475 PF14182 YgaB: YgaB-like prote 25.2 3.6E+02 0.0078 21.6 7.1 54 143-196 24-79 (79)
476 PRK06231 F0F1 ATP synthase sub 25.1 5.3E+02 0.011 23.5 13.6 100 142-241 78-196 (205)
477 PF06008 Laminin_I: Laminin Do 25.0 5.7E+02 0.012 23.8 11.1 93 148-256 22-114 (264)
478 PRK08475 F0F1 ATP synthase sub 25.0 4.7E+02 0.01 22.9 11.9 78 148-225 51-128 (167)
479 PF06657 Cep57_MT_bd: Centroso 25.0 3.2E+02 0.0069 21.4 6.3 54 160-213 13-66 (79)
480 PF13094 CENP-Q: CENP-Q, a CEN 24.9 4.5E+02 0.0097 22.6 9.1 64 140-203 17-80 (160)
481 KOG4098 Molecular chaperone Pr 24.9 4.8E+02 0.01 23.0 11.8 104 146-260 18-121 (140)
482 PF04108 APG17: Autophagy prot 24.9 7.3E+02 0.016 25.0 14.0 125 125-249 221-352 (412)
483 cd04776 HTH_GnyR Helix-Turn-He 24.8 2.2E+02 0.0047 23.6 5.7 59 122-180 57-117 (118)
484 TIGR03007 pepcterm_ChnLen poly 24.8 7.3E+02 0.016 25.0 11.2 131 125-255 222-378 (498)
485 COG1317 FliH Flagellar biosynt 24.7 5.8E+02 0.013 23.8 13.7 134 125-272 52-196 (234)
486 KOG3771 Amphiphysin [Intracell 24.7 5.8E+02 0.013 26.7 9.7 89 154-256 140-228 (460)
487 PF02520 DUF148: Domain of unk 24.6 3.8E+02 0.0082 21.7 9.4 78 166-248 18-95 (113)
488 PF10360 DUF2433: Protein of u 24.5 2E+02 0.0044 25.0 5.6 48 173-220 14-63 (132)
489 PF01519 DUF16: Protein of unk 24.5 4.2E+02 0.0091 22.2 7.9 71 130-227 28-100 (102)
490 PF04508 Pox_A_type_inc: Viral 24.5 1.1E+02 0.0023 19.1 2.8 18 158-175 2-19 (23)
491 PF14197 Cep57_CLD_2: Centroso 24.4 3.3E+02 0.0071 20.9 6.9 49 144-192 20-68 (69)
492 PF13815 Dzip-like_N: Iguana/D 24.4 2.6E+02 0.0055 23.2 6.1 40 153-192 76-115 (118)
493 PF13815 Dzip-like_N: Iguana/D 24.4 2.6E+02 0.0057 23.1 6.1 41 146-186 76-116 (118)
494 KOG0946 ER-Golgi vesicle-tethe 24.4 3.1E+02 0.0067 30.8 8.0 96 138-256 843-938 (970)
495 PF04124 Dor1: Dor1-like famil 24.2 6.6E+02 0.014 24.4 12.8 97 152-253 9-105 (338)
496 TIGR01242 26Sp45 26S proteasom 24.2 1.7E+02 0.0037 28.4 5.8 38 159-196 1-38 (364)
497 KOG0240 Kinesin (SMY1 subfamil 24.1 9.3E+02 0.02 26.0 13.9 116 142-259 420-551 (607)
498 PRK13182 racA polar chromosome 24.1 5.2E+02 0.011 23.2 8.4 56 148-203 83-143 (175)
499 KOG3809 Microtubule-binding pr 24.1 3.7E+02 0.0081 28.2 8.1 68 124-196 511-578 (583)
500 PF06193 Orthopox_A5L: Orthopo 24.0 4.2E+02 0.0091 24.0 7.6 52 144-195 108-160 (166)
No 1
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.5e-44 Score=322.89 Aligned_cols=151 Identities=21% Similarity=0.314 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhh
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE 234 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~ 234 (310)
.+.+++.+++++..|++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.... ...
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~-~~~ 116 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL-EEA 116 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-hhH
Confidence 3566788999999999999999999999999999999999999999999999999999999999999999986532 345
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
.+|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 117 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA 188 (195)
T PRK14148 117 IAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFED-NTIFDVFQKGYML--NGRIVRAA 188 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCc-CEEEEEeeCCcEe--CCEeeecc
Confidence 689999999999999999999999999999999999999999999999999 9999999999999 89999998
No 2
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.2e-44 Score=319.82 Aligned_cols=148 Identities=24% Similarity=0.346 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhh
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~ 238 (310)
...+++++..|++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++....++...+++
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~ 101 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMR 101 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999998654444567899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
+||+||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 102 ~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~-gtI~~v~qkGY~l--~dRvLRpA 169 (176)
T PRK14151 102 EGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEP-NSVLKVFQKGYLL--NGRLLRPA 169 (176)
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCc-CeEEEEeeCCcEE--CCEEecCc
Confidence 99999999999999999999999999999999999999999999999 9999999999999 88999998
No 3
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6.4e-44 Score=329.74 Aligned_cols=149 Identities=36% Similarity=0.567 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhh
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKI 237 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l 237 (310)
+...|+++++.|++++++++++|+|++|||+|||||+.||++++++|++++|+++||||+|||+||+.++.........|
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l 147 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQAL 147 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHH
Confidence 34457778889999999999999999999999999999999999999999999999999999999999876544455789
Q ss_pred hhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 238 NNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 238 ~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
.+||+||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 148 ~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~-gtVv~v~qkGY~l--~~RVLRpA 216 (238)
T PRK14143 148 HRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPE-DVVLEELQRGYHL--GGRVLRHA 216 (238)
T ss_pred HHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCc-CeEEEEeeCCcee--CCEecccc
Confidence 999999999999999999999999999999999999999999999999 9999999999999 89999998
No 4
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.1e-44 Score=315.58 Aligned_cols=147 Identities=22% Similarity=0.349 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhh
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKI 237 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l 237 (310)
+...++.++..|++++++++++|+|++|||+|||||++||++++++||.++|+++||||+|||+||+.+... ...++
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~---~~~~l 95 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT---EPSPL 95 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc---hHHHH
Confidence 334577788999999999999999999999999999999999999999999999999999999999987542 34679
Q ss_pred hhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 238 NNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 238 ~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
.+|++||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 96 ~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~-g~Vv~v~qkGY~l--~~RvLRpA~ 165 (172)
T PRK14147 96 RDGLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAP-GHVVQVFQKGYLL--NERLLRPAL 165 (172)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCc-CEEEEEeeCCcEe--CCEeccCce
Confidence 999999999999999999999999999999999999999999999999 9999999999999 899999983
No 5
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.4e-44 Score=319.88 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=141.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchh
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEG 233 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~ 233 (310)
..+++...|++++..|++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+++.+. ++.
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~-~~~ 114 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD-DEA 114 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-chh
Confidence 3455667788889999999999999999999999999999999999999999999999999999999999988642 344
Q ss_pred hHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCC-CCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 234 EEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISR-VLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 234 ~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~-d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
..+|++||+||+++|.++|.++||++|+++|++|||++||||++++++ +.++ |+|++|+|+||+| +|||||||.
T Consensus 115 ~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~-gtVv~v~qkGY~l--~dRVLRpA~ 189 (194)
T PRK14162 115 AKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQK-DHVVQVLQKGYQY--KDRTLRPAM 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCc-CEEEEEeeCCcEe--CCEeeecce
Confidence 578999999999999999999999999999999999999999999975 6888 9999999999999 899999983
No 6
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.3e-43 Score=318.92 Aligned_cols=150 Identities=26% Similarity=0.383 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHh
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEK 236 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~ 236 (310)
.++..+.++|..|++++.+++++|+|++|||+|||||+++|++++++|++++|+++||||+|||+||+++.+. .+...+
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~-~~~~~~ 111 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESART-AEDMNS 111 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-cchHHH
Confidence 3466778888999999999999999999999999999999999999999999999999999999999988653 244678
Q ss_pred hhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 237 INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 237 l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
|++||+||+++|.++|.++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 112 l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~-gtVi~V~qkGY~l--~dRVLRPA~ 182 (194)
T PRK14153 112 IVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPD-NTIVDVCKPGYAL--NSKVIRPAM 182 (194)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCc-CEEEEEeeCCcEe--CCEEeeCcE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999 889999983
No 7
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1e-43 Score=322.70 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhc--chhhH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQ--TEGEE 235 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~--~e~~~ 235 (310)
+...+++++..|++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.... +...+
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~ 93 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVK 93 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHH
Confidence 3467788899999999999999999999999999999999999999999999999999999999999987532 23357
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 236 KINNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 236 ~l~~Gv~mi~kqL~~vL~k~GVe~I~~-vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
++++||+||+++|.++|+++||++|++ +|++|||++||||++++++++++ |+|++|+|+||+| ++||||||.
T Consensus 94 ~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~-gtVi~V~qkGY~l--~dRVLRPA~ 166 (208)
T PRK14155 94 NFIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAA-GGVLQVMQAGYEL--MGRLVRPAM 166 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCc-CeEEEEeeCCeEe--CCEeeccce
Confidence 899999999999999999999999998 89999999999999999999999 9999999999999 889999983
No 8
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.1e-43 Score=317.83 Aligned_cols=152 Identities=28% Similarity=0.395 Sum_probs=141.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcc
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT 231 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~ 231 (310)
......+...|++++..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.
T Consensus 40 ~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~---- 115 (196)
T PRK14145 40 QQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASS---- 115 (196)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcc----
Confidence 3345556678889999999999999999999999999999999999999999999999999999999999999873
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 232 EGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 232 e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
.+...+.+||+||+++|.++|.++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 116 ~~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRPA~ 191 (196)
T PRK14145 116 GDYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQP-NEIIEVFQKGYYL--KDKVIRPSL 191 (196)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCc-CEEEEEeeCCcEe--CCEeeccce
Confidence 234679999999999999999999999999999999999999999999999999 9999999999999 899999983
No 9
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.7e-43 Score=314.60 Aligned_cols=152 Identities=21% Similarity=0.261 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcch-hh
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTE-GE 234 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e-~~ 234 (310)
++-+..+++++++|++++++++++|+|++|||+|||||++||++++++||.++|+++||||+|||+||+.+.+.... ..
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~ 97 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVEV 97 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchhH
Confidence 33455667788899999999999999999999999999999999999999999999999999999999998754322 23
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 235 EKINNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~-vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
..+++|++||+++|.++|+++||++|++ +|++|||++||||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 98 ~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~-gtVi~v~q~GY~l--~dRVLRpA~ 171 (178)
T PRK14161 98 TNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAP-NSIITLMQSGYKI--RDRLLRPAT 171 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCc-CEEEEEeeCCcEe--CCEeecCce
Confidence 6799999999999999999999999998 79999999999999999999999 9999999999999 889999983
No 10
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.5e-43 Score=316.60 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHh
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEK 236 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~ 236 (310)
.+...++++++.|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.. .+..+
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~---~~~~~ 108 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADES---GDLEK 108 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc---chHHH
Confidence 344567788899999999999999999999999999999999999999999999999999999999997643 34578
Q ss_pred hhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 237 INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 237 l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
+.+||+||+++|.++|+++||++|+++|++|||++||||+++++ +.++ |+|++|+|+||+| +|||||||
T Consensus 109 l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~-gtVi~V~qkGY~l--~dRVLRPA 177 (185)
T PRK14139 109 LREGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEP-NTVVAVLQKGYTI--ADRVLRPA 177 (185)
T ss_pred HHHHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCc-CEEEEEeeCCcEe--CCEeccCc
Confidence 99999999999999999999999999999999999999999998 6677 9999999999999 88999998
No 11
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-43 Score=317.33 Aligned_cols=148 Identities=24% Similarity=0.386 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE 235 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~ 235 (310)
+.++..|++++..+++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.........
T Consensus 40 ~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~ 116 (193)
T PRK14150 40 DARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALK 116 (193)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHH
Confidence 3444556666665554 5799999999999999999999999999999999999999999999999987654334467
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 236 ~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
+|++||+||+++|.++|.++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 117 ~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~-gtI~~v~q~GY~l--~drvLRpA 187 (193)
T PRK14150 117 ALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEP-NTVMMVMQKGYTL--NGRLLRPA 187 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCc-CEEEEEeeCCeEe--CCEEecce
Confidence 89999999999999999999999999999999999999999999999999 9999999999999 89999998
No 12
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.6e-43 Score=315.43 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE 235 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~ 235 (310)
..+++.+++++.++++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++.+. +....
T Consensus 36 ~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~-~~~~~ 114 (191)
T PRK14140 36 AELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD-DEQTK 114 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cchHH
Confidence 34566788889999999999999999999999999999999999999999999999999999999999987543 24467
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 236 ~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
+|++||+||+++|.++|+++||++|+++|++|||++||||+++++++.++ |+|++|+|+||+| +|||||||.
T Consensus 115 ~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA~ 186 (191)
T PRK14140 115 SLLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFES-NEVVEELQKGYKL--KDRVIRPSM 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCc-CeEEEEeeCCeEe--CCEEecCcE
Confidence 89999999999999999999999999999999999999999999999999 9999999999999 889999983
No 13
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3e-43 Score=319.29 Aligned_cols=148 Identities=19% Similarity=0.343 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhh
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~ 238 (310)
+..|+++|+.|++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+....+....+|+
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~ 133 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMR 133 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHH
Confidence 45577788899999999999999999999999999999999999999999999999999999999987543334467899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecC-CCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 239 NSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~GVe~I~~-vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
+||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++ |+|++|+|+||+| +|||||||
T Consensus 134 eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~-gtVveV~qkGY~l--~dRVLRPA 202 (208)
T PRK14154 134 DGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKP-DTIIQVLQKGYQL--NGRVLRAA 202 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCc-CEEEEEeeCCcEe--CCEEecce
Confidence 999999999999999999999998 69999999999999999999999 9999999999999 89999998
No 14
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.8e-43 Score=319.90 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhc-----chhh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQ-----TEGE 234 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~-----~e~~ 234 (310)
..++++|..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++++.. +...
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~ 113 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGL 113 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhH
Confidence 34667788899999999999999999999999999999999999999999999999999999999987532 2345
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
.+|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 114 ~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA 185 (209)
T PRK14141 114 KALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPN-NTVVQVVQAGYTI--GERVLRPA 185 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCc-CEEEEEeeCCcEe--CCEeeccc
Confidence 789999999999999999999999999999999999999999999999999 9999999999999 89999998
No 15
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-43 Score=316.49 Aligned_cols=147 Identities=26% Similarity=0.394 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~G 240 (310)
.+.+++..|+.++++++++|+|++|||+|||||+++|++.+++||+++|+.+||||+|||+||+.++...++..++|++|
T Consensus 40 ~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~G 119 (193)
T COG0576 40 EEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEG 119 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34478899999999999999999999999999999999999999999999999999999999998876554444689999
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 241 v~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
|+||+++|.++|.++||+.|+++|+.|||++|+||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 120 vem~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~-~tVv~v~qkGY~l--~dRVLRpA~ 186 (193)
T COG0576 120 VEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEP-NTVVEVLQKGYKL--NDRVLRPAM 186 (193)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCC-CeEEEEeecCeee--CCEeccceE
Confidence 999999999999999999999999999999999999999999999 9999999999999 889999983
No 16
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.4e-43 Score=315.52 Aligned_cols=150 Identities=27% Similarity=0.393 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE 235 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~ 235 (310)
+.+...|++++..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++... +..+
T Consensus 39 ~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~--~~~~ 116 (194)
T PRK14158 39 ADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE--ESMS 116 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc--chHH
Confidence 34456788889999999999999999999999999999999999999999999999999999999999987642 3467
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 236 KINNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 236 ~l~~Gv~mi~kqL~~vL~k~GVe~I~~-vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
++++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++ |+|++|+|+||+| +|||||||.
T Consensus 117 ~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~-gtVv~v~qkGY~l--~dRVLRpA~ 189 (194)
T PRK14158 117 AIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEP-NTVVAVFQKGYLL--NERLLRPAM 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCc-CEEEEEeeCCcEe--CCEEeecce
Confidence 899999999999999999999999997 89999999999999999999999 9999999999999 899999983
No 17
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.4e-43 Score=317.41 Aligned_cols=152 Identities=31% Similarity=0.444 Sum_probs=141.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhc
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQ 230 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~ 230 (310)
.+..+++++..|++++..|++++.+++++|+|++|||+|||||+.||++.+++||+++|+++||||+|||+||+++..
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~-- 132 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEG-- 132 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc--
Confidence 344566677889999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 231 TEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 231 ~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
..+.+++||+||+++|.++|.++||++|++.| +|||++|+||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 133 --~~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~-gtVveV~qkGY~l--~dRVLRpA~ 206 (211)
T PRK14160 133 --SVEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGE-NEIVEVFQKGYKR--GDKVIRYSM 206 (211)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCc-CeEEEEeeCCcEe--CCEeeecce
Confidence 34579999999999999999999999999999 89999999999999999999 9999999999999 899999983
No 18
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.8e-43 Score=317.76 Aligned_cols=148 Identities=21% Similarity=0.379 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhh
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~ 238 (310)
...|+.++..|++++.+++++|+|++|||+|||||+.||++++++|++++|+++||||+|||+||+.+... ++...+|+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~-~~~~~~l~ 134 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQ-SEELKPFV 134 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-cchhhHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999987542 24457899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCC----eEeecCC
Q 021637 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTT----FLTRTKS 310 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~----RVLRPa~ 310 (310)
+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++ |+|++|+|+||+| +| ||||||.
T Consensus 135 ~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~-g~Vv~v~qkGY~l--~~r~~~RvLRpA~ 207 (215)
T PRK14146 135 EGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSE-ETVIDVYQAGYYY--KENEDKFTLRPAR 207 (215)
T ss_pred HHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCc-CEEEEEeeCCeEe--CCccCCeeccCce
Confidence 99999999999999999999999999999999999999999999999 9999999999999 56 7999983
No 19
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.6e-43 Score=314.45 Aligned_cols=147 Identities=16% Similarity=0.294 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhh
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~ 238 (310)
...+++++..|++++.+++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.... ...+++
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~--~~~~i~ 124 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKN--SDPSMH 124 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHccccc--chhHHH
Confidence 445677888999999999999999999999999999999999999999999999999999999999876532 235799
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
.||+||+++|.++|+++||++|+++|++|||++||||+++++++.++ |+|++|+|+||+| +|||||||.
T Consensus 125 ~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA~ 193 (199)
T PRK14144 125 EGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPP-NSVITVFQKGYKL--SDRVIRPAR 193 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCc-CeEEEEeeCCcEE--CCEEecccE
Confidence 99999999999999999999999999999999999999999999999 9999999999999 899999983
No 20
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.6e-43 Score=317.34 Aligned_cols=139 Identities=22% Similarity=0.404 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN 239 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~ 239 (310)
..|++++..|++++.+++++|+|++|||+|||||+.||++++++|++++|+++||||+|||+||+.+. .|+.
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~--------~l~~ 114 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG--------ELVG 114 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch--------hHHH
Confidence 45777889999999999999999999999999999999999999999999999999999999998763 4889
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 240 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 240 Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
||+||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| ++||||||
T Consensus 115 Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~-gtVv~v~qkGY~l--~~RVLRPA 181 (214)
T PRK14163 115 GFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTE-TTCVAILQPGYRI--GERTIRPA 181 (214)
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCc-CEEEEEeeCCcCc--CCEeccCc
Confidence 9999999999999999999999999999999999999999999998 9999999999999 89999998
No 21
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.3e-42 Score=313.43 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~G 240 (310)
.|+.++.+++.+ ++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.........+|++|
T Consensus 46 ~l~~~~~e~~~~---~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~G 122 (197)
T PRK10325 46 NLEAQLAEAQTR---ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEG 122 (197)
T ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHH
Confidence 444444444322 58999999999999999999999999999999999999999999999998865333456789999
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 241 v~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
|+||+++|.++|.++||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 123 v~m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~-~~Vv~v~qkGY~l--~drvlRpA 188 (197)
T PRK10325 123 IELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAP-GNVLGIMQKGYTL--NGRTIRAA 188 (197)
T ss_pred HHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCc-CeEEEEeeCCcEe--CCEeccCc
Confidence 999999999999999999999999999999999999999999999 9999999999999 89999998
No 22
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2e-42 Score=307.20 Aligned_cols=142 Identities=23% Similarity=0.300 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQS 243 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~m 243 (310)
+++.+|++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+++.... ....++++|++|
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~-~~~~~l~~Gv~m 108 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHD-EISLKIKEGVQN 108 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-chHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999876432 334679999999
Q ss_pred HHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 244 IYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 244 i~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
|+++|.++|+++||++|+++| +|||++||||++++++++++ |+|++|+|+||+| +|||||||.
T Consensus 109 i~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~-gtVv~v~qkGY~l--~dRVLRpA~ 171 (176)
T PRK14159 109 TLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQS-GEVVQVLQKGYKI--ADRVIRPTK 171 (176)
T ss_pred HHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCc-CeEEEEeeCCcEe--CCEeeecce
Confidence 999999999999999999999 69999999999999999999 9999999999999 899999983
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1e-41 Score=305.96 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQS 243 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~m 243 (310)
++++.|++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++... +....+|++||+|
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-~~~~~~l~~Gv~m 121 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAE-VDKESALTKGLEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-ccchHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999987653 2345789999999
Q ss_pred HHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 244 IYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 244 i~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
|+++|.++|+++||++|++.| +|||++||||+++++++.++ |+|++|+|+||+| +|||||||.
T Consensus 122 i~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~-gtVv~V~QkGY~l--~dRVLRPA~ 184 (191)
T PRK14149 122 TMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKEN-GKIVQVLQQGYKY--KGRVLRPAM 184 (191)
T ss_pred HHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCc-CEEEEEeeCCcEe--CCEEeeccE
Confidence 999999999999999999999 59999999999999999999 9999999999999 899999983
No 24
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.6e-41 Score=309.70 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~G 240 (310)
.+..+|..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.. +.+|
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~~--------~~~~ 152 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHSE--------MDDS 152 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc--------cchH
Confidence 46678889999999999999999999999999999999999999999999999999999999997642 4568
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 241 v~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
|+||+++|.++|++|||++|+++|++|||++||||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 153 ~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~-gtVi~V~QkGY~l--~dRVLRPA 218 (227)
T PRK14157 153 FKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEK-ETVDTVVEAGYRI--GDRVIRAA 218 (227)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCc-CEEEEEeeCCcee--CCEeccCc
Confidence 999999999999999999999999999999999999999999999 9999999999999 89999998
No 25
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.4e-40 Score=294.07 Aligned_cols=141 Identities=20% Similarity=0.232 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~G 240 (310)
.+.+++..+++++++++++|+|++|||+|||||+++|++++++||.++|+++||||+|||+||+++.. ...++.+|
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~----~~~~l~~G 106 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEG----LTDDVKKG 106 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcc----cchhHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999998753 22468999
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCC-CCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISR-VLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 241 v~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~-d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
|+||+++|.++|+++||++|++. +|||++||||++++++ ++++ |+|++|+|+||+| +|||||||.
T Consensus 107 v~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA~ 172 (177)
T PRK14156 107 LEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPA-DSIAQVFQKGYKL--HERLLRPAM 172 (177)
T ss_pred HHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCc-CEEEEEeeCCcEe--CCEEeecce
Confidence 99999999999999999999985 9999999999999864 5888 9999999999999 889999983
No 26
>PRK14142 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.4e-39 Score=295.73 Aligned_cols=133 Identities=25% Similarity=0.384 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQ 247 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kq 247 (310)
.+.+++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++.... ..+++||+++
T Consensus 44 ~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~~-------~~~v~~I~kq 116 (223)
T PRK14142 44 HTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLE-------SGPLKSVADK 116 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhccccc-------cHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999875321 1357899999
Q ss_pred HHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 248 LVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 248 L~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
|.++|+++||++|+++|++|||++||||+++++++..++|+|++|+|+||+| ++||||||
T Consensus 117 L~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL--~dRVLRPA 176 (223)
T PRK14142 117 LDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQL--GEQVLRHA 176 (223)
T ss_pred HHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEe--CCEeccCc
Confidence 9999999999999999999999999999999988765437999999999999 89999998
No 27
>PRK14164 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.4e-39 Score=291.81 Aligned_cols=134 Identities=24% Similarity=0.396 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhH-HH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS-YQ 242 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~G-v~ 242 (310)
.++..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++... .+| ++
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~--------~~g~l~ 148 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGDL--------NEGPLK 148 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------cccHHH
Confidence 457788899999999999999999999999999999999999999999999999999999986532 234 88
Q ss_pred HHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 243 SIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 243 mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
||+++|.++|++|||++|+++|++|||++||||+++++++ . ++|++|+|+||+| |+||||||.
T Consensus 149 ~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~-~~V~~V~qkGY~l--~dRVLRPA~ 211 (218)
T PRK14164 149 AFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--E-KVLGTVLRKGYRM--GDRVLRTAM 211 (218)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--C-CEeeEEeeCCcEE--CCEeccCce
Confidence 9999999999999999999999999999999999998764 5 8999999999999 899999983
No 28
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=282.17 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhc------c
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQ------T 231 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~------~ 231 (310)
|+..|.+.++ ++++..+++|+|+|..||++|+|+|++|..++++.||+++|+++||.|.|||++|.++++.+ +
T Consensus 72 e~~~l~~~~k-~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~d~~ 150 (236)
T KOG3003|consen 72 EKALLEKVLK-LEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQK 150 (236)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcccccc
Confidence 3334444443 44555999999999999999999999999999999999999999999999999999998876 3
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 232 EGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 232 e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
.+.+++++|+.||++||.++|.+||++.++|+|++||||.||||++++...+++ |||.+|.++||+| |||+||||
T Consensus 151 ~~L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~p-gtV~~v~k~Gy~L--~~R~IRPA 225 (236)
T KOG3003|consen 151 KDLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEP-GTVALVTKKGYKL--NGRVIRPA 225 (236)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCC-CeEEEEeccCccc--CCeeechh
Confidence 456789999999999999999999999999999999999999999999988999 9999999999999 89999998
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=100.00 E-value=5.7e-37 Score=260.92 Aligned_cols=133 Identities=30% Similarity=0.425 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHH
Q 021637 174 SAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILG 253 (310)
Q Consensus 174 ~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~ 253 (310)
++++++|+|++|||+|||||+.+++++++++++++|+++|||++|+|+||+++.... +...++.+|++||+++|.++|.
