Query 021637
Match_columns 310
No_of_seqs 207 out of 1151
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 5.6E-44 1.9E-48 324.1 17.2 147 159-309 61-207 (213)
2 1dkg_A Nucleotide exchange fac 100.0 1.4E-43 4.6E-48 318.4 14.7 144 160-309 45-188 (197)
3 3a6m_A Protein GRPE, HSP-70 co 100.0 3.5E-44 1.2E-48 317.5 8.2 152 149-309 11-162 (177)
4 2v71_A Nuclear distribution pr 95.1 0.99 3.4E-05 40.0 15.5 81 147-227 46-128 (189)
5 2v71_A Nuclear distribution pr 93.7 3.5 0.00012 36.5 16.3 130 124-254 6-145 (189)
6 3swy_A Cyclic nucleotide-gated 91.5 1 3.6E-05 31.3 7.5 41 161-201 2-42 (46)
7 2v66_B Nuclear distribution pr 91.3 5.2 0.00018 32.6 14.1 71 157-227 3-75 (111)
8 3swf_A CGMP-gated cation chann 91.0 1.5 5.1E-05 33.4 8.6 46 161-206 4-49 (74)
9 3he5_A Synzip1; heterodimeric 89.8 1.1 3.7E-05 30.7 6.2 44 145-195 5-48 (49)
10 3plt_A Sphingolipid long chain 89.6 5.6 0.00019 36.3 12.8 98 152-249 113-219 (234)
11 2avr_X Adhesion A; antiparalle 89.6 3.5 0.00012 34.0 10.4 73 139-223 23-104 (119)
12 3etw_A Adhesin A; antiparallel 89.1 4.5 0.00015 33.3 10.7 37 176-224 69-105 (119)
13 3na7_A HP0958; flagellar bioge 88.1 6.6 0.00023 35.4 12.3 48 149-196 31-78 (256)
14 1jcd_A Major outer membrane li 86.3 3.4 0.00012 29.3 7.3 48 142-189 3-50 (52)
15 3hnw_A Uncharacterized protein 85.7 5.6 0.00019 33.2 9.7 48 145-192 77-124 (138)
16 1t2k_D Cyclic-AMP-dependent tr 84.3 2 7E-05 30.8 5.5 38 143-180 22-59 (61)
17 2jee_A YIIU; FTSZ, septum, coi 83.2 7.6 0.00026 30.0 8.6 19 176-194 53-71 (81)
18 2yy0_A C-MYC-binding protein; 82.6 2 6.8E-05 30.5 4.7 29 152-180 21-49 (53)
19 1uix_A RHO-associated kinase; 82.5 14 0.00047 27.9 10.5 61 150-211 4-64 (71)
20 3nmd_A CGMP dependent protein 81.9 4.2 0.00014 30.8 6.5 47 145-191 21-67 (72)
21 1hjb_A Ccaat/enhancer binding 81.8 6.3 0.00021 30.7 7.7 52 128-183 25-76 (87)
22 4etp_A Kinesin-like protein KA 80.7 4.2 0.00014 39.4 7.9 55 144-202 4-58 (403)
23 3cve_A Homer protein homolog 1 80.5 16 0.00055 27.5 9.3 51 149-199 6-56 (72)
24 3tnu_A Keratin, type I cytoske 80.5 22 0.00075 28.9 11.5 63 144-206 39-101 (131)
25 3tnu_B Keratin, type II cytosk 79.9 23 0.00078 28.7 12.7 79 142-220 35-115 (129)
26 3na7_A HP0958; flagellar bioge 79.5 34 0.0012 30.6 15.7 19 243-261 179-197 (256)
27 2wt7_A Proto-oncogene protein 79.2 4.9 0.00017 29.0 6.0 37 144-180 24-60 (63)
28 1ci6_A Transcription factor AT 78.8 5.1 0.00018 29.0 6.0 37 143-179 23-59 (63)
29 3hnw_A Uncharacterized protein 77.8 5.6 0.00019 33.3 6.7 46 150-195 68-113 (138)
30 1ic2_A Tropomyosin alpha chain 76.6 8 0.00027 29.1 6.8 28 165-192 21-48 (81)
31 4ani_A Protein GRPE; chaperone 75.9 23 0.00077 31.7 10.6 50 145-197 61-110 (213)
32 3u1c_A Tropomyosin alpha-1 cha 75.2 15 0.00053 28.8 8.4 31 154-184 41-71 (101)
33 4emc_A Monopolin complex subun 75.2 15 0.00051 32.5 9.0 36 152-187 22-57 (190)
34 2dfs_A Myosin-5A; myosin-V, in 74.8 21 0.00073 38.8 12.0 48 151-198 971-1018(1080)
35 1jnm_A Proto-oncogene C-JUN; B 74.5 2.8 9.5E-05 30.2 3.5 38 143-180 22-59 (62)
36 2xv5_A Lamin-A/C; structural p 74.4 18 0.0006 27.2 8.0 47 156-202 4-53 (74)
37 1wt6_A Myotonin-protein kinase 74.1 11 0.00039 29.0 7.0 44 153-196 27-70 (81)
38 3u59_A Tropomyosin beta chain; 73.4 20 0.00067 28.0 8.6 44 151-194 10-53 (101)
39 3mq7_A Bone marrow stromal ant 71.5 11 0.00039 30.9 6.8 41 155-195 62-102 (121)
40 1gu4_A CAAT/enhancer binding p 71.5 15 0.0005 28.0 7.0 48 128-179 25-72 (78)
41 1x8y_A Lamin A/C; structural p 71.0 32 0.0011 26.2 9.4 44 158-201 29-75 (86)
42 3cvf_A Homer-3, homer protein 70.7 19 0.00064 27.6 7.5 40 152-191 15-54 (79)
43 3htk_A Structural maintenance 70.2 22 0.00075 24.8 7.4 49 152-200 7-55 (60)
44 3ra3_A P1C; coiled coil domain 69.6 4.5 0.00015 24.7 3.0 24 154-177 4-27 (28)
45 3trt_A Vimentin; cytoskeleton, 69.5 30 0.001 25.3 8.4 40 152-191 37-76 (77)
46 3etw_A Adhesin A; antiparallel 67.7 50 0.0017 27.1 10.1 18 146-163 5-22 (119)
47 3mq7_A Bone marrow stromal ant 67.6 23 0.00077 29.2 7.8 40 156-195 70-109 (121)
48 1s1c_X RHO-associated, coiled- 67.2 37 0.0013 25.4 10.1 61 148-211 4-64 (71)
49 3swk_A Vimentin; cytoskeleton, 67.1 34 0.0012 26.2 8.4 64 160-225 3-66 (86)
50 3jsv_C NF-kappa-B essential mo 67.0 45 0.0015 26.3 9.3 58 145-204 11-71 (94)
51 3q8t_A Beclin-1; autophagy, AT 66.8 43 0.0015 26.1 10.6 45 145-189 6-50 (96)
52 2jee_A YIIU; FTSZ, septum, coi 66.3 42 0.0014 25.7 9.9 36 156-191 12-47 (81)
53 1ic2_A Tropomyosin alpha chain 65.7 28 0.00095 26.1 7.6 23 159-181 43-65 (81)
54 3vkg_A Dynein heavy chain, cyt 65.7 28 0.00095 42.4 11.1 51 143-193 2014-2064(3245)
55 3a7p_A Autophagy protein 16; c 64.7 42 0.0014 28.6 9.2 50 144-193 69-118 (152)
56 3ol1_A Vimentin; structural ge 64.4 54 0.0019 26.3 13.9 34 147-180 24-57 (119)
57 3u06_A Protein claret segregat 64.0 18 0.00062 35.2 7.8 53 146-202 6-58 (412)
58 3oja_B Anopheles plasmodium-re 63.8 75 0.0026 30.9 12.4 14 242-255 568-581 (597)
59 2yy0_A C-MYC-binding protein; 63.4 12 0.0004 26.4 4.7 31 143-173 19-49 (53)
60 1t3j_A Mitofusin 1; coiled coi 63.0 26 0.0009 27.7 7.2 25 168-192 68-92 (96)
61 3q8t_A Beclin-1; autophagy, AT 62.7 33 0.0011 26.7 7.8 47 147-193 22-68 (96)
62 2dfs_A Myosin-5A; myosin-V, in 62.1 46 0.0016 36.2 11.3 47 149-195 976-1022(1080)
63 1g6u_A Domain swapped dimer; d 62.1 25 0.00086 23.8 5.9 23 159-181 22-44 (48)
64 2zqm_A Prefoldin beta subunit 61.1 20 0.00067 27.9 6.3 30 163-192 76-105 (117)
65 3aco_A Pacsin2, protein kinase 61.0 1E+02 0.0035 28.3 13.6 140 157-298 192-340 (350)
66 3ghg_A Fibrinogen alpha chain; 60.5 38 0.0013 34.3 9.5 18 244-261 177-194 (562)
67 3ol1_A Vimentin; structural ge 60.4 64 0.0022 25.8 10.8 67 156-224 19-85 (119)
68 3oja_A Leucine-rich immune mol 59.9 60 0.0021 31.0 10.7 13 213-225 454-466 (487)
69 4dzn_A Coiled-coil peptide CC- 59.8 18 0.00062 22.8 4.5 17 161-177 6-22 (33)
70 3a7p_A Autophagy protein 16; c 59.8 64 0.0022 27.5 9.5 54 143-196 82-135 (152)
71 1go4_E MAD1 (mitotic arrest de 59.7 36 0.0012 27.1 7.4 31 144-174 13-43 (100)
72 2oqq_A Transcription factor HY 59.6 29 0.001 23.6 5.8 30 145-174 5-34 (42)
73 3vkg_A Dynein heavy chain, cyt 57.7 1.6E+02 0.0054 36.1 15.5 73 122-194 1893-1978(3245)
74 3he5_A Synzip1; heterodimeric 57.5 38 0.0013 23.0 6.1 22 161-182 7-28 (49)
75 3mtu_E Head morphogenesis prot 57.2 35 0.0012 26.0 6.7 41 147-187 34-74 (77)
76 1fmh_A General control protein 57.0 18 0.00063 22.8 4.2 27 145-171 3-29 (33)
77 3oja_B Anopheles plasmodium-re 56.9 1.5E+02 0.005 28.9 15.2 35 158-192 457-491 (597)
78 3lay_A Zinc resistance-associa 56.1 39 0.0013 29.2 7.7 64 118-189 68-138 (175)
79 3bas_A Myosin heavy chain, str 55.8 66 0.0022 24.5 8.7 10 185-194 59-68 (89)
80 4dzn_A Coiled-coil peptide CC- 55.7 30 0.001 21.8 5.0 28 153-180 5-32 (33)
81 1gd2_E Transcription factor PA 55.5 18 0.00061 27.0 4.8 53 124-187 14-66 (70)
82 2z5i_A TM, general control pro 55.4 18 0.00063 25.3 4.6 26 162-187 17-42 (52)
83 1u2m_A Histone-like protein HL 55.4 8.6 0.00029 31.2 3.3 47 176-222 65-111 (143)
84 3iox_A AGI/II, PA; alpha helix 53.5 94 0.0032 31.2 10.9 7 254-260 170-176 (497)
85 3mov_A Lamin-B1; LMNB1, B-type 53.5 47 0.0016 25.9 7.2 35 168-202 23-57 (95)
86 3swk_A Vimentin; cytoskeleton, 53.4 35 0.0012 26.1 6.3 36 146-181 3-38 (86)
87 2xdj_A Uncharacterized protein 53.2 73 0.0025 24.3 8.0 29 151-179 28-56 (83)
88 1fxk_A Prefoldin; archaeal pro 52.9 28 0.00097 26.5 5.8 29 163-191 71-99 (107)
89 1kd8_B GABH BLL, GCN4 acid bas 52.7 31 0.0011 22.7 4.9 20 147-166 5-24 (36)
90 3ghg_A Fibrinogen alpha chain; 52.4 69 0.0024 32.5 9.8 67 203-270 133-217 (562)
91 3qh9_A Liprin-beta-2; coiled-c 51.5 80 0.0027 24.2 7.9 40 152-191 35-74 (81)
92 3q0x_A Centriole protein; cent 51.5 21 0.00073 32.3 5.5 60 129-188 164-223 (228)
93 3m9b_A Proteasome-associated A 51.1 25 0.00086 32.3 6.0 27 168-194 58-84 (251)
94 2wt7_B Transcription factor MA 50.6 44 0.0015 26.1 6.5 34 161-194 52-85 (90)
95 1kd8_A GABH AIV, GCN4 acid bas 50.5 20 0.0007 23.5 3.8 28 146-173 4-31 (36)
96 1gk6_A Vimentin; intermediate 50.2 65 0.0022 22.8 7.3 36 165-200 8-46 (59)
97 1gd2_E Transcription factor PA 50.0 40 0.0014 25.0 5.9 30 164-193 29-58 (70)
98 2z5i_A TM, general control pro 49.9 43 0.0015 23.4 5.8 27 165-191 13-39 (52)
99 2wt7_B Transcription factor MA 49.4 33 0.0011 26.8 5.6 38 145-182 50-87 (90)
100 3cvf_A Homer-3, homer protein 49.0 46 0.0016 25.4 6.2 38 155-192 4-41 (79)
101 3haj_A Human pacsin2 F-BAR; pa 48.5 2E+02 0.0067 27.9 14.3 48 156-203 184-231 (486)
102 3he4_A Synzip6; heterodimeric 46.9 38 0.0013 23.6 4.9 34 145-178 19-52 (56)
103 3m91_A Proteasome-associated A 46.9 67 0.0023 22.5 6.3 33 146-178 12-44 (51)
104 3qh9_A Liprin-beta-2; coiled-c 46.9 68 0.0023 24.6 6.8 40 155-194 24-63 (81)
105 2eqb_B RAB guanine nucleotide 46.7 66 0.0023 25.5 7.0 12 189-200 47-58 (97)
106 2ve7_A Kinetochore protein HEC 45.9 40 0.0014 31.4 6.7 17 125-141 147-163 (315)
107 1i84_S Smooth muscle myosin he 45.7 96 0.0033 33.8 10.5 37 155-191 862-898 (1184)
108 2w83_C C-JUN-amino-terminal ki 45.7 23 0.0008 27.0 4.0 15 125-139 10-24 (77)
109 1ci6_A Transcription factor AT 45.6 55 0.0019 23.4 6.0 33 159-191 25-57 (63)
110 3ghg_B Fibrinogen beta chain; 45.6 1.6E+02 0.0055 29.2 11.1 82 123-212 79-160 (461)
111 3oa7_A Head morphogenesis prot 45.1 46 0.0016 29.7 6.4 51 143-193 30-86 (206)
112 1gk4_A Vimentin; intermediate 44.3 98 0.0034 23.2 10.7 44 160-203 4-47 (84)
113 1gk4_A Vimentin; intermediate 44.3 99 0.0034 23.2 9.3 44 159-202 28-74 (84)
114 3mq9_A Bone marrow stromal ant 44.2 27 0.00091 33.4 5.3 30 163-192 435-464 (471)
115 3oja_A Leucine-rich immune mol 44.2 2.2E+02 0.0074 27.1 11.8 27 154-180 364-390 (487)
