Your job contains 1 sequence.
>021642
MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDA
RYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG
DWKNKCYRCGERGHIERNCQNSPKKLRPRSYSRSPSPRRGRSRSRSYSRGRSDSRSRSPV
KRDRSVERFERRTRSPRDSRSPKRRRNSPPSSKGRKRSPTPDERSPQDQRSPSPRDRRQA
NGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENGRSRSRSLSPVPRDDRSPIDDDDNH
GDPRGSESN
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021642
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 651 5.3e-69 2
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 637 1.4e-68 2
UNIPROTKB|E1BVX5 - symbol:LOC100859609 "Uncharacterized p... 201 2.6e-23 2
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"... 208 1.4e-22 2
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl... 223 6.0e-22 2
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 196 1.1e-21 2
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 196 1.1e-21 2
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 223 1.6e-21 2
UNIPROTKB|D4A720 - symbol:Sfrs7 "Protein Sfrs7" species:1... 223 4.1e-21 2
UNIPROTKB|E1BRL9 - symbol:LOC100859609 "Uncharacterized p... 185 5.2e-21 2
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 210 6.6e-21 2
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 194 1.1e-20 2
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 194 1.1e-20 2
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 207 2.8e-20 2
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 214 4.2e-20 2
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 210 4.5e-20 2
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 210 4.5e-20 2
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 210 4.5e-20 2
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 210 5.8e-20 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 210 5.8e-20 2
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 210 5.8e-20 2
ZFIN|ZDB-GENE-040426-1798 - symbol:zgc:77155 "zgc:77155" ... 181 5.8e-20 2
UNIPROTKB|F1S4R5 - symbol:SRSF7 "Uncharacterized protein"... 201 1.2e-19 2
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 197 1.9e-19 2
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 210 1.9e-19 2
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 202 2.0e-19 2
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 190 3.7e-19 2
ZFIN|ZDB-GENE-050913-95 - symbol:srsf7 "serine/arginine-r... 203 3.9e-19 2
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 203 4.8e-19 2
MGI|MGI:1926232 - symbol:Srsf7 "serine/arginine-rich spli... 203 5.0e-19 2
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 191 5.0e-19 2
FB|FBgn0028554 - symbol:x16 species:7227 "Drosophila mela... 190 5.0e-19 2
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 202 5.2e-19 2
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 206 5.2e-19 2
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 202 1.1e-18 2
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 199 1.2e-18 2
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 193 1.3e-18 2
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 201 1.7e-18 2
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 193 1.7e-18 2
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 193 1.7e-18 2
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 193 1.7e-18 2
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 193 1.7e-18 2
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 193 1.7e-18 2
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 193 1.7e-18 2
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 193 1.7e-18 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 206 1.7e-18 2
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 223 1.7e-18 1
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 223 1.7e-18 1
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 192 2.1e-18 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 206 2.1e-18 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 206 2.1e-18 2
RGD|1307425 - symbol:Srsf7 "serine/arginine-rich splicing... 222 2.2e-18 1
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 206 2.2e-18 2
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 195 4.2e-18 2
UNIPROTKB|F1LZA3 - symbol:F1LZA3 "Uncharacterized protein... 182 5.5e-18 2
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 196 6.1e-18 2
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 196 6.1e-18 2
UNIPROTKB|E1BY00 - symbol:SRSF5 "Uncharacterized protein"... 186 8.9e-18 2
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 185 1.8e-17 2
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 170 1.8e-17 2
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 170 1.8e-17 2
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl... 153 2.3e-17 2
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 171 2.7e-17 2
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 210 4.1e-17 1
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 210 4.1e-17 1
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 210 4.1e-17 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 210 4.1e-17 1
DICTYBASE|DDB_G0284245 - symbol:DDB_G0284245 "CCHC-type z... 190 4.3e-17 2
UNIPROTKB|F1M8R2 - symbol:F1M8R2 "Uncharacterized protein... 172 7.7e-17 2
TAIR|locus:2124799 - symbol:RSZ22 "RS-containing zinc fin... 164 7.7e-17 2
TAIR|locus:2046638 - symbol:RSZ22a "RS-containing zinc fi... 149 7.7e-17 2
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 206 1.1e-16 1
DICTYBASE|DDB_G0280393 - symbol:DDB_G0280393 "CCHC-type z... 173 1.5e-16 2
TAIR|locus:2199837 - symbol:RSZ21 "RS-containing zinc fin... 151 1.6e-16 2
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 203 2.3e-16 1
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 202 2.9e-16 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 164 3.4e-16 2
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 166 5.1e-16 2
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 163 6.4e-16 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 163 6.4e-16 2
FB|FBgn0011640 - symbol:lark "lark" species:7227 "Drosoph... 178 1.3e-15 2
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 193 2.6e-15 1
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 161 3.5e-15 2
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 158 3.5e-15 2
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 158 3.5e-15 2
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 158 3.5e-15 2
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 158 3.5e-15 2
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 158 3.5e-15 2
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 158 3.5e-15 2
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 189 6.9e-15 1
