BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021640
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 175 TQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
T+ H+ S CPVC++ + LG RQ+PCNH++H CIVPWL QH+SCPVCR+ L
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 68.2 bits (165), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 159 PPAARSAIDAMPTVRITQRH--LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWL 216
PPA++ +IDA+P + +T+ H + + CP+C ++ G A ++PC+H +H C+ WL
Sbjct: 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
Query: 217 VQHNSCPVCRQELP 230
+ +CPVCR P
Sbjct: 75 QKSGTCPVCRCMFP 88
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
C +C E G + R++PC H++H C+ WL+ + CP+CR ++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 169 MPTVRIT-QRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQ 227
+P+ R H + C VC FE R +PCNH +H+ C+ WL + +CP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
Query: 228 E 228
+
Sbjct: 69 D 69
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 185 CPVCQDKFELGSEARQMP-CNHIYHSDCIVPWLVQHNSCPVCR 226
C VC + E G EAR +P C H +H++C+ WL H++CP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVC 225
C VC + F+ E PC H +H C++ WL CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 155 RRGPPPAARSAIDAMPTVRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVP 214
+R P A ++ + ++ R L S+ CP+C D + ++ C H + +DCI+
Sbjct: 11 QRTPQEAITDGLE----IVVSPRSLHSELMCPICLDMLKNTMTTKE--CLHRFCADCIIT 64
Query: 215 WLVQHN-SCPVCRQEL 229
L N CP CR++L
Sbjct: 65 ALRSGNKECPTCRKKL 80
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 203 CNHIYHSDCIVPWLVQHNSCPVCRQE 228
CNH +H+ C+ W+ Q+N CP+C+Q+
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 172 VRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNS-CPVCRQEL 229
+ ++ R L S+ CP+C D + ++ C H + +DCI+ L N CP CR++L
Sbjct: 43 IVVSPRSLHSELMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKL 99
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 172 VRITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNS-CPVCRQEL 229
+ ++ R L S+ CP+C D + ++ C H + +DCI+ L N CP CR++L
Sbjct: 44 IVVSPRSLHSELMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKL 100
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230
L ++ C +C + F EA + C H + S CI W+ + CP+CR+++
Sbjct: 50 LENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230
L ++ C +C + F EA + C H + S CI W+ + CP+CR+++
Sbjct: 61 LENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 230
L ++ C +C + F EA + C H + S CI W+ + CP+CR+++
Sbjct: 50 LENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 185 CPVCQDKF-ELGSEAR---QMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
CP+C D + E+ R C H++ S C+ L N+CP CR+++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 185 CPVCQDKF-ELGSEAR---QMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
CP+C D + E+ R C H++ S C+ L N+CP CR+++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 185 CPVCQDKF-ELGSEAR---QMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
CP+C D + E+ R C H++ S C+ L N+CP CR+++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 177 RHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
+ L + C +C D G +PC H + CI W +H +CP+CR ++
Sbjct: 10 KQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCR 226
CP+C + + + + +PC H + CI W+ Q+ +CP+C+
Sbjct: 8 CPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 167 DAMPTVRITQRHLR--------SDSHCPVCQDKF-ELGSEARQM---PCNHIYHSDCIVP 214
+ PT R H R CP+C D + E+ R + C H++ S C+
Sbjct: 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 108
Query: 215 WLVQHNSCPVCRQEL 229
L N+CP CR+++
Sbjct: 109 SLKNANTCPTCRKKI 123
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 185 CPVCQDKF-ELGSEARQM---PCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
CP+C D + E+ R + C H++ S C+ L N+CP CR+++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 181 SDSHCPVC-QDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVC 225
S +CP+C +D A +PC H+ H C L + CP+C
Sbjct: 4 SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 184 HCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH---NSCPVCRQEL 229
CP+C EL E C+HI+ C++ L Q + CP+C+ ++
Sbjct: 23 ECPIC---LELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.2 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 203 CNHIYHSDCIVPWLVQHNSCPVCRQE 228
CNH +H CI WL CP+ +E
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPLDNRE 82
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 203 CNHIYHSDCIVPWLVQHNSCPVCRQE 228
CNH +H CI WL CP+ +E
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNRE 92
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 203 CNHIYHSDCIVPWLVQHNSCPVCRQE 228
CNH +H CI WL CP+ +E
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNRE 90
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|D Chain D, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 285
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 4 GRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDD-MVSVSPLDFFG-LDNDEERDQRL 61
N + C+ C + L + G E D M S +PLDF L+ E+ Q+
Sbjct: 46 AENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKT 105
Query: 62 GLMEA 66
GL EA
Sbjct: 106 GLKEA 110
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 182 DSHCPVC-QDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVC 225
S CP+C +D A +PC H+ H C L + CP+C
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 178 HLRSDSHCPVCQDKFELGSE-----------------ARQMPCNHIYHSDCIVPWLVQH- 219
H+ SD H V Q+++EL E + PC H+ + C+ W
Sbjct: 3 HMGSD-HIKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDG 61
Query: 220 NSCPVCRQEL 229
CP CR E+
Sbjct: 62 QGCPFCRCEI 71
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVC 225
C +C + F + Q C+H Y S CI +L CP C
Sbjct: 25 CGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWL-VQHNSCPVCRQEL 229
C +C E + + PC H+ + C+ W + CP CR E+
Sbjct: 27 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 18/64 (28%)
Query: 184 HCPVCQDKFELGSE-----------------ARQMPCNHIYHSDCIVPWL-VQHNSCPVC 225
H V Q++FEL E + PC H+ + C+ W + CP C
Sbjct: 9 HIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
Query: 226 RQEL 229
R E+
Sbjct: 69 RCEI 72
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 18/64 (28%)
Query: 184 HCPVCQDKFELGSE-----------------ARQMPCNHIYHSDCIVPWLVQH-NSCPVC 225
H V Q++FEL E + PC H+ + C+ W CP C
Sbjct: 316 HIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
Query: 226 RQEL 229
R E+
Sbjct: 376 RCEI 379
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 177 RHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
R L+ + C VC DK +PC H+ P L CP+CR +
Sbjct: 19 RRLQEERTCKVCMDK---EVSIVFIPCGHLVVCKDCAPSL---RKCPICRSTI 65
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 201 MPCNHIYHSDCI--VPWLVQHNSCPVCRQELP 230
+PC H++ C+ WL + C +CRQE+P
Sbjct: 31 LPCKHVFCYLCVKGASWLGKR--CALCRQEIP 60
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPVCRQEL 229
C +C + + + PC H+ + C+ W CP CR E+
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPVCRQEL 229
C +C + + + PC H+ + C+ W CP CR E+
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPVCRQEL 229
C +C + + + PC H+ + C+ W CP CR E+
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 177 RHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCR 226
R L+ + C VC DK +PC H+ P L CP+CR
Sbjct: 290 RRLQEERTCKVCMDK---EVSVVFIPCGHLVVCQECAPSL---RKCPICR 333
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 185 CPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPVCRQEL 229
C +C E + + PC H+ + C+ W CP CR E+
Sbjct: 341 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 27.7 bits (60), Expect = 9.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 173 RITQRHLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 229
R+ Q LR +C E + PC H + C Q SCPVCR +
Sbjct: 6 RVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGH---TVCCESCAAQLQSCPVCRSRV 59
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 179 LRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQH-NSCPV 224
L S CP+C EA Q PC H + CI+ + + CPV
Sbjct: 22 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPV 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,049,921
Number of Sequences: 62578
Number of extensions: 370268
Number of successful extensions: 820
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 47
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)