116 2dgc_A Protein (GCN4); basic d 44.1 23 0.00077 25.6 3.7 27 145-171 32-58 (63)
117 3o0z_A RHO-associated protein 43.7 1.6E+02 0.0054 25.4 9.8 45 147-191 38-82 (168)
118 1cii_A Colicin IA; bacteriocin 43.6 2.5E+02 0.0087 28.2 12.0 49 144-192 357-405 (602)
119 2v4h_A NF-kappa-B essential mo 43.5 1.3E+02 0.0044 24.3 10.9 25 147-171 35-59 (110)
120 1i84_S Smooth muscle myosin he 43.4 1.2E+02 0.0042 32.9 10.9 35 145-179 866-900 (1184)
121 4h22_A Leucine-rich repeat fli 43.2 1.3E+02 0.0043 24.1 10.1 37 155-191 21-57 (103)
122 3tnu_A Keratin, type I cytoske 43.1 1.3E+02 0.0044 24.2 11.3 45 152-196 33-77 (131)
123 2xdj_A Uncharacterized protein 43.1 72 0.0025 24.3 6.6 51 144-194 7-57 (83)
124 2wuj_A Septum site-determining 42.8 26 0.00089 24.7 3.8 32 147-178 24-55 (57)
125 2oqq_A Transcription factor HY 42.6 77 0.0026 21.5 6.3 34 160-193 6-39 (42)
126 2lw1_A ABC transporter ATP-bin 42.4 83 0.0028 23.7 6.9 22 152-173 24-45 (89)
127 3u06_A Protein claret segregat 41.9 91 0.0031 30.2 8.7 39 158-196 4-42 (412)
128 4hpq_C ATG17, KLTH0D15642P; au 41.8 2.5E+02 0.0087 27.3 14.4 31 173-203 265-295 (413)
129 3u59_A Tropomyosin beta chain; 41.4 1.2E+02 0.0041 23.4 13.1 35 156-190 43-77 (101)
130 1urq_A M-tomosyn isoform; tran 41.3 98 0.0033 22.3 7.6 53 144-196 5-57 (63)
131 3v86_A De novo design helix; c 40.7 29 0.00099 21.0 3.1 23 154-176 4-26 (27)
132 4e61_A Protein BIM1; EB1-like 40.5 1.4E+02 0.0048 23.9 10.6 30 153-182 7-36 (106)
133 3hd7_A Vesicle-associated memb 40.4 1.2E+02 0.0041 23.1 9.7 59 143-201 5-63 (91)
134 4etp_A Kinesin-like protein KA 40.3 64 0.0022 31.1 7.3 41 159-199 5-45 (403)
135 2k48_A Nucleoprotein; viral pr 40.1 1.4E+02 0.0047 24.0 7.9 48 152-202 37-84 (107)
136 3r2p_A Apolipoprotein A-I; amp 40.0 38 0.0013 28.8 5.2 32 118-149 4-35 (185)
137 3m9b_A Proteasome-associated A 38.4 30 0.001 31.8 4.4 20 145-164 56-75 (251)
138 2w6a_A ARF GTPase-activating p 38.2 1.1E+02 0.0039 22.2 6.5 24 168-191 38-61 (63)
139 3mov_A Lamin-B1; LMNB1, B-type 38.0 1.4E+02 0.0048 23.1 10.3 40 160-199 40-82 (95)
140 1jcd_A Major outer membrane li 37.7 1E+02 0.0036 21.6 7.3 36 151-186 5-40 (52)
141 2wt7_A Proto-oncogene protein 37.4 1.1E+02 0.0037 21.7 6.6 32 160-191 26-57 (63)
142 2x3v_A Syndapin I, protein kin 37.4 2.3E+02 0.0079 25.5 15.3 47 157-203 183-229 (337)
143 2ve7_A Kinetochore protein HEC 36.8 61 0.0021 30.2 6.3 16 160-175 188-203 (315)
144 3tnu_B Keratin, type II cytosk 36.7 1.6E+02 0.0055 23.5 11.3 49 151-199 30-78 (129)
145 1dh3_A Transcription factor CR 36.7 17 0.00058 25.6 1.9 21 146-166 25-45 (55)
146 3s9g_A Protein hexim1; cyclin 36.2 1.4E+02 0.0046 23.9 7.3 41 146-186 40-80 (104)
147 1lwu_C Fibrinogen gamma chain; 36.0 1E+02 0.0036 29.0 7.9 11 254-264 86-96 (323)
148 1g6u_A Domain swapped dimer; d 36.0 37 0.0013 23.0 3.4 22 145-166 22-43 (48)
149 2zqm_A Prefoldin beta subunit 35.6 1.1E+02 0.0036 23.5 6.7 37 145-181 72-108 (117)
150 2wuj_A Septum site-determining 35.4 28 0.00097 24.5 3.0 27 146-172 30-56 (57)
151 3efg_A Protein SLYX homolog; x 35.2 1.1E+02 0.0039 22.8 6.5 38 158-195 15-52 (78)
152 1t2k_D Cyclic-AMP-dependent tr 34.9 1.2E+02 0.004 21.3 6.3 32 160-191 25-56 (61)
153 2j69_A Bacterial dynamin-like 34.6 1.5E+02 0.0052 30.2 9.4 38 167-204 362-399 (695)
154 2oxj_A Hybrid alpha/beta pepti 34.5 71 0.0024 20.7 4.4 15 168-182 12-26 (34)
155 1sfc_A VAMP 2, protein (synapt 34.5 1.6E+02 0.0054 22.7 9.9 58 143-200 30-87 (96)
156 2aze_A Transcription factor DP 33.2 1.1E+02 0.0037 26.2 6.7 41 151-195 6-46 (155)
157 3he4_B Synzip5; heterodimeric 33.0 1.1E+02 0.0037 20.5 5.3 22 166-187 15-36 (46)
158 3mq9_A Bone marrow stromal ant 32.9 57 0.0019 31.1 5.6 40 149-188 396-435 (471)
159 1kd8_B GABH BLL, GCN4 acid bas 32.6 95 0.0032 20.3 4.8 24 161-184 5-28 (36)
160 3m91_A Proteasome-associated A 32.6 1.3E+02 0.0043 21.0 6.6 33 155-187 14-46 (51)
161 3mud_A DNA repair protein XRCC 32.5 1.1E+02 0.0037 26.6 6.7 30 159-188 137-166 (175)
162 4dnd_A Syntaxin-10, SYN10; str 32.4 1.5E+02 0.0052 24.2 7.4 28 160-187 70-97 (130)
163 3efg_A Protein SLYX homolog; x 32.0 1.3E+02 0.0044 22.6 6.3 34 144-177 15-48 (78)
164 2oxj_A Hybrid alpha/beta pepti 31.8 64 0.0022 20.9 3.8 26 145-170 3-28 (34)
165 3mtu_A Tropomyosin alpha-1 cha 31.4 1E+02 0.0035 22.8 5.7 23 149-171 8-30 (75)
166 3mud_A DNA repair protein XRCC 31.0 90 0.0031 27.2 6.0 37 152-188 137-173 (175)
167 3c3f_A Alpha/beta peptide with 30.9 68 0.0023 20.8 3.8 6 147-152 5-10 (34)
168 3gp4_A Transcriptional regulat 30.5 64 0.0022 26.3 4.8 34 160-193 84-117 (142)
169 4dzo_A Mitotic spindle assembl 30.5 74 0.0025 25.9 5.1 21 158-178 5-25 (123)
170 3swf_A CGMP-gated cation chann 30.4 1.6E+02 0.0054 22.2 6.5 44 148-191 5-48 (74)
171 4dci_A Uncharacterized protein 29.9 2.5E+02 0.0086 23.6 8.8 14 187-200 75-88 (150)
172 1fxk_A Prefoldin; archaeal pro 29.2 1.5E+02 0.0052 22.3 6.6 36 145-180 67-102 (107)
173 3swy_A Cyclic nucleotide-gated 29.2 1.4E+02 0.0048 20.5 6.7 37 149-185 4-40 (46)
174 3azd_A Short alpha-tropomyosin 29.1 22 0.00076 23.2 1.4 28 158-185 5-32 (37)
175 1ik9_A DNA repair protein XRCC 29.0 3E+02 0.01 24.2 11.4 73 126-199 123-195 (213)
176 2l5g_B Putative uncharacterize 29.0 1.1E+02 0.0039 20.6 4.9 24 154-177 13-36 (42)
177 2wq1_A General control protein 28.9 1E+02 0.0035 19.8 4.4 11 171-181 14-24 (33)
178 2fxo_A Myosin heavy chain, car 28.5 2.3E+02 0.0078 22.7 14.8 18 207-224 82-99 (129)
179 3s4r_A Vimentin; alpha-helix, 28.5 89 0.0031 24.1 5.1 29 163-191 55-83 (93)
180 3nmd_A CGMP dependent protein 28.4 1.9E+02 0.0064 21.7 7.1 22 159-180 42-63 (72)
181 2avr_X Adhesion A; antiparalle 27.5 2.5E+02 0.0086 22.9 9.9 19 146-164 5-23 (119)
182 2w6b_A RHO guanine nucleotide 27.5 1.7E+02 0.0058 20.9 6.4 14 154-167 14-27 (56)
183 1fzc_C Fibrin; blood coagulati 27.4 47 0.0016 31.3 3.9 11 254-264 76-86 (319)
184 1m1j_B Fibrinogen beta chain; 27.2 4.6E+02 0.016 25.9 15.0 30 125-158 86-115 (464)
185 3w03_C DNA repair protein XRCC 26.7 1.3E+02 0.0045 26.2 6.3 37 160-196 148-184 (184)
186 3m3w_A Pacsin3, protein kinase 26.7 2.2E+02 0.0074 25.9 8.2 43 160-202 186-228 (320)
187 1gk6_A Vimentin; intermediate 26.7 1.7E+02 0.0057 20.6 7.8 48 148-195 5-52 (59)
188 1ez3_A Syntaxin-1A; three heli 26.7 2.2E+02 0.0075 21.9 12.3 14 242-255 98-111 (127)
189 3cl3_D NF-kappa-B essential mo 26.6 1.9E+02 0.0066 23.9 6.9 47 149-195 61-107 (130)
190 2q6q_A Spindle POLE BODY compo 26.5 2E+02 0.0069 21.4 7.8 46 147-192 7-52 (74)
191 3m48_A General control protein 26.5 86 0.0029 20.2 3.7 22 156-177 6-27 (33)
192 4h22_A Leucine-rich repeat fli 26.5 2.4E+02 0.0082 22.5 7.3 58 132-194 10-67 (103)
193 1x8y_A Lamin A/C; structural p 26.4 2.1E+02 0.0071 21.5 8.7 44 152-195 37-80 (86)
194 1nkp_B MAX protein, MYC proto- 26.4 59 0.002 24.1 3.6 14 161-174 58-71 (83)
195 2xv5_A Lamin-A/C; structural p 26.1 2E+02 0.0069 21.3 7.9 50 148-197 10-59 (74)
196 3c3f_A Alpha/beta peptide with 26.0 1.2E+02 0.0042 19.6 4.4 22 162-183 6-27 (34)
197 3a6m_A Protein GRPE, HSP-70 co 25.8 65 0.0022 27.8 4.2 43 152-197 28-70 (177)
198 1kd8_A GABH AIV, GCN4 acid bas 25.7 1.2E+02 0.0041 19.8 4.4 22 162-183 6-27 (36)
199 4fi5_A Nucleoprotein; structur 25.0 2.8E+02 0.0094 22.5 7.6 46 154-202 26-71 (113)
200 1jnm_A Proto-oncogene C-JUN; B 24.9 84 0.0029 22.2 4.0 32 159-190 24-55 (62)
201 2fic_A Bridging integrator 1; 24.8 3.3E+02 0.011 23.4 13.0 21 236-256 230-250 (251)
202 1fzc_C Fibrin; blood coagulati 24.6 55 0.0019 30.9 3.8 27 151-177 12-38 (319)
203 2hy6_A General control protein 24.6 77 0.0026 20.5 3.2 19 148-166 6-24 (34)
204 1gs9_A Apolipoprotein E, APOE4 24.5 3.2E+02 0.011 23.0 9.0 83 119-204 22-114 (165)
205 3u1c_A Tropomyosin alpha-1 cha 24.3 2.5E+02 0.0084 21.7 13.2 49 147-195 6-54 (101)
206 3kin_B Kinesin heavy chain; mo 24.2 67 0.0023 25.7 3.7 30 147-176 86-115 (117)
207 3cve_A Homer protein homolog 1 24.2 2.2E+02 0.0077 21.2 7.7 32 161-192 4-35 (72)
208 2l5g_B Putative uncharacterize 24.0 1.4E+02 0.0048 20.2 4.6 25 148-172 14-38 (42)
209 4gkw_A Spindle assembly abnorm 23.8 3.2E+02 0.011 22.9 14.7 68 140-207 8-89 (167)
210 4dk0_A Putative MACA; alpha-ha 23.5 2.3E+02 0.0078 25.6 7.8 6 302-307 227-232 (369)
211 2eqb_B RAB guanine nucleotide 23.5 2.7E+02 0.0093 21.9 10.6 31 158-188 6-36 (97)
212 1rh1_A Colicin B; FEPA, cytoto 23.4 1.6E+02 0.0056 29.4 6.9 64 193-256 346-412 (511)
213 3iox_A AGI/II, PA; alpha helix 23.1 5.8E+02 0.02 25.5 11.1 7 131-137 12-18 (497)
214 3f6n_A Virion-associated prote 22.9 2E+02 0.0069 23.7 6.3 21 200-220 40-60 (129)
215 3t97_B Nuclear pore complex pr 22.7 2.3E+02 0.0079 20.8 7.6 44 149-192 16-59 (65)
216 2r2v_A GCN4 leucine zipper; co 22.3 1.6E+02 0.0054 19.1 4.4 11 172-182 16-26 (34)
217 1deq_A Fibrinogen (alpha chain 22.2 5.4E+02 0.019 24.9 14.2 48 204-251 137-191 (390)
218 2v4h_A NF-kappa-B essential mo 22.2 3.1E+02 0.011 22.1 9.6 34 145-178 26-59 (110)
219 3abh_A Pacsin2, protein kinase 22.0 4.2E+02 0.014 23.5 11.6 45 159-203 194-238 (312)
220 3mxz_A Tubulin-specific chaper 22.0 3.1E+02 0.011 22.0 9.3 67 160-226 18-85 (116)
221 2w6a_A ARF GTPase-activating p 21.9 1.9E+02 0.0066 21.0 5.3 35 142-176 26-60 (63)
222 1dh3_A Transcription factor CR 21.7 86 0.003 21.9 3.4 24 160-183 25-48 (55)
223 1deq_A Fibrinogen (alpha chain 21.4 5.7E+02 0.019 24.8 11.3 43 181-224 101-143 (390)
224 3i2w_A Syndapin, LD46328P; EFC 21.3 4.1E+02 0.014 23.2 10.9 44 159-202 172-215 (290)
225 1go4_E MAD1 (mitotic arrest de 21.0 1.8E+02 0.006 23.1 5.5 23 158-180 13-35 (100)
226 1uii_A Geminin; human, DNA rep 21.0 2.8E+02 0.0095 21.3 6.4 25 157-181 46-70 (83)