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~-~~~~~~~~g~~~i~~~l~~~L~ 80 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE-EELKNLVEGVEMTLKQLLDVLE 80 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999986543 4567899999999999999999
Q ss_pred hCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecCC
Q 021637 254 SLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS 310 (310)
Q Consensus 254 k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa~ 310 (310)
++||++|+++|++|||++|+||+++++++.++ |+|++|+|+||++ +|||||||.
T Consensus 81 ~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~-~~I~~v~~~GY~~--~~rvlRpA~ 134 (137)
T cd00446 81 KHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEP-GTVVEVLQKGYKL--GDRVLRPAM 134 (137)
T ss_pred HCCCEEECCCCCCCCHHHheeeeeecCCCCCc-CEEEEEeecCeEE--CCEEecccE
Confidence 99999999999999999999999999999888 9999999999999 899999983
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=100.00 E-value=7.6e-37 Score=265.14 Aligned_cols=151 Identities=34% Similarity=0.479 Sum_probs=132.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhh
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE 234 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~ 234 (310)
.+++...++.++..|++++++++++++|+.|+|+||++|+.++.++++.++.++|+++|||++|+|++|+.+.. ..+..
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~-~~~~~ 87 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAK-SNEEE 87 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-S-HHCTC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchH
Confidence 34455667777888889999999999999999999999999999999999999999999999999999999875 23456
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
.++.+||.|++++|.++|.++||++|+++|++|||++|+||++++++++++ |+|++|+++||++ +|||||||
T Consensus 88 ~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~-~~I~~v~~~GY~~--~~rvlRpA 159 (165)
T PF01025_consen 88 ESLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEP-GTIVEVVRPGYRL--GGRVLRPA 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-C-TBEEEECC-EEEE--TTEEEE-E
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCc-CeEEEEEecCEEE--CCEEeeee
Confidence 789999999999999999999999999999999999999999999999888 9999999999999 89999998
No 31
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.45 Score=44.76 Aligned_cols=94 Identities=22% Similarity=0.172 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021637 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220 (310)
Q Consensus 141 ~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnL 220 (310)
..++.+.+++.+....++ .+|+.++.-.-++...+.++..|...|+.+|..+.-...........+....-+.+.. ++
T Consensus 69 ~~ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~-~~ 146 (236)
T KOG3003|consen 69 SLAEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEES-EK 146 (236)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-cc
Confidence 344555566555544444 7777777666677889999999999999999999887766666677777777777776 55
Q ss_pred HHHHhchhhcchhhHh
Q 021637 221 ERAKTQIKVQTEGEEK 236 (310)
Q Consensus 221 ERAl~~~~~~~e~~~~ 236 (310)
+.....+....+++..
T Consensus 147 ~d~~~~L~~l~eGl~m 162 (236)
T KOG3003|consen 147 EDQKKDLKDLFEGLSM 162 (236)
T ss_pred cccchHHHHHHhHHHH
Confidence 5555555444444443
No 32
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.74 E-value=0.55 Score=39.13 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=48.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERA 223 (310)
..+..++..+..|-+++..|++++.++-+...++.-|-+++|+|+.+............-...+.+-.|||.+-
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
Confidence 34555666667777778888888888888888999999999999987665211122222223344445555444
No 33
>PTZ00464 SNF-7-like protein; Provisional
Probab=91.65 E-value=4.1 Score=37.75 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAER 177 (310)
Q Consensus 162 L~~el~~Le~el~elk 177 (310)
|+.+|..+.+++..++
T Consensus 30 l~kKi~~ld~E~~~ak 45 (211)
T PTZ00464 30 VDARINKIDAELMKLK 45 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 34
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.52 E-value=0.62 Score=43.43 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=42.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+...+++++++.+.+.+.++++..+|+++.+++.+.|-|+..|.++++.+.+.
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 44455667777777788888888888888888889999999999888887653
No 35
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=91.32 E-value=1.6 Score=32.55 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=45.7
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
+|+.+|..++..+..+++.|...+..++.++...++.-.|+..-.+|.-...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 5788999999999999999999999999999999999999988888875543
No 36
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=91.16 E-value=8.8 Score=37.05 Aligned_cols=105 Identities=21% Similarity=0.181 Sum_probs=60.5
Q ss_pred HHHHHHHhhhhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021637 145 AAEIEALLKSFEDEKIDLER------KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLD 218 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~------el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlD 218 (310)
+.........+.+++..|+. +|..|+.|+..+....+-+.|.+.||+|..-||-..++-.|.....+.+.=+..
T Consensus 140 l~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~ 219 (271)
T PF13805_consen 140 LQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAE 219 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555542 556677777777777777778899999999999999988888888877765555
Q ss_pred HHHHHHhchhhcc---hhhHhhhhHHHHHHHHHH
Q 021637 219 NFERAKTQIKVQT---EGEEKINNSYQSIYKQLV 249 (310)
Q Consensus 219 nLERAl~~~~~~~---e~~~~l~~Gv~mi~kqL~ 249 (310)
.=.+-++-++... .+....+.|+.-+...|.
T Consensus 220 ~gk~Ll~lldd~pv~PG~~r~~Y~g~~~t~qIl~ 253 (271)
T PF13805_consen 220 YGKRLLELLDDTPVVPGDTRPPYDGYEQTRQILN 253 (271)
T ss_dssp HHHHHHTTS------TTS-------HHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHH
Confidence 4444444443211 112345677665443333
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.08 E-value=6 Score=37.49 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=58.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFER 222 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLER 222 (310)
..+...+..++.+++.+...+.+++.++++++.++.++..|.+-+|+|..+.......--.+.-+.+|-.=++.+.+
T Consensus 27 ~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~ 103 (239)
T COG1579 27 KEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKE 103 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 36667788888888999999999999999999999999999999999998887776444444445555444444333
No 38
>PRK11637 AmiB activator; Provisional
Probab=89.24 E-value=6.1 Score=39.57 Aligned_cols=59 Identities=7% Similarity=0.059 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
+..++.++..++.+++.++.+|..++.++..++.++..++++.+..++.+.+-...+.+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555554444444
No 39
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=88.86 E-value=7.3 Score=35.57 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021637 146 AEIEALLKSFEDEKIDL-------ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL 214 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L-------~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLL 214 (310)
..++..+.........| ..++..++.++.++..+...+..+|+++.+++.+|+......=+..|-..|.
T Consensus 118 ~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~ 193 (216)
T cd07627 118 QSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVE 193 (216)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544544 4688899999999999999999999999999999998876655555544443
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.81 E-value=21 Score=34.40 Aligned_cols=62 Identities=15% Similarity=0.332 Sum_probs=39.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A 205 (310)
....+++++.++.++++++..++.++++++++.+..+.+++.+.+-.+.|+....+-+.+.+
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666677777777777777777777666666655544444443
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.41 E-value=7.4 Score=30.26 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
+..++-|+.+|+++...|..+...++....+++.|..+...|+..=
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555567777777777777777777666543
No 42
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=88.34 E-value=6 Score=33.73 Aligned_cols=50 Identities=2% Similarity=0.233 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021637 174 SAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (310)
Q Consensus 174 ~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERA 223 (310)
......+.+...++..+.....++.+.........+...+-.++..+-..
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777777777776666666666555443
No 43
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.33 E-value=2.4 Score=31.57 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
++.++|+++..+...++.++.+++.+.+.++.+++-..++..=||
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888887777777766655554443
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.33 E-value=18 Score=34.37 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
..++++++..+..++..|++++..+++++.+...++.-++.+.+-+...+.+
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555554443
No 45
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.52 E-value=6.4 Score=37.85 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=27.7
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.++.+++.+...++++++.|..+|.++..++++.++++-+..+++.-+.+.+
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555554444443
No 46
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=84.78 E-value=27 Score=30.74 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 021637 176 ERARILRISADFD 188 (310)
Q Consensus 176 lkdk~lR~~ADfe 188 (310)
|+.++..+++++.
T Consensus 56 Lk~~i~~lq~~~~ 68 (155)
T PF06810_consen 56 LKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 47
>PRK14163 heat shock protein GrpE; Provisional
Probab=84.66 E-value=24 Score=33.01 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
..+++.++..++.++.+++.++.-+.++.+.++. |...|.+++++.......
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rk---R~~kE~e~~~~~a~~~~~ 93 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRR---RVERDRVTVKEIAVANLL 93 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777666664 444566666665544433
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.31 E-value=16 Score=38.44 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=63.7
Q ss_pred HHHHHHHHHHH--hcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 126 IMETLQSYKEA--LASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 126 ~~~~~r~y~ea--~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
++++.+.|.++ -..+..+++-+....+..++.|++-++..+..++.++..++...-|+..++.-+|+.+..|..--
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr-- 199 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR-- 199 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH--
Confidence 33444455555 33455566666666777777888888888888888888888888888888888888777776432
Q ss_pred HHHHHHHHHhhhhhhHHHH
Q 021637 204 NAQGEVMERLLQVLDNFER 222 (310)
Q Consensus 204 ~A~~~~ikdLLpVlDnLER 222 (310)
.-.+.-+.+||.=++.+.+
T Consensus 200 ~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3334445556655655553
No 49
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.21 E-value=13 Score=33.24 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 123 TSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 123 ~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
...|..-|+.|+.-.. ....++.+...++.++..|+++++.|++++..++.++.-..-||+-+-..+.|-+.
T Consensus 82 l~~vI~fLq~l~~~~~-----~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 82 LQDVISFLQNLKTTNP-----SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555553322 23444555666677777777777777777777777777777777666665555443
No 50
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.09 E-value=33 Score=33.21 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=54.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS--LVTNAQGEVMERLLQVLDNFE 221 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~--~~~~A~~~~ikdLLpVlDnLE 221 (310)
-.++++++|.+++..+.+|+.....|.-+...+|+++--..+.|-..---++.+... +.+....+.|++|=..-|+||
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 344556666667777777777777777777777777666556554444444444433 344556677788888889999
Q ss_pred HHHhc
Q 021637 222 RAKTQ 226 (310)
Q Consensus 222 RAl~~ 226 (310)
||..+
T Consensus 126 rakRa 130 (333)
T KOG1853|consen 126 RAKRA 130 (333)
T ss_pred Hhhhh
Confidence 98643
No 51
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.36 E-value=7.1 Score=32.80 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
..+..++..+..+-+++..|++++.++-+...+++-|-+++|+|+.+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666677777888888888888888899999999999999975
No 52
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.18 E-value=45 Score=32.51 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=19.8
Q ss_pred hHhhhhHHHHHHHHHHHHHHhCCCe----eecCCCC
Q 021637 234 EEKINNSYQSIYKQLVEILGSLGVV----PVETVGN 265 (310)
Q Consensus 234 ~~~l~~Gv~mi~kqL~~vL~k~GVe----~I~~vGe 265 (310)
...+..++..+.=.|..+..++|++ ++-|.|.
T Consensus 168 W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs 203 (314)
T PF04111_consen 168 WNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGS 203 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCC
Confidence 4567777777777777787888877 3455563
No 53
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=83.05 E-value=2.9 Score=35.22 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=52.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQ-GEVMERLLQVLDNFERAK 224 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~-~~~ikdLLpVlDnLERAl 224 (310)
.+..++..+..+-.++..|++.+.++-+....++-|-+++|+|+....-....... ..-.++..+..|||.+-.
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~lY 83 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARLY 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHHH
Confidence 34556667778888888999999999999999999999999999762111111111 233455778888888764
No 54
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.05 E-value=10 Score=34.30 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 135 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 135 ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.|+..|++.-+.+.=.....++++...+++.+..+...+..++..+..+...+..++.+.
T Consensus 76 ~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 76 LALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556655444444445555666666666666666666666666666666666555443
No 55
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.02 E-value=27 Score=29.57 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=45.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
-..+..+..+...++.++..|+.++...+..+....+.|+.-+..+++++..+...
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888888888888888888888998888888888766544
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.95 E-value=13 Score=34.20 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=3.8
Q ss_pred Ccccccc
Q 021637 94 GAVGIED 100 (310)
Q Consensus 94 ~~~~~~~ 100 (310)
|.+-|.+
T Consensus 66 ~w~~Vr~ 72 (206)
T PRK10884 66 NYAQIRD 72 (206)
T ss_pred CEEEEEe
Confidence 4555654
No 57
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=81.83 E-value=2.7 Score=33.47 Aligned_cols=36 Identities=14% Similarity=0.426 Sum_probs=26.7
Q ss_pred hhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCC
Q 021637 215 QVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGV 257 (310)
Q Consensus 215 pVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GV 257 (310)
+..|.+..|+.++.. =+-.+.+|.+++.++|.+.||
T Consensus 50 ~l~d~l~~av~~FE~-------~HP~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 50 SLVDRLNEAVERFEA-------SHPKLAGILRNIMDSLANMGI 85 (85)
T ss_pred hHHHHHHHHHHHHHH-------hCCcHHHHHHHHHHHHHHCCC
Confidence 456777777665532 245678899999999999997
No 58
>PRK14143 heat shock protein GrpE; Provisional
Probab=81.58 E-value=39 Score=31.95 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=34.9
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEV 209 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ 209 (310)
.+.+++.++..++.++.+++.++--+.++.+.++. |...|.+++++......-...--.+.+|
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RK---R~~kE~e~~~~~a~~~~~~~lLpV~DnL 130 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRK---RTSREQEDLRLQLKCNTLSEILPVVDNF 130 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455556666666777777666666666666554 4445556666555444443333333333
No 59
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.39 E-value=16 Score=35.53 Aligned_cols=81 Identities=16% Similarity=0.362 Sum_probs=42.2
Q ss_pred HHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 132 SYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVME 211 (310)
Q Consensus 132 ~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ik 211 (310)
-+++.+....--|+.++|..+..+.+|..--+=+|+.|++-+...|.+.--...++-.++ .=-.
T Consensus 7 EWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~Lk----------------REnq 70 (307)
T PF10481_consen 7 EWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALK----------------RENQ 70 (307)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh----------------hhhh
Confidence 345555544455677777766666665554444444444444433333332222222222 2223
Q ss_pred HhhhhhhHHHHHHhchh
Q 021637 212 RLLQVLDNFERAKTQIK 228 (310)
Q Consensus 212 dLLpVlDnLERAl~~~~ 228 (310)
.|++++|+|+++.+-+.
T Consensus 71 ~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLS 87 (307)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 57788888888865443
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.34 E-value=61 Score=37.12 Aligned_cols=83 Identities=17% Similarity=0.321 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
.++.-+.....++.. ..+...++|+.+..+..+++.+..++..++.++...+.++.+++.+.++.+.+..+.++..+..
T Consensus 604 ~L~~~l~~~~~~l~~-~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQS-AEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555532 3345678888999999999999999999999999999999999999999988888777766554
Q ss_pred HHHH
Q 021637 205 AQGE 208 (310)
Q Consensus 205 A~~~ 208 (310)
....
T Consensus 683 ~~~~ 686 (1201)
T PF12128_consen 683 IEEQ 686 (1201)
T ss_pred HHHH
Confidence 4443
No 61
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=81.32 E-value=25 Score=33.00 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
.++..++.++.+++.+...+..+|+++.+++.+|+......=+..|-..|
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999877655544444333
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.81 E-value=78 Score=34.07 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHh
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN-AQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~-A~~~~ikdLLpVlDnLERAl~ 225 (310)
+++..+...++.|+.++.+|+..+.+++++.++++.+..+-+.+.+.. -+..=+..+-.-++.|++.+.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455444444443333322211 112223334445566666653
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.74 E-value=48 Score=37.62 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------HHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF-------RKRTEK------ERLSLVTNAQGEVME 211 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~-------RKRt~k------E~e~~~~~A~~~~ik 211 (310)
..+++.+++.++.|+..++..+..|.+++.+++.++....-+..+. +|+.+. .+...+...+..|-.
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~ 475 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGP 475 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcch
Confidence 3444444455555555555555555555555555555444444333 222221 122223445556667
Q ss_pred HhhhhhhHHHHHHhc
Q 021637 212 RLLQVLDNFERAKTQ 226 (310)
Q Consensus 212 dLLpVlDnLERAl~~ 226 (310)
.+..+++-++|....
T Consensus 476 ~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 476 NMPQLLRAIERRKRR 490 (1074)
T ss_pred hhHHHHHHHHHHHhc
Confidence 777777777777655
No 64
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.54 E-value=41 Score=31.32 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
.+.+..+.++...|..++..++++++.++.+..++..-.++.++
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666655555544444444444433
No 65
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=79.48 E-value=16 Score=31.35 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 176 ERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 176 lkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
+++.|.-+...|+++++.+++++.
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~ 110 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIA 110 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544
No 66
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.15 E-value=15 Score=28.51 Aligned_cols=39 Identities=10% Similarity=0.338 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+-+..|..++..+++++..++.++....++.++++.|+.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777788888888888888888887764
No 67
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.93 E-value=7.1 Score=34.83 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
++.+.++++++++++++....+|.+.+++..+.-
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777788888888776653
No 68
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=78.84 E-value=36 Score=31.28 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
.++..+++++.++..+...+..+|+++..++.+|+......=+..|=..|
T Consensus 149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l 198 (224)
T cd07623 149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDII 198 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999887655555544433
No 69
>PRK11637 AmiB activator; Provisional
Probab=78.83 E-value=17 Score=36.39 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=16.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
.++..+..++.++..++.+|..+++++.+++.++......
T Consensus 86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443333333
No 70
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.14 E-value=38 Score=33.05 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=29.6
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
.....+++.++..++.|...+.+++.+|+++..++...+..+.++.+.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777666665555544444443
No 71
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.93 E-value=48 Score=29.14 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=17.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+...+.....+.+++..+++.+.++...+.....++...+
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444444444444444444444444444444444443
No 72
>PRK15396 murein lipoprotein; Provisional
Probab=77.75 E-value=11 Score=29.81 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=44.5
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.++.++.+++..+..+.+.+...+..++..+...++.-.|+..-.+|.-..+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5888888899999999999999999999999889988889888888876544
No 73
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.51 E-value=6.3 Score=40.76 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.++++.+....+++++++.|++++..+.++..+++.++..+.+|+..++.++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555566666666666666666555
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.95 E-value=24 Score=30.21 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCC--ChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 126 IMETLQSYKEALASN--DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 126 ~~~~~r~y~ea~~~~--~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
|-.+|..+..-.... -..++..+..++..++..+..|+.+++.++.++..++.+...+...+.+.......++++
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666555444321 112344444555555555555555555555555555555555555555555555555443
No 75
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.87 E-value=35 Score=36.53 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=37.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL---QVLDNFERA 223 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLL---pVlDnLERA 223 (310)
.++..++.++.|+..|+.++.++++++..|++++-++..+.+ ...+..+|.. +++.-+..+=+.|. ..+|.|++-
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~-~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIR-ARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555554444 3333333332 12233333333333 345666665
Q ss_pred Hhch
Q 021637 224 KTQI 227 (310)
Q Consensus 224 l~~~ 227 (310)
++.+
T Consensus 504 l~~l 507 (652)
T COG2433 504 LAEL 507 (652)
T ss_pred HHHH
Confidence 5443
No 76
>PLN02939 transferase, transferring glycosyl groups
Probab=76.70 E-value=1.3e+02 Score=34.11 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=33.5
Q ss_pred CCCCccCCchHHHHHHHHHHHHhcC---CChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 115 TSDAEEAPTSFIMETLQSYKEALAS---NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 115 ~~~~~~~~~~~~~~~~r~y~ea~~~---~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
.++..+...-+++.++...+.+--| =+.+.+..++ .++.+-.|++.|+.+|.-|+-.+.+-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 119 SKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALE-DLEKILTEKEALQGKINILEMRLSET 182 (977)
T ss_pred cccccccccccHHHHHHHHHHHHhhhHhHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 3445556666677776655544322 2334443332 34555566667777777666666653
No 77
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=76.54 E-value=28 Score=38.05 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=5.2
Q ss_pred CceeEEec
Q 021637 287 SQILNQVC 294 (310)
Q Consensus 287 gtVv~V~q 294 (310)
|+|+.+-.
T Consensus 640 g~v~~i~~ 647 (771)
T TIGR01069 640 GKIVQILG 647 (771)
T ss_pred EEEEEEcC
Confidence 67777653
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.53 E-value=76 Score=37.49 Aligned_cols=69 Identities=13% Similarity=0.260 Sum_probs=44.0
Q ss_pred HHHHhc--CCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 133 YKEALA--SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (310)
Q Consensus 133 y~ea~~--~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~ 201 (310)
|.+|.. +++.....+++..++.++.+...+++++..++++...++..+.-+...+++..++.+.....+
T Consensus 973 y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~ 1043 (1486)
T PRK04863 973 YEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQEL 1043 (1486)
T ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665 556666677777777777777777766666666666666666555555555555555544443
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.51 E-value=82 Score=35.90 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=23.7
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCC---CCCCCCceeee
Q 021637 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNP---FDPLVKPRVGL 277 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~---FDPn~HEAV~~ 277 (310)
..|...+--++..+..-=..+.-.+++|+|.- -||.||-||..
T Consensus 471 s~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~ 516 (1074)
T KOG0250|consen 471 SAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIER 516 (1074)
T ss_pred hhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHH
Confidence 33433333344444444444455677777753 47777777654
No 80
>smart00338 BRLZ basic region leucin zipper.
Probab=76.47 E-value=8.7 Score=28.45 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=24.6
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
.+.+++..+..+..++..|..++..|+.++..+++.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666676777777777777777777666666543
No 81
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.37 E-value=45 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
++.+|+..|.-+|.-|+.++.++.+.+..++-++.
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777888888887777777777664
No 82
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.27 E-value=1e+02 Score=32.12 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHH
Q 021637 180 ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEIL 252 (310)
Q Consensus 180 ~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL 252 (310)
.-|....+++--+|.++|++..+ .-...+++++.-..+.++.-.+..+. .....-+-+..+..|+.+++
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~kl~~~~e~~~~---~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRGKLKELEEREKE---ALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHh
Confidence 34445555555566666665555 44556666666666666555433221 12223344555666666655
No 83
>PRK09039 hypothetical protein; Validated
Probab=75.88 E-value=31 Score=34.06 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhC
Q 021637 240 SYQSIYKQLVEILGSL 255 (310)
Q Consensus 240 Gv~mi~kqL~~vL~k~ 255 (310)
....+..++..+|..+
T Consensus 238 ~~~~~L~~ia~~l~~~ 253 (343)
T PRK09039 238 EGQAEIAKLAAALIEL 253 (343)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344455555555543
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.48 E-value=95 Score=31.89 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
++.+..+....++...|+.+|..+++++..+...+.+...+..++++++
T Consensus 48 ~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 48 AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 3334444444444555555555555555555555555555555555443
No 85
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.47 E-value=55 Score=28.54 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEV 209 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ 209 (310)
.++..++.++.+++.....+..+|+-+..++..|+......-...|
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dl 190 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDL 190 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888888888887665444333
No 86
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.26 E-value=62 Score=34.37 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhCC
Q 021637 243 SIYKQLVEILGSLG 256 (310)
Q Consensus 243 mi~kqL~~vL~k~G 256 (310)
.+.+.+..+|.++-
T Consensus 506 ~le~~~~~~f~~l~ 519 (650)
T TIGR03185 506 QLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555554
No 87
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=75.07 E-value=41 Score=30.22 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLD 218 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlD 218 (310)
.++..++.++.+++.++..+..+|+++-+++.+|++.....=...|-.-|+..++
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888889999998888888887776665555555444443
No 88
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.02 E-value=39 Score=29.48 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERA 223 (310)
...+..+|..|++++.+++..+..+.+++.+++....-+-....-.....=+..|-.-++.|...
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555666666555433322222222333344444445555443
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.61 E-value=97 Score=31.62 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=6.1
Q ss_pred HHHHhhhhhhHHHHHH
Q 021637 148 IEALLKSFEDEKIDLE 163 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~ 163 (310)
+...+..++.++..++
T Consensus 304 l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 304 IKDKLKELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 90
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=74.44 E-value=72 Score=31.22 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFD-NFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfe-N~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
..|.+-+.||.+||.++.|++-||- .=.-|.+-++ +.+-|. +=|+.|=.|||.+.--|
T Consensus 82 ~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL--ALKEAR-kEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL--ALKEAR-KEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHhhh
Confidence 3444555666666666667766663 2333443322 122222 12445555666655444
No 91
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=74.29 E-value=34 Score=29.09 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=15.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
++......++.+...|+.++..+..++..+
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~ 34 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKA 34 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555443
No 92
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.22 E-value=35 Score=30.00 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLER---KVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~---el~~Le~el~elkdk~lR~~ADfeN 189 (310)
++.+|...++++..|+. -+++|++++++|+..+....+++++
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 3445555555555555544444443
No 93
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.07 E-value=36 Score=29.14 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=25.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.-..+...+..+..++..|...+..|+.++++++.++.-..++..++.+...