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 189 6.9e-15 1
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 189 6.9e-15 1
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd... 149 9.2e-15 2
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor... 149 9.2e-15 2
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 186 1.4e-14 1
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 185 1.8e-14 1
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 151 1.9e-14 2
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 184 2.3e-14 1
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 158 3.0e-14 2
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 150 3.5e-14 3
WARNING: Descriptions of 380 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 651 (234.2 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 115/146 (78%), Positives = 128/146 (87%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDA 60
MPRYDDRYG TRLYVGRL+SRTR+RDLE +FSRYGR+RDVDMKRD+AFVEF DPRDADDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60
Query: 61 RYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
R+ L+GRD DGSRI VEF+ SR++ RGPPPG+GRCFNCG+DGHWARDC AG
Sbjct: 61 RHYLDGRDFDGSRITVEFSRGAPRG---SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAG 117
Query: 121 DWKNKCYRCGERGHIERNCQNSPKKL 146
DWKNKCYRCGERGHIERNC+NSPKKL
Sbjct: 118 DWKNKCYRCGERGHIERNCKNSPKKL 143
Score = 67 (28.6 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 224 RSPQDQRSPSPRDR-RQANGSEYSGSPRGKSRSPV-DDADGPEDRNYRSPP 272
RSP +R S +R R + S SPR + RSPV DD P+ + PP
Sbjct: 179 RSPVRRRERSVEERSRSPKRMDDSLSPRARDRSPVLDDEGSPKIIDGSPPP 229
Score = 66 (28.3 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 222 DERSPQ--D-QRSPSPRDRRQANGSEYSGSPRGKSR----SPVDDADGPEDRNYRSPPEE 274
DE SP+ D PSP+ +++ GSP+ R SPV A G + RSP ++
Sbjct: 216 DEGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPVDD 275
Query: 275 N 275
+
Sbjct: 276 D 276
Score = 60 (26.2 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RSP RS SPR RR + S +SRSPV + + RSP
Sbjct: 151 RSPV--RSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSP 196
Score = 54 (24.1 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP--------RGKSRSP--VDDADGPEDRNYRSP 271
RSP+ +RSPS R ++ S SP +SRSP +DD+ P R+ RSP
Sbjct: 157 RSPRRRRSPS-RSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRARD-RSP 212
Score = 43 (20.2 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 28/99 (28%), Positives = 34/99 (34%)
Query: 224 RSPQ---DQRSPSPRDRRQANGSEYSGSPR----GKSRSPVDDADGPEDRNYRSPPEENG 276
RSP+ D SP RDR E GSP+ SP + DR+ SP ++NG
Sbjct: 194 RSPKRMDDSLSPRARDRSPVLDDE--GSPKIIDGSPPPSPKLQKEVGSDRDGGSP-QDNG 250
Query: 277 XXXXXXXXXXXXXXXXXXXXXX-------NHGDPRGSES 308
N PRGSES
Sbjct: 251 RNSVVSPVVGAGGDSSKEDRSPVDDDYEPNRTSPRGSES 289
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 637 (229.3 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 114/143 (79%), Positives = 123/143 (86%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDA 60
MPRYDDRYG TRLYVGRL+SRTR+RDLE +FSRYGR+RDVDMKRD+AFVEFSDPRDADDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
Query: 61 RYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
RY L+GRD DGSRI VE SR+ RGPPPGSGRCFNCG+DGHWARDC AG
Sbjct: 61 RYYLDGRDFDGSRITVE---ASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAG 117
Query: 121 DWKNKCYRCGERGHIERNCQNSP 143
DWKNKCYRCGERGHIERNC+NSP
Sbjct: 118 DWKNKCYRCGERGHIERNCKNSP 140
Score = 77 (32.2 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RSP+ +RSPS R R + G YS +SRSPV EDR+ RSP
Sbjct: 159 RSPRRRRSPS-RSRSYSRGRSYS-----RSRSPVRREKSVEDRS-RSP 199
Score = 67 (28.6 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 224 RSPQDQRSPSPRDR-RQANGSEYSGSPRGK--SRSP---VDDADGPEDRNYRSPPEENG 276
RSP +R S DR R E S SP+G+ S SP V DA +Y P+ENG
Sbjct: 183 RSPV-RREKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDGSPKENG 240
Score = 63 (27.2 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
+ SPSP+ RQ G YS SP KSRSP R+Y
Sbjct: 137 KNSPSPKKARQ--GGSYSRSPV-KSRSPRRRRSPSRSRSY 173
Score = 46 (21.3 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 227 QDQR-SPSPR--DRRQANGSEYSGSPR--GKSR---SP-VDDADGPEDRNY--RSPPEE 274
+DQ SP + D GS+Y GSP+ G R SP V + P N RSP ++
Sbjct: 211 RDQSLSPDRKVIDASPKRGSDYDGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDD 269
Score = 41 (19.5 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 242 GSEYSGSPRGKSRSPVDDA---DGPEDRNYRSP 271
G E G+ RSP+DD P + SP
Sbjct: 252 GGESPVGLNGQDRSPIDDEAELSRPSPKGSESP 284
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 201 (75.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 51/121 (42%), Positives = 64/121 (52%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A S R + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AKPLLKSSKSRVICGSRVRVEVSTGMPRRSRYDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 C 117
C
Sbjct: 119 C 119
Score = 82 (33.9 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 26/131 (19%), Positives = 38/131 (29%)
Query: 121 DWKNKCYRCGERGHIERNCQNSPKKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 180
D ++CY CGE+GH +C ++
Sbjct: 101 DPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSRSRSRGRRYSRSRSRSRGRRSRSASY 160
Query: 181 KRDRSVERFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDERSPQDQ-RSPSPRDRRQ 239
+R RSV RS + + RSPSP+ R
Sbjct: 161 RRSRSVSPRRSRSVSPRRSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSPSPKRSRS 220
Query: 240 ANGS-EYSGSP 249
+GS + S SP
Sbjct: 221 PSGSPQRSASP 231
Score = 50 (22.7 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
SP+ RS SPR R +GS R +SRS P +S
Sbjct: 167 SPRRSRSVSPR--RSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKS 210
Score = 45 (20.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 224 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 256
RS +RS S R R ++ + S R KSRSP
Sbjct: 180 RSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSP 213
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 208 (78.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 51/120 (42%), Positives = 67/120 (55%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDA 57
M RY RY T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRDA
Sbjct: 1 MSRYG-RYE-TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA 58
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A DC
Sbjct: 59 EDAVLGLDGKIICGSRVRVEVSTGMPRRSRYDRPP-ARRPFDPNDRCYECGEKGHYAYDC 117
Score = 68 (29.0 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 21/124 (16%), Positives = 33/124 (26%)
Query: 121 DWKNKCYRCGERGHIERNCQNSPKKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 180
D ++CY CGE+GH +C ++
Sbjct: 99 DPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSRSRSRGRRYSRSRSRSRGRRSRSASY 158