227 3ljm_A Coil Ser L9C; de novo d 20.7 1.4E+02 0.0047 18.5 3.7 13 162-174 13-25 (31)
228 2pjw_H Uncharacterized protein 20.7 2.9E+02 0.0099 21.2 9.9 69 123-191 9-83 (88)
229 4emc_A Monopolin complex subun 20.7 2.5E+02 0.0086 24.7 6.9 53 130-182 4-59 (190)
230 3bas_A Myosin heavy chain, str 20.7 2.8E+02 0.0094 20.9 9.2 39 149-187 13-51 (89)
231 1hjb_A Ccaat/enhancer binding 20.6 2.4E+02 0.0083 21.6 6.1 33 160-192 39-71 (87)
232 1nkp_B MAX protein, MYC proto- 20.6 1.2E+02 0.0042 22.3 4.4 19 161-179 51-69 (83)
233 3rrk_A V-type ATPase 116 kDa s 20.5 4.5E+02 0.015 23.9 9.2 28 152-179 228-255 (357)
234 3i00_A HIP-I, huntingtin-inter 20.3 3.4E+02 0.012 21.9 7.9 50 146-195 29-78 (120)
235 2wg5_A General control protein 20.3 84 0.0029 24.8 3.5 17 282-299 74-90 (109)
236 1s94_A S-syntaxin; three helix 20.2 3.7E+02 0.013 22.2 10.7 102 152-255 38-142 (180)
237 1bf5_A Signal transducer and a 20.2 3.7E+02 0.013 27.4 9.0 40 144-183 3-42 (575)
238 2cly_A ATP synthase B chain, m 20.1 2.6E+02 0.009 24.8 7.1 29 183-213 157-185 (214)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=100.00 E-value=5.6e-44 Score=324.08 Aligned_cols=147 Identities=29% Similarity=0.441 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhh
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~ 238 (310)
+..|+.+|..|++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+. +....+|+
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~-~~~~~~l~ 139 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD-NEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC-CSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-cccHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999987653 34567899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 239 ~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
+||+||+++|.++|.++||++|+++|++|||++|+||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 140 eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA 207 (213)
T 4ani_A 140 QGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEP-NTVVEELQKGYKL--KDRVLRPA 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCS-SSEEEEEECCCEE--TTSCCSCE
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCC-CcEEEEEeCCeEE--CCEEeece
Confidence 99999999999999999999999999999999999999999999999 9999999999999 89999998
No 2
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=100.00 E-value=1.4e-43 Score=318.37 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhhh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN 239 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~~ 239 (310)
..|++++.++++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+....+....+|++
T Consensus 45 ~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~ 121 (197)
T 1dkg_A 45 ANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVE 121 (197)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHH
Confidence 344444444443 36789999999999999999999999999999999999999999999999886543344678999
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637 240 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK 309 (310)
Q Consensus 240 Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa 309 (310)
||+||+++|.++|.++||++|+++|++|||++|+||++++++++++ |+|++|+|+||+| +|||||||
T Consensus 122 Gv~~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~-~tVv~v~qkGY~l--~dRvLRpA 188 (197)
T 1dkg_A 122 DIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAP-GNVLGIMQKGYTL--NGRTIRAA 188 (197)
T ss_dssp HHHHHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCT-TBEEEEEECEEEE--TTEEEECE
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCc-CeEEEEeeCCeee--CCEEecce
Confidence 9999999999999999999999999999999999999999999999 9999999999999 89999998
No 3
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-44 Score=317.54 Aligned_cols=152 Identities=31% Similarity=0.428 Sum_probs=139.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchh
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~ 228 (310)
++.+..++.+...+++++..|++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+
T Consensus 11 ~~~~~~~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~ 90 (177)
T 3a6m_A 11 EKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAE 90 (177)
T ss_dssp GGGGTTTHHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 34455566667777777888889999999999999999999999999999999999999999999999999999998764
Q ss_pred hcchhhHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeec
Q 021637 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRT 308 (310)
Q Consensus 229 ~~~e~~~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRP 308 (310)
. +..++.+||+||+++|.++|+++||++|+++|++|||++||||+++++ ++ |||++|+|+||+| +||||||
T Consensus 91 ~---~~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~-gtVv~v~qkGY~l--~dRvLRp 161 (177)
T 3a6m_A 91 A---SPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EP-GKVAKVFQRGFRM--GEALVRP 161 (177)
T ss_dssp G---CHHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---ST-TBEEEEEECCEEE--TTEEEEC
T ss_pred c---cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---Cc-CeEEEEeecCeee--CCEEecC
Confidence 2 267899999999999999999999999999999999999999999987 67 9999999999999 8999999
Q ss_pred C
Q 021637 309 K 309 (310)
Q Consensus 309 a 309 (310)
|
T Consensus 162 A 162 (177)
T 3a6m_A 162 A 162 (177)
T ss_dssp E
T ss_pred e
Confidence 8
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.05 E-value=0.99 Score=40.01 Aligned_cols=81 Identities=23% Similarity=0.180 Sum_probs=46.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV--TNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~--~~A~~~~ikdLLpVlDnLERAl 224 (310)
++|.++...++....|+.++..|+.++..++++|.....++.+-...+++++...+ ......-|.+|=-.-|+|+|+.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445555555555666666666666666666666666665555555555544333 2333444566667788888886
Q ss_pred hch
Q 021637 225 TQI 227 (310)
Q Consensus 225 ~~~ 227 (310)
-+.
T Consensus 126 R~~ 128 (189)
T 2v71_A 126 RAT 128 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.68 E-value=3.5 Score=36.46 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDE----KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E----~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
++..+-+.+|++-+.. -...+.+++.++...+.. -.+|+.+|..+++.+.+++.++.++.-|.+.+|.+...-..
T Consensus 6 ~s~~ee~~ywk~~~~~-~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 6 SSLKEETAYWKELSMK-YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp SSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888775531 223455566666555544 23567788899999999999999999999999999876655
Q ss_pred HHH--HHHHHHHHHHhhhhhhHHHHHHhchhhcchhhH----hhhhHHHHHHHHHHHHHHh
Q 021637 200 SLV--TNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE----KINNSYQSIYKQLVEILGS 254 (310)
Q Consensus 200 ~~~--~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~----~l~~Gv~mi~kqL~~vL~k 254 (310)
+.. ....++=+..|-...+.|..-+-.+...+++.+ .....++-+...|..++++
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 532 334455566677777777776655544333322 2333444444444444443
No 6
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=91.50 E-value=1 Score=31.29 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~ 201 (310)
++++++..|+.-++.++.++.|+.|+|+....++.+-+..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999999998887766554
No 7
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.26 E-value=5.2 Score=32.56 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhHHHHHHhch
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT--NAQGEVMERLLQVLDNFERAKTQI 227 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~--~A~~~~ikdLLpVlDnLERAl~~~ 227 (310)
+...+|+.++..|.-++++|+.+|...+.+--+-...+++|+...+. .....-+++|=-.-|+|||+--+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 34567888888899999999999999988888888888888776553 345566778888899999996553
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=91.04 E-value=1.5 Score=33.42 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQ 206 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~ 206 (310)
++++++..|+.-++.++-++.|+.|+|+..+.++.+-+.++-.+..
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999999999999999998887776655443
No 9
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.78 E-value=1.1 Score=30.69 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
++++|.++.++++|.+.| +++.-.-+|-+..+..+..|+||+++
T Consensus 5 vaqlenevaslenenetl-------kkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETL-------KKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHH-------HHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 456666665555555544 45555556677788889999998764
No 10
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=89.65 E-value=5.6 Score=36.31 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=63.7
Q ss_pred hhhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 152 LKSFEDEKIDLE------RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 152 l~~~~~E~~~L~------~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
-..+.+++..|+ .+|..|+.|+....-..+-+.|.+.|++|+.-||-..++-.|...+.+.+.=+...=.+-++
T Consensus 113 R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~ 192 (234)
T 3plt_A 113 KEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLE 192 (234)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 35556666666666666777789999999999999999999998888888766666555555
Q ss_pred chhhcc---hhhHhhhhHHHHHHHHHH
Q 021637 226 QIKVQT---EGEEKINNSYQSIYKQLV 249 (310)
Q Consensus 226 ~~~~~~---e~~~~l~~Gv~mi~kqL~ 249 (310)
.++... ......+.|+.-+...+.