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555444444444444444433
No 94
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=73.83 E-value=22 Score=28.17 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 141 ~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
+.+|+.++...+..+...++.|+..+..+..+....++...|+.+..+|.-++
T Consensus 23 s~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s 75 (78)
T COG4238 23 SNAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQS 75 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999986554
No 95
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.30 E-value=51 Score=32.35 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
+...+..+...|.+.++.++++++++..++....||.+-
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666543
No 96
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.23 E-value=57 Score=37.03 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
.+++.++..++++++.++.+|+.|+... .++..+.+++++-..-+.--..++....-..++.++-.+.+.++-.-+
T Consensus 680 ~~~~~~~~~~q~el~~le~eL~~le~~~----~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~ 755 (1174)
T KOG0933|consen 680 KQAQKELRAIQKELEALERELKSLEAQS----QKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQ 755 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666555442 233444455554443333333333333444444444444444444444
Q ss_pred ch
Q 021637 226 QI 227 (310)
Q Consensus 226 ~~ 227 (310)
.+
T Consensus 756 ~I 757 (1174)
T KOG0933|consen 756 QI 757 (1174)
T ss_pred HH
Confidence 33
No 97
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.56 E-value=47 Score=37.82 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=24.6
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
....+++.+..+..+...+..++..++.++..+..++.++....+.+.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~ 425 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444544555555555555555555555555544444443
No 98
>PRK14150 heat shock protein GrpE; Provisional
Probab=72.54 E-value=31 Score=31.48 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVM 210 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~i 210 (310)
.+.+.+++..|++++.+++ +++.|.-.|+..|.+++++......-
T Consensus 36 ~~~~~~~i~~l~~~l~~~~-------~~~kd~~lR~~AefeN~rkR~~kE~~ 80 (193)
T PRK14150 36 LDEADARIAELEAQLAEAQ-------AEERDSVLRARAEVENIRRRAEQDVE 80 (193)
T ss_pred hhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 36666667777777777766665543
No 99
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=72.53 E-value=17 Score=33.13 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEEL--SAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el--~elkdk~lR~~ADfeN~RKRt~k 196 (310)
..+++.+.+++++...++.+|..|..-+ .++.+....+..+..||++|+.+
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 24455555555666666666543
No 100
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.36 E-value=33 Score=35.59 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=38.5
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
.+.+++.++..+..+++.|+++.+.|++...... .|++.-+++.+.++.++++++...
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id---~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSID---QQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455666677777777777777777766655544 355566777888888877766543
No 101
>PRK02224 chromosome segregation protein; Provisional
Probab=72.34 E-value=84 Score=34.18 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=8.0
Q ss_pred CCCCCCCCCCc
Q 021637 263 VGNPFDPLVKP 273 (310)
Q Consensus 263 vGe~FDPn~HE 273 (310)
.|.+|++.-++
T Consensus 457 C~r~~~~~~~~ 467 (880)
T PRK02224 457 CGQPVEGSPHV 467 (880)
T ss_pred CCCcCCCcchh
Confidence 68889876653
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.26 E-value=1e+02 Score=30.20 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
...+..++.+...|.+.+..+..-+..+.+++..+..++.|+++....
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555555666666666666666677777777788888887776554
No 103
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=72.22 E-value=68 Score=32.72 Aligned_cols=133 Identities=13% Similarity=0.165 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHh
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEK 236 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~ 236 (310)
++...|+.+++.++++...-+.+|...+++...|.-+....++...+.-++.=-+.|.-..+-|-..-.|+...
T Consensus 177 eq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~hldl~------ 250 (472)
T KOG2856|consen 177 EQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQRHLDLS------ 250 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Confidence 45678899999999999999999999999999999999888887666555433333322222222222222111
Q ss_pred hhhHHHHHHHH-------------HHHHHHhCCCeeec--CCCCCCCCCCCceee-eeeCCCCCCCCcee-EEeccc
Q 021637 237 INNSYQSIYKQ-------------LVEILGSLGVVPVE--TVGNPFDPLVKPRVG-LKISRVLDEFSQIL-NQVCSG 296 (310)
Q Consensus 237 l~~Gv~mi~kq-------------L~~vL~k~GVe~I~--~vGe~FDPn~HEAV~-~~~s~d~ee~gtVv-~V~qkG 296 (310)
-+.+|..||.+ |.-+-..||+-..- |--+.+.|.+.--|. ...+....+ |.++ .+.|.|
T Consensus 251 ~~~~~~~ly~eleqsIr~Ad~eeDLrww~s~hG~~mamnWPqF~E~s~d~~rtia~r~ks~k~~~-gv~lT~In~t~ 326 (472)
T KOG2856|consen 251 RNSSYSGLYRELEQSIRAADAEEDLRWWRSNHGPGMAMNWPQFEEWSPDLQRTIAKREKSTKAAD-GVTLTRINQTG 326 (472)
T ss_pred hhcchHHHHHHHHHHHhccchHHHHHHHHhcCCCccccCCchHhhcChhhhhHHHhccCCCCCCC-CceeeeeccCC
Confidence 01223333333 33344567776543 455667888844444 344433333 4443 344444
No 104
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.96 E-value=45 Score=35.01 Aligned_cols=54 Identities=20% Similarity=0.444 Sum_probs=39.6
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
...++...+..++++...+...+..|.+.-...++++.+....+.+.+|++++-
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666667777777777777777778888888888888888887765
No 105
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.80 E-value=28 Score=33.11 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
-..+++.++.++.++..++.+++-+++++++..+.|+++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777766654
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.62 E-value=33 Score=33.33 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=10.8
Q ss_pred HHHhhhhhhHHHHHHhch
Q 021637 210 MERLLQVLDNFERAKTQI 227 (310)
Q Consensus 210 ikdLLpVlDnLERAl~~~ 227 (310)
..+++.-+.++++.+...
T Consensus 253 k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 253 KQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566667777776543
No 107
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.58 E-value=79 Score=28.61 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
...+..+|..|+++..+++.+...+.+..+...++....+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~ 163 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE 163 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777666555443
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.93 E-value=36 Score=34.90 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=17.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
..+...+++++.+++.++..++.++.+..+.+..+.++..-
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 33344444444444444444444444444444433333333
No 109
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=70.64 E-value=1.3e+02 Score=31.80 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=45.4
Q ss_pred ChhhHHHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 141 DDTKAAEIEALLKSFEDE-------KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGE 208 (310)
Q Consensus 141 ~~~~~~e~e~~l~~~~~E-------~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~ 208 (310)
++.++.+.+..++.+... +....+++.+|++++...++++..+..++++-+++++++..++++--..+
T Consensus 189 ~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D 263 (555)
T TIGR03545 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQND 263 (555)
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhH
Confidence 355666666666666553 33455677777777777777787888888888888777776665443333
No 110
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.58 E-value=49 Score=36.30 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=12.2
Q ss_pred CCCCceeeeeeCCCCCCCCceeEEeccc
Q 021637 269 PLVKPRVGLKISRVLDEFSQILNQVCSG 296 (310)
Q Consensus 269 Pn~HEAV~~~~s~d~ee~gtVv~V~qkG 296 (310)
+.....|...... .. |+|+.+-.+|
T Consensus 637 ~~~Gd~V~v~~~~--~~-g~v~~i~~~~ 661 (782)
T PRK00409 637 LKVGDEVKYLSLG--QK-GEVLSIPDDK 661 (782)
T ss_pred CCCCCEEEEccCC--ce-EEEEEEcCCC
Confidence 4445555543211 23 7777775433
No 111
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.55 E-value=74 Score=28.79 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=11.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELS 174 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~ 174 (310)
+..+..+++++..++.++..|++++.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 112
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=70.53 E-value=86 Score=28.64 Aligned_cols=61 Identities=25% Similarity=0.171 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDN 219 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDn 219 (310)
...+..+++..+...+.+.++.++-...|+..|.+--++.-.....+.-++.+.++.+-++
T Consensus 135 ~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~ 195 (201)
T cd07622 135 KQQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTN 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333333333333334444444433333
No 113
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.33 E-value=50 Score=29.06 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQV 216 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpV 216 (310)
...+..+..+...++.+|...++.+..+++.+.+...+-+.+++...+-+.+.-.+..-.++.|+.-.
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~ 150 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKT 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 34455555566666667777777777777777777777777776666655555444444444443333
No 114
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.18 E-value=49 Score=25.68 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
.++|..+..+-+.+..|+.++..|+++...+++...-+..+.+.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666665554444444443333
No 115
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.06 E-value=1.3e+02 Score=34.23 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 172 ELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 172 el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
++.+++.++.-.+|+.+---+|..+|..++. .+.+.....|-+..|++|+|.
T Consensus 266 qlqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYKEEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655555555555443 455566666777777777764
No 116
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.84 E-value=79 Score=32.58 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARIL--------RISADFDNFRKRTEKERLS 200 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~l--------R~~ADfeN~RKRt~kE~e~ 200 (310)
.-...|..+++.|+++++..++++. ++.-.|---|++++|.++.
T Consensus 240 ~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er 291 (439)
T KOG2911|consen 240 QARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLER 291 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHH
Confidence 3334444444455555544444443 2233333345555555543
No 117
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.78 E-value=22 Score=33.85 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
....++...++..++|+.+|..++..|+.++.+.++++.|+.-+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777888888888888888877777776544
No 118
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.57 E-value=87 Score=27.92 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhhhhHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVM---------ERLLQVLDNFERAK 224 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~i---------kdLLpVlDnLERAl 224 (310)
.+..++...-.++..|+......+.++.-...+|.+| ++.++.++...|..--+ +.|--=-|.|+|-+
T Consensus 38 evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y---sE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl 114 (159)
T PF05384_consen 38 EVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY---SEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRL 114 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444333443333334444443 44555554444433222 34445556666666
Q ss_pred hchh
Q 021637 225 TQIK 228 (310)
Q Consensus 225 ~~~~ 228 (310)
..+.
T Consensus 115 ~~l~ 118 (159)
T PF05384_consen 115 RNLE 118 (159)
T ss_pred HHHH
Confidence 5543
No 119
>PRK09039 hypothetical protein; Validated
Probab=68.19 E-value=80 Score=31.18 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.++.++..|+.++..|+.+|+..+.+..-.++.++.+++++
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433334444444333
No 120
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=67.90 E-value=26 Score=28.28 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=40.1
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
.++.++.+++..+..+.+.+...+..++..+...+++-.|+..-.+|.
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 588888888888888888888888888888888888888877776664
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.83 E-value=1e+02 Score=29.05 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 021637 159 KIDLERKVVNLSEELSAERARILRISAD---FDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQ 226 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~AD---feN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~ 226 (310)
+.++.+++..|..|-...-+.+.-+.+| ++|.-+.+..|+.+....+ ..+..++.++.|.+++.+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554 5667777788888755444 66668888888888888765
No 122
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.81 E-value=87 Score=28.93 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
-.++-.+...++.+...|.+++..+.+..-+++++++.+++|+..=
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3333344445566677788888899999999999999999998754
No 123
>PRK14161 heat shock protein GrpE; Provisional
Probab=67.61 E-value=76 Score=28.68 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEEL----SAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el----~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
+..+..++.++..|++++.+++.++ +++..--.|...|.++.++......-.
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~ 73 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAK 73 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433332 223333356666677777666555443
No 124
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=67.43 E-value=1e+02 Score=28.30 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCCeeec
Q 021637 204 NAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVE 261 (310)
Q Consensus 204 ~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~ 261 (310)
...++.+..+...+++|+..+..+... ......+.+++.--+.|.++.....|..|+
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a-~~~~ev~~aLk~g~~aLK~~~k~~~idkVd 133 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENM-HLHKIAVNALSYAANTHKKLNNEINTQKVE 133 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344555566667777777766544322 112345566666666666666666665554
No 125
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.76 E-value=1.1e+02 Score=28.43 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=24.3
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
.++.++..+-..+..++..|..+++.|+...+.++..+.....+...+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444444444444444443
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.51 E-value=1e+02 Score=28.08 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHH
Q 021637 128 ETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL---RISADFDNFRKRTE---KERLSL 201 (310)
Q Consensus 128 ~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l---R~~ADfeN~RKRt~---kE~e~~ 201 (310)
++|++.++.+.. -..+....+..+..+..|+..|.+-|..++++..+++.++. +-...+.|.+.|.. +++...
T Consensus 27 ~lIksLKeei~e-mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 27 ELIKSLKEEIAE-MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555542 11222333444555555555665555555555555554433 33344445555542 222222
Q ss_pred HH------HHHHHHHHHhhhhhhHHHHHHhchhhcc--------hhhHhhhhHHHHHHHHHHHHHHhCCCee
Q 021637 202 VT------NAQGEVMERLLQVLDNFERAKTQIKVQT--------EGEEKINNSYQSIYKQLVEILGSLGVVP 259 (310)
Q Consensus 202 ~~------~A~~~~ikdLLpVlDnLERAl~~~~~~~--------e~~~~l~~Gv~mi~kqL~~vL~k~GVe~ 259 (310)
+. .-..++-.+-=.+.+.|+.++..+...+ .....+...++....||..+|...++.+
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 11 1222233333344555555554443211 1233455556666677888888777654
No 127
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=66.46 E-value=18 Score=27.45 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=24.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLS-EELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le-~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+.+++..+.++++-+..|+-++..+- ..-..++.++...+.++.++++-+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555554444443 233345555555555555555443
No 128
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=66.34 E-value=96 Score=29.23 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
.++..++.++.+++.+...+..+|+++.+.+.+|+......
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~e 199 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKE 199 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888999999999999999999999999988765443
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.97 E-value=89 Score=27.07 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=21.5
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
++.+++......+.++.+|..++..|+.+++.+..++..+.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555544444
No 130
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.92 E-value=53 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.++|+.++..-+.+.-|+-+|++|+++...+.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 131
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.77 E-value=24 Score=26.06 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELS 174 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~ 174 (310)
+.+++..+..++.++..|..++..|+.++.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333333333
No 132
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.60 E-value=84 Score=34.52 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=5.2
Q ss_pred hhhhhhHHHHHHH
Q 021637 152 LKSFEDEKIDLER 164 (310)
Q Consensus 152 l~~~~~E~~~L~~ 164 (310)
+..++.+...+++
T Consensus 522 i~~l~~~~~~~e~ 534 (782)
T PRK00409 522 IASLEELERELEQ 534 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 133
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.52 E-value=58 Score=30.91 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 121 APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 121 ~~~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
...+.|-..+.+=++=+ ..++.++|+++.....++..|+.+++.|++..-.|-+|...++
T Consensus 75 ~~~~siLpIVtsQRDRF----R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRF----RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred CCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666555555 3588999999999999999999999999999998888866553
No 134
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.43 E-value=33 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
|+..|++++++.+.+++.+|.+...+..|
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444334444444443333333
No 135
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.06 E-value=1.3e+02 Score=30.62 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCceee
Q 021637 262 TVGNPFDPLVKPRVG 276 (310)
Q Consensus 262 ~vGe~FDPn~HEAV~ 276 (310)
..|..|+.. |..++
T Consensus 289 ~C~~~~~~~-~~~~~ 302 (562)
T PHA02562 289 TCTQQISEG-PDRIT 302 (562)
T ss_pred CCCCcCCCc-HHHHH
Confidence 368888776 54443
No 136
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.17 E-value=27 Score=26.09 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 021637 165 KVVNLSEE 172 (310)
Q Consensus 165 el~~Le~e 172 (310)
++..++++
T Consensus 32 ~i~~l~~e 39 (80)
T PF04977_consen 32 EIEELKKE 39 (80)
T ss_pred HHHHHHHH
Confidence 33333333
No 137
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=64.05 E-value=48 Score=28.50 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=18.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+.++..+++++.+++.++..+.++++.++. |+..+.++.++
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~---r~~~e~~~~~~ 57 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRK---RLEKEKEEAKK 57 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334444444555555555544444444443 33444444444
No 138
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.79 E-value=51 Score=24.95 Aligned_cols=43 Identities=12% Similarity=0.308 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
.+..|+...+...-.++.++.+...+..-+.++.++++++++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555666666655543
No 139
>PRK03918 chromosome segregation protein; Provisional
Probab=63.57 E-value=2e+02 Score=31.15 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
..++..++.++..++.++.+++.++
T Consensus 625 ~~~l~~~~~~i~~l~~~i~~l~~~~ 649 (880)
T PRK03918 625 EEELDKAFEELAETEKRLEELRKEL 649 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 140
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.43 E-value=76 Score=28.46 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=26.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+.+++.++..++.++..++.+|.++.+-+..++|.+.-++..|.-...+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555666665555555444433
No 141
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.24 E-value=73 Score=29.90 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
++.|.+.+.+++..|++++.+...++..++.+.++++|..+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777777777766543
No 142
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=63.12 E-value=1e+02 Score=26.70 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
.+|..+....+.++.|++++...+..++.-...+..+.+...+..+...++..+
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444555555555555555555555555555555555444444443
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.07 E-value=2.1e+02 Score=31.35 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHhhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKID-------LERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~-------L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
.+++.-+..+..+++. ++++++.+++..+.+.+||.++..--+++.+|+++=
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 444444444444444555555555555555554443
No 144
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.73 E-value=28 Score=28.20 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=12.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
++..++.++.++..+..++..+++++.+++.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444333
No 145
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.70 E-value=96 Score=26.33 Aligned_cols=39 Identities=10% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
+-.++.++..++.++.+..+.+..+...|++..++...-
T Consensus 50 nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 50 NLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555556666555544443
No 146
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.48 E-value=2e+02 Score=32.45 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL--V 202 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~--~ 202 (310)
.....-+.|++-..- -+....+++.++-.+++....++.++..|+.-+.-+.+.+....-+.+|.+-|+.++...+ +
T Consensus 82 vstqetriyRrdv~l-lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNL-LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred hhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 334555667665431 1223445666677777777777778888888888888888888899999999998887764 3
Q ss_pred HHHHHHHHHHhh---hhhhHHHHHHh
Q 021637 203 TNAQGEVMERLL---QVLDNFERAKT 225 (310)
Q Consensus 203 ~~A~~~~ikdLL---pVlDnLERAl~ 225 (310)
..-+..+.++|= .++.+|+.-++
T Consensus 161 ~~eIf~~~~~L~nk~~~lt~~~~q~~ 186 (1265)
T KOG0976|consen 161 AHDIFMIGEDLHDKNEELNEFNMEFQ 186 (1265)
T ss_pred hHHHHHHHHHHhhhhhHHhHHHHHHH
Confidence 444444444443 45555555443
No 147
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=62.43 E-value=1.5e+02 Score=28.49 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 128 ETLQSYKEALASNDDTKAAEIEAL--LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (310)
Q Consensus 128 ~~~r~y~ea~~~~~~~~~~e~e~~--l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A 205 (310)
.+-+.|..+-...+.+...+..+. -.-..++...++.++...+.+....+++|.....+...|+.+..++....-+.-
T Consensus 137 ~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~ 216 (258)
T cd07679 137 AAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQC 216 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455667666543333322211110 112345677889999999999999999999999999999999999987765544
Q ss_pred HH------HHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHH
Q 021637 206 QG------EVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEI 251 (310)
Q Consensus 206 ~~------~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~v 251 (310)
.+ .|++++|-.+-+ +++.. -...|..||..|..+
T Consensus 217 Q~~E~eRi~F~K~~l~~~~~------~l~i~------~~~~~~~i~~~L~~~ 256 (258)
T cd07679 217 QQFEEKRLRFFREVLLEVQK------HLDLS------NVASYKNIYRELEQS 256 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH------Hccch------hhhhHHHHHHHHHhh
Confidence 33 455555443322 22111 123566777777654
No 148
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.31 E-value=1.1e+02 Score=28.56 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELS----AERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 141 ~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~----elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
++.+++.++.++..++.++..|++++..++.++. ++..--.|...|.+.+++......-
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~ 114 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVL 114 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444554555555555555555554443322 2333334555555555555544433
No 149
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.30 E-value=23 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 166 VVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 166 l~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
+..+++++++++.+..++..+.+++
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 150
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=62.04 E-value=51 Score=28.05 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARI-LRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~-lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
..+....+.+.++.+.+.+..+..+.. ..+.+..++.+....++.+.....+...+-..-
T Consensus 53 ~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~ 113 (156)
T PRK05759 53 ELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433322 233344444555555555555555444444333
No 151
>PRK04863 mukB cell division protein MukB; Provisional
Probab=61.44 E-value=2.4e+02 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
.+++..++.++.++..++..+..+.++++.
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLqe 397 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433344444444444444444433
No 152
>PRK10780 periplasmic chaperone; Provisional
Probab=61.16 E-value=1.1e+02 Score=26.62 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=7.5
Q ss_pred HHHHHHHHHhCCCeee
Q 021637 245 YKQLVEILGSLGVVPV 260 (310)
Q Consensus 245 ~kqL~~vL~k~GVe~I 260 (310)
.+.+.++=+..|..-|
T Consensus 126 ~~ai~~vak~~gy~~V 141 (165)
T PRK10780 126 QTAVKSVANKQGYDLV 141 (165)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 3333344455665544
No 153
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.13 E-value=37 Score=33.20 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=18.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
.+..++.++...+.++...+.++.++.+++..+..+|+.
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555544444444444443
No 154
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=61.00 E-value=48 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 187 FDNFRKRTEKERLSLVTNAQGEVM 210 (310)
Q Consensus 187 feN~RKRt~kE~e~~~~~A~~~~i 210 (310)
.++......++.+..+..+...+-
T Consensus 102 ~~~~~~~A~~e~~~~~~~a~~~i~ 125 (174)
T PRK07352 102 RAEIEKQAIEDMARLKQTAAADLS 125 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.98 E-value=74 Score=28.52 Aligned_cols=11 Identities=0% Similarity=0.253 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 021637 178 ARILRISADFD 188 (310)
Q Consensus 178 dk~lR~~ADfe 188 (310)
+++.++.+|-.
T Consensus 165 ~k~~~l~~En~ 175 (194)
T PF08614_consen 165 EKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 156
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.95 E-value=1.3e+02 Score=27.22 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=24.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
....++.++..|+.++..|+.++.+++.++..+...++..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555444443
No 157
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=60.69 E-value=85 Score=32.34 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCCccCCchHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 021637 116 SDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLER-------------KVVNLSEELSAERARILR 182 (310)
Q Consensus 116 ~~~~~~~~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~-------------el~~Le~el~elkdk~lR 182 (310)
..+++-....|..+|+-....+..+.+..++.++.+...++.|+..++. .+...-....++-..+.|
T Consensus 117 ~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~ 196 (478)
T PF11855_consen 117 FVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRR 196 (478)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777777777788889999999999999999887753 222233333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021637 183 ISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220 (310)
Q Consensus 183 ~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnL 220 (310)
...+|+.+-+.+ ++.-..-..+...++..++.-.|.|
T Consensus 197 V~~~~r~l~r~l-r~~i~~~~~~~G~vL~~~~~~~d~l 233 (478)
T PF11855_consen 197 VEDNFRELDRAL-RERIIDWDGSRGEVLDEYFDGYDAL 233 (478)
T ss_pred HHHHHHHHHHHH-HHHHhhccccHHHHHHHHHHhHHHH
Confidence 444444443333 2233334556677777776666654
No 158
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.46 E-value=2.2e+02 Score=29.75 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHhc
Q 021637 173 LSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL-QVLDNFERAKTQ 226 (310)
Q Consensus 173 l~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLL-pVlDnLERAl~~ 226 (310)
+..+.+.-.++..+|+|+=.++=.++........+.-+..|| |+-+.|+.--..
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~ 155 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQ 155 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444445677777777777766555544444444444444 555555554433
No 159
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.91 E-value=2.7e+02 Score=32.65 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=36.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
+...+...+..+.++.+..|++.++..+.-+.+-.-.-.+-|.|.++-++++.+.-.+. .+.|.-+++|++..
T Consensus 1647 ~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a--~~kl~~l~dLe~~y 1719 (1758)
T KOG0994|consen 1647 KTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQA--NEKLDRLKDLELEY 1719 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33333333344444445555544443333333333445667777777666665543332 34555666666554
No 160
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.83 E-value=1.4e+02 Score=27.30 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=29.5
Q ss_pred cCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 138 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 138 ~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
..|++.-..+.=.+....+.....|+.++..++..+..++.++..+...++.++.+
T Consensus 80 ~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 80 SKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544433333223344444555566666666666666666666666666666443
No 161
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=59.79 E-value=2.2e+02 Score=31.94 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDL------ERKVVNLSEELSAERARILRISAD------------------------FDNFRKRT 194 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L------~~el~~Le~el~elkdk~lR~~AD------------------------feN~RKRt 194 (310)
++..+..+...++.+.+- .++|+.|.+++.+.-+.|+|.+|+ ++++=.|+
T Consensus 498 ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~i 577 (851)
T TIGR02302 498 LSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQI 577 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHH
Confidence 444444555555443322 468889999999999999888774 34444455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 195 EKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 195 ~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
++-.+.-...+.+.++.+|=.+++||..+-
T Consensus 578 eela~~G~~~~A~qlL~qlq~mmenlq~~q 607 (851)
T TIGR02302 578 ENLARSGDRDQAKQLLSQLQQMMNNLQMGQ 607 (851)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccC
Confidence 555555566677778888888889988754
No 162
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.76 E-value=63 Score=33.89 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+..++++..++.+.+..|.+...+.++++.+....+.++++++.+
T Consensus 392 leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k 436 (569)
T PRK04778 392 LEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444433
No 163
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.67 E-value=1.1e+02 Score=32.08 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
..+++..+..+.++++.++.+..++.+.+..++..-.++....+.|++.+.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554444444445444444444444444444444444444444433
No 164
>PRK14139 heat shock protein GrpE; Provisional
Probab=59.60 E-value=1.4e+02 Score=27.22 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
+..++.++..++.++.+++.++--+.++.+.++. |...|.++.++......-
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rK---R~~kE~e~~~~~a~~~~~ 85 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRR---RAQEDVAKAHKFAIESFA 85 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777766666666665554 444555666655544443
No 165
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=59.46 E-value=25 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 167 VNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 167 ~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
..|+.++..++.++.++++.|.-|+|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566677777777775
No 166
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.45 E-value=2.1e+02 Score=33.21 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=37.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~ 201 (310)
.+++..+..+..++..+..++..++.++..+...+.+++++++.++.+...+...+
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666677777777777777777888877776665554443
No 167
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.44 E-value=52 Score=29.57 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
..++.+...|+.++.+++.++..+.++.+.+.++..