Query: 181 KRDRSVERFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDERSPQDQ-RSPSPRDRRQ 239
+R RS+ RS + + RSPSP+
Sbjct: 159 RRSRSISPRRYRSFSPRRSRSGSLRRSRSRSRSRSRSRSVVWPRSSRSKSRSPSPKRSHS 218
Query: 240 ANGS 243
+GS
Sbjct: 219 PSGS 222
Score = 46 (21.3 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
SP+ RS SPR R +GS R +SRS
Sbjct: 165 SPRRYRSFSPR--RSRSGSLRRSRSRSRSRS 193
Score = 44 (20.5 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 224 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 256
RS +RS S R R ++ + S R KSRSP
Sbjct: 178 RSGSLRRSRSRSRSRSRSRSVVWPRSSRSKSRSP 211
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 223 (83.6 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 56/138 (40%), Positives = 74/138 (53%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 CKAGDWKNKCYRCGERGH 134
C + + R R H
Sbjct: 119 CHRYSRRRRS-RSRSRSH 135
Score = 47 (21.6 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
S RSPSP+ R SGSPR +S SP
Sbjct: 209 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 234
Score = 44 (20.5 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSP 256
+SPS R R ++ S R KSRSP
Sbjct: 191 QSPS-RSRSRSRSISRPRSSRSKSRSP 216
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 196 (74.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL SR +D+E F YG+IRDV +K F FVEF D RDA+DA + LNG+++ G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 72 SRIIVEFA 79
R+I++++
Sbjct: 64 ERVILDYS 71
Score = 74 (31.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 224 RSPQD-QRSPSPRDRRQANGSEYSGSPR-GKSRSPVDDADG 262
RSP+ RSPSP R + SE GSPR +S SP+D+ DG
Sbjct: 272 RSPKKVDRSPSP-PRGSRSPSE-KGSPRRSRSASPMDNGDG 310
Score = 58 (25.5 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 23/62 (37%), Positives = 27/62 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS---------PRGKSRSP--VDDADGPEDRNYRSPP 272
RS RSP R RR++ S S R SRSP VD + P R RSP
Sbjct: 233 RSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPP-RGSRSPS 291
Query: 273 EE 274
E+
Sbjct: 292 EK 293
Score = 48 (22.0 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 224 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 256
RS RS S RDRR++ S S + +SRSP
Sbjct: 209 RSNSRSRSRSRSRDRRRSR-SRSSSRSKSRSRSP 241
Score = 41 (19.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 231 SPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 275
S + R R ++N S S R + RS + + R+ RSPP+ +
Sbjct: 201 SQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRS-RSPPKRS 245
Score = 35 (17.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 222 DERSPQDQRSPSPRD 236
++ SP+ RS SP D
Sbjct: 292 EKGSPRRSRSASPMD 306
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 196 (74.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL SR +D+E F YG+IRDV +K F FVEF D RDA+DA + LNG+++ G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 72 SRIIVEFA 79
R+I++++
Sbjct: 64 ERVILDYS 71
Score = 74 (31.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 224 RSPQD-QRSPSPRDRRQANGSEYSGSPR-GKSRSPVDDADG 262
RSP+ RSPSP R + SE GSPR +S SP+D+ DG
Sbjct: 272 RSPKKVDRSPSP-PRGSRSPSE-KGSPRRSRSASPMDNGDG 310
Score = 58 (25.5 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 23/62 (37%), Positives = 27/62 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS---------PRGKSRSP--VDDADGPEDRNYRSPP 272
RS RSP R RR++ S S R SRSP VD + P R RSP
Sbjct: 233 RSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPP-RGSRSPS 291
Query: 273 EE 274
E+
Sbjct: 292 EK 293
Score = 48 (22.0 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 224 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 256
RS RS S RDRR++ S S + +SRSP
Sbjct: 209 RSNSRSRSRSRSRDRRRSR-SRSSSRSKSRSRSP 241
Score = 41 (19.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 231 SPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 275
S + R R ++N S S R + RS + + R+ RSPP+ +
Sbjct: 201 SQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRS-RSPPKRS 245
Score = 35 (17.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 222 DERSPQDQRSPSPRD 236
++ SP+ RS SP D
Sbjct: 292 EKGSPRRSRSASPMD 306
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 223 (83.6 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 56/138 (40%), Positives = 74/138 (53%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 CKAGDWKNKCYRCGERGH 134
C + + R R H
Sbjct: 119 CHRYSRRRRS-RSRSRSH 135
Score = 43 (20.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS +RS S RR +GS R +SRS P +S
Sbjct: 164 RSVSLRRSRSASLRRSRSGSIKGSRSRSRSRSRSRSLSRPRSSRSKS 210
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 223 (83.6 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 56/138 (40%), Positives = 74/138 (53%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 CKAGDWKNKCYRCGERGH 134
C + + R R H
Sbjct: 119 CHRYSRRRRS-RSRSRSH 135
Score = 39 (18.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 235 RDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNYRSP-PE 273
R R ++ S R KSRSP P +RS PE
Sbjct: 195 RSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPE 235
>UNIPROTKB|E1BRL9 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
ArrayExpress:E1BRL9 Uniprot:E1BRL9
Length = 226
Score = 185 (70.2 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 50/122 (40%), Positives = 64/122 (52%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNG-RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWAR 115
A S + + GSR+ VE + R R P + RC+ CG GH+A
Sbjct: 60 AXXXXASKPLLKVICGSRVRVEVSTGMPRRSRYDRPP-ARRPFDPNDRCYECGEKGHYAY 118
Query: 116 DC 117
DC
Sbjct: 119 DC 120
Score = 76 (31.8 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 23/124 (18%), Positives = 34/124 (27%)
Query: 121 DWKNKCYRCGERGHIERNCQNSPKKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 180
D ++CY CGE+GH +C ++
Sbjct: 102 DPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSRSRSRGRRYSRSRSRSRGRRSRSASY 161
Query: 181 KRDRSVERFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDERSPQDQ-RSPSPRDRRQ 239
+R RSV RS + + RSPSP+ R
Sbjct: 162 RRSRSVSPRRSRSVSPRRSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSPSPKRSRS 221
Query: 240 ANGS 243
+GS
Sbjct: 222 PSGS 225
Score = 50 (22.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
SP+ RS SPR R +GS R +SRS P +S
Sbjct: 168 SPRRSRSVSPR--RSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKS 211
Score = 45 (20.9 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 224 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 256
RS +RS S R R ++ + S R KSRSP
Sbjct: 181 RSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSP 214
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 210 (79.0 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 47/111 (42%), Positives = 66/111 (59%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL+ R RD+E+ F YGRIR++++K F FVEF D RDADDA Y LNG+++