T Consensus 193 lldd~pv~PG~~r~~Y~g~~~t~qi~~ 219 (234)
T 3plt_A 193 LLDDSPVTPGEARPAYDGYEASRQIIM 219 (234)
T ss_dssp TSCCCCCCSSSCCCCCCCHHHHHHHHH
T ss_pred hcCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 553221 112345666665444333
No 11
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=89.58 E-value=3.5 Score=34.00 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCChhhHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 139 SNDDTKAAEIEALLKSFEDEKIDL---ERKVVNLSEELSA------ERARILRISADFDNFRKRTEKERLSLVTNAQGEV 209 (310)
Q Consensus 139 ~~~~~~~~e~e~~l~~~~~E~~~L---~~el~~Le~el~e------lkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ 209 (310)
+..++...+.++..+..+..+.+. ..+|.+...++.+ +++.|.-+...|.++++.+++++....
T Consensus 23 ~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe------- 95 (119)
T 2avr_X 23 NQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQK------- 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 344445555555444444444433 4455555555544 688899999999999998888877443
Q ss_pred HHHhhhhhhHHHHH
Q 021637 210 MERLLQVLDNFERA 223 (310)
Q Consensus 210 ikdLLpVlDnLERA 223 (310)
.|||||+..
T Consensus 96 -----~iI~nFe~I 104 (119)
T 2avr_X 96 -----AVISDFEKI 104 (119)
T ss_dssp -----HHHHHHHHH
T ss_pred -----HHHHHHHHH
Confidence 367888764
No 12
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=89.07 E-value=4.5 Score=33.31 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 176 lkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
+++.|..+.++|+++++-+++++.... -+||||+++.
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qe------------kiIdnFE~ik 105 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKIQ 105 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 677788888888888887777766433 3789998874
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.14 E-value=6.6 Score=35.36 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=22.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
..++..+++++..++..+..++.++.+++..+.++..+.+.++.|..+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555554444444444444444443
No 14
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.28 E-value=3.4 Score=29.32 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
.+++.++.+++..+..+++.|..++..|+.++...++.-.|+..-.+|
T Consensus 3 ~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 3 NAKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 357788888888888888888888888888888888888887776666
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.73 E-value=5.6 Score=33.25 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
...++.++....+|+.+|+.++..++.++++++..+..++.+..-+++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 16
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.27 E-value=2 Score=30.76 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=29.2
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
..+.+++..+..++.++..|..+|..|+.++..|+..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777888888888888888888888888777654
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.23 E-value=7.6 Score=29.97 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021637 176 ERARILRISADFDNFRKRT 194 (310)
Q Consensus 176 lkdk~lR~~ADfeN~RKRt 194 (310)
+.....+++.|-.+...|+
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.58 E-value=2 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=19.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
++.+..|+.+|+.++..|++++++++.++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777776654
No 19
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=82.47 E-value=14 Score=27.87 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=44.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVME 211 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ik 211 (310)
..+..+..|.++|-.++..+++++..+++.-..+..-...|.+.+..|+ -++..|+.++++
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455666777888888888888887777666666666667888888887 566677777664
No 20
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.92 E-value=4.2 Score=30.78 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+.+++..+..-..|+...+..|..|++++.+..+.+..++-+++.||
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444445555566666666666655555556665553
No 21
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.82 E-value=6.3 Score=30.67 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 128 ETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 128 ~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
.|.+.+++.. ..+..+++..+..++.|+..|+.+|..|++++..|+.-+..+
T Consensus 25 ~AarrSR~kr----k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 25 IAVRKSRDKA----KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444444443 235566677777888888888888888888888877666543
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.74 E-value=4.2 Score=39.42 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=39.9
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
++.+++.++..++.+..+|+++++.++.++.++++++... +..||++-.++++++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE----ETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcC
Confidence 5567777888888888888888888888888887776553 356777766666554
No 23
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.52 E-value=16 Score=27.51 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
...++.++.++..|+.+|..|+..+.+-+.+--+.++++.++-..+.-.+-
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~ 56 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIF 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445666666777777777777777777766666666666666555444333
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.49 E-value=22 Score=28.95 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQ 206 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~ 206 (310)
.+.++.-.+..++.|+..++.....|+..+.+.+.+|-....+++..--.++.++..++....
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777777777777777777776666666666666666665554433
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.86 E-value=23 Score=28.74 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=50.1
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVM--ERLLQVLDN 219 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~i--kdLLpVlDn 219 (310)
+..+.++.-.+..++.|+..++.....|+..+.+.+.+|-....+++..-..++.++..++......+- .+||.|-=.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777777777777888888877777776666666666666666665554433221 345544433
Q ss_pred H
Q 021637 220 F 220 (310)
Q Consensus 220 L 220 (310)
|
T Consensus 115 L 115 (129)
T 3tnu_B 115 L 115 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.53 E-value=34 Score=30.59 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhCCCeeec
Q 021637 243 SIYKQLVEILGSLGVVPVE 261 (310)
Q Consensus 243 mi~kqL~~vL~k~GVe~I~ 261 (310)
..|..+.+.....||..|.
T Consensus 179 ~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 179 SFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHHHGGGSEEECB
T ss_pred HHHHHHHHhCCCceEEEee
Confidence 4566666666677888875
No 27
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.20 E-value=4.9 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=25.2
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
.+.+++.++..++.++..|..+|..|+.++..|+.-+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777776666544
No 28
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.81 E-value=5.1 Score=29.03 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=26.8
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk 179 (310)
....+++.++..++.++..|+.+|..|+.|+..|++-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777778887777777777766643
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.82 E-value=5.6 Score=33.26 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=29.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 150 ~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.++..+..+...|++++..+.+++.++|..+..++-..++.++...
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~ 113 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666777666666666666665443
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.61 E-value=8 Score=29.12 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
++..++.++.+...++..+-.++..+.|
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~k 48 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQK 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333333333333333333
No 31
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=75.88 E-value=23 Score=31.72 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
+..++.++..++.++.+++.++.-+.++...++.+. ..|.+++++.....
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~---~rE~e~~~~~a~e~ 110 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT---RQEMEAAEKYRAQS 110 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345556666777777777777777777776666544 44555555544433
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.24 E-value=15 Score=28.78 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ 184 (310)
..+.++..|..++..++.+++.+.+++.-+.
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 33
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.15 E-value=15 Score=32.49 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
+..++.|+..|.+++.....+++.++.++.-+.++.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444555555555555555555544444443433
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.80 E-value=21 Score=38.85 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=33.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~ 198 (310)
+++..+.|+..++.++..|+++++++++.+.++..|.+.+..+.++-.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677777888888888888888887777777766554443
No 35
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.52 E-value=2.8 Score=30.19 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=25.7
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
..+.+++..+..++.++..|..++..|+.++..|+..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777666544
No 36
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=74.36 E-value=18 Score=27.24 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFD---NFRKRTEKERLSLV 202 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe---N~RKRt~kE~e~~~ 202 (310)
+.|...++..|..++.++..++....+...|++ |+|-+++.|+...+
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555554 56666666655443
No 37
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=74.12 E-value=11 Score=28.98 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 153 ~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+.+..|+...+.....++.++.+.+.++.-+.+++++++++++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777788888888888888889999999988876
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.44 E-value=20 Score=28.00 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=20.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+..+..+.+....+...++.++..+.++....-.+...++|++
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.52 E-value=11 Score=30.91 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
++++...-++++++|+.+|..|+.++..+.|+.+-+|+-.+
T Consensus 62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 33333333556777777888888777777787777765543
No 40
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=71.48 E-value=15 Score=27.99 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 128 ETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 128 ~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk 179 (310)
.|.+.+++.. ..+..+++..+..++.|+..|+.+|..|++++..|+.-
T Consensus 25 ~AakrSR~kr----k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 25 IAVRKSRDKA----KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544 23566667777788888888888888888888777643
No 41
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.04 E-value=32 Score=26.17 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFD---NFRKRTEKERLSL 201 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfe---N~RKRt~kE~e~~ 201 (310)
+...++..|..++.++..++....+...||+ |+|-+++.|+...
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444555555555555555554444444 4444555554433
No 42
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.71 E-value=19 Score=27.57 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=18.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
++.++.++..|+.+|..|+..+.+-+.+--++++++.++-
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555444444444444444443
No 43
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=70.18 E-value=22 Score=24.78 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=33.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
...++..++++..++..++.++..++.++.++..++.+++..+.+-..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677777777778888888888888888776655443
No 44
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=69.65 E-value=4.5 Score=24.73 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elk 177 (310)
.++=|++.|+++|..|+.++..+|
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 445567788888888888887765
No 45
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=69.55 E-value=30 Score=25.28 Aligned_cols=40 Identities=8% Similarity=0.206 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
++.++.....-...+...+.++.+++-.+.++.+|.+++|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445566777788888888888888888776
No 46
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=67.71 E-value=50 Score=27.06 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=9.7
Q ss_pred HHHHHHhhhhhhHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLE 163 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~ 163 (310)
+.+++.+..++.+...|.
T Consensus 5 ~~i~~~l~~Leae~q~L~ 22 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLA 22 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555555555555553
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.61 E-value=23 Score=29.15 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
++.+.+|+.+|..|..++.+....+.|+.++.+-+.-|+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 4456667777777777777777777777777776665553
No 48
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=67.19 E-value=37 Score=25.45 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=35.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVME 211 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ik 211 (310)
+...+..+..|.++|-.++..+++++..+++.-.. .-...|.+.+..|+ -.+..|+.+++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~--~~~~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEIS--NLKAAFEKNINTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34455566666677777777766666655533332 33336666666666 456666666553
No 49
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.05 E-value=34 Score=26.15 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~ 225 (310)
.+|+.+|..+..+...+.-.+-.++...+.||.+.+.|.. .....+.=+..|=..+|+.-.+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~--~R~~~E~d~~~LrkdvD~a~l~r~ 66 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML--QREEAENTLQSFRQDVDNASLARL 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455555555555555555555566666667766665443 344555555566667777766653
No 50
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.03 E-value=45 Score=26.32 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEE---LSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~e---l~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
+...|..+..-+..++.|++++..+++. +.-|+.+..--..||. ..|..||+..-.+.
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~--aERadREkl~~eKe 71 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ--AERHAREKLVEKKE 71 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHH
Confidence 3344445555556666666666655533 3334444444444443 34555555544433
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=66.83 E-value=43 Score=26.06 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
+..++.++..+..+...|.++|..|+++-..+...+..+.++.+-
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~ 50 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445566666666666667777777766666666666655555543
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.26 E-value=42 Score=25.75 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+..+..+-..|.-|+.+++++|.+...+..+.++.+
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555555443
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.71 E-value=28 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~l 181 (310)
+..|+.+|..++.+++...+++.
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 54
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.69 E-value=28 Score=42.37 Aligned_cols=51 Identities=4% Similarity=0.188 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+++++++++...++++..++++|.+++++++.++++|..+.++-+.++..
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666555555554443
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.67 E-value=42 Score=28.64 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+..++.++..++.++..++.++....+-+..++|.++-++.++.=...+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666665555444433
No 56
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.36 E-value=54 Score=26.30 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
++...+..+..++..|.-++..++..+++++.+|
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444444444444
No 57
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.97 E-value=18 Score=35.16 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
..++.++..+.+++.+++++++.+++++.++++++.. -+..||++..++.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~----~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ----SNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC
Confidence 4566677777777777777777777777777766544 3466666666666554
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.78 E-value=75 Score=30.95 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhC
Q 021637 242 QSIYKQLVEILGSL 255 (310)
Q Consensus 242 ~mi~kqL~~vL~k~ 255 (310)
..+..++.+.+++.
T Consensus 568 ~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 568 SLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 33434444444433
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.39 E-value=12 Score=26.42 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=13.5
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEEL 173 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el 173 (310)
..+..+..+...++.+++.|.+++.+|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 60
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=62.96 E-value=26 Score=27.71 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
.+...++.++.+...+..+.+||.+
T Consensus 68 ~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 68 KMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666777777765
No 61
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.73 E-value=33 Score=26.72 Aligned_cols=47 Identities=9% Similarity=0.217 Sum_probs=29.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+-.++..++++...+..+|..++.+...+...-.+...++-.|++.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33455666777777777777777777666665555555555555443
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.09 E-value=46 Score=36.21 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+.+....++++..|++++..+++++..+...+..+....++++.+++
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443333
No 63
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=62.07 E-value=25 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~l 181 (310)
+..|+.++..|++++..++.++.
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 64
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.14 E-value=20 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+.+++.++++++.+..++..+...+.+++.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 65
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=61.00 E-value=1e+02 Score=28.30 Aligned_cols=140 Identities=6% Similarity=-0.010 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhHHHHHHhchh--hcc
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG---EVMERLLQVLDNFERAKTQIK--VQT 231 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~---~~ikdLLpVlDnLERAl~~~~--~~~ 231 (310)
+++..++.++..+..++...++.|......+..+|.+...+.....+.... .-+.-|=.++-++-..+.... ...