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777776666553
No 168
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=59.42 E-value=1.3e+02 Score=26.86 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
....+...|++.+.+-..+.-.-+++.....+.+.+....+... +.......+.++.+..|....++.......
T Consensus 80 eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~------e~~~~~aea~~~I~~~k~~a~~~l~~~a~~ 153 (181)
T PRK13454 80 KAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADA------EIAAKAAESEKRIAEIRAGALESVEEVAKD 153 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhH
Q 021637 205 AQGEVMERLLQVLDN 219 (310)
Q Consensus 205 A~~~~ikdLLpVlDn 219 (310)
....++..|+.-+|+
T Consensus 154 lA~~i~~kL~~~~~~ 168 (181)
T PRK13454 154 TAEALVAALGGKADA 168 (181)
T ss_pred HHHHHHHHHcCCCCH
No 169
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.37 E-value=60 Score=24.55 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=21.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
..+|.........++.+|.+.+++..++...+.++.-+++.+|
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444555555555555555555555555555544
No 170
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=59.23 E-value=1.6e+02 Score=27.78 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+..++.....++.++..++.++...+.++..+..+++.+++
T Consensus 96 ~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~ 136 (334)
T TIGR00998 96 TKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVP 136 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333344444444444444444444444444444443
No 171
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.93 E-value=2.6e+02 Score=30.00 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCe-eecCCCCCCCCCC
Q 021637 238 NNSYQSIYKQLVEILGSLGVV-PVETVGNPFDPLV 271 (310)
Q Consensus 238 ~~Gv~mi~kqL~~vL~k~GVe-~I~~vGe~FDPn~ 271 (310)
.+.++-..-++.....+.++. ....+|.+|+|+-
T Consensus 373 f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~ 407 (581)
T KOG0995|consen 373 FKELEKKFIDLNSLIRRIKLGIAENSKNLERNPER 407 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Confidence 333444444445555666555 3345666666653
No 172
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.76 E-value=1e+02 Score=28.91 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
+....|+....+.+....-...+.++..+..++.++..+.+.+..|+..+..+..++.-+.+-.+-++-|..-..-...-
T Consensus 73 ~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v 152 (225)
T COG1842 73 EKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKV 152 (225)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHH-HHHHHHHHHHHHhCCC
Q 021637 204 NAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSY-QSIYKQLVEILGSLGV 257 (310)
Q Consensus 204 ~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv-~mi~kqL~~vL~k~GV 257 (310)
.-.-..+.. =...+.|+|.-.-+... +........+ ......+.+=|.+.|+
T Consensus 153 ~~~~~~~s~-~sa~~~fer~e~kiee~-ea~a~~~~el~~~~~~dl~~e~a~~~~ 205 (225)
T COG1842 153 NRSLGGGSS-SSAMAAFERMEEKIEER-EARAEAAAELAEGSGDDLDKEFAQAGA 205 (225)
T ss_pred HHHhcCCCc-hhhHHHHHHHHHHHHHH-HHHHHHhHHhhccCcccHHHHHHHhcc
No 173
>PRK04406 hypothetical protein; Provisional
Probab=58.70 E-value=85 Score=24.49 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
+-+.+|+.++.-.+.-+++|.+-+.+.+.+.+-++++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555554444444444433
No 174
>PRK10869 recombination and repair protein; Provisional
Probab=58.65 E-value=1.1e+02 Score=32.16 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
.+..|+++++.++++|..+.......|+...+..+
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~ 376 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELA 376 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444444444
No 175
>PRK14158 heat shock protein GrpE; Provisional
Probab=58.19 E-value=1.4e+02 Score=27.35 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=28.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
.+..++.++..++.++.+++.++.-+.++.+.++. |...|.++.++......
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~Rk---R~~kE~e~~~~~a~~~~ 92 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRK---RVQKEKEELLKYGNESL 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666555555555554 44445555555444433
No 176
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=58.09 E-value=39 Score=29.42 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
..+|+.+-..|..+++.|+..+-|+.-|.++|+-+.++-..
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666666777777788888888888899999888766444
No 177
>PRK14154 heat shock protein GrpE; Provisional
Probab=57.95 E-value=1.1e+02 Score=28.47 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=25.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.+++++..+++++.+++.++.-+.++.+.++.+.. .|.+++++...
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~---kE~e~~~~~a~ 101 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIE---REKADIIKFGS 101 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33444555566666666666666666655554444 44444444444
No 178
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.69 E-value=35 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=12.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
..++..++.++..++++...|+++++.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444433
No 179
>PRK14148 heat shock protein GrpE; Provisional
Probab=57.66 E-value=1.4e+02 Score=27.40 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
+..++.++..++.+..+++.++.-+.++.+.++ .|...|.++.++........
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r---KR~~rE~e~~~~~a~~~~~~ 94 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIR---KRAERDVSNARKFGIEKFAK 94 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666655555555555555 45555666666655544443
No 180
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.20 E-value=1.6e+02 Score=27.19 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERA 223 (310)
++..++..+..++.....++.++..|+.++......+..+.+-.+.+-.|...=-..+ ..+..-+++.---++..++-
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i--~~L~~~lkeaE~Rae~aE~~ 198 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKI--RDLEEKLKEAENRAEFAERR 198 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666666666665555555444443333221111111 11111112222222222222
Q ss_pred Hhchhhc----chhhHhhhhHHHHHHHHHHHHHHhCC
Q 021637 224 KTQIKVQ----TEGEEKINNSYQSIYKQLVEILGSLG 256 (310)
Q Consensus 224 l~~~~~~----~e~~~~l~~Gv~mi~kqL~~vL~k~G 256 (310)
+..+... ......+..-+..+.+.|..+|..+|
T Consensus 199 v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 199 VKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2211111 01233455566777888888887765
No 181
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=57.10 E-value=74 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
-.++..+|..+++|+..|.+-|...+++..+||.++
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356677788888888888888888888888888664
No 182
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=56.41 E-value=91 Score=29.05 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERAR-----ILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk-----~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
......+..++..|++++..|++++....+. ..-+....++.+....++-..+.+.+..
T Consensus 36 ~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~ 99 (212)
T COG3599 36 IDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASA 99 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667777778888888887777664 5566666677777777776666665544
No 183
>PLN02372 violaxanthin de-epoxidase
Probab=56.40 E-value=1.2e+02 Score=31.26 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 021637 180 ILRISADFDNFR 191 (310)
Q Consensus 180 ~lR~~ADfeN~R 191 (310)
+..++.|.+||-
T Consensus 412 ~~~l~~~~~~f~ 423 (455)
T PLN02372 412 LKELEQDEENFL 423 (455)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 184
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.31 E-value=2.6e+02 Score=29.26 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=25.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
+..+..++..+..++.+++..++..+....-.++.+++.+.++..+.+++-..+.+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile 124 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444455555555555555544443333
No 185
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.96 E-value=1e+02 Score=24.37 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLD 218 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlD 218 (310)
.++|+.++..-+-+.-|+-+|++|+++...+.....-++--.++++++-+.-++ ...+-+.-++.||--+|
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~--e~~~WQerlrsLLGkme 77 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE--EQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 344444544444444455555555555444444444444444444443322222 22344445555554443
No 186
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.95 E-value=2.9e+02 Score=31.67 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=23.2
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
....+.+.+.+.....+.+++.+|..+++++.++.+.|.
T Consensus 434 e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 434 ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555666666666666666666666665
No 187
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.92 E-value=83 Score=23.87 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
++...+.++.++++.+..++.+..+...+..|..+++.+
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~ 45 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEK 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444455555555543
No 188
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=55.78 E-value=34 Score=29.80 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
|++-..+..+++.|.+++..+.-+++.|+.+|.++
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445555555555443
No 189
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=55.68 E-value=1.9e+02 Score=27.48 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=26.1
Q ss_pred HHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCCee-ecCCCCCCCCCCC
Q 021637 211 ERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVP-VETVGNPFDPLVK 272 (310)
Q Consensus 211 kdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~-I~~vGe~FDPn~H 272 (310)
+++=.+-|.+++.++-++.. .+.+-+-++.+++-|..+|-=+=+-. +-.+|-+|=+.+|
T Consensus 120 ~ei~k~r~e~~~ml~evK~~---~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 120 NEIKKVREENKSMLQEVKQS---HEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 34444556666665544322 22222333333333333332222111 2346777777777
No 190
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=55.27 E-value=50 Score=31.93 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
.+.++.....++...+.+++...+.+.+..++..+++.|...
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666777777777777777777777777777643
No 191
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=55.23 E-value=87 Score=29.72 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHh
Q 021637 205 AQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 205 A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k 254 (310)
-+=.++-.+|-+.|+-.|--.|+. .+++-||..|...+....++
T Consensus 191 ~VCeVCGA~Ls~~D~d~RladH~~------GK~HlGy~~IR~~l~el~e~ 234 (254)
T PF03194_consen 191 EVCEVCGAFLSVGDNDRRLADHFG------GKQHLGYAKIREKLKELKEK 234 (254)
T ss_pred cchhhhhhHHhccchHHHHHHHhc------cchhhhHHHHHHHHHHHHHH
Confidence 344677799999999999888874 35788988886665554443
No 192
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.12 E-value=1.7e+02 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHh-CCCeee
Q 021637 240 SYQSIYKQLVEILGS-LGVVPV 260 (310)
Q Consensus 240 Gv~mi~kqL~~vL~k-~GVe~I 260 (310)
-+.....++..-|.. +.|+.+
T Consensus 141 ~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 141 QLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHhCceee
Confidence 344444444444433 355444
No 193
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=54.92 E-value=1.9e+02 Score=27.39 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=34.9
Q ss_pred HHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCCeee
Q 021637 209 VMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPV 260 (310)
Q Consensus 209 ~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I 260 (310)
++..-|.-+|+=-|.-.|+. .+++-||-|+...+...|+++|+...
T Consensus 190 iCgayLsrlDtdrrladHf~------GklHlGy~~~R~dl~~llk~~~~sr~ 235 (258)
T COG5200 190 ICGAYLSRLDTDRRLADHFN------GKLHLGYLLVRSDLADLLKKFGISRV 235 (258)
T ss_pred hhhhHHHhcchhhHHHHHhc------cchhhhHHHHHHHHHHHHHHhccchh
Confidence 45556666676666655552 36889999999999999999998874
No 194
>PRK14157 heat shock protein GrpE; Provisional
Probab=54.48 E-value=1.9e+02 Score=27.27 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
.++.++..++.|+.+++.++.-+..+...++. |...|.++++++.....-
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRK---R~~rE~e~~~~~a~~~~~ 130 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRN---RTQKEQDRFRQHGIIDVL 130 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777766666664 555566666665544433
No 195
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.43 E-value=2.4e+02 Score=34.43 Aligned_cols=54 Identities=26% Similarity=0.451 Sum_probs=38.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
..+.+++.....++.++.+|+.++.+++.++....++-+|++.++..+|.-.++
T Consensus 1512 k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er 1565 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIER 1565 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 356666777777777888888888888888888888888866665555543333
No 196
>PRK14155 heat shock protein GrpE; Provisional
Probab=54.40 E-value=1.1e+02 Score=28.48 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=25.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
+.++..++.++.+++.++.-+.++.+.++. |...|.+++++......
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RK---R~~kE~e~~~~~a~~~~ 65 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKR---RAEREMNDARAYAIQKF 65 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 334455555666666666666556555554 44445555555544443
No 197
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.86 E-value=3e+02 Score=30.97 Aligned_cols=62 Identities=8% Similarity=0.249 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKRTE------------KERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKRt~------------kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
.++..|+++|+++..+++++.-|-+-+--++. +...++.....+-++..|=+-+|+|+.-..
T Consensus 486 sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~e 559 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETE 559 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777655554433332 222222233334444455566777766544
No 198
>PRK14151 heat shock protein GrpE; Provisional
Probab=53.84 E-value=1.4e+02 Score=26.86 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=28.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
.+++++..++.++.+++.++.-+.++.+.++ .|...|.+++++......-
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~r---kR~~kE~e~~~~~a~~~~~ 73 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVR---RRAEQDVEKAHKFALEKFA 73 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666655555 4555566666665544433
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.81 E-value=2.2e+02 Score=29.70 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhCCCe
Q 021637 241 YQSIYKQLVEILGSLGVV 258 (310)
Q Consensus 241 v~mi~kqL~~vL~k~GVe 258 (310)
...+.+.+...|..+|+.
T Consensus 377 a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 377 AERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 345566667777777765
No 200
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.76 E-value=35 Score=35.46 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEEL 173 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el 173 (310)
+.+.+....+|+++|+.|+.++
T Consensus 71 LteqQ~kasELEKqLaaLrqEl 92 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 201
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=53.75 E-value=2.1e+02 Score=27.37 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
.+++..++.++......+.+.+++|.-...++..++.+..++....-+.-..
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~ 218 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566778888888888888999999999999999988888887776655544
No 202
>PRK14147 heat shock protein GrpE; Provisional
Probab=53.68 E-value=1.3e+02 Score=26.99 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=24.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
++..++.++.+++.++.-+.++.+.++ .|...|.++.+++.....-
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~r---kR~~kE~e~~~~~a~~~~~ 71 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQR---KRIARDVEQARKFANEKLL 71 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344455555556555555555544444 4555566666665554433
No 203
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=53.65 E-value=1.1e+02 Score=23.95 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=28.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVM 210 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~i 210 (310)
.+..+.+|.++|-.++.+.++++..+++.-.....--..|.|-+..|+ -.+..|+.+++
T Consensus 4 dv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~-~LK~QAVNKLA 62 (69)
T PF08912_consen 4 DVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTER-TLKQQAVNKLA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344555666666666666666655555433222222223333333333 24555555554
No 204
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.50 E-value=71 Score=30.59 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCeeecCCCC
Q 021637 245 YKQLVEILGSLGVVPVETVGN 265 (310)
Q Consensus 245 ~kqL~~vL~k~GVe~I~~vGe 265 (310)
.+.+++-|.-.|-+.|.--|.
T Consensus 141 l~~viNeL~~sGAEaIsIn~~ 161 (247)
T COG3879 141 LQAVINELNISGAEAISINGQ 161 (247)
T ss_pred HHHHHHHHHhccchheeECCE
Confidence 466777888888887755443
No 205
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.45 E-value=4e+02 Score=30.56 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=18.2
Q ss_pred eecCCCCC--CCCCCCceeeeeeCCCCCCCCceeE
Q 021637 259 PVETVGNP--FDPLVKPRVGLKISRVLDEFSQILN 291 (310)
Q Consensus 259 ~I~~vGe~--FDPn~HEAV~~~~s~d~ee~gtVv~ 291 (310)
.++++|+- +++.++.||...-..... +.||.
T Consensus 517 v~G~v~~li~v~~~y~~Aie~alG~~l~--~vVV~ 549 (1163)
T COG1196 517 VYGPVAELIKVKEKYETALEAALGNRLQ--AVVVE 549 (1163)
T ss_pred ccchHHHhcCcChHHHHHHHHHcccccC--CeeeC
Confidence 34455554 777778888876543332 35554
No 206
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=53.45 E-value=52 Score=32.16 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=28.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
.++.+.-+...+..+|....-....|..++.|-.+|++-.|||++.
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666566666666777777777777776543
No 207
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.36 E-value=62 Score=23.79 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
+..++.++..|..+...|..++..++..+..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 208
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.28 E-value=1.2e+02 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
..+++.++..|.++.+.++.+..|+++.-.|+-.|.+..++.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 344455555555555555555555555555555555555544
No 209
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.69 E-value=1.5e+02 Score=25.28 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
-+..+.+.+...+.|+..++.++..|+.+-+.+.+.+.++..+.+..+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666766666666666666666666553
No 210
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.03 E-value=4.1e+02 Score=30.89 Aligned_cols=40 Identities=8% Similarity=0.072 Sum_probs=21.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
.+.+++.++..++.++..+..++..+.++...+++++.++
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665444444444444444444444
No 211
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=51.85 E-value=86 Score=27.15 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
+.+..+.+...+.-.+.|+.++.....++..++.++..+..-..+
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~ 126 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKS 126 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555555555544444433333
No 212
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.67 E-value=49 Score=25.96 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=9.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
....++.+++.|+.++..+.+++.++
T Consensus 70 ~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 70 RIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 213
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=51.60 E-value=99 Score=26.76 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021637 189 NFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 189 N~RKRt~kE~e~~~~~A~~ 207 (310)
+......++.+.....+..
T Consensus 93 ~~l~~A~~ea~~~~~~a~~ 111 (164)
T PRK14473 93 EIIAQARREAEKIKEEARA 111 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 214
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=51.48 E-value=2.5e+02 Score=27.84 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q 021637 263 VGNPFDPL 270 (310)
Q Consensus 263 vGe~FDPn 270 (310)
+..+|+|.
T Consensus 205 ~s~~~s~~ 212 (310)
T PF09755_consen 205 VSAPPSPR 212 (310)
T ss_pred cCCCCCcc
Confidence 45555554
No 215
>PRK02119 hypothetical protein; Provisional
Probab=51.43 E-value=1.1e+02 Score=23.62 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
+++-+.+|+.++.-.+.-+++|.+-+.+.+.+.+-+++.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554444433
No 216
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.40 E-value=1.4e+02 Score=31.90 Aligned_cols=30 Identities=10% Similarity=0.326 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
..+..++..+..++....+.+..+.+++++
T Consensus 450 k~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 450 KELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444555555555554
No 217
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=51.29 E-value=98 Score=25.85 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 126 ~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
++....-.+.|+. ...++..++...|..-+..+-.+++++..|.=....|..+...++.|+++
T Consensus 10 LraQ~~vLKKaVi-eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 10 LRAQNQVLKKAVI-EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443 23344555555555555555555555555555555555555555555554
No 218
>PRK01156 chromosome segregation protein; Provisional
Probab=51.28 E-value=3.7e+02 Score=29.51 Aligned_cols=14 Identities=7% Similarity=-0.138 Sum_probs=8.2
Q ss_pred HHHHHHHHHhCCCe
Q 021637 245 YKQLVEILGSLGVV 258 (310)
Q Consensus 245 ~kqL~~vL~k~GVe 258 (310)
......+|..+|+.
T Consensus 763 ~~~~~e~~~~~~~~ 776 (895)
T PRK01156 763 TSLTRKYLFEFNLD 776 (895)
T ss_pred HHHHHHHHHHhCCC
Confidence 33445577777764
No 219
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=50.59 E-value=70 Score=29.59 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.6
Q ss_pred hhhhhhHHHHH
Q 021637 213 LLQVLDNFERA 223 (310)
Q Consensus 213 LLpVlDnLERA 223 (310)
|--|-|+|+..
T Consensus 162 l~~v~~Dl~~i 172 (195)
T PF12761_consen 162 LKSVREDLDTI 172 (195)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=50.43 E-value=68 Score=30.40 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=36.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
...++..++..++.|+..|+-+|+.+.-++..++.+-.-+-.|.++..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777788888888888888888888887777776666677776443
No 221
>PRK14162 heat shock protein GrpE; Provisional
Probab=50.10 E-value=2.1e+02 Score=26.33 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
..++.++..++.++.+++.++.-+.++...++ .|...|.++.++.....
T Consensus 42 ~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r---kR~~kE~e~~~~~a~~~ 90 (194)
T PRK14162 42 EDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ---NRYAKERAQLIKYESQS 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34445556666666677766666666666555 44455556666554443
No 222
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.06 E-value=3.1e+02 Score=28.41 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=7.3
Q ss_pred HHHHHHHHHhCCCe
Q 021637 245 YKQLVEILGSLGVV 258 (310)
Q Consensus 245 ~kqL~~vL~k~GVe 258 (310)
+++..++|....+.
T Consensus 353 ~~EV~~~la~~~~~ 366 (439)
T KOG2911|consen 353 QEEVEDALASYNVN 366 (439)
T ss_pred HHHHHHHHhcCCCC
Confidence 35555555555444
No 223
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.02 E-value=1.2e+02 Score=25.88 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=31.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAER---ARILRISADFDNFRKRTE 195 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elk---dk~lR~~ADfeN~RKRt~ 195 (310)
.+..+..++..++.+.+.+.++|..|..+.++++ .++..+.++.+.+..|..
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777776665543 334444555555555544
No 224
>PRK14144 heat shock protein GrpE; Provisional
Probab=49.96 E-value=1.8e+02 Score=26.86 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
++.++..++.++.+++.++.-+.++.+.++ .|...|.++.++......-.
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~R---KR~~kE~e~~~~~a~~~~~~ 99 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVR---RRMEREVANAHKYGVEKLIS 99 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666655555555 45555666666655554443
No 225
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.90 E-value=93 Score=27.31 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 186 DFDNFRKRTEKERLSLVTNAQGEVM 210 (310)
Q Consensus 186 DfeN~RKRt~kE~e~~~~~A~~~~i 210 (310)
..++.+....++.+.....+...+-
T Consensus 98 ~~~~~~~~A~~ea~~~~~~a~~~ie 122 (173)
T PRK13460 98 LKNKLLEETNNEVKAQKDQAVKEIE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 226
>PRK04325 hypothetical protein; Provisional
Probab=49.58 E-value=1.2e+02 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
+|+.++.-.+.-+++|.+-+.+.+.+
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~ 38 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQT 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 227
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.58 E-value=64 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
.+++++..+...+..+++++.++++.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 228
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.38 E-value=75 Score=25.74 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
++++..|.++...++-...-..++..||+-|-..|
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455666666666666667778888988776554
No 229
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=49.37 E-value=93 Score=30.50 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=23.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
+-+.++.+++.+++++.+|+.++..|++|+..+|+-++
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666666665443
No 230
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.33 E-value=2.6e+02 Score=27.30 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=51.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK----------ERLSLVTNAQGEVMERL 213 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k----------E~e~~~~~A~~~~ikdL 213 (310)
|+.+....+..++.++..++.+|...+++..++-..+..-.++.+.-+.-... +.... +...+.=+...
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~-~~~a~~~L~~a 87 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEI-KEEAEEELAEA 87 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34444455555555555555555555555544444433222222222222211 11112 22334555778
Q ss_pred hhhhhHHHHHHhchhhcch-hhHhhh---hHHHHHHHHHHHHH
Q 021637 214 LQVLDNFERAKTQIKVQTE-GEEKIN---NSYQSIYKQLVEIL 252 (310)
Q Consensus 214 LpVlDnLERAl~~~~~~~e-~~~~l~---~Gv~mi~kqL~~vL 252 (310)
+|.++.-..|++.++...- ...+|. .++.+|.....-.|
T Consensus 88 ~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl 130 (344)
T PF12777_consen 88 EPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILL 130 (344)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHH
Confidence 8999999999888765321 122333 24555554444444
No 231
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.33 E-value=3.6e+02 Score=28.89 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQV 216 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpV 216 (310)
..+.+.++.+++++++.+..++..++.+++.++..+..+..+.+..+....+-. ..+.+.+=+.+|||=
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le---~~~~l~~k~~~lL~d 391 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE---EELKLKKKTVELLPD 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 344567777888888888888888888888888887777777766554443322 223344444455553
No 232
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.20 E-value=1e+02 Score=23.40 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
.+|+.++.-++.-++++.+-+.+.+.+.+-+++
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333333
No 233
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=48.90 E-value=54 Score=35.28 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=38.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.++++++..+..++..++++|...+.++...+-.+.|...+..|+++|.
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~ 130 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888888888888888888888877653
No 234
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.66 E-value=71 Score=26.30 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
...+++.++..++.++..++++...|+.+++.+++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566666666666666666666666666666554
No 235
>PRK14145 heat shock protein GrpE; Provisional
Probab=48.66 E-value=2.2e+02 Score=26.23 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=32.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
.+..+++++..++.++.+++.++.-+.++.+.++ .|...|.++.+++.......
T Consensus 46 e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~r---kR~~kE~e~~~~~a~e~~~~ 99 (196)
T PRK14145 46 EIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYR---KRTEKEKSEMVEYGKEQVIL 99 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777766666666666555 45555666666655544443
No 236
>PRK00736 hypothetical protein; Provisional
Probab=48.63 E-value=1.2e+02 Score=23.11 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
+.+|+.++.-.+.-+++|.+-+.+.+.+.+-+++++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 237
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.05 E-value=2.1e+02 Score=25.78 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=6.1
Q ss_pred HHHHHHHHHhCC
Q 021637 245 YKQLVEILGSLG 256 (310)
Q Consensus 245 ~kqL~~vL~k~G 256 (310)
.+++..++..++
T Consensus 148 ~~~~~~~~~~~~ 159 (221)
T PF04012_consen 148 QKKVNEALASFS 159 (221)
T ss_pred HHHHHHHhccCC
Confidence 344555555555
No 238
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=47.62 E-value=97 Score=28.67 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=15.5
Q ss_pred ChhhHHHHHHHhhhhhhHHHHHHHHHH
Q 021637 141 DDTKAAEIEALLKSFEDEKIDLERKVV 167 (310)
Q Consensus 141 ~~~~~~e~e~~l~~~~~E~~~L~~el~ 167 (310)
.+.++.+++.++..+.+.+..|+....
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345666777666666665555544333
No 239
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.51 E-value=66 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.|+.+++.++..++.+..+..++...+.+.++.+
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 240
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.35 E-value=5.3e+02 Score=30.27 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCC
Q 021637 237 INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVK 272 (310)
Q Consensus 237 l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~H 272 (310)
....++.....+...-...|+....+.+..|.+...