Sbjct: 3 GCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKEL 62
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
R+ +E A SR GRG PG G F+ G+ R ++G
Sbjct: 63 CSERVTIEHAR--------SRR--GRGGGPGMGGRFSPRFGGY--RQSRSG 101
Score = 50 (22.7 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RSPS R R GS+ S S R SR+P
Sbjct: 197 RSSSRSRSPS-RSRSPERGSKRSRS-RSLSRTP 227
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 194 (73.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL +R RD+E F YG++ DV MK F FV+F D RDADDA + LNG+++ G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 72 SRIIVEF 78
R+I+EF
Sbjct: 63 ERVILEF 69
Score = 64 (27.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 223 ERSPQDQRSPSPR---DRRQANGSEY---SGSPRGKSRSPVDDADGPEDRNYRSPP 272
+RS + RS SP+ D+R + S+ SG R +S SP + + P+ R S P
Sbjct: 219 DRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSP 274
Score = 59 (25.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
RS SPR R ++ S SP + RSP D + R+ SP + +
Sbjct: 190 RSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRS-ASPKKRS 234
Score = 52 (23.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 261
RS RS SP RR++ GS+ S + +S SP +D
Sbjct: 199 RSRSPTRSRSPPARRRSPGSDRSDR-KSRSASPKKRSD 235
Score = 49 (22.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
+RS + RS S R S SP +S SP D R+ + P
Sbjct: 232 KRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP 281
Score = 36 (17.7 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 250 RGKSRSPVDDADGPEDRNYRSPP 272
R +SRSP + RSPP
Sbjct: 188 RSRSRSPRRRSRSRSPTRSRSPP 210
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 194 (73.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL +R RD+E F YG++ DV MK F FV+F D RDADDA + LNG+++ G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 72 SRIIVEF 78
R+I+EF
Sbjct: 63 ERVILEF 69
Score = 64 (27.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 223 ERSPQDQRSPSPR---DRRQANGSEY---SGSPRGKSRSPVDDADGPEDRNYRSPP 272
+RS + RS SP+ D+R + S+ SG R +S SP + + P+ R S P
Sbjct: 219 DRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSP 274
Score = 59 (25.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
RS SPR R ++ S SP + RSP D + R+ SP + +
Sbjct: 190 RSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRS-ASPKKRS 234
Score = 52 (23.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 261
RS RS SP RR++ GS+ S + +S SP +D
Sbjct: 199 RSRSPTRSRSPPARRRSPGSDRSDR-KSRSASPKKRSD 235
Score = 49 (22.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
+RS + RS S R S SP +S SP D R+ + P
Sbjct: 232 KRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP 281
Score = 36 (17.7 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 250 RGKSRSPVDDADGPEDRNYRSPP 272
R +SRSP + RSPP
Sbjct: 188 RSRSRSPRRRSRSRSPTRSRSPP 210
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 207 (77.9 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDA+DA Y L+G+++
Sbjct: 3 GCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CNERVTIEHA 72
Score = 47 (21.6 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDA 260
+ SP PR R ++ S S R +SRSP D+
Sbjct: 244 ESASPPASAQHPPRSRSRSRSRSRSRSRSRSRSRSPSTDS 283
Score = 42 (19.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS SP +R ++ S SP +P ++ P + + PP
Sbjct: 209 RSRSRSHSPKSHNRSRSRSRSASASPVRPKEAPRPESASPP-ASAQHPP 256
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 214 (80.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 45/96 (46%), Positives = 58/96 (60%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
+R+YVG+L+ R R +D+E F YG+I +VD+K + FVEF DPRDADDA Y LNG+D+
Sbjct: 2 SRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLC 61
Query: 71 GSRIIVEFAXXXXXX----XXXSREYLGRGPPPGSG 102
G R+IVE S Y GRG G G
Sbjct: 62 GKRVIVEHTIGQRRDGGNRSGRSNRY-GRGGGGGGG 96
Score = 45 (20.9 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 224 RSPQDQRSPSPRDRRQ---ANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
RS RS S R RR + S SG+ +SRS + + R+ R NG
Sbjct: 190 RSASRSRSRSRRSRRSRSHSRTSSRSGASGSRSRSR-STSKKAKSRSSRMEESSNG 244
Score = 44 (20.5 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 258
RSPQ+++S R+ ++ S S R KSR+ D
Sbjct: 259 RSPQNKKSK--RENKRGRSDSRSRS-RSKSRNDRD 290
Score = 41 (19.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 222 DERSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRS 255
D+R RS S + R + YS S R +SRS
Sbjct: 331 DQRRESRSRSRSRSKSRSHSRSQSYSRS-RSRSRS 364
Score = 41 (19.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 230 RSPSPRDRRQANGSEY---SGSPRGKSRSPVDDADGPEDRNYRS 270
+S S R +NG+ SG SRSP + E++ RS
Sbjct: 232 KSRSSRMEESSNGARKGGDSGRDNSLSRSPQNKKSKRENKRGRS 275
Score = 38 (18.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
R+ RS +P + Q S R KSRS
Sbjct: 317 RAHSRSRSQTPPNADQRRESRSRSRSRSKSRS 348
Score = 35 (17.4 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 222 DERSPQDQRSPSPRDRRQANGSE 244
D RS +S + RD + +GS+
Sbjct: 276 DSRSRSRSKSRNDRDLSRESGSK 298
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 210 (79.0 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 258
+S RSP P ++ Q GS S R KS + VD
Sbjct: 223 KSRSGSRSPVP-EKSQKRGS----SSRSKSPASVD 252
Score = 36 (17.7 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 230 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS S R + R + S R SRSPV + + RS
Sbjct: 202 RSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRS 245
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 210 (79.0 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 258
+S RSP P ++ Q GS S R KS + VD
Sbjct: 223 KSRSGSRSPVP-EKSQKRGS----SSRSKSPASVD 252
Score = 36 (17.7 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 230 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS S R + R + S R SRSPV + + RS
Sbjct: 202 RSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRS 245
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 210 (79.0 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 258
+S RSP P ++ Q GS S R KS + VD
Sbjct: 223 KSRSGSRSPVP-EKSQKRGS----SSRSKSPASVD 252
Score = 36 (17.7 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 230 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS S R + R + S R SRSPV + + RS
Sbjct: 202 RSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRS 245
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 210 (79.0 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 41 (19.5 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS R R R ++ S S R SRSPV + + RS
Sbjct: 203 RSRSRSRKSYSRSRSRSRSRSRSKS-RSVSRSPVPEKSQKRGSSSRS 248
Score = 40 (19.1 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 258
+S RSP P ++ Q GS S R KS + VD
Sbjct: 226 KSRSVSRSPVP-EKSQKRGS----SSRSKSPASVD 255