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~l~~~~~~~~~ 271 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYK 271 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 455667777777777888888888888888888877777665554432221 111111122222222222110 000
Q ss_pred hhhHhhhhHHHH--HHHHHHHHHHhCCCeee--cCCCCCCCCCCCceeeeeeCCCCCCCCceeEEecccee
Q 021637 232 EGEEKINNSYQS--IYKQLVEILGSLGVVPV--ETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFV 298 (310)
Q Consensus 232 e~~~~l~~Gv~m--i~kqL~~vL~k~GVe~I--~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~ 298 (310)
...+.+...+.. ..+.+......+|.-.. .+.=++|.+.+...|..-.-. .+. +-|+-..+..|.
T Consensus 272 ~~~~~l~~~i~~id~~~Di~~fi~~~~tg~~p~~~~Fe~y~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 340 (350)
T 3aco_A 272 AIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKK-KAT-DGVTLTGINQTG 340 (350)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHTSTTSCCCCC------------------------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCCcccCCcchhhhhcccccc-CCC-CCeeeecccCCc
Confidence 011123333332 24666667777765432 234556666666666532212 333 344444444444
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.54 E-value=38 Score=34.31 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhCCCeeec
Q 021637 244 IYKQLVEILGSLGVVPVE 261 (310)
Q Consensus 244 i~kqL~~vL~k~GVe~I~ 261 (310)
-|..+.+-|+......+-
T Consensus 177 sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 578888888877655443
No 67
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.40 E-value=64 Score=25.85 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
+.++.+|+.+|..+..+...+.-.+-.++...+.||.|.+.|... ....++=+..|=-++|+.-.+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~--r~~~E~di~~lrK~lD~~~l~r 85 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ--REEAENTLQSFRQDVDNASLAR 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHhhhcccHHHHHH
Confidence 345667777777777777777777777888888899998877642 3334444444445556555443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.87 E-value=60 Score=31.05 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=6.5
Q ss_pred hhhhhhHHHHHHh
Q 021637 213 LLQVLDNFERAKT 225 (310)
Q Consensus 213 LLpVlDnLERAl~ 225 (310)
+-+.+++++.++.
T Consensus 454 ~~~~~~~~~~~~~ 466 (487)
T 3oja_A 454 LKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhH
Confidence 3445555555543
No 69
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.80 E-value=18 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAER 177 (310)
Q Consensus 161 ~L~~el~~Le~el~elk 177 (310)
.|+++|..|++++..++
T Consensus 6 alkqeiaalkkeiaalk 22 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.76 E-value=64 Score=27.51 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=35.6
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
.++.+++.++..-.+-+..++.++..|+-++..+.+++.++++|.+.+-.|.-+
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566655555555666677777777777777777777777777666665533
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.68 E-value=36 Score=27.12 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=18.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELS 174 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~ 174 (310)
.+..+..++.+++.|.+.|.+++..|+-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666554
No 72
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.61 E-value=29 Score=23.55 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=16.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELS 174 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~ 174 (310)
+.++|.....++..+.+|+++|..|+.|..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455555555555555555555555555543
No 73
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.74 E-value=1.6e+02 Score=36.11 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHHHHhcCCCh-------------hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 122 PTSFIMETLQSYKEALASNDD-------------TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 122 ~~~~~~~~~r~y~ea~~~~~~-------------~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
++...-++|+.|+.-...+-+ .|+.+..+++..++.++..++.+|++.+++.+++-.++..-+++.+
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae 1972 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE 1972 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667789988887754322 2444445555555555555555555555555555555544444444
Q ss_pred HHHHHH
Q 021637 189 NFRKRT 194 (310)
Q Consensus 189 N~RKRt 194 (310)
.-|+.+
T Consensus 1973 ~~k~~v 1978 (3245)
T 3vkg_A 1973 IKQKDA 1978 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 74
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.48 E-value=38 Score=23.03 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILR 182 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR 182 (310)
.|+.++..|+.+.+.++.+.+.
T Consensus 7 qlenevaslenenetlkkknlh 28 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLH 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhccc
Confidence 3455566666666666655543
No 75
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=57.23 E-value=35 Score=26.01 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
++...--+.++++++|+.++...+.+...+.+.+.....|+
T Consensus 34 ~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 34 QLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444444444444433333333333
No 76
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=57.00 E-value=18 Score=22.77 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSE 171 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~ 171 (310)
++++|.++.+.+.|+-.|++++..|+-
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566777777777777777776666654
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.90 E-value=1.5e+02 Score=28.86 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+++.++.++..+++++......+.....++++.+.
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333344444444444333333333344444333
No 78
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.11 E-value=39 Score=29.24 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=33.6
Q ss_pred CccCCchHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 118 AEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDL-------ERKVVNLSEELSAERARILRISADFDN 189 (310)
Q Consensus 118 ~~~~~~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L-------~~el~~Le~el~elkdk~lR~~ADfeN 189 (310)
=++++-..+..+.+.|..... ++..++.....|+..| +.+|.+|.+++.+++.++.....+|.|
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~--------~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTS--------ALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665542 2333344444444433 246666666666666665555555443
No 79
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.80 E-value=66 Score=24.51 Aligned_cols=10 Identities=0% Similarity=0.082 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 021637 185 ADFDNFRKRT 194 (310)
Q Consensus 185 ADfeN~RKRt 194 (310)
+|.+..+.|+
T Consensus 59 ~eaEe~~~~L 68 (89)
T 3bas_A 59 KQLEDKVEEL 68 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HhHHHHHHHH
Confidence 3333333333
No 80
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=55.67 E-value=30 Score=21.77 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 153 KSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 153 ~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
..+..|+..|+++|..|+=++..++..|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3445566677777777777777776554
No 81
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.53 E-value=18 Score=26.97 Aligned_cols=53 Identities=6% Similarity=0.156 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 124 ~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
.+-..+-|+|++-- +..+.++|..+..++.. ...|..+...|+..+..+..+.
T Consensus 14 ~qNR~AQRafReRK----~~~i~~LE~~v~~le~~-------~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 14 AQNRAAQRAFRKRK----EDHLKALETQVVTLKEL-------HSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666544 23444444444443333 3333444444444444444443
No 82
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=55.37 E-value=18 Score=25.31 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
|++.|..|+.++...|.+|.-+..++
T Consensus 17 Lek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 17 LKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444444444443333
No 83
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=55.36 E-value=8.6 Score=31.22 Aligned_cols=47 Identities=11% Similarity=0.240 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 021637 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFER 222 (310)
Q Consensus 176 lkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLER 222 (310)
....+.....+|+.+++..+++...........+...+-.++..+-.
T Consensus 65 ~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak 111 (143)
T 1u2m_A 65 LEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVAN 111 (143)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777666665555555555554444433
No 84
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=53.55 E-value=94 Score=31.19 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=3.2
Q ss_pred hCCCeee
Q 021637 254 SLGVVPV 260 (310)
Q Consensus 254 k~GVe~I 260 (310)
.++|..+
T Consensus 170 ~~~~~~~ 176 (497)
T 3iox_A 170 DLDITNL 176 (497)
T ss_dssp GCCGGGG
T ss_pred ccccccc
Confidence 4444444
No 85
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.50 E-value=47 Score=25.88 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
.|+..+.+++.+|....++++..--..+.++.+++
T Consensus 23 ~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 23 ACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIR 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334443343333333333333333433333
No 86
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=53.43 E-value=35 Score=26.06 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
.++..++..+..++..+.-++..++..+.+++.+|-
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888888888888874
No 87
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.17 E-value=73 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=11.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk 179 (310)
.+..++.|+..|.-.++.+.-++..++.+
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333333
No 88
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.91 E-value=28 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+..++.++.+++.+..++..+...+.+++
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444433
No 89
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.66 E-value=31 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=7.2
Q ss_pred HHHHHhhhhhhHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKV 166 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el 166 (310)
++|..++.+-.++..|+.++
T Consensus 5 QLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33333333333333333333
No 90
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.42 E-value=69 Score=32.48 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhchhhcch--------hhHhhhhHHHHHHHHHHHHHHh----------CCCeeecCCC
Q 021637 203 TNAQGEVMERLLQVLDNFERAKTQIKVQTE--------GEEKINNSYQSIYKQLVEILGS----------LGVVPVETVG 264 (310)
Q Consensus 203 ~~A~~~~ikdLLpVlDnLERAl~~~~~~~e--------~~~~l~~Gv~mi~kqL~~vL~k----------~GVe~I~~vG 264 (310)
..++++.|++++--|-.||-++.. +.... ..+-=++.|+.+.|||.++-.. +-|-+|.|+.
T Consensus 133 IrvLQsnLedq~~kIQRLEvDIdi-qirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p~~~~q~Lp~lKmrP~k 211 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDIDI-KIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKMKPVP 211 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCCSCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccchheeecchHHHHHHHHHHHHHhhcccCCccccccchhccccccc
Confidence 356667777777777777776542 11100 0011136788899999987643 2344455555
Q ss_pred CCCCCC
Q 021637 265 NPFDPL 270 (310)
Q Consensus 265 e~FDPn 270 (310)
+.++..
T Consensus 212 D~Vp~~ 217 (562)
T 3ghg_A 212 DLVPGN 217 (562)
T ss_dssp ------
T ss_pred ccCchh
Confidence 545443
No 91
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.55 E-value=80 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+..+++|...-+.++..-++++..++..+.--.|++++++
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444444444444445554443
No 92
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=51.54 E-value=21 Score=32.28 Aligned_cols=60 Identities=8% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 129 TLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 129 ~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
.++.|=..--+.=+++...++..++..+.|.+++...++....+++++++.|-|..-+++
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 444433333333345777888888888888888888888888888888888887766553
No 93
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=51.12 E-value=25 Score=32.32 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.|+.++..+..+..++.+...++|+.+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El 84 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQL 84 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444333
No 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.59 E-value=44 Score=26.05 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.|+.++..|..++..++....++..+.+.|+.+.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555555544
No 95
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=50.48 E-value=20 Score=23.51 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEEL 173 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el 173 (310)
.++|..++.+-.++..|+.++..|++-+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555555555555555555544443
No 96
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=50.15 E-value=65 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRISADFD---NFRKRTEKERLS 200 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfe---N~RKRt~kE~e~ 200 (310)
.|..++.++..++....+...|++ |+|-+++.|+..
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIat 46 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIAT 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444444433333 445555555443
No 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.01 E-value=40 Score=25.04 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 164 RKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 164 ~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
+.|..|+.++.++......+.++.+-+|..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 98
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=49.92 E-value=43 Score=23.37 Aligned_cols=27 Identities=7% Similarity=0.163 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 165 KVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 165 el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
.+..|+++++++.+++...+-.+.+++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555555555555554444333333
No 99
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.43 E-value=33 Score=26.83 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR 182 (310)
..++|.+...+..+++.|..++..+..+++.++.+|..
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777653
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=48.97 E-value=46 Score=25.36 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
++.+.+++.+++.+++.+..+|++++..+..+.+.-+-
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888777777653
No 101
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=48.54 E-value=2e+02 Score=27.89 Aligned_cols=48 Identities=6% Similarity=0.104 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
.+++..++.++.....++.+.++.|......+..++.+...+...+.+
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~ 231 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 231 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888889999999988888888777766665543
No 102
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.93 E-value=38 Score=23.57 Aligned_cols=34 Identities=21% Similarity=0.517 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
.+.+|..+..+++....|++.|..|++.+..+..
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777777777665543
No 103
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.93 E-value=67 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
.++...+..+...+..|.+-+.....+|..+++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444434443334333333
No 104
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.91 E-value=68 Score=24.64 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
+-.|++.|+-++.+++.+--.+.-++.-..+++.-+++.+
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445666666666666666666666666666666666554
No 105
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.70 E-value=66 Score=25.47 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 021637 189 NFRKRTEKERLS 200 (310)
Q Consensus 189 N~RKRt~kE~e~ 200 (310)
--++++..|+++
T Consensus 47 ~~~~~ie~ElEe 58 (97)
T 2eqb_B 47 EEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444555443
No 106
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.90 E-value=40 Score=31.42 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCC
Q 021637 125 FIMETLQSYKEALASND 141 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~ 141 (310)
.+.-+.++|+.=+..++
T Consensus 147 ~~~y~~~~Y~~fl~~~d 163 (315)
T 2ve7_A 147 FLDYTIKCYESFMSGAD 163 (315)
T ss_dssp HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 55677788888777654
No 107
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=45.73 E-value=96 Score=33.79 Aligned_cols=37 Identities=8% Similarity=0.110 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
++.++..++.++..+++.+.+++.++..+..+.+.++
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333333333
No 108
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.67 E-value=23 Score=26.97 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhcC
Q 021637 125 FIMETLQSYKEALAS 139 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~ 139 (310)
.|+.+|.-|.+.++.