T Consensus 380 ~~~~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~~ 415 (1353)
T TIGR02680 380 AERELRAAREQLARAAERAGLSPAHTAEPDAALAAQ 415 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 334455566677767777777776665666655554
No 241
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.30 E-value=2.6e+02 Score=26.60 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=8.0
Q ss_pred HHHHHHhhhhhhHHHHHH
Q 021637 207 GEVMERLLQVLDNFERAK 224 (310)
Q Consensus 207 ~~~ikdLLpVlDnLERAl 224 (310)
+.|-++++-=++.|++..
T Consensus 191 e~f~~~~~~E~~~Fe~~K 208 (240)
T cd07667 191 ECFNADLKADMERWQNNK 208 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 242
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.29 E-value=3.8e+02 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
.|++....+|++++.++..++.++......+-|
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~ 473 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYMN 473 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666666666666666666666666553
No 243
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.05 E-value=62 Score=28.48 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=26.3
Q ss_pred hHHHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDL-------ERKVVNLSEELSAERARILRISA 185 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L-------~~el~~Le~el~elkdk~lR~~A 185 (310)
+..++..++-.-..|++.| .++|.+|.+|+.+|+.++.-...
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655 35677788888777776654333
No 244
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.94 E-value=28 Score=31.34 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 126 ~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
|++.=..|-.|++ +.+=+|.+| +|++.|+.++.-|+.|+.+||..+
T Consensus 2 LeD~EsklN~AIE-----RnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIE-----RNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHH-----HhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456777775 445566666 667778877778888877777665
No 245
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.74 E-value=88 Score=28.37 Aligned_cols=26 Identities=8% Similarity=0.332 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.++.+++.++.+...+..+.++|.+-
T Consensus 141 ~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 141 EIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777654
No 246
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.73 E-value=2.8e+02 Score=26.80 Aligned_cols=6 Identities=0% Similarity=-0.119 Sum_probs=3.1
Q ss_pred CCeEee
Q 021637 302 TTFLTR 307 (310)
Q Consensus 302 ~~RVLR 307 (310)
.|+|.+
T Consensus 346 ~g~V~~ 351 (423)
T TIGR01843 346 NGKVKS 351 (423)
T ss_pred cEEEEE
Confidence 455554
No 247
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.64 E-value=3.9e+02 Score=28.50 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
.++.+...|+.++..|+.++...+++...+....
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333333
No 248
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.46 E-value=1.5e+02 Score=31.61 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
...+..|+++++.++.+|..+.......|++..+..+.....
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~ 382 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTA 382 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888888777776654433
No 249
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=46.31 E-value=68 Score=25.89 Aligned_cols=36 Identities=3% Similarity=0.204 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
..|+.+++.++.+++.+..++..+...+.+++.++.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666666665554
No 250
>PLN02939 transferase, transferring glycosyl groups
Probab=46.21 E-value=4.8e+02 Score=29.86 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=11.6
Q ss_pred HhhhhHHHHHHHHHHHHHHh
Q 021637 235 EKINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k 254 (310)
..+++.|+.-.+.|.+.|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 375 HSYIQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666655
No 251
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=46.10 E-value=1.6e+02 Score=23.89 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 021637 135 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL----VTNAQGEVM 210 (310)
Q Consensus 135 ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~----~~~A~~~~i 210 (310)
..+...+.+...++..++.....++++.-+++..+... .+-+..+..+...|..|+.-..+=.... ...|..-+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~ 145 (181)
T PF12729_consen 67 RYLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILS-PEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILN 145 (181)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44445566666666555555555555444444433111 1123334444444444433332222211 112333333
Q ss_pred HHhhhhhhHHHHHHhc
Q 021637 211 ERLLQVLDNFERAKTQ 226 (310)
Q Consensus 211 kdLLpVlDnLERAl~~ 226 (310)
..+-|..+.+...+..
T Consensus 146 ~~~~~~~~~~~~~l~~ 161 (181)
T PF12729_consen 146 GEARPAFDELRDALDE 161 (181)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 4444666666655544
No 252
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.06 E-value=2.5e+02 Score=27.87 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARI-------LRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~-------lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
..|..++.+++.++.++..+| ..+++..+++++.+.++......
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~ 307 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTS 307 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777776653 57778888888888777665543
No 253
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.96 E-value=79 Score=26.56 Aligned_cols=27 Identities=4% Similarity=0.037 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+++-++.+++.+..+..++...+.+.+
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 254
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.89 E-value=1.3e+02 Score=22.60 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=16.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
+..+..++..|..++..|..++..++....-++.|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554444444333
No 255
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=45.84 E-value=4e+02 Score=28.41 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLS-------EELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le-------~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.++++.++..+..|+++++.++.+.+ +++.++...+--+.|+..=+++|..
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 44445555555555555555555443 3333444445555566655555543
No 256
>PRK14140 heat shock protein GrpE; Provisional
Probab=45.60 E-value=2.4e+02 Score=25.82 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=23.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
.++..++.++.+++.++.-+.++.+.++ .|...|.++.++......
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~r---kR~~rE~~~~~~~a~~~~ 89 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYK---RRIQKENEAAEKYRAQSL 89 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3344445555556655555555554444 444445555555444433
No 257
>PHA01750 hypothetical protein
Probab=45.43 E-value=68 Score=24.99 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=13.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
.++..+..|+.+++.++.++++++.+++.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 258
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=45.25 E-value=3.7e+02 Score=27.85 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF 220 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnL 220 (310)
....+++.+....+++..+.+...++..+|+|..+++..+.......-.+..++.|+.+.-..
T Consensus 78 l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~ 140 (448)
T COG1322 78 LKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREV 140 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777888889999999999999999999998888888888888887554443
No 259
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.25 E-value=1.1e+02 Score=24.74 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
.+...++.|..-|..|+++.+.+..++.++.....-.|+-++.+.
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444445555555555555555555555555555444443
No 260
>PRK14153 heat shock protein GrpE; Provisional
Probab=45.24 E-value=1.5e+02 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
.++.++..++.++.+++.++.-+.++.+.++. |...|.+++++......
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rK---R~~kE~e~~~~~a~~~~ 85 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFRK---RTAREMEENRKFVLEQV 85 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33444455555556666666555555555554 44445555555544433
No 261
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.22 E-value=3.8e+02 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=6.6
Q ss_pred CCchHHHHHHHHHH
Q 021637 121 APTSFIMETLQSYK 134 (310)
Q Consensus 121 ~~~~~~~~~~r~y~ 134 (310)
.-.|++.....-|+
T Consensus 325 ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE 338 (493)
T ss_pred hhhhhhhHHHHHHH
Confidence 44455554444444
No 262
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=45.21 E-value=1.9e+02 Score=24.48 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
+..+...+..+-+++..|.+..-.++.++.++++.+.....++..++.+...-..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777777777777777777777777777776666644433
No 263
>PRK04406 hypothetical protein; Provisional
Probab=45.15 E-value=1.5e+02 Score=23.15 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=22.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
++..+..++..+.-++.-|..|.+.+......+.++.+.+..++.|+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444445555555565555
No 264
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=45.12 E-value=1.4e+02 Score=25.64 Aligned_cols=115 Identities=8% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhch
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~ 227 (310)
++.--..+.+.+++.++...+.++.+.+++.++..+..+...++....++-+..+...+...=.+.=-++.+-...+..-
T Consensus 34 l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e 113 (159)
T PRK13461 34 IDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQRE 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcchhhHhhhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCCCCCcee
Q 021637 228 KVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLVKPRV 275 (310)
Q Consensus 228 ~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~-vGe~FDPn~HEAV 275 (310)
... ..+++.+-...+-+..... +|...|+..|..+
T Consensus 114 ~~~-------------a~~~l~~ei~~lA~~~a~kil~~~~~~~~~~~l 149 (159)
T PRK13461 114 KEK-------------AEYEIKNQAVDLAVLLSSKALEESIDESEHRRL 149 (159)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 265
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=44.97 E-value=2.4e+02 Score=25.51 Aligned_cols=38 Identities=0% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021637 180 ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (310)
Q Consensus 180 ~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVl 217 (310)
+.++..+.+++++|+.......++..+-..-..++.++
T Consensus 50 ~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~ 87 (198)
T PRK01558 50 KAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLF 87 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777788888888877777777666666666544
No 266
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=44.96 E-value=50 Score=23.64 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNL 169 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~L 169 (310)
+.+++..+..+..++..|..++..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 267
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.76 E-value=5.5e+02 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHhCCCe
Q 021637 239 NSYQSIYKQLVEILGSLGVV 258 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~GVe 258 (310)
.-++-+.+++..-|...||-
T Consensus 750 ~~~~~le~~~~~eL~~~GvD 769 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVD 769 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 34455666666677777764
No 268
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=44.71 E-value=98 Score=29.25 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=15.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
+..+..++.++..++..+...+.++...+..|.|.
T Consensus 100 ~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~ 134 (334)
T TIGR00998 100 EITVQQLQAKVESLKIKLEQAREKLLQAELDLRRR 134 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444444444444444444444444443
No 269
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.64 E-value=1.3e+02 Score=30.19 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecC--CCCCCCCC
Q 021637 235 EKINNSYQSIYKQLVEILGSLGVVPVET--VGNPFDPL 270 (310)
Q Consensus 235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~--vGe~FDPn 270 (310)
.++.-.+-+.+..|. ...++|+..++- +...||+.
T Consensus 329 ~~~~~~~~l~~~~i~-~a~~~G~~~ydf~Gi~~~~~~~ 365 (406)
T PF02388_consen 329 RKFYAPYLLQWEAIK-YAKEKGIKRYDFGGISGDFDGS 365 (406)
T ss_dssp GGCTHHHHHHHHHHH-HHHHTT-SEEEEEE-SSSSTTT
T ss_pred HhcCcchHHHHHHHH-HHHHCCCCEEEeeCCCCCCCCC
Confidence 445544444455444 466779999885 33456663
No 270
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=44.59 E-value=4.5e+02 Score=29.21 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=34.5
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR-ISADFDNFRKRTEKERLSL--VTNAQGEVMERL 213 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR-~~ADfeN~RKRt~kE~e~~--~~~A~~~~ikdL 213 (310)
.++.+|..++.+-+|.+.|+.+++.|++++. .++++ .+|+.+.+.+-+..|-+.+ ...+...+|+.|
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ela---~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKL 479 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKELA---AALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKL 479 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555555555566666666666655543 23444 5566666666555544432 223334444444
No 271
>PRK14141 heat shock protein GrpE; Provisional
Probab=44.30 E-value=2e+02 Score=26.74 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=28.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
++.++..++.++.+++.++.-+.++.+.++ .|...|.+++++......
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~R---KR~~kE~e~~~~~a~~~~ 83 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLR---KRTQRDVADARAYGIAGF 83 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 444555666666777766666666666555 455556666666554443
No 272
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.14 E-value=10 Score=31.22 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 184 SADFDNFRKRTEKERLSLVTNAQ 206 (310)
Q Consensus 184 ~ADfeN~RKRt~kE~e~~~~~A~ 206 (310)
+.-.++++....++...+...|.
T Consensus 73 q~~a~~~~~~A~~eA~~i~~~A~ 95 (131)
T PF05103_consen 73 QETADEIKAEAEEEAEEIIEEAQ 95 (131)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333
No 273
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.96 E-value=2.2e+02 Score=25.99 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHhcCCCh
Q 021637 123 TSFIMETLQSYKEALASNDD 142 (310)
Q Consensus 123 ~~~~~~~~r~y~ea~~~~~~ 142 (310)
.+.+...++...+.=.+|.+
T Consensus 68 ~~~f~~~~~tl~~LE~~GFn 87 (190)
T PF05266_consen 68 RSSFESLMKTLSELEEHGFN 87 (190)
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 34444444444443334444
No 274
>PRK10780 periplasmic chaperone; Provisional
Probab=43.94 E-value=2.2e+02 Score=24.81 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=4.0
Q ss_pred hhhhHHHHHH
Q 021637 215 QVLDNFERAK 224 (310)
Q Consensus 215 pVlDnLERAl 224 (310)
|+++.+..++
T Consensus 120 ~i~~ki~~ai 129 (165)
T PRK10780 120 KILTRIQTAV 129 (165)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 275
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.81 E-value=2.3e+02 Score=25.04 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLS-EELSAERARILRISADFDNFRKRTEKERLSLVTNAQ 206 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le-~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~ 206 (310)
.+++.........+.+|+.++..++ .+...++....+++.|++.++.++..|....+....
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~k 108 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVK 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666665443 445667777778888888888888777776665443
No 276
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.61 E-value=1e+02 Score=33.27 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
+.++|...+.++.|+.++..++++|++.+...+-.+.++.-+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ 136 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGE 136 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 344444445555555555555555555554444444444333
No 277
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=43.41 E-value=79 Score=26.68 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFE----DEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~----~E~~~L~~el~~Le~el~elkdk~l 181 (310)
..+.++++..+++-..-++.--.+++..+..+. .+..+|..+|..|++++.++++++.
T Consensus 46 ~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 46 RFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666654443222222222222222222 2335666666666666666665543
No 278
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=43.22 E-value=1.2e+02 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 126 ~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
+..+-|.|+......+...+ |.-+....++.++++++++.+++++..++.++.
T Consensus 25 l~kl~r~Y~~lm~g~~~~~l---E~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 25 LRKLKRRYDALMRGKDGKNL---EDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred HHHHHHHHHHHhCCCCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888876555544 444656666666666666666666666555443
No 279
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.13 E-value=1.5e+02 Score=27.00 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAER 177 (310)
Q Consensus 160 ~~L~~el~~Le~el~elk 177 (310)
..++.++.+|+..+-+++
T Consensus 127 ~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 127 KELESEIKELEMKILELQ 144 (190)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 280
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=42.86 E-value=83 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
.++..+|..+++|+..|++=|...+..+.++|.++
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777888888888888888888888888877665
No 281
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.83 E-value=4.2e+02 Score=27.82 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.....++...+..+.+.+..++++...+.+.+..+...-.+++....+|+..+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555443
No 282
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=42.83 E-value=3.1e+02 Score=26.31 Aligned_cols=10 Identities=0% Similarity=-0.014 Sum_probs=4.5
Q ss_pred CccCCCcccc
Q 021637 68 LASTGETETT 77 (310)
Q Consensus 68 ~~~~g~te~~ 77 (310)
+..+|--+++
T Consensus 38 ~t~~~~v~~~ 47 (346)
T PRK10476 38 STDDAYIDAD 47 (346)
T ss_pred ecCCeEEEee
Confidence 3444444443
No 283
>PRK14127 cell division protein GpsB; Provisional
Probab=42.79 E-value=63 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=11.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
....|..+..+...+..++..|++++..+
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l 56 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARL 56 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333
No 284
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.49 E-value=1e+02 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
..++..+++.+..+...-..+..++.|..+|.+--+||+
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 285
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.46 E-value=45 Score=26.43 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSA 175 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~e 175 (310)
.+..|...|+.+|..|++++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444
No 286
>PF13514 AAA_27: AAA domain
Probab=42.40 E-value=5.7e+02 Score=29.14 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 021637 239 NSYQSIYKQLVEILGSLG 256 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~G 256 (310)
.-+.....++...+..+|
T Consensus 310 ~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 310 AELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 334445667777888888
No 287
>PRK00295 hypothetical protein; Provisional
Probab=42.25 E-value=1.5e+02 Score=22.52 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
|+.++.-.+.-+++|.+-+.+.+.+.
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 288
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.88 E-value=2.8e+02 Score=25.51 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKV 229 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~ 229 (310)
..|..+|..|++++..+++-.-..-||..-+..-+.-+-.+.....+.+.+...=.-+-||.-+..++.+
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtp 151 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTP 151 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3444555555555555555555555555555555444444444444455555555566677777666654
No 289
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=41.82 E-value=1.6e+02 Score=27.36 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021637 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQV 216 (310)
Q Consensus 181 lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpV 216 (310)
..++++.+.++.+...+.+..+..+...+-..+..+
T Consensus 93 ~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~l 128 (246)
T TIGR03321 93 DEAREEADEIREKWQEALRREQAALSDELRRRTGAE 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666665555555433
No 290
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=41.75 E-value=2.4e+02 Score=24.66 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARI-LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~-lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERA 223 (310)
.+.++++.+.+.+..++.+.. .++....++++++++.+.+..+..+.+.+-...=.+++.|..-
T Consensus 61 ~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~ 125 (161)
T COG0711 61 AEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAE 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554544443332 3555677778888888888877777777666655555555444
No 291
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.61 E-value=2.2e+02 Score=27.85 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=7.5
Q ss_pred HHhhhhhhHHHHHHh
Q 021637 211 ERLLQVLDNFERAKT 225 (310)
Q Consensus 211 kdLLpVlDnLERAl~ 225 (310)
.+++.-+...++-++
T Consensus 249 ~e~~~~I~~ae~~~~ 263 (312)
T smart00787 249 SELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 292
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.28 E-value=2.1e+02 Score=30.37 Aligned_cols=16 Identities=0% Similarity=0.273 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSE 171 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~ 171 (310)
..++.+.+++++++++
T Consensus 190 ~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKK 205 (555)
T ss_pred chhHHHHHHHHHHHHh
Confidence 4455556666655554
No 293
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.25 E-value=3.9e+02 Score=26.98 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 132 SYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 132 ~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+|++-+..--++.+..+.++.+++..-.++|..-..+|+.+...|+.+..-++++.+=+++..+.
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444443333344444444444443334444444455555555555555555666555555444
No 294
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.11 E-value=2e+02 Score=23.58 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAE--RARILRISADFDNFR 191 (310)
Q Consensus 163 ~~el~~Le~el~el--kdk~lR~~ADfeN~R 191 (310)
...+..++.+++.+ ++.+.+++-+..+++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 33333333333333 333333333333333
No 295
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.98 E-value=2.3e+02 Score=29.58 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhhhhhh
Q 021637 130 LQSYKEALASNDDTKAAEIEALLKSFED 157 (310)
Q Consensus 130 ~r~y~ea~~~~~~~~~~e~e~~l~~~~~ 157 (310)
++.|.+.+ .-|...+.+++..+..+..
T Consensus 289 l~~~~~~l-~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 289 LQNYLDEL-EFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 44455544 2344555666655555444
No 296
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.89 E-value=1.7e+02 Score=22.57 Aligned_cols=9 Identities=0% Similarity=0.128 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 021637 172 ELSAERARI 180 (310)
Q Consensus 172 el~elkdk~ 180 (310)
-+++|.+-+
T Consensus 23 tIe~Ln~~v 31 (72)
T PRK02793 23 TIEELNVTV 31 (72)
T ss_pred HHHHHHHHH
Confidence 333333333
No 297
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=40.87 E-value=3e+02 Score=25.54 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcC---CChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSYKEALAS---NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~---~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+...+..|...+.. .....-...+.++..+..+.+.+...+..+++-..++-.+|.+...-.++|++.
T Consensus 41 ~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566555432 111222333556777788888888888899999999999999999998888874
No 298
>smart00338 BRLZ basic region leucin zipper.
Probab=40.78 E-value=1e+02 Score=22.59 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
..|+.++..|+.+..+|..++..+..+...++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444
No 299
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=40.42 E-value=1.9e+02 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.461 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A 205 (310)
..+.+.+-|..|..++...+++......+..+||..+.++.......+
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~ 151 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDV 151 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 355677778888888888888888888888888888888877665443
No 300
>PRK02119 hypothetical protein; Provisional
Probab=40.37 E-value=1.7e+02 Score=22.58 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=20.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+.++|..+.-.++-+++|...|...++++ .++.+.+..++.|+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl 53 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 444455444444444444444444444444 44444455555554
No 301
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=40.25 E-value=3.2e+02 Score=27.14 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCC
Q 021637 204 NAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGV 257 (310)
Q Consensus 204 ~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GV 257 (310)
-.+-.++-.+|-+.|+=.|.-.|+. .+++-||.+|...+.+..+..+.
T Consensus 186 l~VCeVCGa~L~~~D~d~RlaDHf~------GKlHlGy~~iR~~l~eLk~~~~~ 233 (319)
T KOG0796|consen 186 LRVCEVCGAFLSVNDADRRLADHFG------GKLHLGYVLIREKLAELKKEKAK 233 (319)
T ss_pred hhHHHhhhHHHhccchHHHHHHhhc------chHHHHHHHHHHHHHHHHHHHhH
Confidence 3445677889999999999887773 36889999987766666665554
No 302
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=39.96 E-value=2.7e+02 Score=27.09 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=3.5
Q ss_pred CCeEee
Q 021637 302 TTFLTR 307 (310)
Q Consensus 302 ~~RVLR 307 (310)
+|+|.+
T Consensus 256 ~g~V~~ 261 (370)
T PRK11578 256 EGVLKD 261 (370)
T ss_pred EEEEEE
Confidence 566654
No 303
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=39.94 E-value=2.9e+02 Score=30.16 Aligned_cols=57 Identities=9% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 166 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 166 l~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
.+.|+.....+.++|..+.+|++.+|+-+..++=. .....+..++--.+|.+++-+.
T Consensus 237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~---~vFr~l~~q~~~m~esver~~~ 293 (683)
T PF08580_consen 237 CEELEDRYERLEKKWKKLEKEAESLKKELIEDRWN---IVFRNLGRQAQKMCESVERSLS 293 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777778888888887665444322 2223333444444555555543
No 304
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.81 E-value=6.5e+02 Score=29.09 Aligned_cols=145 Identities=13% Similarity=0.211 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 021637 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT-N 204 (310)
Q Consensus 126 ~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~-~ 204 (310)
|..-|..|+..+.+ .......+..++..++.+....-+++.+|...+.+.+.++--+.|++--.+++.......-+. +
T Consensus 395 ir~ei~~l~~~i~~-~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 395 IRSEIEKLKRGIND-TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666643 334445556677777777777777777787777777777777777776666655443322111 1
Q ss_pred HHHHHHHHhh-hhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCCe-eecCCCCCCC--CCCCceeee
Q 021637 205 AQGEVMERLL-QVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVV-PVETVGNPFD--PLVKPRVGL 277 (310)
Q Consensus 205 A~~~~ikdLL-pVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe-~I~~vGe~FD--Pn~HEAV~~ 277 (310)
--++-++.+| .+.++++++-..+... ...++..|+..+.+ |...+++. .++++++-|+ +.+--||..
T Consensus 474 REE~~l~~~i~~~~~dl~~~~~~L~~~--~~r~v~nGi~~v~~----I~e~~k~ngv~G~v~eL~~v~~~f~tavEv 544 (1200)
T KOG0964|consen 474 REEKKLRSLIANLEEDLSRAEKNLRAT--MNRSVANGIDSVRK----IKEELKPNGVFGTVYELIKVPNKFKTAVEV 544 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhhHHHHH----HHHHhcccccceehhhhhcCCHHHHhHHhh
Confidence 1122222222 2344555554433321 22356677766654 33444422 2455666553 444444444
No 305
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=39.70 E-value=1.4e+02 Score=22.53 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhhHHH
Q 021637 207 GEVMERLLQVLDNFE 221 (310)
Q Consensus 207 ~~~ikdLLpVlDnLE 221 (310)
.++.++|-.+-+|..
T Consensus 37 ~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 37 KNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 306
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=39.69 E-value=2.7e+02 Score=24.72 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 163 ERKVVNLSEELSAERAR-ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 163 ~~el~~Le~el~elkdk-~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
++++.+.+.+...+... -.++.|+++-=|+.++.+..+... .=++++.-++|+|.+-.
T Consensus 68 e~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~----~~~~~~~~~~~~~~~~~ 126 (155)
T PRK06569 68 NEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSIN----QNIEDINLAAKQFRTNK 126 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhH
Confidence 34444444444444333 445555555555555544443333 33445666677766543
No 307
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=39.60 E-value=77 Score=25.36 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 021637 244 IYKQLVEILGS 254 (310)
Q Consensus 244 i~kqL~~vL~k 254 (310)
+-.+|..+|..
T Consensus 49 tp~eL~~~L~~ 59 (83)
T PF14193_consen 49 TPEELAAFLRA 59 (83)
T ss_pred CHHHHHHHHHH
Confidence 33444444433
No 308
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=39.32 E-value=3.3e+02 Score=26.73 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHH-HHHHHHHHHHHHH
Q 021637 128 ETLQSYKEALASNDDTKAAEIEALLKSFEDEKI-DLERKVVNLSEEL 173 (310)
Q Consensus 128 ~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~-~L~~el~~Le~el 173 (310)
.+.+-|.+.-++-...+.++++.+|+++..... +....+..|+.++
T Consensus 27 ~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~ 73 (291)
T KOG4466|consen 27 NLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESR 73 (291)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 344444455555555677777777777766422 3334444554443
No 309
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=39.26 E-value=2.9e+02 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
|.++|+.+|.+++++|..|+.-+.-.....-.+||++
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4456667777777777777666665556666666664
No 310
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=39.24 E-value=2.7e+02 Score=26.22 Aligned_cols=18 Identities=6% Similarity=0.318 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021637 178 ARILRISADFDNFRKRTE 195 (310)
Q Consensus 178 dk~lR~~ADfeN~RKRt~ 195 (310)
|++..+.+|+....+|..
T Consensus 159 dK~~~a~~Ev~e~e~k~~ 176 (234)
T cd07665 159 DKLQQAKDEIAEWESRVT 176 (234)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455555666666555554
No 311
>PRK12704 phosphodiesterase; Provisional
Probab=38.99 E-value=2.4e+02 Score=29.61 Aligned_cols=9 Identities=0% Similarity=-0.355 Sum_probs=3.6
Q ss_pred eecCCCeEe
Q 021637 298 VKTWTTFLT 306 (310)
Q Consensus 298 ~Lg~~~RVL 306 (310)
.+|-.||=|
T Consensus 225 iigreGrni 233 (520)
T PRK12704 225 IIGREGRNI 233 (520)
T ss_pred eeCCCcchH
Confidence 333344433
No 312
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.81 E-value=2.6e+02 Score=24.22 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
.+..++.+|..++.++...+++|.++.