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 210 (79.0 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 41 (19.5 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
+S RSP P ++ Q GS S R KS + VD RS ++G
Sbjct: 224 KSRSVSRSPVP-EKSQKRGS----SSRSKSPASVDRQRSRSRSRSRSRSVDSG 271
Score = 39 (18.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS RS R ++ S S R SRSPV + + RS
Sbjct: 201 RSRSRSRSRKSYSRSRSRSRSRSKS-RSVSRSPVPEKSQKRGSSSRS 246
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 210 (79.0 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 41 (19.5 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
+S RSP P ++ Q GS S R KS + VD RS ++G
Sbjct: 224 KSRSVSRSPVP-EKSQKRGS----SSRSKSPASVDRQRSRSRSRSRSRSVDSG 271
Score = 39 (18.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS RS R ++ S S R SRSPV + + RS
Sbjct: 201 RSRSRSRSRKSYSRSRSRSRSRSKS-RSVSRSPVPEKSQKRGSSSRS 246
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 181 (68.8 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 45/134 (33%), Positives = 69/134 (51%)
Query: 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADD 59
R R ++YVG L + +LE FS YG +R V + R+ FAFVE+ D RDA+D
Sbjct: 6 RSSSRTSDCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAED 65
Query: 60 ARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC-K 118
A ++G+ + G+R+ VE + R + P + RC+ CG GH+A DC +
Sbjct: 66 AVKGMDGKVLCGARVRVELSNGMSRKSRYGRPSRRQFDP--NDRCYQCGETGHYAYDCYR 123
Query: 119 AGDWKNKCYRCGER 132
+++ R G R
Sbjct: 124 FSKRRSRRSRSGSR 137
Score = 70 (29.7 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 230 RSPSPRDRRQANGS---EYSGSPRGKSRSPVDDADGPEDRNY-RSP 271
RSPS RR +GS S SP G+SRSPV + P R+ R+P
Sbjct: 159 RSPSYSKRRSRSGSPGRSRSRSPGGRSRSPVRRSKSPVRRSRSRTP 204
Score = 43 (20.2 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 235 RDRRQANGSEYSGSPRGKS-RSPVDDADGPEDRNYRSP 271
R RR +GS RG+ RS +R YRSP
Sbjct: 128 RSRRSRSGSRSRSRSRGRRYRS----RSRSNERRYRSP 161
Score = 36 (17.7 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
R+P RD R + S SGS R + RS
Sbjct: 202 RTPLHRDSRSRSRSR-SGS-RQRDRS 225
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 201 (75.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 46/110 (41%), Positives = 62/110 (56%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRDA+DA L+G+
Sbjct: 38 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 97
Query: 68 DVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
+ GSR+ VE + R R P + RC+ CG GH+A DC
Sbjct: 98 VICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYDC 146
Score = 47 (21.6 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
S RSPSP+ R SGSPR +S SP
Sbjct: 239 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 264
Score = 37 (18.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 235 RDRRQANGSEYSGSPRGKSRSP 256
R R ++ S R KSRSP
Sbjct: 225 RSRSRSRSLSRPRSSRSKSRSP 246
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 197 (74.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YG++ +VD+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R++VE A
Sbjct: 63 ERVMVEHA 70
Score = 59 (25.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSP 271
D +S S DR ++ S R +S SP+++ DG ++ RSP
Sbjct: 291 DRKSRSKSTSKVKSDRGRSKEKSVSKKSRSRSASPMENGDGERPKSASRSP 341
Score = 50 (22.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 267
ER RSPSP QA S+Y SP SRS A + R+
Sbjct: 332 ERPKSASRSPSP----QAEQSKYK-SPDRHSRSRSKSASRSKSRS 371
Score = 42 (19.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 234 PRDRRQANGSEYSGSPRGKSRS 255
PR RR +GS R +SRS
Sbjct: 187 PRRRRSYSGSRSRSRSRRRSRS 208
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 RSPSPRDRRQANGSEY-SGSPRGKSRS 255
RS S R R +G + S SP KSRS
Sbjct: 234 RSRSGRRSRSKSGHKSRSKSPSSKSRS 260
Score = 41 (19.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S RR + S S R SRS
Sbjct: 191 RSYSGSRSRSRSRRRSRSRSRRSSRSRSNSRS 222
Score = 35 (17.4 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEY---SGSPRGKSRS 255
RS + RS S R R + S S S R +SRS
Sbjct: 201 RSRRRSRSRSRRSSRSRSNSRSRSRSRSRRHRSRS 235
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 210 (79.0 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
Score = 36 (17.7 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 230 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS S R + R + S R SRSPV + + RS
Sbjct: 203 RSRSRRSKSYSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRS 246
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 202 (76.2 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ ++D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 50 (22.7 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRS 270
P+ R R R ++ E S S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSRSRSRSRSKEYEKSRSRSRSRSRSPKENGKGDIKSKSRS 296
Score = 44 (20.5 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEENG 276
RS + R + ++ GS R +SRS + R+ P+ENG
Sbjct: 233 RSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSKEYEKSRSRSRSRSRSPKENG 286
Score = 41 (19.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS SP + S P+ SRS
Sbjct: 295 RSRSQSRSNSPLPAPPSKARSVSPPPKRASRS 326
Score = 35 (17.4 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 190 (71.9 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+G+L+ R +D++ F YG++ + D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 62 (26.9 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS--PVDDADGPEDRNY-RSP-PEEN 275
RS ++ S RD R + E S S + +SRS P ++ DG ++ RSP P+EN
Sbjct: 272 RSRSRSKAKSERDSR-SRSREKSTSRKSRSRSASPRENGDGERVKSTSRSPSPKEN 326
Score = 50 (22.7 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 223 ERSPQDQRSPSPRDRR-QANGSEYSGSPRGKSRS 255
ER RSPSP++ R Q + R +S+S
Sbjct: 312 ERVKSTSRSPSPKENRHQLESPRKRSASRSRSKS 345
Score = 44 (20.5 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS +RS S R RR + S R +SRS + R YRS
Sbjct: 199 RSRSRRRSRS-RSRRSSRSQSRS---RSRSRSRSKHSRSRSGRKYRS 241
Score = 44 (20.5 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDDADGPEDRNYRSPPEENG 276
++S RS + + R ++ + S R +SRS + + + R+ + P ENG
Sbjct: 256 KKSRSRSRSRTEKSRSRSRSRSKAKSERDSRSRSR-EKSTSRKSRSRSASPRENG 309
Score = 43 (20.2 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS + RS S R R+++ +S R +SRS
Sbjct: 234 RSGRKYRSRS-RSSRKSHSKSHSKKSRSRSRS 264
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S RR + S S + +SRS
Sbjct: 191 RSYSASRSRSRSRRRSRSRSRRSSRSQSRSRS 222
Score = 36 (17.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 234 PRDRRQANGSEYSGSPRGKSRS 255
PR RR + S R +SRS
Sbjct: 187 PRRRRSYSASRSRSRSRRRSRS 208
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 203 (76.5 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 51/138 (36%), Positives = 72/138 (52%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M R+ R+GG T++YVG L + +LE F YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRFG-RHGGETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+D+ L+G+ + GSR+ VE + R P + RC+ CG GH+A D