T Consensus 10 evEnLi~EN~eLl~T 24 (77)
T 2w83_C 10 EVENLILENTQLLET 24 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666655543
No 109
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.64 E-value=55 Score=23.42 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
...|+.++..|+.+..+|+.++..+..+...++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666555555554
No 110
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.59 E-value=1.6e+02 Score=29.22 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 123 TSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 123 ~~~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
.=.|.+.|-.|..-+. ..+.+++..|.++.+--.+..+-|..++... ..-.+..-+-+|+-+...+++++.+
T Consensus 79 tCglad~L~kye~~V~----~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~----~~~q~~~~~n~~~~~~s~~mle~~~ 150 (461)
T 3ghg_B 79 GCQLQEALLQQERPIR----NSVDELNNNVEAVSQTSSSSFQYMYLLKDLW----QKRQKQVKDNENVVNEYSSELEKHQ 150 (461)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cchHHHHHHhcccchh----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----ccccCCCCcchhHHHHHHHHHHHHH
Confidence 4467778888888773 4666776666665554444444333333332 2233445566888888888998888
Q ss_pred HHHHHHHHHH
Q 021637 203 TNAQGEVMER 212 (310)
Q Consensus 203 ~~A~~~~ikd 212 (310)
.|-.+.++..
T Consensus 151 ~~~~~~~~~~ 160 (461)
T 3ghg_B 151 LYIDETVNSN 160 (461)
T ss_dssp THHHHHHHTH
T ss_pred HHHHhhhhcc
Confidence 8866554433
No 111
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=45.07 E-value=46 Score=29.66 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=43.5
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD------FDNFRKR 193 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD------feN~RKR 193 (310)
+..+++++++-+..++.++|.....++.+++++++.++.++.-+ |+++++.
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks 86 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhc
Confidence 35678899999999999999999999999999999999888754 6666665
No 112
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.34 E-value=98 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
+.++.....|+..+.+.+.+|-....++++.--..+.++..++.
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~ 47 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKE 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555544444444444443
No 113
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.25 E-value=99 Score=23.19 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFD---NFRKRTEKERLSLV 202 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfe---N~RKRt~kE~e~~~ 202 (310)
...++..|..++.++..++....+...||+ |+|-+++.|+.-.+
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444555555666666666666555555544 45555555554433
No 114
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.22 E-value=27 Score=33.40 Aligned_cols=30 Identities=3% Similarity=0.104 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
++++..-++.++++..++..+.++.+|.+-
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444443
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.16 E-value=2.2e+02 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
.++.+..++++.+...+.+..+....+
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~ 390 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTL 390 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 444444555555555544444443333
No 116
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.08 E-value=23 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSE 171 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~ 171 (310)
+.+++.++..+..++..|..++..|++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 117
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=43.75 E-value=1.6e+02 Score=25.42 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
++...+..++....+|+..+..|+.....+...+..+++.++-=|
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555666666666666666655555555554433
No 118
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=43.55 E-value=2.5e+02 Score=28.23 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=34.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
.+.++.+++.++++.++.++..+..+..+.....+.+.-++++..|+++
T Consensus 357 RlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n 405 (602)
T 1cii_A 357 RLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRN 405 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777777777777777777777644
No 119
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.49 E-value=1.3e+02 Score=24.32 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSE 171 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~ 171 (310)
..|..+..-+.++++|++++..+++
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555444
No 120
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.38 E-value=1.2e+02 Score=32.92 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk 179 (310)
+.+++..+..+++++.+++.++..|++++.+++..
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~ 900 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555544444433
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.18 E-value=1.3e+02 Score=24.11 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+.+|+..|.=+|.-|+..+.++.+.+..++-++..-.
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~ 57 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKN 57 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544555555555555555554444444433
No 122
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.14 E-value=1.3e+02 Score=24.23 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=16.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+.....|+.++...|..|+.++..++.....+.+-......|...
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555554444333333333333333333
No 123
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.11 E-value=72 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.249 Sum_probs=29.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.+..+|..+.....-..+|..+|..|+.++..|+..+-...-+.+.+++|-
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444333332233455667777777777777766666666666665544
No 124
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=42.82 E-value=26 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
+..+.|..+..+...|..++..|++++..++.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555544
No 125
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.58 E-value=77 Score=21.47 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.+|+.+..+|+....++.+++--++.|-.=+|+-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566666666666666666666666665555543
No 126
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.38 E-value=83 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=8.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEEL 173 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el 173 (310)
+..++.++..|+.++..|+.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 127
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.95 E-value=91 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
|...|+.++.++++++.+++.+..+++++.+.++.++.+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777877777766655
No 128
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=41.82 E-value=2.5e+02 Score=27.25 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 173 LSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 173 l~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
....+..+....+++..+...+.+.++..++
T Consensus 265 ~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~ 295 (413)
T 4hpq_C 265 VRKVNMLLDERDADKAKMQATLSKLLTELRK 295 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445555555555555555555443
No 129
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.39 E-value=1.2e+02 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
+.++..|+.++..++.+++.+.+++..++...+.-
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 130
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.29 E-value=98 Score=22.30 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=37.4
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
++..+..++.........-..++-+--+.|+.|.++-..++...++|++-..+
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~ 57 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHE 57 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556667777788889999999999999999976653
No 131
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=40.74 E-value=29 Score=20.96 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~el 176 (310)
++.+|.-+|+.++..|+.+.+++
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 34555666666666666665554
No 132
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.52 E-value=1.4e+02 Score=23.91 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 153 KSFEDEKIDLERKVVNLSEELSAERARILR 182 (310)
Q Consensus 153 ~~~~~E~~~L~~el~~Le~el~elkdk~lR 182 (310)
.++++|+...+.++.+|.+++.+++.....
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666665554444
No 133
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=40.38 E-value=1.2e+02 Score=23.08 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=41.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~ 201 (310)
.++.++..++.+...-..+--+++-+-.++++.+.++-..+......|++.+.+-+..+
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555544444456667778888899999999999999998877665543
No 134
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.30 E-value=64 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
+..|++++..|+++..+++..+..+.++.+-++.++.++..
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555666555555555443
No 135
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.08 E-value=1.4e+02 Score=24.02 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
++.+++|+...+.+|....+++++....|- .|=+.+.|++-..+....
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E---~DPDevNK~tl~~R~~~V 84 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVE---VDPDDVNKSTLQNRRAAV 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHH
Confidence 334445555555555555555444443332 233345555554444433
No 136
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=40.04 E-value=38 Score=28.82 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=18.7
Q ss_pred CccCCchHHHHHHHHHHHHhcCCChhhHHHHH
Q 021637 118 AEEAPTSFIMETLQSYKEALASNDDTKAAEIE 149 (310)
Q Consensus 118 ~~~~~~~~~~~~~r~y~ea~~~~~~~~~~e~e 149 (310)
+.+.+.-.+..++--|=..+-+..+..+.+++
T Consensus 4 ~p~s~~e~v~~~~w~Y~~~l~~~a~~~ve~l~ 35 (185)
T 3r2p_A 4 PPQSPWDRVKDLATVYVDVLKDSGRDYVSQFE 35 (185)
T ss_dssp CCCCTTHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666676666555555555553
No 137
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.41 E-value=30 Score=31.76 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=7.5
Q ss_pred HHHHHHHhhhhhhHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLER 164 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~ 164 (310)
+.+++.++..+...+..|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~ 75 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLME 75 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333333
No 138
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=38.17 E-value=1.1e+02 Score=22.20 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 168 ~Le~el~elkdk~lR~~ADfeN~R 191 (310)
.|.+|+.-+..++..++.+--|+|
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 333444444444455555555554
No 139
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.98 E-value=1.4e+02 Score=23.13 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFD---NFRKRTEKERL 199 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfe---N~RKRt~kE~e 199 (310)
..++..|..|+.++..++....+...||+ |+|-+++.|+.
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444444443 44444444443
No 140
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.72 E-value=1e+02 Score=21.58 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=19.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
.+..+.+++..|..++..|+.++..++....-++.|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666655555555544433333
No 141
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.37 E-value=1.1e+02 Score=21.71 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
..|+.++..|+.+...|+..+..+..+...++
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444443
No 142
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=37.37 E-value=2.3e+02 Score=25.50 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
+++..++.++..+..++...++.|......+..++.....+.....+
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 229 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFE 229 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455566666667777777777777777777777766666554443
No 143
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=36.76 E-value=61 Score=30.18 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSA 175 (310)
Q Consensus 160 ~~L~~el~~Le~el~e 175 (310)
+.|++++..|++++++
T Consensus 188 e~L~~~~~~L~eEi~~ 203 (315)
T 2ve7_A 188 ESLEAKNRALNEQIAR 203 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 144
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.73 E-value=1.6e+02 Score=23.52 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=25.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
.+.....|+.++...|..|+.++..++.....+.+-......|...++.
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666655544444444444445444443
No 145
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.71 E-value=17 Score=25.63 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=7.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKV 166 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el 166 (310)
.++|..+..++.|+..|..++
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 146
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.21 E-value=1.4e+02 Score=23.88 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~AD 186 (310)
-++|..+..+++|.+.|+..-.....++.++..++-|+.++
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 45566666666666666664444444455555555555444
No 147
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.05 E-value=1e+02 Score=29.00 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=7.5
Q ss_pred hCCCeeecCCC
Q 021637 254 SLGVVPVETVG 264 (310)
Q Consensus 254 k~GVe~I~~vG 264 (310)
.-||-.|.|.|
T Consensus 86 ~SGvY~I~p~~ 96 (323)
T 1lwu_C 86 DSGLYYIKPLK 96 (323)
T ss_dssp SSEEEEECCTT
T ss_pred CCeEEEEecCC
Confidence 45777887754
No 148
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.02 E-value=37 Score=22.96 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKV 166 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el 166 (310)
++.+|++++.+++.+..|+.++
T Consensus 22 laaleselqalekklaalkskl 43 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 149
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.61 E-value=1.1e+02 Score=23.52 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=19.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~l 181 (310)
...++...+.++.++..|+.++..+++++.+++..+.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555554443
No 150
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.37 E-value=28 Score=24.53 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEE 172 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~e 172 (310)
.++...+..+..|+.+|++++..|+++
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555566666666666655544
No 151
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=35.25 E-value=1.1e+02 Score=22.83 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
-+.+|+.++.=.+.-+++|.+-+.+.+.+.+-+++++.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555554444444443
No 152
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.86 E-value=1.2e+02 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
..|+.++..|+.+..+|...+..+..+...++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 153
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=34.60 E-value=1.5e+02 Score=30.23 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 167 VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (310)
Q Consensus 167 ~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~ 204 (310)
..+++++..++..+..+....++++.++.+-.+.....
T Consensus 362 ~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 399 (695)
T 2j69_A 362 NELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQART 399 (695)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 154
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.51 E-value=71 Score=20.69 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021637 168 NLSEELSAERARILR 182 (310)
Q Consensus 168 ~Le~el~elkdk~lR 182 (310)
+|-.+..++++...|
T Consensus 12 eLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 12 ELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 333333333333333
No 155
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.49 E-value=1.6e+02 Score=22.73 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=42.8
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (310)
Q Consensus 143 ~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~ 200 (310)
.++..+..++.....-..+--+++-+--+.|+.|.++-..+...-..|++.+.+-+..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rk 87 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555556677778888899999999999999999888665443
No 156
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.15 E-value=1.1e+02 Score=26.15 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+++.++.|...+++.|+..++++.+|.. .+..|+|+.+|-+
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~----Q~vafknLv~RN~ 46 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELIL----QQIAFKNLVQRNR 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3556677778888888888777777664 3467888877753
No 157
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.05 E-value=1.1e+02 Score=20.48 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 166 VVNLSEELSAERARILRISADF 187 (310)
Q Consensus 166 l~~Le~el~elkdk~lR~~ADf 187 (310)
+++-..+++.+++.+.-+.|+.
T Consensus 15 leernaelknlkehlkfakael 36 (46)
T 3he4_B 15 LEERNAELKNLKEHLKFAKAEL 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhHHHHHHHHHHHH
Confidence 3333344444555444444443
No 158
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.95 E-value=57 Score=31.05 Aligned_cols=40 Identities=8% Similarity=0.252 Sum_probs=21.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
++--..++.++.++++.+..++++.....--..-+++-.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 3334455666666666666666666654444444444433
No 159
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.64 E-value=95 Score=20.34 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRIS 184 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ 184 (310)
.|+.++++|-.+..+++++..|++
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555555555555443
No 160
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.62 E-value=1.3e+02 Score=21.03 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 155 FEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
++.++..|.++...|.+-+.+.++++..+.++.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 161
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=32.46 E-value=1.1e+02 Score=26.64 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
++.|+.++..|++++...|++++.+..+++
T Consensus 137 V~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 137 TAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554444433
No 162
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.42 E-value=1.5e+02 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
.+|+..+..++..|++|.+-..-..++-
T Consensus 70 ~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 70 NELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 3445555555556655555554444333
No 163
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.96 E-value=1.3e+02 Score=22.55 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=15.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+.++|..+.-.++-+++|...|...+++++.++
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444444444444444444444333
No 164
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.80 E-value=64 Score=20.89 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLS 170 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le 170 (310)
..++|..++.+=.++.+|+.++..|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34555555555555555555544443
No 165
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=31.41 E-value=1e+02 Score=22.82 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=11.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSE 171 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~ 171 (310)
...+..+..+++.+...+..+++
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555544
No 166
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=30.99 E-value=90 Score=27.16 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=21.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
+..++.+++.|+.++...+.+...+.+.+.....|+.