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554433
No 313
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.80 E-value=1.2e+02 Score=30.48 Aligned_cols=13 Identities=8% Similarity=0.358 Sum_probs=9.3
Q ss_pred CCCCCCCCCCcee
Q 021637 263 VGNPFDPLVKPRV 275 (310)
Q Consensus 263 vGe~FDPn~HEAV 275 (310)
.|.+++-|+-.++
T Consensus 203 t~~KY~hni~d~~ 215 (420)
T PF07407_consen 203 TGRKYNHNIRDNS 215 (420)
T ss_pred hhhhccccccccc
Confidence 4888887776663
No 314
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.74 E-value=2.5e+02 Score=28.37 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHH-hchhhcchhhH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNF-ERAK-TQIKVQTEGEE 235 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnL-ERAl-~~~~~~~e~~~ 235 (310)
|...|+++-..|++|+.+|+-++.|+.+|+- |+-. -|+.+. ++-.++.++.++|-+ ++.+ ++.+. .-..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l--~s~V-~E~vet----~dv~~d~i~Kimnk~Re~vlfq~d~~--~ld~ 103 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML--RSHV-CEDVET----NDVIYDKIVKIMNKMRELVLFQRDDL--KLDS 103 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh--hhhh-hhHHHH----HHHHHHHHHHHHHHHhhhhhhccccc--cccH
Confidence 3445555566666666666666666644331 1111 112222 123556666777776 3333 22110 0001
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCC
Q 021637 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVL 283 (310)
Q Consensus 236 ~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ 283 (310)
.+..- ++.|-+..+++... .||-..|--|...-++++
T Consensus 104 ~lLAR--------ve~LlRlK~e~~~~---~f~k~~~~lIg~Yf~D~v 140 (420)
T PF07407_consen 104 VLLAR--------VETLLRLKDEQPSA---EFDKDSHPLIGRYFNDAV 140 (420)
T ss_pred HHHHH--------HHHHHHhhhhcccc---cccchhhhHHhhhcCccc
Confidence 12222 23444555554433 577777766666544443
No 315
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=38.50 E-value=1.9e+02 Score=22.60 Aligned_cols=55 Identities=24% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK---RTEKERLSLV 202 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK---Rt~kE~e~~~ 202 (310)
|-+-+..+++|-+.+.-+.=+|++++...+.++--++-..+--+| |+.||+.+++
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar 63 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAR 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Confidence 344567778888877777777888887777777666665555444 5555555444
No 316
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=38.47 E-value=2e+02 Score=22.83 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.++...+..-++|++.|..-+..|+.++..+.+-..+++++..+++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666666666666666666666666666666553
No 317
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.42 E-value=1.3e+02 Score=29.14 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021637 196 KERLSLVTNAQGEVMER 212 (310)
Q Consensus 196 kE~e~~~~~A~~~~ikd 212 (310)
++++..++.-++.+.+.
T Consensus 266 ~~~ek~Hke~v~qL~~k 282 (305)
T KOG3990|consen 266 KELEKKHKERVQQLQKK 282 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455554444554443
No 318
>PRK15396 murein lipoprotein; Provisional
Probab=38.38 E-value=1.7e+02 Score=23.21 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=14.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
+.++..++..|..++..+...+..++....-++
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~ 59 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333
No 319
>PRK00295 hypothetical protein; Provisional
Probab=38.22 E-value=1.8e+02 Score=22.15 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=18.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+.++|..+.-.++-++.|...|...+++++.++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555555555555555555554444
No 320
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.15 E-value=2.8e+02 Score=27.40 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
++.....+|..|..++..-.+.+.|.+-+...+..++..-....+.++.+
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444445555555555555555555555555555555555555555544
No 321
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.15 E-value=3.2e+02 Score=25.09 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAER 177 (310)
Q Consensus 161 ~L~~el~~Le~el~elk 177 (310)
.++.++..+++++...+
T Consensus 74 ~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 322
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.14 E-value=2.8e+02 Score=24.46 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred hhHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 143 TKAAEIEALLKSFE-DEKIDLERKVVNLSEELSAERA----RILRISA----DFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 143 ~~~~e~e~~l~~~~-~E~~~L~~el~~Le~el~elkd----k~lR~~A----DfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
+.++++..++...+ .+...++.+...|+.+++.+++ .+.++.+ ||.+-|-|...+....... ++.+=..+
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k-i~e~~~ki 136 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK-IQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34455554444333 2334444444444444444333 3333433 4444444544443332222 33333333
Q ss_pred hhhhhHHHHHHhchh
Q 021637 214 LQVLDNFERAKTQIK 228 (310)
Q Consensus 214 LpVlDnLERAl~~~~ 228 (310)
-.-+.+|...++..+
T Consensus 137 ~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 137 DTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344544444433
No 323
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=38.04 E-value=2.2e+02 Score=25.95 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHHhc
Q 021637 122 PTSFIMETLQSYKEALA 138 (310)
Q Consensus 122 ~~~~~~~~~r~y~ea~~ 138 (310)
=+..+.++-+.|++...
T Consensus 115 C~N~C~e~~~~~~~~~~ 131 (176)
T PF12999_consen 115 CPNTCAELGKEYREELE 131 (176)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 34566777777776664
No 324
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.88 E-value=6.4e+02 Score=29.86 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=32.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+++++....+......-+++.+|+..++++|-+++..-++..+..+-.
T Consensus 1601 ~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a 1649 (1758)
T KOG0994|consen 1601 AKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTA 1649 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444444455556667788888888888888887777777766543
No 325
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=37.73 E-value=2.8e+02 Score=24.28 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHhhhhhhHHHHHHhchhhcch--hh--------HhhhhHHHHHHHHHHHHHHh
Q 021637 211 ERLLQVLDNFERAKTQIKVQTE--GE--------EKINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 211 kdLLpVlDnLERAl~~~~~~~e--~~--------~~l~~Gv~mi~kqL~~vL~k 254 (310)
..+++++.+|+.++..+..... +. .-+..++.+|..-|.++|+.
T Consensus 95 ~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~ 148 (157)
T PF04136_consen 95 DSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRS 148 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777665543211 00 12334455556666666554
No 326
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.63 E-value=1.3e+02 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
++.+..+.+.+..+.+++..+...+.++.
T Consensus 107 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 107 EKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 327
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.57 E-value=7.4e+02 Score=30.57 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 021637 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERL-----SLVTNAQGEVMERLLQVLDNFERAKTQ 226 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e-----~~~~~A~~~~ikdLLpVlDnLERAl~~ 226 (310)
.+..++..+..+..++..+.....|++.++..-.+ .-.+...+..+.++...+...+.-.++
T Consensus 944 ~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~ 1010 (1930)
T KOG0161|consen 944 QLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKS 1010 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444445555555443111 111222555555665555555554444
No 328
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.49 E-value=5.3e+02 Score=27.36 Aligned_cols=68 Identities=19% Similarity=0.103 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 123 TSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 123 ~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
.|+++.+++-..-.+- ..+.-++.+-++++-|+.+|+-++-. ..++++-+.|.+++-..+|..++|..
T Consensus 498 ~SS~eTll~niq~llk----va~dnar~qekQiq~Ek~ELkmd~lr----erelreslekql~~ErklR~~~qkr~ 565 (641)
T KOG3915|consen 498 LSSIETLLTNIQGLLK----VAIDNARAQEKQIQLEKTELKMDFLR----ERELRESLEKQLAMERKLRAIVQKRL 565 (641)
T ss_pred chhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664322221 11112233334455555555533322 23466666666666666555444433
No 329
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=37.06 E-value=2.6e+02 Score=23.61 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhCCCeee
Q 021637 240 SYQSIYKQLVEILGSLGVVPV 260 (310)
Q Consensus 240 Gv~mi~kqL~~vL~k~GVe~I 260 (310)
-+..|.+.+..+-+++|+.-|
T Consensus 114 i~~~i~~~v~~~a~~~g~~~V 134 (158)
T PF03938_consen 114 IQKKINKAVEEYAKENGYDLV 134 (158)
T ss_dssp HHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHHHcCCeEE
Confidence 344566666667777777766
No 330
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=36.94 E-value=2.8e+02 Score=24.58 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021637 182 RISADFDNFRKRTEKE 197 (310)
Q Consensus 182 R~~ADfeN~RKRt~kE 197 (310)
-+..+.++.-+.+.++
T Consensus 103 ~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 103 SLVQESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 331
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.74 E-value=3.7e+02 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=14.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+..++.+++++.+.|+.++..+++.++.++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 332
>PRK00106 hypothetical protein; Provisional
Probab=36.64 E-value=2.8e+02 Score=29.42 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=5.8
Q ss_pred cceeecCCCeEee
Q 021637 295 SGFVKTWTTFLTR 307 (310)
Q Consensus 295 kGY~Lg~~~RVLR 307 (310)
||-.+|-.||-||
T Consensus 237 kGriIGreGrNir 249 (535)
T PRK00106 237 KGRIIGREGRNIR 249 (535)
T ss_pred hcceeCCCcchHH
Confidence 3444444455444
No 333
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=36.43 E-value=2.7e+02 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=11.2
Q ss_pred HHHhhhhhhHHHHHHh
Q 021637 210 MERLLQVLDNFERAKT 225 (310)
Q Consensus 210 ikdLLpVlDnLERAl~ 225 (310)
.+.+|.++|.++...+
T Consensus 119 ~~~mi~iL~~Ie~l~~ 134 (142)
T PF04048_consen 119 YKEMIEILDQIEELRQ 134 (142)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567778888877654
No 334
>PRK14011 prefoldin subunit alpha; Provisional
Probab=36.42 E-value=2.2e+02 Score=24.88 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
++.+++.|++..+.+...+.......+.++++++.....
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 335
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=36.26 E-value=5.2e+02 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
.|+.++......+..+++++.+++.
T Consensus 239 ~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 239 DLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554
No 336
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.26 E-value=2.6e+02 Score=23.41 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 129 TLQSYKEALASNDDTKAAEIEALLK--SFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 129 ~~r~y~ea~~~~~~~~~~e~e~~l~--~~~~E~~~L~~el~~Le~el~elk 177 (310)
-+.-|+++.. ..+..+|..+. ....+++.|.+.+..+-+++.++.
T Consensus 27 ef~efKd~~~----q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~ 73 (102)
T PF01519_consen 27 EFDEFKDSNN----QRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQ 73 (102)
T ss_dssp HHHHH---HT----TB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446665332 23444444444 333444444444444444444433
No 337
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.19 E-value=3.6e+02 Score=28.82 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=42.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
.++++++.+..++++....++.+..|++.-.+.++.+.|.+-...-.+|++++.
T Consensus 383 ~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~ 436 (570)
T COG4477 383 NLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777777778888888888888888887778888888888777777777764
No 338
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.15 E-value=5.2e+02 Score=26.89 Aligned_cols=10 Identities=0% Similarity=0.228 Sum_probs=3.8
Q ss_pred HHHHhhhhhh
Q 021637 148 IEALLKSFED 157 (310)
Q Consensus 148 ~e~~l~~~~~ 157 (310)
+...+..+..
T Consensus 256 a~~~i~~L~~ 265 (582)
T PF09731_consen 256 AKERIDALQK 265 (582)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 339
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.07 E-value=1.1e+02 Score=23.94 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
++.+|+.++..|+.++.+++..+..+
T Consensus 44 eNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 44 ENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 340
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.04 E-value=84 Score=25.99 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
..++|+..|+.++..|+.|++ +|+-.+.|-+-|++++
T Consensus 75 ~~~~ei~~L~~el~~L~~E~d-----iLKKa~~~~~~~~~~~ 111 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENE-----LLKEAVEYGRAKKWIA 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhchhhhhh
Confidence 445566667666666666654 5555666666666653
No 341
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=36.02 E-value=2.6e+02 Score=23.41 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
++.+++++..++.-+++++.......
T Consensus 24 i~~~~~kl~~l~~~~~~~~~~~~~~~ 49 (134)
T PF08336_consen 24 IEELQEKLDTLKRFLDEMKREHEKAK 49 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444433333
No 342
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.95 E-value=2.3e+02 Score=22.75 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=39.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFER 222 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLER 222 (310)
.++..++.+...+...+..+..++..+.++..|+.++... .+.+-|++.+-...|.--+..|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~k---------adqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAK---------ADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677777777777777777887888888887776433 333345555554444444434333
No 343
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=35.94 E-value=4.3e+02 Score=26.34 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELS-------AERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~-------elkdk~lR~~ADfeN~RKRt~kE 197 (310)
.|.+++.|.=.++ ..+......+..+++.|+.++..+.++++ ++...++.--.-.=|=+|.-.|+
T Consensus 127 ~i~el~d~~l~~~--------~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~ 198 (342)
T PF06632_consen 127 VIRELFDWCLDAN--------SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRE 198 (342)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445665543333 33333334444444444444444444444 34444444444445555555555
Q ss_pred HHHHHHH
Q 021637 198 RLSLVTN 204 (310)
Q Consensus 198 ~e~~~~~ 204 (310)
.......
T Consensus 199 lq~~L~~ 205 (342)
T PF06632_consen 199 LQRLLAS 205 (342)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 344
>PRK04325 hypothetical protein; Provisional
Probab=35.85 E-value=2.1e+02 Score=22.17 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=20.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+.++|..+.-.++-+++|...|...+++ +.++...+..+..|+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~-------I~~L~~ql~~L~~rl 53 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQT-------LDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34445544444444444444444444444 444445555555554
No 345
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.62 E-value=6.8e+02 Score=28.98 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCChhh-HHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 021637 130 LQSYKEALASNDDTK-AAEI-EALLKSFEDEKIDLERKVVNLSEELSAERARIL---RISADFDNFRKRTEKERL 199 (310)
Q Consensus 130 ~r~y~ea~~~~~~~~-~~e~-e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l---R~~ADfeN~RKRt~kE~e 199 (310)
-|+|+-.+.+....+ +.+. ..+.+.+-.+.-.|+.+-..|..++..+.+++. ...|+.+|.-|.+..|.+
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~e 446 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELE 446 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776543321 1121 122222222233333333334444444444433 334566666665555554
No 346
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.54 E-value=3.3e+02 Score=24.48 Aligned_cols=17 Identities=0% Similarity=0.014 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021637 183 ISADFDNFRKRTEKERL 199 (310)
Q Consensus 183 ~~ADfeN~RKRt~kE~e 199 (310)
+...|+++.+.+.+|.+
T Consensus 146 a~~~~e~~~~~~~~E~~ 162 (200)
T cd07624 146 LQDKLECANADLKADLE 162 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 347
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=35.46 E-value=1.7e+02 Score=31.66 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCCh---------hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSYKEALASNDD---------TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~---------~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+..+|.--++.++.++. +++.++..+-.-+..|+...++.-.+|++++.++.+.+.++.++...-|+.
T Consensus 302 EVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 302 EVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555543322 466666555555666666666666667777777777777777777665443
No 348
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=35.32 E-value=1.1e+02 Score=22.78 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 135 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 135 ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.|+..+|-.+...+-+.-++.-++..++...++.|+.|+..++
T Consensus 9 ~AiasGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 9 QAIASGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 6777777766666544444444445566666777777766554
No 349
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=35.16 E-value=3.3e+02 Score=28.07 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhcC---CChhhHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALAS---NDDTKAAEIEALLKSFEDEKI-DLERKVVNLSEELSAERARILRISAD-FDNFRKRTEKER 198 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~---~~~~~~~e~e~~l~~~~~E~~-~L~~el~~Le~el~elkdk~lR~~AD-feN~RKRt~kE~ 198 (310)
+-...+|+|....-.. ..+..+.-+-..+..+....+ +-+..|..|+++++++..++.++.+- +.-+-..-.+|+
T Consensus 100 ~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er 179 (478)
T PF11855_consen 100 PAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARER 179 (478)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 3445677776655432 344444444444444444322 33455566666666665555555542 233334445566
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhch
Q 021637 199 LSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (310)
Q Consensus 199 e~~~~~A~~~~ikdLLpVlDnLERAl~~~ 227 (310)
-...-+-...+..|+-.|-|||+..-..+
T Consensus 180 ~~~i~~la~~L~~DFr~V~~~~r~l~r~l 208 (478)
T PF11855_consen 180 ARQILQLARELPADFRRVEDNFRELDRAL 208 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788888888888887764443
No 350
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=35.15 E-value=3.1e+02 Score=23.99 Aligned_cols=27 Identities=4% Similarity=0.111 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 185 ADFDNFRKRTEKERLSLVTNAQGEVME 211 (310)
Q Consensus 185 ADfeN~RKRt~kE~e~~~~~A~~~~ik 211 (310)
++.+.++.+...+++..+..+...+-.
T Consensus 111 ~e~~~~~~~a~~~i~~e~~~a~~~l~~ 137 (174)
T PRK07352 111 EDMARLKQTAAADLSAEQERVIAQLRR 137 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333333333
No 351
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.04 E-value=3e+02 Score=28.83 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=5.7
Q ss_pred cceeecCCCeEee
Q 021637 295 SGFVKTWTTFLTR 307 (310)
Q Consensus 295 kGY~Lg~~~RVLR 307 (310)
||-.+|-.||=||
T Consensus 216 kgriigreGrnir 228 (514)
T TIGR03319 216 KGRIIGREGRNIR 228 (514)
T ss_pred hccccCCCcchHH
Confidence 3444444444444
No 352
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.94 E-value=2.1e+02 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=19.6
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNL--SEELSAERARILRISADFDNFR 191 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~L--e~el~elkdk~lR~~ADfeN~R 191 (310)
+.+.++...+...+.-+..++.++..| ..++..++-.+.++.-++..+.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444333333344444444444433 3333333333333333333333
No 353
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.75 E-value=2.2e+02 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
+++.++.|...+..++..+.++-.++..+.+..+
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 354
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=34.51 E-value=5.9e+02 Score=27.08 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
.-+.+-+.-|=+|+...-+-...+....+..+++.-+-|+..+..|...+.+|.+++..+...|+.-.+-+.-.+.++..
T Consensus 311 eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~ 390 (531)
T PF15450_consen 311 EELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKN 390 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33444555555555433333444445566666666667777888888888888888888888888766655444444332
Q ss_pred HHHHHHHHHhhh
Q 021637 204 NAQGEVMERLLQ 215 (310)
Q Consensus 204 ~A~~~~ikdLLp 215 (310)
-....+++.|+
T Consensus 391 -e~~~~~r~~le 401 (531)
T PF15450_consen 391 -EWESDERKSLE 401 (531)
T ss_pred -HHHHHHHHHHH
Confidence 33333333333
No 355
>PRK00846 hypothetical protein; Provisional
Probab=34.40 E-value=2.3e+02 Score=22.38 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+.+|+.++.-.+.-++++.+-+.+.+...+.+++.+.
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 356
>PRK14127 cell division protein GpsB; Provisional
Probab=34.34 E-value=1.2e+02 Score=25.44 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=19.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
+-...+.+..|+..|++++..|++++.+++.+..
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555556666666666666666666655444
No 357
>PRK14156 heat shock protein GrpE; Provisional
Probab=34.30 E-value=3.5e+02 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
+..++.++.+++.++.-+.++...++ .|...|.++.++......-
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~r---KR~~rE~e~~~~~a~~~~~ 80 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQ---RRANEERQQLQRYRSQDLA 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555 4555555555555544433
No 358
>PRK10698 phage shock protein PspA; Provisional
Probab=34.19 E-value=3.8e+02 Score=24.77 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 134 KEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 134 ~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
..|+..|++.-..+.=.+-.........|+.++...+..+..++..+.++...++.+|.|-.-=......--...=+...
T Consensus 76 ~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~ 155 (222)
T PRK10698 76 ELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQ 155 (222)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhH
Q 021637 214 LQVLDN 219 (310)
Q Consensus 214 LpVlDn 219 (310)
+--+|.
T Consensus 156 ~~~~~~ 161 (222)
T PRK10698 156 LDSGKL 161 (222)
T ss_pred HhCCCc
No 359
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.17 E-value=4.7e+02 Score=25.77 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=43.0
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
.++.++-+++..+.++..++..+|..|-.++.++...+.-+.-+.+-+|++...--+.+.++
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~ 219 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVEL 219 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777777777777888888887777777777777777777766554444433
No 360
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=33.93 E-value=3.4e+02 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELS 174 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~ 174 (310)
.+++++....+.++..++.++..+.+.+.
T Consensus 47 ~~le~~f~~~~~~lq~~~~el~~~~~kL~ 75 (170)
T COG2825 47 ADLESEFKKRQKELQKMQKELKAKEAKLQ 75 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555544444444443
No 361
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.87 E-value=1.7e+02 Score=23.85 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
..++..++.++..+..|++++..+++++.++...+.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555554443
No 362
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.84 E-value=32 Score=35.91 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELS 174 (310)
Q Consensus 159 ~~~L~~el~~Le~el~ 174 (310)
+++|++||++|+++++
T Consensus 33 ie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 33 IEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3444444444444444
No 363
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=33.63 E-value=88 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=16.8
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+++.|+.++..-.+.+..|+.++.+|++++...+
T Consensus 138 ~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~ 172 (308)
T PF06717_consen 138 YRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAIN 172 (308)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444444444444444444433
No 364
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.58 E-value=1.2e+02 Score=24.52 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elk 177 (310)
+++...+++++..+.+++..++
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 100 EKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444443333
No 365
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.41 E-value=3.5e+02 Score=24.10 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=7.8
Q ss_pred HHHHHhhhhhhHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERK 165 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~e 165 (310)
++..++...-++.+.|+.+
T Consensus 38 evk~~v~~~I~evD~Le~~ 56 (159)
T PF05384_consen 38 EVKEEVSEVIEEVDKLEKR 56 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 366
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=33.34 E-value=4.5e+02 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCeeecC------CCCCCC--CCCCc
Q 021637 245 YKQLVEILGSLGVVPVET------VGNPFD--PLVKP 273 (310)
Q Consensus 245 ~kqL~~vL~k~GVe~I~~------vGe~FD--Pn~HE 273 (310)
.++.+++|.-.++--+.| =|--|. |.+|.
T Consensus 258 ~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~ 294 (322)
T COG0598 258 QNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDW 294 (322)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCC
Confidence 344555555544433333 277777 66654
No 367
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.31 E-value=2.8e+02 Score=23.43 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
++.-.++++.+..++..++..+.-...|.++-++|+..+.-+.+.-..+-+|+.
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~ 61 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA 61 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 368
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.28 E-value=3.5e+02 Score=24.11 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021637 177 RARILRISADFDNFRKRTE 195 (310)
Q Consensus 177 kdk~lR~~ADfeN~RKRt~ 195 (310)
.+++..+..+.....+|..
T Consensus 162 ~~k~~~~~~ei~~~~~~~~ 180 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVE 180 (236)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665554
No 369
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=33.25 E-value=4.6e+02 Score=25.46 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKV 166 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el 166 (310)
..+++.-+..++.+...|++.+
T Consensus 98 ~~eLe~vLs~~q~KnekLke~L 119 (268)
T PF11802_consen 98 ISELEMVLSTVQSKNEKLKEDL 119 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544433
No 370
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=33.25 E-value=4.4e+02 Score=25.23 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
.++...++.+++..+.++...+++|.....+.+.++.+..++....-+.-.+
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~ 218 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQE 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999999998876655443
No 371
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.10 E-value=2.6e+02 Score=22.43 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021637 175 AERARILRISADFDNFRKRT 194 (310)
Q Consensus 175 elkdk~lR~~ADfeN~RKRt 194 (310)
++..+...++.|-.|...|+
T Consensus 50 ~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444
No 372
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.10 E-value=2.5e+02 Score=22.23 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+.=+.-+++.+..+++.|.++...++...+.+..+...++.+-.|...|+.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666666666666666666666654
No 373
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.09 E-value=2.3e+02 Score=23.57 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
+=+.+..+++++..+-+++.++|..+..+..+-..+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777666554433
No 374
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.04 E-value=2.8e+02 Score=28.34 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=37.9
Q ss_pred HHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLER----KVVNLSEELSAERARILRIS-----------ADFDNFRKRTEKERLSLVTNAQGEVME 211 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~----el~~Le~el~elkdk~lR~~-----------ADfeN~RKRt~kE~e~~~~~A~~~~ik 211 (310)
++.+....++.+++.|+. ++.-+.+.+.+.+.++.|+. .|..|+|.-+ ...++-..|-...-++
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeL-a~~EEK~~Yqs~eRaR 301 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQEL-ASMEEKMAYQSYERAR 301 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHh
Confidence 333444444444444433 33334444445555555544 4455554332 1233344455566677
Q ss_pred HhhhhhhHHHHHH
Q 021637 212 RLLQVLDNFERAK 224 (310)
Q Consensus 212 dLLpVlDnLERAl 224 (310)
|+-++++++.-=+
T Consensus 302 di~E~~Es~qtRi 314 (395)
T PF10267_consen 302 DIWEVMESCQTRI 314 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765544
No 375
>PHA00727 hypothetical protein
Probab=32.42 E-value=3.8e+02 Score=25.28 Aligned_cols=49 Identities=10% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 177 RARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 177 kdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
+.+|..+.||...-+|...+|+-+.+-....+-+..=|-..+..-..++
T Consensus 56 ~~qf~qlkael~kkkkk~kkekvdv~vkv~kkwinsrlftaehyvamlq 104 (278)
T PHA00727 56 KQQFEQLKAELSKKKKKFKKEKVDVRVKVVKKWINSRLFTAEHYVAMLQ 104 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcceeeehhHHHHhhhhccHHHHHHHHH
Confidence 3456677788888888888888777666666666555555554444443
No 376
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.25 E-value=3.5e+02 Score=23.78 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 021637 237 INNSYQSIYKQLVEIL 252 (310)
Q Consensus 237 l~~Gv~mi~kqL~~vL 252 (310)
+...++....++..+.