Sbjct: 60 AEDSVRGLDGKVICGSRVRVELSTGMPRRSRYDHPP-SRRPFDPNDRCYECGEKGHYAYD 118
Query: 117 CKAGDWKNKCYRCGERGH 134
C + + R R H
Sbjct: 119 CHRYSRRRRT-RSRSRSH 135
Score = 40 (19.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 267
RS SPR R +GS SG+ R SRS G R+
Sbjct: 154 RSLSPRSR---SGSARSGT-RTHSRSRSRSHSGSAHRS 187
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 203 (76.5 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ +VD+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 45 (20.9 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRS 270
P+ R R ++ EY S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSHSHSRSRSK-DEYEKSRSRSRSRSPKENGKGDIKSKSRS 295
Score = 42 (19.8 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 261
P RS SP +R + S + +SRS D
Sbjct: 309 PSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSRD 344
Score = 42 (19.8 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEENG 276
RS + R + ++ GS +SRS D+ + R+ P+ENG
Sbjct: 233 RSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSK-DEYEKSRSRSRSRSPKENG 285
Score = 41 (19.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 36 (17.7 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
E+S RS SP++ NG G + KSRS
Sbjct: 270 EKSRSRSRSRSPKE----NGK---GDIKSKSRS 295
Score = 35 (17.4 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 203 (76.5 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 51/133 (38%), Positives = 70/133 (52%)
Query: 8 YGG---TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDAR 61
+GG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRDA+DA
Sbjct: 34 WGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 93
Query: 62 YSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGD 121
L+G+ + GSR+ VE + R R P + RC+ CG GH+A DC
Sbjct: 94 RGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYDCHRYS 152
Query: 122 WKNKCYRCGERGH 134
+ + R R H
Sbjct: 153 RRRRS-RSRSRSH 164
Score = 39 (18.8 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 235 RDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNYRSP-PE 273
R R ++ S R KSRSP P +RS PE
Sbjct: 224 RSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPE 264
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 191 (72.3 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 76 YDYDGYRLRVEF 87
Score = 51 (23.0 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPV 257
RS + RS S RR YS PR +SRSPV
Sbjct: 213 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRSPV 245
Score = 47 (21.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 224 RSPQDQRSPS---PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RSP RS S R R ++N S SPR SP P RSP
Sbjct: 197 RSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSRGSP---RYSPRHSRSRSP 244
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 190 (71.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 51/132 (38%), Positives = 64/132 (48%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + R DLE +F YG +R V + R+ FAFVEF RDA DA L+GR
Sbjct: 9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGRT 68
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYR 128
V G R VE + G G G G G+ G GD +KCY
Sbjct: 69 VCGRRARVELSTGKYARS-------GGGGGGGGGGGGGGGLGGRDRGGGGRGD--DKCYE 119
Query: 129 CGERGHIERNCQ 140
CG RGH R+C+
Sbjct: 120 CGGRGHFARHCR 131
Score = 52 (23.4 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 231 SPSPRDRRQANGSE--YSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
SP P RR + + GSPR +SRS + P R SPP G
Sbjct: 204 SPPPPKRRYEDEDDDRVRGSPRSRSRSR---SASPAVRR-GSPPRRRG 247
Score = 37 (18.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 238 RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
R NGS S ++ S D+ P R Y ++
Sbjct: 182 RDENGSASRYSDHERNGSGAVDSPPPPKRRYEDEDDD 218
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 202 (76.2 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ ++D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 46 (21.3 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGS---PRGKSRSPVDDADGPEDRNYRS 270
P+ R R R ++ EY S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSRSRSRSRSK-DEYEKSRSRSRSRSRSPKENGKGDIKSKSRS 297
Score = 41 (19.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 38 (18.4 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS SP + S P+ SRS
Sbjct: 296 RSRSQSRSDSPLPAPPSKARSVSPPPKRASRS 327
Score = 35 (17.4 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 206 (77.6 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 51 (23.0 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 222 DERSPQDQRSPSPRDRRQA---NGSEYSGSPRGKSRSPV-DDADGPEDRNY-RSPPEE 274
+ RS RS S R R++ + SG G S+ DDAD + R+ RS +E
Sbjct: 356 ESRSRSRSRSKSERSRKRGGKRDSKSGSGGGSGSSKKKKKDDADRSQSRSRSRSGSKE 413
Score = 49 (22.3 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP +S S R R Q G+E + +SRS
Sbjct: 289 RSPSRHKSKS-RSRSQERGAEEARGSASRSRS 319
Score = 49 (22.3 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 224 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS +++ RSPS +D+ ++ S + R KS+ P ++ DR +S
Sbjct: 241 RSKKEKSRSPS-KDKSRSR-SRSADKRRSKSKDPAEEKVQNSDRTGKS 286
Score = 44 (20.5 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 224 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 267
+S RS S R + ++ S S + KSRSP D R+
Sbjct: 217 KSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKDKSRSRSRS 261
Score = 42 (19.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 42 (19.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 224 RSPQDQRSPS--PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
RS +RS S P + + N S+ +G + KSRSP R+ EE
Sbjct: 260 RSADKRRSKSKDPAEEKVQN-SDRTG--KSKSRSPSRHKSKSRSRSQERGAEE 309
Score = 40 (19.1 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 39 (18.8 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEE 274
R + + S ++ SGS R KSRS + RSP ++
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKD 253
Score = 37 (18.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 223 ERSPQDQRSPSPRDRRQANG-----SEYSGSPRGKSRSPVDD 259
ER ++ R + R R + S G R +SRS D
Sbjct: 304 ERGAEEARGSASRSRSKEKSLRKSRSRSQGGSRSRSRSKSKD 345
Score = 37 (18.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
E+S + RS S R + S+ +G+ RS + R+ + G
Sbjct: 321 EKSLRKSRSRSQGGSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRG 374
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 202 (76.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ ++D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 43 (20.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
+S + RS S R R + + R +SRSP ++ G RS
Sbjct: 252 KSDRGSRSRS-RSRSKDEYEKSRSRSRSRSRSPKENGKGDVKSKSRS 297
Score = 41 (19.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS SP + S P+ SRS