T Consensus 137 V~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 137 TAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555666666666666666655555555553
No 167
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.85 E-value=68 Score=20.75 Aligned_cols=6 Identities=50% Similarity=0.589 Sum_probs=2.2
Q ss_pred HHHHHh
Q 021637 147 EIEALL 152 (310)
Q Consensus 147 e~e~~l 152 (310)
++|..+
T Consensus 5 QLEdKV 10 (34)
T 3c3f_A 5 QIEXKL 10 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 168
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.51 E-value=64 Score=26.32 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKR 193 (310)
.-|++++..+++++.+++.....+..-.+.|...
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444444443
No 169
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=30.48 E-value=74 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkd 178 (310)
|+.+|+++|+.+++....||+
T Consensus 5 e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 170
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.37 E-value=1.6e+02 Score=22.19 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+|..+..++.-++-|+.+++.|-.+....+.++.+-....++.-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555666666666666655555555444444433
No 171
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=29.86 E-value=2.5e+02 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 021637 187 FDNFRKRTEKERLS 200 (310)
Q Consensus 187 feN~RKRt~kE~e~ 200 (310)
.+|++.....++..
T Consensus 75 i~~iq~q~~~ek~~ 88 (150)
T 4dci_A 75 VANIQQQVAGKRSE 88 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666555553
No 172
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.24 E-value=1.5e+02 Score=22.27 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~ 180 (310)
...++...+.++.++..|+.++..+++++.+++..+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666666666665555444
No 173
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.19 E-value=1.4e+02 Score=20.46 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=18.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISA 185 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~A 185 (310)
|+.+..++.-++-|+.+++.|-.+......++.+-..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit 40 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLS 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555544444333
No 174
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.11 E-value=22 Score=23.22 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISA 185 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~A 185 (310)
+++.++.+|..|+.+++.+.++..+++.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777776666554
No 175
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.96 E-value=3e+02 Score=24.21 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (310)
Q Consensus 126 ~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e 199 (310)
+.+++.|-=+++. .-...+..+..+...++.+.+.|.++++++-..-.+....++.--.-.=|=+|+-.|+.+
T Consensus 123 i~elfd~~~~~~~-~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 123 IRELIAYALDTIA-ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3456666555521 111122222333333333333333333333333333333333333444445555544444
No 176
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.95 E-value=1.1e+02 Score=20.65 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+..|+...+++|..|++++.+|.
T Consensus 13 kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 13 RVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444
No 177
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.85 E-value=1e+02 Score=19.82 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 021637 171 EELSAERARIL 181 (310)
Q Consensus 171 ~el~elkdk~l 181 (310)
.+..++.+...
T Consensus 14 ~~~~~le~EV~ 24 (33)
T 2wq1_A 14 SKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhHHHHHHHH
Confidence 33333333333
No 178
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.55 E-value=2.3e+02 Score=22.71 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=8.4
Q ss_pred HHHHHHhhhhhhHHHHHH
Q 021637 207 GEVMERLLQVLDNFERAK 224 (310)
Q Consensus 207 ~~~ikdLLpVlDnLERAl 224 (310)
+.-+.+|-.=++..+...
T Consensus 82 e~~l~el~~rleeeee~~ 99 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445544444444443
No 179
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.52 E-value=89 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 163 ERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 163 ~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
+..|..|+.++..+...-.|+..+.+|+.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666643
No 180
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.39 E-value=1.9e+02 Score=21.67 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~ 180 (310)
+.+|+.+|.+++.++.+|+..+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 181
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.53 E-value=2.5e+02 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhhHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLER 164 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~ 164 (310)
+++.+.+.+|+.+...|.+
T Consensus 5 ~~V~s~l~~LEaeyq~L~~ 23 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLAN 23 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555543
No 182
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.48 E-value=1.7e+02 Score=20.89 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=5.5
Q ss_pred hhhhHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVV 167 (310)
Q Consensus 154 ~~~~E~~~L~~el~ 167 (310)
++.+++.+|+++..
T Consensus 14 aLkDqV~eL~qe~k 27 (56)
T 2w6b_A 14 ALKDEVQELRQDNK 27 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 183
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.38 E-value=47 Score=31.33 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=7.6
Q ss_pred hCCCeeecCCC
Q 021637 254 SLGVVPVETVG 264 (310)
Q Consensus 254 k~GVe~I~~vG 264 (310)
.-||-.|.|.|
T Consensus 76 ~SGvY~I~p~~ 86 (319)
T 1fzc_C 76 QSGLYFIKPLK 86 (319)
T ss_dssp CCEEEEECCTT
T ss_pred CCeEEEEecCC
Confidence 45788888754
No 184
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.20 E-value=4.6e+02 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHhhhhhhH
Q 021637 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDE 158 (310)
Q Consensus 125 ~~~~~~r~y~ea~~~~~~~~~~e~e~~l~~~~~E 158 (310)
.+.+-|-.|.+-+ +..+.+++..+.++.+.
T Consensus 86 ~l~D~L~k~q~~V----~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 86 ELQTTLLKQEKTV----KPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh----HhHHHHHHHHHHHHhhh
Confidence 3445555666655 33566666666665543
No 185
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.71 E-value=1.3e+02 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~k 196 (310)
+-+-..+..|+.++..++..+.|++-|+....+|++|
T Consensus 148 d~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 148 CYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566666667777777777777777777777653
No 186
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=26.71 E-value=2.2e+02 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
..++.++.....++...++.|......+..++.+...+...+.
T Consensus 186 ~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~ 228 (320)
T 3m3w_A 186 RKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAF 228 (320)
T ss_dssp SSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444455555667777788888888888888887776655443
No 187
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.71 E-value=1.7e+02 Score=20.57 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+...+..++.++..++.++...-.+..++-+--+++-.|..-|||-++
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 344455555666666666666666666677777788888888988664
No 188
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.65 E-value=2.2e+02 Score=21.92 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhC
Q 021637 242 QSIYKQLVEILGSL 255 (310)
Q Consensus 242 ~mi~kqL~~vL~k~ 255 (310)
..+.+.|.+++..|
T Consensus 98 ~~L~~kf~e~m~~y 111 (127)
T 1ez3_A 98 STLSRKFVEVMSEY 111 (127)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 189
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.56 E-value=1.9e+02 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=22.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+-++++++.++.--+++..+=+..++.|+..|-.+..||+|--|-..
T Consensus 61 ~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 61 RMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322333333444555666666666666666544443
No 190
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.55 E-value=2e+02 Score=21.45 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
++...+..-++|++.|..-+..|..++..+.+-...+..+..|+++
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555556666666666666666666666555555566555553
No 191
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.52 E-value=86 Score=20.19 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021637 156 EDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 156 ~~E~~~L~~el~~Le~el~elk 177 (310)
++++++|-.+...|+.+...++
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444444444444333
No 192
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.51 E-value=2.4e+02 Score=22.48 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=45.6
Q ss_pred HHHHHhcCCChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 132 SYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (310)
Q Consensus 132 ~y~ea~~~~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt 194 (310)
.|+.|.. ..+++-++-.++.=+++-|+.+++++++.+.+++..+....-+++-.++-.
T Consensus 10 KyrKAMV-----snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~ 67 (103)
T 4h22_A 10 KYKKAMV-----SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAH 67 (103)
T ss_dssp THHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777776 367787777888888888888888888888888888888888887766543
No 193
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.44 E-value=2.1e+02 Score=21.53 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
+..++.++..++.++...-.+..++-+--+++-.|..-|||-++
T Consensus 37 i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 37 LAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33333333333333333333333444444455555556665544
No 194
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.40 E-value=59 Score=24.09 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELS 174 (310)
Q Consensus 161 ~L~~el~~Le~el~ 174 (310)
.|+.++..|+.+..
T Consensus 58 ~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 58 THQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 195
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.05 E-value=2e+02 Score=21.30 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
+...+..++.++..++.++...-.+..++-+--+++-.|..-||+-++-|
T Consensus 10 ~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445555555555555555555666666677778888888776544
No 196
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.03 E-value=1.2e+02 Score=19.57 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~ 183 (310)
|+.++++|-.+..++.+...|+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3334444444444444444443
No 197
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=25.81 E-value=65 Score=27.76 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE 197 (310)
+..++.++.+++.++.-+.++.+.++ .|...|.++.++.....
T Consensus 28 ~~~l~~e~~e~~d~~lR~~Ae~eN~r---kR~~rE~e~~~~~a~e~ 70 (177)
T 3a6m_A 28 LKAAEEELKGLKDKYLRLLADFDNYR---KRMEEELKAREREGVLK 70 (177)
T ss_dssp TTGGGGTSSSHHHHHHTTTTTTTTHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33444444455544444444444444 34444555555444333
No 198
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.67 E-value=1.2e+02 Score=19.83 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 162 L~~el~~Le~el~elkdk~lR~ 183 (310)
|+.++++|-.+..++.+...|+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444444444444443
No 199
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.96 E-value=2.8e+02 Score=22.48 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 154 ~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
.+++|+...+.+|.....++.+....|- .|=+.+.|.+-..+....
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e---~DPDevNK~tl~~R~~~V 71 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYE---KDPDELNKRTLTDREGVA 71 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHH
Confidence 3444444444444444444444433332 233445555555444433
No 200
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.94 E-value=84 Score=22.16 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNF 190 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~ 190 (310)
...|+.++..|+.+...|+..+..+..+...+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444433
No 201
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.83 E-value=3.3e+02 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHhCC
Q 021637 236 KINNSYQSIYKQLVEILGSLG 256 (310)
Q Consensus 236 ~l~~Gv~mi~kqL~~vL~k~G 256 (310)
.|+.-...++.+|..+|.+++
T Consensus 230 ~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 230 NFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 455555566777777776654
No 202
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.60 E-value=55 Score=30.88 Aligned_cols=27 Identities=4% Similarity=0.001 Sum_probs=10.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021637 151 LLKSFEDEKIDLERKVVNLSEELSAER 177 (310)
Q Consensus 151 ~l~~~~~E~~~L~~el~~Le~el~elk 177 (310)
.+...+.++..|+..+..+++++.+|+
T Consensus 12 ~Il~~~~~i~~L~~~l~~~~~ki~~L~ 38 (319)
T 1fzc_C 12 SILTHDSSIRYLQEIYNSNNQKIVNLK 38 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444333
No 203
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.57 E-value=77 Score=20.53 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=6.8
Q ss_pred HHHHhhhhhhHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKV 166 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el 166 (310)
+|..++.+-.++..|+.++
T Consensus 6 LEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 6 LADAVEELASANYHLANAV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3333333333333333333
No 204
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.46 E-value=3.2e+02 Score=22.98 Aligned_cols=83 Identities=10% Similarity=0.096 Sum_probs=52.2
Q ss_pred ccCCchHHHHHHHHHHHHhcCCChhhHHHHH-HHhhhhhhHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 021637 119 EEAPTSFIMETLQSYKEALASNDDTKAAEIE-ALLKSFEDEKID-LERKVVNLSEELSAERAR--------ILRISADFD 188 (310)
Q Consensus 119 ~~~~~~~~~~~~r~y~ea~~~~~~~~~~e~e-~~l~~~~~E~~~-L~~el~~Le~el~elkdk--------~lR~~ADfe 188 (310)
...+...++.+.--|=..+-+..+..+.+|. +++ -.|++. |...+.++...+.++..+ ..++..+.+
T Consensus 22 ~~~~le~v~~~~w~Y~~q~~~~a~~~v~ql~~sel---~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e 98 (165)
T 1gs9_A 22 SGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQV---TQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQ 98 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHH---HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3445556667777788888777777777765 222 222222 444444554544444433 256778899
Q ss_pred HHHHHHHHHHHHHHHH
Q 021637 189 NFRKRTEKERLSLVTN 204 (310)
Q Consensus 189 N~RKRt~kE~e~~~~~ 204 (310)
.+|.++.++.++.+..