T Consensus 178 ~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 178 LLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3334444444444444
No 377
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.24 E-value=4.7e+02 Score=25.28 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 021637 162 LERKVVNLSEELSAERARILRISADFDNFRKRT-----EKERLSLVTNAQGEVMERLLQVLDNFE 221 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt-----~kE~e~~~~~A~~~~ikdLLpVlDnLE 221 (310)
++..|..+..++...+..+..+.+|-.|+--++ +=|+.+.+-.+.+++==.++.=++.||
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE 231 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLE 231 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344455555566666666666666665543333 333333444444444333333333333
No 378
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=31.95 E-value=4.1e+02 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=15.7
Q ss_pred hHhhhhHHHHHHHHHHHHHHhCCCeeec
Q 021637 234 EEKINNSYQSIYKQLVEILGSLGVVPVE 261 (310)
Q Consensus 234 ~~~l~~Gv~mi~kqL~~vL~k~GVe~I~ 261 (310)
.++++.-++-|.++|..+|..+|.....
T Consensus 137 IkKVv~~l~~vE~~L~~ll~~~g~~~~~ 164 (214)
T PF04344_consen 137 IKKVVNLLQEVEERLVQLLVIFGPEEEA 164 (214)
T ss_dssp HHHHHHHHHHHHHTTTTTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 4677788888889999999888876543
No 379
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.73 E-value=1.6e+02 Score=24.23 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
.+++.-.++-.+.|..-|..+|.+++++.+.+...+.+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666655555444443
No 380
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.62 E-value=2.4e+02 Score=22.71 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
.++.|.+.|..|..-++.|+++...|..++.+|-+-...+..+|+-
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777777777776666666666643
No 381
>PRK13411 molecular chaperone DnaK; Provisional
Probab=31.57 E-value=6.7e+02 Score=26.81 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhhhHHHHHHhc
Q 021637 206 QGEVMERLLQVLDNFERAKTQ 226 (310)
Q Consensus 206 ~~~~ikdLLpVlDnLERAl~~ 226 (310)
...--..+...++.++..+..
T Consensus 553 ~~~er~~i~~~l~~~~~wL~~ 573 (653)
T PRK13411 553 SEELKQRAEQKVEQLEAALTD 573 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 333334555556666666543
No 382
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.55 E-value=1.4e+02 Score=32.35 Aligned_cols=48 Identities=8% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
....++.+++.+..+|..+|+++..+++++|..+.+.+-|..-++.-.
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 345567788888888888899999999999999999888887766544
No 383
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.55 E-value=6.1e+02 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
++..|++.+++|.+.+.+...+-.++.++|.-+|+-...+..
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~ 215 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKN 215 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 455666777777777777777778899999998876666443
No 384
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.54 E-value=2.5e+02 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~AD 186 (310)
.+++..|++++.++++++.++...
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 385
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=31.30 E-value=82 Score=30.88 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=32.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
.....+..|+++....+.+|..|++++++++.++.-+....++|
T Consensus 135 ~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~y 178 (308)
T PF06717_consen 135 DFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRY 178 (308)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556777777777777778888888877777777777666665
No 386
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=31.08 E-value=4.1e+02 Score=24.14 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHHH
Q 021637 237 INNSYQSIYKQLVE 250 (310)
Q Consensus 237 l~~Gv~mi~kqL~~ 250 (310)
|.++.--+++++.+
T Consensus 195 ~~e~~ie~~k~~ie 208 (216)
T cd07627 195 YLESAIESQKELIE 208 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 33343333444333
No 387
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.99 E-value=6.9e+02 Score=26.78 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=11.8
Q ss_pred HHHHHHHHhhh-hhhHHHHHHh
Q 021637 205 AQGEVMERLLQ-VLDNFERAKT 225 (310)
Q Consensus 205 A~~~~ikdLLp-VlDnLERAl~ 225 (310)
...+++...+| +.|+|+++..
T Consensus 302 eA~~~V~~~~~~l~~~l~k~ke 323 (570)
T COG4477 302 EAKNVVEENLPILPDYLEKAKE 323 (570)
T ss_pred HHHHHHHhcCcchHHHHHHHHH
Confidence 34445555554 4577777753
No 388
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.90 E-value=7.1e+02 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=20.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk 179 (310)
++.++..++..+.+|+......|.+|+..+.+++..
T Consensus 30 r~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 30 RMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555565555555555555555555533
No 389
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=30.86 E-value=3.1e+02 Score=24.59 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSA 175 (310)
Q Consensus 161 ~L~~el~~Le~el~e 175 (310)
.|..+|.+.++.|..
T Consensus 48 sL~~Ki~ei~~kL~~ 62 (157)
T PF04778_consen 48 SLDAKITEITKKLEK 62 (157)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 390
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.80 E-value=2.6e+02 Score=28.24 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
..++...+..++.++..++.++..++.++++++.++.++...-..|+ +++|+.+...+.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~-~L~Re~~~~~~~ 370 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELT-QLNRDYEVNKSN 370 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHH
No 391
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.78 E-value=16 Score=30.03 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=11.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
..|..+..++..|..++..|+.++.+++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 392
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.76 E-value=4.4e+02 Score=24.45 Aligned_cols=8 Identities=0% Similarity=-0.271 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 021637 264 GNPFDPLV 271 (310)
Q Consensus 264 Ge~FDPn~ 271 (310)
..+.+|..
T Consensus 184 a~~l~~~~ 191 (246)
T TIGR03321 184 AFELPEEQ 191 (246)
T ss_pred cCCCCHHH
Confidence 33444433
No 393
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=30.72 E-value=2.1e+02 Score=27.59 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
.+.++..+++.++.+.....+-..-++..++|+++++..-.
T Consensus 51 ~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 51 KKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44556666666777777777777888888888888776544
No 394
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=30.68 E-value=1e+02 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~AD 186 (310)
+++.+..|++++.+.+.+.....++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEAR 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333
No 395
>PF13166 AAA_13: AAA domain
Probab=30.61 E-value=6.7e+02 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhCCCeeec
Q 021637 244 IYKQLVEILGSLGVVPVE 261 (310)
Q Consensus 244 i~kqL~~vL~k~GVe~I~ 261 (310)
..+.|.+.|..+|...+.
T Consensus 460 ~~~~iN~~L~~~g~~~~~ 477 (712)
T PF13166_consen 460 AADRINEELKRLGFSNFS 477 (712)
T ss_pred HHHHHHHHHHHhCCCCeE
Confidence 345666677777765543
No 396
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=30.58 E-value=4.3e+02 Score=24.32 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHhchhhcchhhH-hh-
Q 021637 169 LSEELSAERARILRISADFDN----FRKRTEKERLSLVTNAQGEVMERLL-----QVLDNFERAKTQIKVQTEGEE-KI- 237 (310)
Q Consensus 169 Le~el~elkdk~lR~~ADfeN----~RKRt~kE~e~~~~~A~~~~ikdLL-----pVlDnLERAl~~~~~~~e~~~-~l- 237 (310)
.++++..+...+..+...|.+ +...+++++..+.-....+++..-| -+++-+..++..++....... -+
T Consensus 104 ~~~~~~~~~~~l~~l~~~l~~~l~~l~~~ie~~Lv~Lal~ia~~vi~~el~~~~~~il~~v~~al~~lp~~~~~v~i~v~ 183 (246)
T PRK05687 104 GQAQAAPQAAQLQALAAQFQEPLALLDSVIESRLVQLALELARQVIGQELKTDPSAILAAIRELLQALPMFSGKPQLRVN 183 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHhccccCCCceEEEC
Confidence 333444444444444444444 4444555555566566666665544 255666667666542111100 00
Q ss_pred hhHHHHHHHHHHHHHHhCCCeee
Q 021637 238 NNSYQSIYKQLVEILGSLGVVPV 260 (310)
Q Consensus 238 ~~Gv~mi~kqL~~vL~k~GVe~I 260 (310)
-.-+..+...|...+...|+.-+
T Consensus 184 P~D~~~v~~~~~~~~~~~~~~l~ 206 (246)
T PRK05687 184 PDDLELVEQLLGAELSLHGWRLL 206 (246)
T ss_pred HHHHHHHHHHHhhHHHhCCeEEE
Confidence 12345566666666766776543
No 397
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.44 E-value=1.6e+02 Score=28.21 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
++++.++..|+++...|+.+...+..+..++|.-
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777776666666643
No 398
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.41 E-value=1.2e+02 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR 182 (310)
+|..+......|+.+|..|+++|-+++-.|+.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777888888888888888888887
No 399
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=30.35 E-value=2.2e+02 Score=20.84 Aligned_cols=15 Identities=20% Similarity=0.528 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021637 185 ADFDNFRKRTEKERL 199 (310)
Q Consensus 185 ADfeN~RKRt~kE~e 199 (310)
.|.+++|+|.+..++
T Consensus 26 ~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 26 QEIEELRQRYQAKRQ 40 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 567777777776665
No 400
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.34 E-value=1.3e+02 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk 179 (310)
...|++-|+++|.+|+++...++..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555433
No 401
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=30.31 E-value=2.6e+02 Score=21.60 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=42.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
++.+++.++.+..+...+--.++-+-.+.++++.++-..+.....+|++.+.+-+....
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55666666766666655555666677778888888888888888888887776655543
No 402
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.26 E-value=4.8e+02 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
.+.++|.+++.+.++.. ..+.+|++.|.+-..++..
T Consensus 181 ~~~~ev~~~e~kve~a~---~~~k~e~~Rf~~~k~~D~k 216 (243)
T cd07666 181 LLKEEIEKLEDKVECAN---NALKADWERWKQNMQTDLR 216 (243)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444444444443332 1233555555544444433
No 403
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=30.26 E-value=4.7e+02 Score=24.79 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN 239 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~ 239 (310)
+.+.+-|..+..=+.++..+.-.+..+++++.+=+ .+...-.-+|+.++||+......+.........++.
T Consensus 31 ~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~---------~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~ 101 (267)
T PF11887_consen 31 EQLGETLDDLNTLLATLNPRLPQLREDLRNLADVA---------DTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLL 101 (267)
T ss_pred hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhCC
Q 021637 240 SYQSIYKQLVEILGSLG 256 (310)
Q Consensus 240 Gv~mi~kqL~~vL~k~G 256 (310)
++..+......+|..++
T Consensus 102 ~~~~~a~~~~~~l~~n~ 118 (267)
T PF11887_consen 102 SATGLADTGTDFLADNR 118 (267)
T ss_pred HHHHHHHHHHHHHHHhH
No 404
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=30.24 E-value=4.1e+02 Score=27.97 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
-|+.+-......++-++.||+.+.|.--.|+++++..
T Consensus 482 lLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~ 518 (527)
T PF15066_consen 482 LLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSR 518 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3555555666678889999999988888888877643
No 405
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=30.15 E-value=3.3e+02 Score=30.42 Aligned_cols=43 Identities=23% Similarity=0.354 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 021637 184 SADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQ 226 (310)
Q Consensus 184 ~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~ 226 (310)
..|++++=.|+++-.+.-...+...++..|=.+++||..+...
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q 579 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQ 579 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC
Confidence 3556666666666666666677777777777777777766543
No 406
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.12 E-value=5.2e+02 Score=28.26 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred cCCchHHHHHHHHHHHHhcCCChhhHHHHHHHhhh--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 120 EAPTSFIMETLQSYKEALASNDDTKAAEIEALLKS--------------FEDEKIDLERKVVNLSEELSAERARILRISA 185 (310)
Q Consensus 120 ~~~~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~--------------~~~E~~~L~~el~~Le~el~elkdk~lR~~A 185 (310)
|+....-..+-...+..+.+.-+++-.+.+..... ......+|+.++..|+.+++..++++..+..
T Consensus 494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHh
Q 021637 186 DFDNFRKR-TEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 186 DfeN~RKR-t~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k 254 (310)
+.+.||+. .+.+.+ .+.|--||..+...+.-.++-..+=.-|.-.|...|..
T Consensus 574 ~~~~lr~~~~e~~~~-----------------~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~ 626 (697)
T PF09726_consen 574 ELQELRKYEKESEKD-----------------TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGD 626 (697)
T ss_pred HHHHHHHHHhhhhhh-----------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 407
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.89 E-value=2.2e+02 Score=23.04 Aligned_cols=30 Identities=3% Similarity=0.316 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+.++..++++++++.+.+..+.+.++.++.
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 408
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=29.80 E-value=2.2e+02 Score=27.00 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 164 RKVVNLSEELSAERARILRISADF-DNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADf-eN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
.++..+.++++.++..|.+...+| .||-+-.+.-..+. -.-+.+|++-.|-.++++..+.
T Consensus 81 ~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~--pew~~~Ir~~~~~~~~v~~r~~ 141 (257)
T PF11348_consen 81 DKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRH--PEWADIIRRAAPPAEDVRSRFS 141 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--hHHHHHHHhcCCCHHHHHhhcc
Confidence 455666677777777777777777 55555555555552 4466688888888888888764
No 409
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=1.7e+02 Score=31.42 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
++.+++++++++..++...+.+.+.+.+...+++ +..++.+--|+|+.-|+.+.+
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~----e~~~~~E~qR~rlr~elKe~K 162 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLK----ESNAAVEDQRRRLRDELKEYK 162 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhhHHHHHHHHHHHHHHH
No 410
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.70 E-value=5.6e+02 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSA 175 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~e 175 (310)
.+.++++++..+++++..++.++..++.+++-
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 103 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKF 103 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666533
No 411
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=29.63 E-value=8.9e+02 Score=29.76 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFER 222 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLER 222 (310)
.++.++...+..++.++..|+..+..|+.++......+.-+.-+.+-+++|.+ ++....+..--..++.|..-+-+|+-
T Consensus 1243 ~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q-~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1243 EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ-DLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHHHH
Q ss_pred HHhchhhcchhhHhhhhHHHHHHHHHHHHHHh
Q 021637 223 AKTQIKVQTEGEEKINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 223 Al~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k 254 (310)
-+..-........+...-++-..+.-++.|..
T Consensus 1322 el~~ke~~~~el~~~~~~~q~~~k~qld~l~~ 1353 (1822)
T KOG4674|consen 1322 ELEEKENLIAELKKELNRLQEKIKKQLDELNN 1353 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=29.59 E-value=2.2e+02 Score=25.08 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=28.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+++.++.|...+.+.|+..+++|.+|..+ +..|.|+..|-+
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q----~va~knLv~RN~ 42 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQ----QVAFKNLVQRNR 42 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34566677777888888877777776544 456788877654
No 413
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.57 E-value=2.6e+02 Score=21.52 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
+..+..|-..|..+.-.+..-++.|+.+.........+++++.
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333334444444444
No 414
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.44 E-value=2.8e+02 Score=30.66 Aligned_cols=42 Identities=10% Similarity=0.260 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
+..+++++++..++.+++.++++|.++.-++...|+....++
T Consensus 725 nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~l 766 (961)
T KOG4673|consen 725 NRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQEL 766 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555555555554444433
No 415
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=29.43 E-value=4.1e+02 Score=24.61 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 021637 196 KERLSLVTN 204 (310)
Q Consensus 196 kE~e~~~~~ 204 (310)
+|.+++.+|
T Consensus 135 ~e~EqLL~Y 143 (195)
T PF12761_consen 135 REFEQLLDY 143 (195)
T ss_pred HHHHHHHHH
Confidence 344444443
No 416
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=29.43 E-value=3.5e+02 Score=28.21 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhc--hhhcchh----
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQ--IKVQTEG---- 233 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~--~~~~~e~---- 233 (310)
..+++-+......+..-+.+.+.-.-+|+.+|.+...-+ ..+++++=.=|...-+|+++-=.+ .-...++
T Consensus 18 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~elr~~~~eik----~~~lenLd~~l~~~~~~v~~~Gg~vy~A~~aedA~~i 93 (459)
T COG1139 18 KQLREALRKAQDTLRANREKVLDELPDWEELRDLAREIK----LHVLENLDEYLEQLEENVTRNGGHVYFAKDAEDAREI 93 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHcCCEEEEeCCHHHHHHH
Confidence 345555556656655555555555667788776654433 344444444444444555442111 0001111
Q ss_pred ---------hHhhhhHHHHHH--HHHHHHHHhCCCeeecC-CCC
Q 021637 234 ---------EEKINNSYQSIY--KQLVEILGSLGVVPVET-VGN 265 (310)
Q Consensus 234 ---------~~~l~~Gv~mi~--kqL~~vL~k~GVe~I~~-vGe 265 (310)
.+.++++=.|+. =.|...|++.|++.+++ +|+
T Consensus 94 i~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE 137 (459)
T COG1139 94 IGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGE 137 (459)
T ss_pred HHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHH
Confidence 122333333443 45678999999999998 775
No 417
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.29 E-value=6.3e+02 Score=25.79 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERA 178 (310)
Q Consensus 163 ~~el~~Le~el~elkd 178 (310)
++....|+..++.+++
T Consensus 225 k~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 225 KESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 418
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.25 E-value=4.9e+02 Score=24.48 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
++.+...+++++......+...|+.+...+..|+.....+-..
T Consensus 158 KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~ 200 (230)
T cd07625 158 KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEE 200 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544444333
No 419
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=29.08 E-value=94 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.+.++|..++.++..+-|+|-.+.--++.|.++..
T Consensus 56 ~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 56 QVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556666666666666666666666666666554
No 420
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=28.97 E-value=3.5e+02 Score=23.83 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=27.0
Q ss_pred cCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 138 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 138 ~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
...+...-.++++ +..++.++.+...++.++-.+.+.+..++..+.++|-
T Consensus 80 P~~~~~~e~Ql~~-i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a 129 (139)
T KOG1510|consen 80 PGEEGSAEAQLEK-IKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIA 129 (139)
T ss_pred CCcccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 5566666666666666655555555555555555543
No 421
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=28.81 E-value=5.6e+02 Score=25.06 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHH
Q 021637 201 LVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEI 251 (310)
Q Consensus 201 ~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~v 251 (310)
....-.+.++..|--.++.+.--...+. .-.+|+.++..+...|.+-
T Consensus 302 ~~~~~R~~~l~~l~~ay~~y~el~~~l~----~G~~FY~dL~~~~~~l~~~ 348 (356)
T cd09237 302 SKQKLRKEFFEKLKKAYNSFKKFSAGLP----KGLEFYDDLLKMAKDLAKN 348 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555665555544432 1234666665555555443
No 422
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.78 E-value=7e+02 Score=28.76 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhhhHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVM------ERLLQVLDNFERAK 224 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~i------kdLLpVlDnLERAl 224 (310)
+|..+......|+..+..-+..+..++++.-++..|.++||.|-...-.--.-....+.+ ..+-.+.++.+|+.
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k 261 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAK 261 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHH
Q ss_pred hchhhcchhhHhhhhHHHHHHHHHHHHHHh
Q 021637 225 TQIKVQTEGEEKINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 225 ~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k 254 (310)
..+..-.++..++..-.+-+.++-.+...+
T Consensus 262 ~~~r~l~k~~~pi~~~~eeLe~~~~et~~~ 291 (1072)
T KOG0979|consen 262 KELRKLEKEIKPIEDKKEELESEKKETRSK 291 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhHHHhHHHH
No 423
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.62 E-value=2.4e+02 Score=21.97 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
..|+.++..++++++.++..+..+...+.+++..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666655655555544
No 424
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.51 E-value=4.4e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=13.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLS 170 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le 170 (310)
++..+.+++..+..++..|+.+|..++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 425
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=28.45 E-value=4e+02 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
..+..+..|+.++..+...+.++..|..|+|
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555556666666655
No 426
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=28.39 E-value=5.8e+02 Score=25.18 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=24.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRIS-------ADFDNFRKRTEKE 197 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~-------ADfeN~RKRt~kE 197 (310)
+.|.....+...|..+|+..+.+++..+.++..++ +||+.+-+++++-
T Consensus 126 ~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 126 AQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33444444445556666666666666655554443 4555544444443
No 427
>PF13166 AAA_13: AAA domain
Probab=28.38 E-value=7.3e+02 Score=26.23 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 166 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMER 212 (310)
Q Consensus 166 l~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikd 212 (310)
+..+...+.++...+.......+|+.+...+-....+.+.+..+..+
T Consensus 365 ~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (712)
T PF13166_consen 365 IDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKED 411 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555444444444444444333
No 428
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.28 E-value=4.1e+02 Score=23.34 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhch
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~ 227 (310)
..+.+...+..+.+++..++..+....-+-..|+=.+-.-...........++.-+..+++.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~ 80 (204)
T PF04740_consen 11 QAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFI 80 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444555555555544444333333366666666666666666677777777777777777443
No 429
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.27 E-value=2.5e+02 Score=21.29 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 166 VVNLSEELSAERARILRISADF 187 (310)
Q Consensus 166 l~~Le~el~elkdk~lR~~ADf 187 (310)
+..+++++++++.++.+++.+.
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 430
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.16 E-value=3e+02 Score=23.15 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=22.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
.+.+++..+..+-+++..|++.+.+|-++...|+-..
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666655554443
No 431
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.13 E-value=4.7e+02 Score=23.88 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHH
Q 021637 128 ETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLE 163 (310)
Q Consensus 128 ~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~ 163 (310)
.-+|.|.+... ..+.++.+.+.++..+.+++..|+
T Consensus 75 ~~LR~~q~~~r-~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 75 ERLRKSQEQER-ELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 233445555555555555544443
No 432
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.08 E-value=2e+02 Score=27.19 Aligned_cols=52 Identities=10% Similarity=0.252 Sum_probs=31.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.+..+|..+.....-..+|..+|..|+.++.+|+..+.+..-+.+.+++|-.
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444554444444444566777777777777777777776666666665543
No 433
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=28.07 E-value=4.4e+02 Score=25.36 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 021637 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLE 221 (310)
...++.+.+.++.+++.+....|+.+.+.+.+-... ...+..++-.-.++++..++
T Consensus 234 na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~-~~~~~~~~~~~~~~~~~~~~ 289 (304)
T PF02646_consen 234 NAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKS-YNKAVGSLEKRVGNIARRIE 289 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHH
Confidence 334444445555555555555555555444433332 22333333333444444333
No 434
>PRK14146 heat shock protein GrpE; Provisional
Probab=27.95 E-value=5e+02 Score=24.18 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
...++.++..++.++.+++.++.-+.++.+.++ .|...|.+++++......-.
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~r---kR~~kE~e~~~~~a~e~~~~ 108 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFK---RRSAQEFVSIRKEAVKSLVS 108 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777766666665555 45555666666665554443
No 435
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=27.82 E-value=1.1e+02 Score=29.73 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhHHHHHHhc
Q 021637 184 SADFDNFRKRTEKERLSLVTNA--QGEVMERLLQVLDNFERAKTQ 226 (310)
Q Consensus 184 ~ADfeN~RKRt~kE~e~~~~~A--~~~~ikdLLpVlDnLERAl~~ 226 (310)
..|+++++.|+++=.+ |+ ....+..|.||+|.|-.+...
T Consensus 144 ~~DW~~L~~r~~~L~e----fg~~~~~w~~~L~pIl~~fi~s~~~ 184 (299)
T PF14388_consen 144 REDWEKLLERLDRLKE----FGEEMEWWASLLRPILDRFIASFDG 184 (299)
T ss_pred HHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999998877665 55 889999999999999998754
No 436
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.75 E-value=5e+02 Score=27.43 Aligned_cols=22 Identities=5% Similarity=-0.004 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 171 EELSAERARILRISADFDNFRK 192 (310)
Q Consensus 171 ~el~elkdk~lR~~ADfeN~RK 192 (310)
.+...+.|++.|..++-+|--+
T Consensus 150 ~q~arYqD~larkr~~~e~e~q 171 (630)
T KOG0742|consen 150 QQRARYQDKLARKRYEDELEAQ 171 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888887777777433
No 437
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.61 E-value=1.5e+02 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILR 182 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR 182 (310)
+.|++++..|+.++..|+..+.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766654
No 438
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.59 E-value=3.1e+02 Score=22.95 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
..|+.++..|++.++.+...+..+...++.++..+.+
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544555555444443
No 439
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=27.56 E-value=4e+02 Score=22.90 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=12.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVN 168 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~ 168 (310)
+.++.++.+++++...|.++-..
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~ 45 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEA 45 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655555443333
No 440
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=27.47 E-value=3.8e+02 Score=25.10 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=4.8
Q ss_pred ccCCCccCCC
Q 021637 64 KFSPLASTGE 73 (310)
Q Consensus 64 ~~~~~~~~g~ 73 (310)
..-.|.+.|+
T Consensus 73 ~r~~FgrYGa 82 (225)
T KOG4848|consen 73 RRERFGRYGA 82 (225)
T ss_pred HHHHHHhhcc
Confidence 3344555554
No 441
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.46 E-value=3.5e+02 Score=25.20 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRI 183 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~ 183 (310)
+++++++..+++++++..+
T Consensus 73 km~~~qk~m~efq~e~~eA 91 (201)
T COG1422 73 KMKELQKMMKEFQKEFREA 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444433
No 442
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.40 E-value=1.8e+02 Score=25.66 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCC
Q 021637 206 QGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDE 285 (310)
Q Consensus 206 ~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee 285 (310)
++.++.+...-++.+.... +.+.+-++.+.+.+...+.+.||.++++-++ -=-.+-=++.... +...