Sbjct: 296 RSRSQSRSHSPLPAPPSKARSVSPPPKRASRS 327
Score = 35 (17.4 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 199 (75.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ +D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 46 (21.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGS---PRGKSRSPVDDADGPEDRNYRS 270
P+ R R R ++ EY S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSRSRSRSRSK-DEYEKSRSRSRSRSRSPKENGKGDIKSKSRS 297
Score = 41 (19.5 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 38 (18.4 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS SP + S P+ SRS
Sbjct: 296 RSRSQSRSDSPLPAPPSKARSVSPPPKRASRS 327
Score = 35 (17.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 193 (73.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 45 (20.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R+R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RNRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 201 (75.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R++VG L+SR R RD+E+ F YGRIR++ +K F FVEF D RDADDA Y LNG+++
Sbjct: 3 GCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL 62
Query: 70 -DGSRIIVEFA 79
D R+ +E A
Sbjct: 63 CDERRVTIEHA 73
Score = 36 (17.7 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++ S S R +SR+P
Sbjct: 186 RSRSRSRSRS-RSRSRSRSRSRSRS-RSRSRTP 216
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 43 (20.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDD 259
RS + RS S RR YS PR +SRS + +
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRSHISE 250
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 43 (20.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDD 259
RS + RS S RR YS PR +SRS + +
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRSHISE 250
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 193 (73.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 206 (77.6 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 46 (21.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSPPEE 274
E S RS S +R + GS+ + +D D + R+ RS +E
Sbjct: 359 EESRSRSRSRSKSERSRKRGSKRDSKSSSSKKKKKEDTDRSQSRSRSRSGSKE 411
Score = 42 (19.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 41 (19.5 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS +RS S +D+ + + + KSRSP
Sbjct: 254 RSADKRRSKS-KDQAEEKVQNSDNTGKSKSRSP 285
Score = 40 (19.1 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 40 (19.1 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS + RS RR + S R +SRS D
Sbjct: 314 RSKEKSRSQEKSLRRSRSRSRGGSRSRSRSRSKSKD 349
Score = 35 (17.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ S R +SRS
Sbjct: 338 RSRSRSRSKSKDKRKGRKRSREESRSRSRSRS 369
Score = 35 (17.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS + S S R +GS R +S+S
Sbjct: 207 RSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
Score = 35 (17.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 227 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
+D+R R R ++ S S +SR D + + E+
Sbjct: 348 KDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKSSSSKKKKKED 395
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 56/138 (40%), Positives = 74/138 (53%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 CKAGDWKNKCYRCGERGH 134
C + + R R H
Sbjct: 119 CHRYSRRRRS-RSRSRSH 135
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 56/138 (40%), Positives = 74/138 (53%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 CKAGDWKNKCYRCGERGH 134
C + + R R H
Sbjct: 119 CHRYSRRRRS-RSRSRSH 135
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 192 (72.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y+ +G
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 76 YDYDGYRLRVEF 87
Score = 44 (20.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS RS S R R ++N S SPR SP
Sbjct: 213 RSRSRSRSRS-RSRSRSNNRSRSYSPRRSRGSP 244
Score = 42 (19.8 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 255
RS + RS S RR +YS PR +SRS
Sbjct: 225 RSRSNNRSRSYSPRRSRGSPQYS--PRHSRSRS 255
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 206 (77.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 45 (20.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 275
R + + S ++ SGS R KSRS + RSP ++N
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDN 254
Score = 44 (20.5 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RS RS S R R Q+ S S + KSRSP D + R+ RSP
Sbjct: 223 RSGSHSRSKS-RSRSQSR----SRSKKEKSRSPSKD-NKSRSRS-RSP 263
Score = 43 (20.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 224 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS +++ RSPS +D + + S R KS+ +D
Sbjct: 241 RSKKEKSRSPS-KDNKSRSRSRSPDKSRSKSKDHAED 276
Score = 42 (19.8 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 40 (19.1 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 227 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA 260
+D+R R R ++ S S R + S D+
Sbjct: 348 KDKRKGRKRSREESRSRSRSKSERSRKHSSKRDS 381
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 206 (77.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 45 (20.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 275
R + + S ++ SGS R KSRS + RSP ++N
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDN 254
Score = 44 (20.5 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RS RS S R R Q+ S S + KSRSP D + R+ RSP
Sbjct: 223 RSGSHSRSKS-RSRSQSR----SRSKKEKSRSPSKD-NKSRSRS-RSP 263
Score = 43 (20.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 224 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS +++ RSPS +D + + S R KS+ +D
Sbjct: 241 RSKKEKSRSPS-KDNKSRSRSRSPDKSRSKSKDHAED 276
Score = 42 (19.8 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 40 (19.1 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 40 (19.1 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDR 266
++ RSPS ++ ++ RG +A PE R
Sbjct: 393 KKDTDHSRSPSRSVSKEREHAKAESGQRGSRAEGESEAPNPEPR 436
Score = 35 (17.4 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 227 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA 260
+D+R R R ++ S S R + S D+
Sbjct: 348 KDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDS 381
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 53/121 (43%), Positives = 69/121 (57%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + R R P + RC+ CG GH+A D
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCYECGEKGHYAYD 118
Query: 117 C 117
C
Sbjct: 119 C 119
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 206 (77.6 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 45 (20.9 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN-YRSPPEE 274
E S RS S +R + GS+ + +D D + R+ RS +E
Sbjct: 362 EESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKE 414