T Consensus 99 ~Lr~~L~~d~EelR~~ 114 (165)
T 1gs9_A 99 AAQARLGADMEDVRGR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 205
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.27 E-value=2.5e+02 Score=21.69 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.|...+..+..+.+....+...++.++..+.++....-.+...+.||++
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666666654
No 206
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.18 E-value=67 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=14.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 147 EIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 147 e~e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
++...++....++..|+.++..|+.++..+
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444555555555555555544
No 207
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.16 E-value=2.2e+02 Score=21.16 Aligned_cols=32 Identities=3% Similarity=0.074 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
++.+++.+++.+..+|++++..+..+.+.-+-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888877777653
No 208
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.02 E-value=1.4e+02 Score=20.17 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=12.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH
Q 021637 148 IEALLKSFEDEKIDLERKVVNLSEE 172 (310)
Q Consensus 148 ~e~~l~~~~~E~~~L~~el~~Le~e 172 (310)
+-.++...+.++++|+.++.+|++.
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555443
No 209
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.81 E-value=3.2e+02 Score=22.89 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=42.3
Q ss_pred CChhhHHHHHHHhhhhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 140 NDDTKAAEIEALLKSFEDEKIDLERKV--------------VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (310)
Q Consensus 140 ~~~~~~~e~e~~l~~~~~E~~~L~~el--------------~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A 205 (310)
+.+-.++++++.+.+++.|.++-+.++ ..|++...--...+-++.|+..-+.|..++--...+.+.
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~ 87 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNS 87 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 344567788887877777766555443 344444444444566777888888877777655555544
Q ss_pred HH
Q 021637 206 QG 207 (310)
Q Consensus 206 ~~ 207 (310)
.+
T Consensus 88 ~q 89 (167)
T 4gkw_A 88 QQ 89 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 210
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.54 E-value=2.3e+02 Score=25.56 Aligned_cols=6 Identities=0% Similarity=-0.020 Sum_probs=3.1
Q ss_pred CCeEee
Q 021637 302 TTFLTR 307 (310)
Q Consensus 302 ~~RVLR 307 (310)
.|+|.+
T Consensus 227 ~g~V~~ 232 (369)
T 4dk0_A 227 HAKIDS 232 (369)
T ss_dssp CCCBCC
T ss_pred EEEEEE
Confidence 555544
No 211
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.52 E-value=2.7e+02 Score=21.89 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARILRISADFD 188 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~lR~~ADfe 188 (310)
+.+.++.++..|+.++..+...+.++.+++.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445555556666666665555555555444
No 212
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=23.40 E-value=1.6e+02 Score=29.36 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhc--chhhHhhhhHHHHH-HHHHHHHHHhCC
Q 021637 193 RTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQ--TEGEEKINNSYQSI-YKQLVEILGSLG 256 (310)
Q Consensus 193 Rt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~--~e~~~~l~~Gv~mi-~kqL~~vL~k~G 256 (310)
.+.+|+.+..+.+..+.++..=+.+..|++-...+... ..+-..+.+.++.+ ++.|-+-|.++|
T Consensus 346 ~lAkeIA~~lkn~KGKkIRnvdDAL~sfeKyk~nlnkK~nakDR~AI~nALesvd~~~mAkNL~kfs 412 (511)
T 1rh1_A 346 ALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDMGNKFAALG 412 (511)
T ss_dssp HHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHHHCCHHHHHHTTSSSS
T ss_pred HHHHHHHHHHhhccCceecCHHHHHHHHHHHHhchhhccccccHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 44445555445555555555555555555555433211 12334555666554 455555555554
No 213
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.14 E-value=5.8e+02 Score=25.54 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 021637 131 QSYKEAL 137 (310)
Q Consensus 131 r~y~ea~ 137 (310)
.+|...+
T Consensus 12 a~yq~el 18 (497)
T 3iox_A 12 TAYQTEL 18 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 214
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=22.91 E-value=2e+02 Score=23.67 Aligned_cols=21 Identities=5% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHH
Q 021637 200 SLVTNAQGEVMERLLQVLDNF 220 (310)
Q Consensus 200 ~~~~~A~~~~ikdLLpVlDnL 220 (310)
+...-...++|+||-..+|.-
T Consensus 40 ~~lEsiAAKIIkDisdkId~C 60 (129)
T 3f6n_A 40 ESLETVAAKIVNDLTKLINDC 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHhcC
Confidence 444566677788877666653
No 215
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.67 E-value=2.3e+02 Score=20.77 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
+.++.+++........+|...+..+.+|.-++++...-=|..||
T Consensus 16 ~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~QE~~rK 59 (65)
T 3t97_B 16 SEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRK 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444455555666666666666666666655554443
No 216
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.32 E-value=1.6e+02 Score=19.07 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 021637 172 ELSAERARILR 182 (310)
Q Consensus 172 el~elkdk~lR 182 (310)
+..++.+...|
T Consensus 16 ~~~~l~nEv~R 26 (34)
T 2r2v_A 16 KLYHNANELAR 26 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 33333333333
No 217
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.24 E-value=5.4e+02 Score=24.92 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhchhhc---ch----hhHhhhhHHHHHHHHHHHH
Q 021637 204 NAQGEVMERLLQVLDNFERAKTQIKVQ---TE----GEEKINNSYQSIYKQLVEI 251 (310)
Q Consensus 204 ~A~~~~ikdLLpVlDnLERAl~~~~~~---~e----~~~~l~~Gv~mi~kqL~~v 251 (310)
..++..|++++--+-.||.++..-... .. ..+-=++.|+-++|||..+
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhh
Confidence 445555555555555566655321100 00 0111136677778887776
No 218
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.18 E-value=3.1e+02 Score=22.07 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021637 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (310)
Q Consensus 145 ~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkd 178 (310)
+..+...+...++-+...+.++.+|++++...+.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555544433
No 219
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.97 E-value=4.2e+02 Score=23.46 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~ 203 (310)
+..++.++..+..++...++.|......+..+|.+...+.....+
T Consensus 194 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (312)
T 3abh_A 194 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (312)
T ss_dssp HHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555666666677777777777777777777665554433
No 220
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=21.95 E-value=3.1e+02 Score=21.98 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 021637 160 IDLERKVVNLSEELSAERARILRISAD-FDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQ 226 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~AD-feN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~ 226 (310)
..|-++..--++++.+...++.++.++ -+.|.=+-++++.+-....+-...+.|-..+++|+..+..
T Consensus 18 kRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 18 KRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555556666666654 4568888888888888888888888888889999888764
No 221
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.88 E-value=1.9e+02 Score=20.98 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=17.9
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021637 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (310)
Q Consensus 142 ~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~el 176 (310)
+++++++=.--..+.+|+.-++.+|..|+.+...+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 44555554333444555555555555555554433
No 222
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.72 E-value=86 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~ 183 (310)
++|+.++..|+.+...|..++..+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 223
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.38 E-value=5.7e+02 Score=24.80 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 021637 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (310)
Q Consensus 181 lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl 224 (310)
+...-|.+|.-..+..+++.-+.|...++...|- -|..|...+
T Consensus 101 ~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l 143 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNV 143 (390)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 3444566666666666777666666666554443 444444443
No 224
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=21.27 E-value=4.1e+02 Score=23.19 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (310)
Q Consensus 159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~ 202 (310)
...++.++..+..++...++.|......+..++.+...+...+.
T Consensus 172 ~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~ 215 (290)
T 3i2w_A 172 VKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVF 215 (290)
T ss_dssp ----CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444445555566677777777777777777777666655543
No 225
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.01 E-value=1.8e+02 Score=23.06 Aligned_cols=23 Identities=30% Similarity=0.140 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021637 158 EKIDLERKVVNLSEELSAERARI 180 (310)
Q Consensus 158 E~~~L~~el~~Le~el~elkdk~ 180 (310)
+++.|+.+|+.|+.+...|+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 226
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.97 E-value=2.8e+02 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 157 DEKIDLERKVVNLSEELSAERARIL 181 (310)
Q Consensus 157 ~E~~~L~~el~~Le~el~elkdk~l 181 (310)
.|+..|.+.|..|++++..+|..+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 227
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.75 E-value=1.4e+02 Score=18.50 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 021637 162 LERKVVNLSEELS 174 (310)
Q Consensus 162 L~~el~~Le~el~ 174 (310)
|+.++..|+++++
T Consensus 13 lesklqalekkle 25 (31)
T 3ljm_A 13 LESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 228
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=20.74 E-value=2.9e+02 Score=21.20 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHhcCC------ChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 123 TSFIMETLQSYKEALASN------DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (310)
Q Consensus 123 ~~~~~~~~r~y~ea~~~~------~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~R 191 (310)
...|..++...+.+-..+ ++..+.++=..+-.+.-++..+-.+-...++++..+.+++.++...|+.+-
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~ll 83 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLM 83 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777665433 233444444445555555555555555566666666666666666666543
No 229
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.68 E-value=2.5e+02 Score=24.65 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=24.3
Q ss_pred HHHHHHHhcC---CChhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 130 LQSYKEALAS---NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (310)
Q Consensus 130 ~r~y~ea~~~---~~~~~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR 182 (310)
+--|+.++.. +++.-++.+..+...+..++.....+|+.|+++++.++.+..+
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3446665542 3444566666655666666666666666666666666655544
No 230
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.68 E-value=2.8e+02 Score=20.90 Aligned_cols=39 Identities=5% Similarity=-0.019 Sum_probs=18.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (310)
Q Consensus 149 e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADf 187 (310)
+.++...+.++..++..+...++...++..++..+.++.
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544444444444444444333
No 231
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.58 E-value=2.4e+02 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 160 IDLERKVVNLSEELSAERARILRISADFDNFRK 192 (310)
Q Consensus 160 ~~L~~el~~Le~el~elkdk~lR~~ADfeN~RK 192 (310)
..++.++..|+++...|+.++..+..++.-+|.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554443
No 232
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.56 E-value=1.2e+02 Score=22.26 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021637 161 DLERKVVNLSEELSAERAR 179 (310)
Q Consensus 161 ~L~~el~~Le~el~elkdk 179 (310)
.|+.++..|+.++..++.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 233
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.53 E-value=4.5e+02 Score=23.85 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=15.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERAR 179 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk 179 (310)
+..++.++.+++.++..+++++..+.++
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554
No 234
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.35 E-value=3.4e+02 Score=21.85 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (310)
Q Consensus 146 ~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~ 195 (310)
.+++.-....+.-+..|+..|..|+.++++.+.....+.-|.+++|.-.+
T Consensus 29 ~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 29 AQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 235
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.30 E-value=84 Score=24.76 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=8.1
Q ss_pred CCCCCCceeEEeccceee
Q 021637 282 VLDEFSQILNQVCSGFVK 299 (310)
Q Consensus 282 d~ee~gtVv~V~qkGY~L 299 (310)
..++ |+=+-+-+..|.+
T Consensus 74 ~Lkp-G~rVaLn~~s~~I 90 (109)
T 2wg5_A 74 ELKP-GARVALNQQTLAI 90 (109)
T ss_dssp TCCT-TCEEEEETTTCCE
T ss_pred HCCC-CCEEEECCcceEe
Confidence 3444 4544444445544
No 236
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.16 E-value=3.7e+02 Score=22.18 Aligned_cols=102 Identities=12% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchh
Q 021637 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISA---DFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228 (310)
Q Consensus 152 l~~~~~E~~~L~~el~~Le~el~elkdk~lR~~A---DfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~ 228 (310)
+...=+++..++..|..+...+..++....+.+. +...+++++..-..++...+.. ++..|-.++..-.......
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~--ik~~Lk~l~~~~~~~~~~~ 115 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANK--VRGKLKTIELNIEQEEHSN 115 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhccC
Q ss_pred hcchhhHhhhhHHHHHHHHHHHHHHhC
Q 021637 229 VQTEGEEKINNSYQSIYKQLVEILGSL 255 (310)
Q Consensus 229 ~~~e~~~~l~~Gv~mi~kqL~~vL~k~ 255 (310)
.......--..-+..+.+.|.+++..|
T Consensus 116 ~~s~~~Rir~~q~~~L~~kf~~~m~~y 142 (180)
T 1s94_A 116 KSSADLRIRKTQYSTISRKFVEVMSDY 142 (180)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
No 237
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=20.16 E-value=3.7e+02 Score=27.37 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=23.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021637 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (310)
Q Consensus 144 ~~~e~e~~l~~~~~E~~~L~~el~~Le~el~elkdk~lR~ 183 (310)
+..+++..++.+......+++.+..|+..-+++.=+|...
T Consensus 3 ~~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~ 42 (575)
T 1bf5_A 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTL 42 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666666666666666666666666555544444433
No 238
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=20.12 E-value=2.6e+02 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021637 183 ISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (310)
Q Consensus 183 ~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdL 213 (310)
.+.+++|..||.+++ .+.+..+.++.++|
T Consensus 157 y~v~~e~~~r~~eQ~--~mv~wV~~~V~k~i 185 (214)
T 2cly_A 157 YHISVQNMMRQKEQE--HMINWVEKRVVQSI 185 (214)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 345566666665443 44455555555544
Done!