T Consensus 44 lE~~l~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~kvgvvRYnAF~d-mGg~LSFslAlLD--~~~n 110 (151)
T PF14584_consen 44 LEDLLNELFDQIDELKEEL----------EELEKRIEELEEKLRNCVQKVGVVRYNAFED-MGGDLSFSLALLD--DNNN 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccceEEEEEccCccc-ccccceeeeEEEe--CCCC
Confidence 4455555544444444443 2344566778899999999999999998321 1123334455543 2333
Q ss_pred CCceeEE
Q 021637 286 FSQILNQ 292 (310)
Q Consensus 286 ~gtVv~V 292 (310)
|.|+.-
T Consensus 111 -GvVlts 116 (151)
T PF14584_consen 111 -GVVLTS 116 (151)
T ss_pred -EEEEEe
Confidence 666543
No 443
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=27.39 E-value=5.1e+02 Score=24.12 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhhhhhHHHHHHhchhh----cchhhHh
Q 021637 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMER---------------LLQVLDNFERAKTQIKV----QTEGEEK 236 (310)
Q Consensus 176 lkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikd---------------LLpVlDnLERAl~~~~~----~~e~~~~ 236 (310)
++..+.-+++=++|++.-..-.+..+...+.++-++. +.|---.|-.|+..... -.++...
T Consensus 94 LkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~~d~t~~~~~edi~~ 173 (199)
T KOG3221|consen 94 LKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSAGDETYDECIEDITS 173 (199)
T ss_pred HHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhcccchHHHHHHHHHH
Confidence 4444555666677777666555555555555554444 44444445555432110 0123456
Q ss_pred hhhHHHHHHHHHHHHHHhCCCee
Q 021637 237 INNSYQSIYKQLVEILGSLGVVP 259 (310)
Q Consensus 237 l~~Gv~mi~kqL~~vL~k~GVe~ 259 (310)
+..++..+.+++..+|+.+|+..
T Consensus 174 fl~~~~~~L~~i~~~l~~~~ld~ 196 (199)
T KOG3221|consen 174 FLSLLTPILKEIYFVLEQYGLDD 196 (199)
T ss_pred HHHHHHhhHHHHHHHHHHhcccc
Confidence 77888888999999999999764
No 444
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.35 E-value=3e+02 Score=26.13 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
|.-+..+.+..++++.+|++|+...+....-++.|.+++|+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777777666666666666666654
No 445
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.34 E-value=5.2e+02 Score=24.20 Aligned_cols=7 Identities=0% Similarity=-0.135 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 021637 204 NAQGEVM 210 (310)
Q Consensus 204 ~A~~~~i 210 (310)
.++..|+
T Consensus 206 ~~l~~fl 212 (234)
T cd07664 206 TVIIKYL 212 (234)
T ss_pred HHHHHHH
Confidence 3333333
No 446
>PRK00736 hypothetical protein; Provisional
Probab=27.19 E-value=2.8e+02 Score=21.05 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=16.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+.++|..+.-.++-+++|...|..-+++++.++
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555545555444444444444433
No 447
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.92 E-value=5.1e+02 Score=23.91 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
+.+.+.++++|+..|.+|-+....+-+-.
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~ag 32 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEGG 32 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666655555544443
No 448
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.90 E-value=4.7e+02 Score=23.50 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+++.++..........++.+.....++..++..+.++.-.++|+-
T Consensus 55 ~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs 99 (157)
T COG3352 55 DIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVS 99 (157)
T ss_pred HHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555555443
No 449
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.79 E-value=3e+02 Score=21.17 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=20.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+.++|..+.-.++-+++| .+.+......+.++.+....++.|+
T Consensus 9 Ri~~LE~~lafQe~tIe~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 9 RLAELESRLAFQEITIEEL-------NVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444 4444444444444445555555554
No 450
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.77 E-value=4.4e+02 Score=23.12 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELS------------AERARILRISADFDNFR 191 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~------------elkdk~lR~~ADfeN~R 191 (310)
..+...+..-++.+.+ .+.+.+......+......++++.+.+++.. ...+....+..+.++++
T Consensus 45 kPi~~~l~~R~~~I~~----~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~ 120 (167)
T PRK08475 45 KPLKNFYKSRINKISK----RLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI 120 (167)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021637 192 KRTEKERLSLVTNAQGEVMERLLQ 215 (310)
Q Consensus 192 KRt~kE~e~~~~~A~~~~ikdLLp 215 (310)
.+...+.+..+..++..+=.+++.
T Consensus 121 ~~a~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 121 KSFEELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 451
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.75 E-value=2.8e+02 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=7.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEE 172 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~e 172 (310)
.++..+++..+-|..++-|
T Consensus 29 ~~e~~l~ea~~~l~qMe~E 47 (79)
T PF05008_consen 29 EIERDLDEAEELLKQMELE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 452
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.74 E-value=4.3e+02 Score=23.07 Aligned_cols=51 Identities=29% Similarity=0.278 Sum_probs=35.6
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+.-.++.++..++.+.+.|+..|..|+.++.........+..|.+|.++=
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e 53 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE 53 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777777777777777777776654
No 453
>PF13514 AAA_27: AAA domain
Probab=26.68 E-value=8.2e+02 Score=27.89 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCC
Q 021637 237 INNSYQSIYKQLVEILGSLGV 257 (310)
Q Consensus 237 l~~Gv~mi~kqL~~vL~k~GV 257 (310)
+...+.....++..++..+|+
T Consensus 755 ~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 755 MEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 334444455555555565554
No 454
>PRK00846 hypothetical protein; Provisional
Probab=26.67 E-value=3.2e+02 Score=21.58 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=19.7
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
..+.++|..+.-.++-++.|.+.|.....+++.++.++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555554444444444433
No 455
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=26.62 E-value=2.5e+02 Score=20.33 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHH
Q 021637 209 VMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQ 247 (310)
Q Consensus 209 ~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kq 247 (310)
+.++-+-.+|...-|+.+.-.. .+...|.+|+..+.+.
T Consensus 24 lt~e~~~~l~~~~~al~~~~~~-~~e~afr~G~~d~l~~ 61 (64)
T PF12644_consen 24 LTKEDKKRLEEYIDALGARWGL-ESEEAFRQGFRDGLRL 61 (64)
T ss_pred cCHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHH
Confidence 3334444455555554432111 2355677887776554
No 456
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.40 E-value=1.4e+02 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDN 189 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN 189 (310)
++.++...|+.++.++.|+.+-
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 457
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.20 E-value=4.4e+02 Score=23.00 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021637 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (310)
Q Consensus 181 lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVl 217 (310)
..+..+.+.++.....+.+..+..+...+-..+..+.
T Consensus 104 ~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA 140 (173)
T PRK13460 104 EETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMT 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666555555555555554443
No 458
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.14 E-value=4.3e+02 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELS 174 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~ 174 (310)
+.+++..++.++..+++.+.
T Consensus 339 l~~~~~~~~~~l~~l~~~l~ 358 (451)
T PF03961_consen 339 LEEELEELKEELEKLKKNLK 358 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433
No 459
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=26.11 E-value=3.4e+02 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRISADF--------DNFRKRTEKERLS 200 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~ADf--------eN~RKRt~kE~e~ 200 (310)
+.+.+..++.++..|.-...|+.++. .+++.+...++..
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~ 71 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQE 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 34444445555555555555555543 3556666655554
No 460
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=26.11 E-value=2e+02 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
++++++..-+.|+..|+.++..+......+
T Consensus 98 kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 98 KLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555444445555554444444444333
No 461
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=4.8e+02 Score=25.75 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
..+...+++-++.|..++..+.+++..-+++|-+.+++..|-
T Consensus 128 d~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 128 DDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666677777777777777777777777665
No 462
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.06 E-value=3.6e+02 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
....|.+.+.+++...+++++++++++
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 463
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=25.98 E-value=1.2e+02 Score=33.67 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQ 247 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kq 247 (310)
-+.++..+++..|..+.+...|..|..++-.+.+. +|=..+|.++.-+.+ .+++..+.+-|-+.
T Consensus 196 ~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~---------elq~a~~el~~~l~~-------ae~~~~~w~pvgdl 259 (966)
T KOG4286|consen 196 LLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQ---------ELQEATDELDLKLRQ-------AEVIKGSWQPVGDL 259 (966)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH---------HHHHHHHHHHHhhhH-------HHhhhhccccHHHH
Confidence 45555566666666666666666666555544322 222223333333221 23445556666666
Q ss_pred HHHHHHhCCCeeecCCCCCCCC
Q 021637 248 LVEILGSLGVVPVETVGNPFDP 269 (310)
Q Consensus 248 L~~vL~k~GVe~I~~vGe~FDP 269 (310)
|.+-|..+ +++|...-+.|+|
T Consensus 260 ~idsl~~h-~e~~~~~~~ei~p 280 (966)
T KOG4286|consen 260 LIDSLQDH-LEKVKALRGEIAP 280 (966)
T ss_pred HHhHHHHH-HHHHHHHHhhcch
Confidence 66655543 3444444444554
No 464
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=25.96 E-value=2.4e+02 Score=30.58 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISAD------------FDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~AD------------feN~RKRt~kE~e~~~~~ 204 (310)
....|+++|+++++++.+++-.+.++.|+ .+-.++++++-.+++.+.
T Consensus 637 smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl 695 (759)
T KOG0981|consen 637 SMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKL 695 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888887765 345555555554444433
No 465
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=2.5e+02 Score=24.00 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=16.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
++-|..|+..++..|..++++....++.+..+++.|
T Consensus 78 lefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 78 LEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444433
No 466
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.95 E-value=2.3e+02 Score=23.18 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~l 181 (310)
++.|.+.+..+++.+..+++++.
T Consensus 95 ~~~l~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 95 IEELEKAIEKLQEALAELASRAQ 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443333
No 467
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.93 E-value=1.1e+03 Score=27.67 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk 179 (310)
+..+..++...++.|+.++++++..
T Consensus 825 ~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 825 LTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 468
>PRK14149 heat shock protein GrpE; Provisional
Probab=25.63 E-value=5.3e+02 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
++.++.+++.++.-+.++...++ .|...|.+++++......-
T Consensus 48 l~~e~~elkd~~lR~~AefEN~r---KR~~kE~e~~~~~a~~~~~ 89 (191)
T PRK14149 48 FELKYKEMHEKYLRVHADFENVK---KRLERDKSMALEYAYEKIA 89 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444 4555566666655544443
No 469
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.48 E-value=2.3e+02 Score=21.51 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~l 181 (310)
+..+++++..++.+.++|+.+..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 470
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.47 E-value=6.2e+02 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHH------HhcCCChhhHHHHHHHhhhh
Q 021637 123 TSFIMETLQSYKE------ALASNDDTKAAEIEALLKSF 155 (310)
Q Consensus 123 ~~~~~~~~r~y~e------a~~~~~~~~~~e~e~~l~~~ 155 (310)
+..+..+++-|.- .+...+...+.++.++|.+.
T Consensus 37 ~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~ 75 (258)
T PF15397_consen 37 ALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEW 75 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4455666666542 22334555555555444433
No 471
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.44 E-value=7.8e+02 Score=25.58 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=6.5
Q ss_pred CCCCCceeeeee
Q 021637 268 DPLVKPRVGLKI 279 (310)
Q Consensus 268 DPn~HEAV~~~~ 279 (310)
||.++.||...+
T Consensus 446 d~~v~~~l~~l~ 457 (582)
T PF09731_consen 446 DELVDAALSSLP 457 (582)
T ss_pred ChHHHHHHHhcC
Confidence 555555555554
No 472
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.43 E-value=5.2e+02 Score=23.54 Aligned_cols=66 Identities=11% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 130 LQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 130 ~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
++.|=-.+-.++-.-+..+..++..+.......+..+.++..+...+.+-+..+..+.+++++.+.
T Consensus 14 iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 14 IKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444455566666777777777766666777777777777777777777788877777664
No 473
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.34 E-value=2.5e+02 Score=23.11 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
++....-+++.++.|++.+.++++++..+++++....+.++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=25.31 E-value=22 Score=29.55 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
+.+++.....+.++...|+.++..|+.++.++++++.-+...-.+
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------------------HT-
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 475
>PF14182 YgaB: YgaB-like protein
Probab=25.24 E-value=3.6e+02 Score=21.60 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDE--KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E--~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
.+..+++.++..++++ ...++.+|...+++++++...+.+---+.-+--++.++
T Consensus 24 ERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~sy~~~~~ 79 (79)
T PF14182_consen 24 ERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEKQTEEVIRSYQSEEK 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 476
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.09 E-value=5.3e+02 Score=23.50 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAE-------------------RARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~el-------------------kdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
+..-..++..+..+++...+.++.+.+.++++.+. .+-...++.+.+.+......+.+..+
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek 157 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKER 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHH
Q 021637 203 TNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSY 241 (310)
Q Consensus 203 ~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv 241 (310)
..+...+-.++..+.-.+-..+-.-....+....+++.+
T Consensus 158 ~~a~~~Lk~ei~~lAv~iA~kiL~k~ld~~~~~~lI~~~ 196 (205)
T PRK06231 158 RELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEF 196 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
No 477
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=25.05 E-value=5.7e+02 Score=23.83 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhch
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~ 227 (310)
+...++.+.+++......+...+..+..+...+.-+..|++|+.++..+-.. +--.+.++.++.+...
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~------------~~~~l~~~t~~t~~~a 89 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSR------------KAQQLNNNTERTLQRA 89 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q ss_pred hhcchhhHhhhhHHHHHHHHHHHHHHhCC
Q 021637 228 KVQTEGEEKINNSYQSIYKQLVEILGSLG 256 (310)
Q Consensus 228 ~~~~e~~~~l~~Gv~mi~kqL~~vL~k~G 256 (310)
.....++..+..-...+..-+..+|
T Consensus 90 ----~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 90 ----QDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhC
No 478
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=25.04 E-value=4.7e+02 Score=22.91 Aligned_cols=78 Identities=9% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
+++--..+.+.++..++...+.++...+++.++..+..+.+.+.....++.+..+...+.+.-.+.=.+.......++
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie 128 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELME 128 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.95 E-value=3.2e+02 Score=21.42 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
..|..=|..|+.++..++-.|..+++.+..+..-..+..-.....-+..+++.|
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~m 66 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRM 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHH
No 480
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.92 E-value=4.5e+02 Score=22.62 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 140 NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 140 ~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
++...+..+-.....++..+......|..|++++......|.+..+..+.|++.++......+.
T Consensus 17 ~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 17 EDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.88 E-value=4.8e+02 Score=22.95 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
..+-+.-..+.++...+..+|..|+.++.+.+ ..+....+.++-||=..-=---+..+.+..++=.|-.-.|+++.+
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~-lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~-- 94 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHK-LVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKV-- 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHH--
Q ss_pred chhhcchhhHhhhhHHHHHHHHHHHHHHhCCCeee
Q 021637 226 QIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPV 260 (310)
Q Consensus 226 ~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I 260 (310)
...+.+-+.-.-+.|.++=++|.|..+
T Consensus 95 --------i~~l~~qL~~k~kElnkfk~~hkIrv~ 121 (140)
T KOG4098|consen 95 --------IKKLTDQLVQKGKELNKFKKDHKIRVV 121 (140)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhcceeee
No 482
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=24.86 E-value=7.3e+02 Score=25.03 Aligned_cols=125 Identities=6% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSY--KEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 125 ~~~~~~r~y--~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
+|..|++.+ +.-....-..-+.=++..-..+.+=..+|+.-+...+.-....++-+........++..-+........
T Consensus 221 qC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~ 300 (412)
T PF04108_consen 221 QCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELR 300 (412)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHH
Q 021637 203 TNAQ-----GEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLV 249 (310)
Q Consensus 203 ~~A~-----~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~ 249 (310)
.+.. -..+.++-..+.++...+...-..-.....++.+|...|+.++
T Consensus 301 ~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL 352 (412)
T PF04108_consen 301 KFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLL 352 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.84 E-value=2.2e+02 Score=23.56 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhcCCC--hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 122 PTSFIMETLQSYKEALASND--DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 122 ~~~~~~~~~r~y~ea~~~~~--~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
+...++..+..+........ ......++..+..++.++..|++.+..|+..+..+.+++
T Consensus 57 ~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 57 SLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred CHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 484
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.80 E-value=7.3e+02 Score=25.03 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL----- 199 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e----- 199 (310)
.++..++..+..+..........-......+..++.+++.++..+.....+-.-++..+.+..++++++..++..
T Consensus 222 ~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~ 301 (498)
T TIGR03007 222 EAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGG 301 (498)
T ss_pred HHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccC
Q ss_pred ---------------------HHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhC
Q 021637 200 ---------------------SLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSL 255 (310)
Q Consensus 200 ---------------------~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~ 255 (310)
+..-.+.+.-+..|-..++.++.-+..++........+..-++...+.+...+.++
T Consensus 302 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 302 PERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.71 E-value=5.8e+02 Score=23.84 Aligned_cols=134 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
.+....+.+.+.+..+.....++.-..-..---+....+.. ..+++.-+.++|.|+...+...++.....
T Consensus 52 ~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~----------~~e~~~~li~~~~~~~~~~~~~~e~qLv~ 121 (234)
T COG1317 52 ELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR----------VLERLAKLIAEFQAELEALKEVVEKQLVQ 121 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhHH--HHHHhchhhcchhhHhhh---------hHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCC
Q 021637 205 AQGEVMERLLQVLDNF--ERAKTQIKVQTEGEEKIN---------NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVK 272 (310)
Q Consensus 205 A~~~~ikdLLpVlDnL--ERAl~~~~~~~e~~~~l~---------~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~H 272 (310)
..-.+++.+|-..+.+ +.-+..+...-.....+. .-|.+|.++|.+++.-+|-. +.-++ ||++|
T Consensus 122 lvl~ia~~Vi~~~~~~~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~~~~-l~l~~---D~~l~ 196 (234)
T COG1317 122 LVLEIARKVIGKELELDPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLLGWR-LELVA---DPALS 196 (234)
T ss_pred HHHHHHHHHHhHHHhcCHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhcchh-eeecc---CCCCC
No 486
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.68 E-value=5.8e+02 Score=26.67 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchh
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEG 233 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~ 233 (310)
...+-.+.++.+...-.+.+...+.++..++.+|++|..-+..|+=.+...-+.- +.|.+-+|-.+
T Consensus 140 ~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f----~vp~Fqsl~~~---------- 205 (460)
T KOG3771|consen 140 SARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGF----FVPTFQSLFNL---------- 205 (460)
T ss_pred HHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hcchHHHHHHH----------
Q ss_pred hHhhhhHHHHHHHHHHHHHHhCC
Q 021637 234 EEKINNSYQSIYKQLVEILGSLG 256 (310)
Q Consensus 234 ~~~l~~Gv~mi~kqL~~vL~k~G 256 (310)
...|+.-+.-+|++|..++.+++
T Consensus 206 q~vf~~Emskl~~~L~~v~~kl~ 228 (460)
T KOG3771|consen 206 QLVFHKEMSKLYKNLYDVLDKLF 228 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 487
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=24.65 E-value=3.8e+02 Score=21.67 Aligned_cols=78 Identities=9% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhhHHHHHH
Q 021637 166 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIY 245 (310)
Q Consensus 166 l~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~Gv~mi~ 245 (310)
..+++.++.+|-.+|- ...+|..|+.......++.+ .....++..|-.|...|.-.+.... .......+-|..++
T Consensus 18 ~~e~~~~l~~Wa~~~~-v~~~~~~f~~~~~~~~~~~~-~~~~~vi~~L~~a~~~l~~I~~n~~---lT~~q~~~~I~~l~ 92 (113)
T PF02520_consen 18 KAEIEEQLDEWAEKYG-VQDQYNEFKAQVQAQKEEVR-KNVTAVISNLSSAFAKLSAILDNKS---LTRQQQQEAIDALR 92 (113)
T ss_pred HHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcc---cCHHHHHHHHHHHH
Q ss_pred HHH
Q 021637 246 KQL 248 (310)
Q Consensus 246 kqL 248 (310)
+++
T Consensus 93 ~~~ 95 (113)
T PF02520_consen 93 KQY 95 (113)
T ss_pred HHC
No 488
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=24.54 E-value=2e+02 Score=25.01 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhHH
Q 021637 173 LSAERARILRISADFDNFRKRTEKERLSLVTNA--QGEVMERLLQVLDNF 220 (310)
Q Consensus 173 l~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A--~~~~ikdLLpVlDnL 220 (310)
++.++.|+.++++.|.-+=++.+-+.+.+...- +..++..-|.|+|.+
T Consensus 14 ~e~yR~Kl~~~k~~F~~vW~~VK~~ve~~i~~~~~q~~LL~~AL~v~~ki 63 (132)
T PF10360_consen 14 FEHYRSKLSASKASFGEVWETVKGQVEEAIDPNEAQRNLLENALSVFDKI 63 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
No 489
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=24.48 E-value=4.2e+02 Score=22.16 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 130 LQSYKEALASNDDTKAAEIEALLK--SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (310)
Q Consensus 130 ~r~y~ea~~~~~~~~~~e~e~~l~--~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~ 207 (310)
+.-|++ .+...+..+|..+. ....+++.|.+.+..+-+++.++..+.. +..
T Consensus 28 f~efKd----~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k-----------------------~qg 80 (102)
T PF01519_consen 28 FDEFKD----SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQK-----------------------AQG 80 (102)
T ss_dssp HHHH-------HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHH
T ss_pred HHHHhh----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHH
Q ss_pred HHHHHhhhhhhHHHHHHhch
Q 021637 208 EVMERLLQVLDNFERAKTQI 227 (310)
Q Consensus 208 ~~ikdLLpVlDnLERAl~~~ 227 (310)
+-+.-++..+++|..-|..+
T Consensus 81 ktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 81 KTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
No 490
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.46 E-value=1.1e+02 Score=19.08 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSA 175 (310)
Q Consensus 158 E~~~L~~el~~Le~el~e 175 (310)
|.+.++.+|..|+.++.+
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
No 491
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.41 E-value=3.3e+02 Score=20.88 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
++.-.+.....+..|.+....++..+-.++.+|++++-.+..+.+.++.
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 492
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.40 E-value=2.6e+02 Score=23.19 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 153 ~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+.+...+..+++++..+.++++.++.++....++...+|+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.40 E-value=2.6e+02 Score=23.12 Aligned_cols=41 Identities=15% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
..+...+..+++++..+.++++.+++.+...++++..++.|
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.38 E-value=3.1e+02 Score=30.83 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred cCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021637 138 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (310)
Q Consensus 138 ~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVl 217 (310)
.+.-..+...++.++..++.++......++++.+++..++ ++||-+|+-|-...-+.
T Consensus 843 ~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~-----~qadse~l~ka~~~~k~------------------ 899 (970)
T KOG0946|consen 843 EKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE-----AQADSETLSKALKTVKS------------------ 899 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH-----HhhcchHHHHHHHHhhc------------------
Q ss_pred hHHHHHHhchhhcchhhHhhhhHHHHHHHHHHHHHHhCC
Q 021637 218 DNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLG 256 (310)
Q Consensus 218 DnLERAl~~~~~~~e~~~~l~~Gv~mi~kqL~~vL~k~G 256 (310)
||++.-+...+.+++..--+...++-...++.+.++++|
T Consensus 900 ~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 900 ENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred ccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhC
No 495
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.24 E-value=6.6e+02 Score=24.36 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcc
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT 231 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~ 231 (310)
+..+..|...|.+++..+..++.++--+..+..-+..+--....++.... ..-+.+|+.-++.|..+...+....
T Consensus 9 l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~-----~~~l~~L~~~l~~L~~~~~~f~~~~ 83 (338)
T PF04124_consen 9 LESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSL-----SDSLDSLLDSLPELDEACQRFSSKA 83 (338)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHhhhhHHHHHHHHHHHHHH
Q 021637 232 EGEEKINNSYQSIYKQLVEILG 253 (310)
Q Consensus 232 e~~~~l~~Gv~mi~kqL~~vL~ 253 (310)
.....-.+-...+..+..++++
T Consensus 84 ~~~~~~r~~~~~~l~~~~~l~d 105 (338)
T PF04124_consen 84 QKISEERKKASLLLENHDRLLD 105 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 496
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.17 E-value=1.7e+02 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+..++.+++.|++++.+++.++.....+.++++++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=24.13 E-value=9.3e+02 Score=26.03 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLE 221 (310)
++.+..|..++.+.+.+.+...+...+|+.++.+..+.+.-..++++..+.-..+=.+ ...++... ++.++..++.|-
T Consensus 420 ~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~-~~e~~~~e-~~e~~~al~el~ 497 (607)
T KOG0240|consen 420 TERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQE-ENEAAKDE-VKEVLTALEELA 497 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHH
Q ss_pred HHHhchhhcchhhHhhh----------------hHHHHHHHHHHHHHHhCCCee
Q 021637 222 RAKTQIKVQTEGEEKIN----------------NSYQSIYKQLVEILGSLGVVP 259 (310)
Q Consensus 222 RAl~~~~~~~e~~~~l~----------------~Gv~mi~kqL~~vL~k~GVe~ 259 (310)
-.......+.++.-+.. .++.++..++..-+...|...
T Consensus 498 ~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~ 551 (607)
T KOG0240|consen 498 VNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKI 551 (607)
T ss_pred HhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccc
No 498
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.11 E-value=5.2e+02 Score=23.23 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERAR-----ILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk-----~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
++.-+.-++...+.+.++|.+|++.++.+.|+ +|.-..|+|++..++++--..+.+
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
No 499
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=24.07 E-value=3.7e+02 Score=28.19 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+|..++-.|-++--.+ ..++..+-..-.-....|..+|.+|++.|.+.++.+-...+-.=|--+|+++
T Consensus 511 aMq~EL~mWrse~rq~-----~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk 578 (583)
T KOG3809|consen 511 AMQKELEMWRSEQRQN-----EQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQK 578 (583)
T ss_pred HHHHHHHHHHHHHHHh-----HHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
No 500
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=24.05 E-value=4.2e+02 Score=24.00 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD-NFRKRTE 195 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe-N~RKRt~ 195 (310)
.+.+|..++..++++...|+.+-..|-..+...++--..+..+.= -++||.+
T Consensus 108 t~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~fq 160 (166)
T PF06193_consen 108 TKDNIIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKKFQ 160 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!