Score = 42 (19.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
++S SP + + S +G R KS+ ++
Sbjct: 245 EKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE 275
Score = 42 (19.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 42 (19.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEE 274
R + + S ++ SGS R KSRS + RSP +E
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKE 253
Score = 40 (19.1 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 36 (17.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPE 273
RS R+ + S G R +SRS D + R RS E
Sbjct: 321 RSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRK-RSREE 363
Score = 35 (17.4 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS S R+ S R +SRS
Sbjct: 341 RSRSRSRSKSKDKRKGRKRSREESRSRSRSRS 372
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 195 (73.7 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 45/97 (46%), Positives = 55/97 (56%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G+R+YVG L R RDLE F YGR RD+ +K + FVEF D RDADDA Y LNG+++
Sbjct: 3 GSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 62
Query: 70 DGSRIIVEFAXXXXXXXXXSR---EYLGRGPPPGSGR 103
G R++VE A R Y GR G GR
Sbjct: 63 LGERVVVEPARGTARGSNRDRYDDRYGGRRGG-GGGR 98
Score = 48 (22.0 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
R + +RS R + ++ G R KS+SPV R+ +S
Sbjct: 221 RRSRSRRSSHSRSKSRSRSKSRGG--RSKSKSPVKSRSRSRSRSNKS 265
Score = 46 (21.3 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
D+ +R DRR GS RG+SRS + R RS
Sbjct: 177 DDTELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRS 225
Score = 41 (19.5 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 261
RS RS RD ++ +S R +SRSP + D
Sbjct: 255 RSRSRSRSNKSRDVSKSKSKSHS---RTRSRSPKRERD 289
Score = 40 (19.1 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPED 265
RS S ++ ++ S SP+ + SP + + +D
Sbjct: 341 RSASAENKSRSRSRSRSASPKNGNASPDRNNESMDD 376
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 182 (69.1 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 43/110 (39%), Positives = 58/110 (52%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
T++YVG L + +LE S YG +R V + R+ FAFVEF DPRDA+D L+G+
Sbjct: 14 TKVYVGNLGTGAGKGELERALSYYGSLRTVWIARNPPGFAFVEFEDPRDAEDLVRGLDGK 73
Query: 68 DVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
+ GS + VE + R R P RC+ CG GH+A DC
Sbjct: 74 VICGSGVRVELSTVMPRRSRFDRPPAHRPFNPND-RCYECGEKGHYAYDC 122
Score = 50 (22.7 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 225 SPQDQRSPSPRDRRQANGSEY-SGSP--RGKSR 254
S RSPSP+ R GS + S SP RG+ R
Sbjct: 167 SRSKSRSPSPKRSRSPAGSPHRSTSPARRGRRR 199
Score = 43 (20.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 234 PRDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNYRSP-PEENG 276
PR R + S R KSRSP P +RS P G
Sbjct: 152 PRSRSKYRSISLPRSSRSKSRSPSPKRSRSPAGSPHRSTSPARRG 196
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 196 (74.1 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ ++D+K + FVEF D RDADDA Y LN +++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 42 (19.8 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
P+ R R ++ R +SRSP ++ G RS
Sbjct: 251 PKSDRGSHSHSRSRSKDKYGKSRSRSRSRSPKENGKGDIKSKSRS 295
Score = 41 (19.5 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS SP + S P+ SRS
Sbjct: 294 RSRSQSRSHSPLPAPPSKARSMSPPPKRASRS 325
Score = 35 (17.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 196 (74.1 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ ++D+K + FVEF D RDADDA Y LN +++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
Score = 42 (19.8 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
P+ R R ++ R +SRSP ++ G RS
Sbjct: 251 PKSDRGSHSHSRSRSKDKYGKSRSRSRSRSPKENGKGDIKSKSRS 295
Score = 41 (19.5 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS SP + S P+ SRS
Sbjct: 294 RSRSQSRSHSPLPAPPSKARSMSPPPKRASRS 325
Score = 35 (17.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRS 255
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 255
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 186 (70.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FV DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFV---DPRDADDAVYELDGKEL 59
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 60 CSERVTIEHA 69
Score = 44 (20.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 258
+S RSP P ++ Q GS S R KS S VD
Sbjct: 222 KSRSVSRSPMP-EKSQKRGS----SSRSKSPSSVD 251
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 185 (70.2 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 47/126 (37%), Positives = 65/126 (51%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRD 68
LY+GRL+ T ++L + FS+YG I D+K R +AFVE+ + RDADDA +LNG
Sbjct: 3 LYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTT 62
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYR 128
+ S+I VE+A G + +CF CG +GHW + C G K R
Sbjct: 63 LLNSKISVEWAKG--------------GKNADNNKCFACGQEGHWIKSCPNGGKKRSRDR 108
Query: 129 CGERGH 134
R H
Sbjct: 109 SLSRSH 114
Score = 47 (21.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 223 ERSPQDQRSPSPRDRRQANG--SEYSGSPRGKSRSPVDDADGPEDRNYR 269
+R + R S RDR ++NG S YS S R +SR D R+ +
Sbjct: 219 DRRRNNSRDRS-RDRSRSNGGGSRYS-SRRDRSRDRSRDRSRDRSRSLK 265
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 170 (64.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
RLY+G++ R RD+E YG+I ++ MK FAFV+F D RDA+DA + L+G+ ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 72 S--RIIVEFA 79
S R++VE A
Sbjct: 63 SSMRLVVEMA 72
Score = 57 (25.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
R+P +RS S RDR+++ S S R SRSPV ++ + SP +
Sbjct: 99 RTPPRRRSRS-RDRKRSRRSRSRSSSR--SRSPVRESRRRSESRSPSPKRD 146
Score = 56 (24.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 224 RSPQDQRSPSP-RDRRQANGSEYSGSPR-------GKSRSPVDDADGPEDRNYRSPPEEN 275
RS RS SP R+ R+ + S S SP+ +SRSP+ D R+ SPP+
Sbjct: 118 RSRSSSRSRSPVRESRRRSESR-SPSPKRDLKREASRSRSPLPAKDRSRTRS-GSPPKNG 175
Query: 276 G 276
G
Sbjct: 176 G 176
Score = 50 (22.7 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 235 RDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
R + + N S SPR +SRSP + P R RS
Sbjct: 73 RGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS 108
Score = 45 (20.9 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +RS +P RR++ + S R +SRS
Sbjct: 92 RSPR-RRSRTP-PRRRSRSRDRKRSRRSRSRS 121
Score = 44 (20.5 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYS--GSPRGKSRSPVDDADGPED 265
RS ++ R R + G +S GS R SRSP P+D
Sbjct: 167 RSGSPPKNGGDRKRSVSRGRSHSRDGSNRSVSRSP--SPGSPKD 208
Score = 43 (20.2 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 247 GSPRGK----SRSPVDDADGPEDRNYRSPP 272
G PRG SRSP + P R+ R+PP
Sbjct: 74 GKPRGNDRHGSRSPRRRSRSPRRRS-RTPP 102
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +RS SPR R + PR +SRS
Sbjct: 85 RSPR-RRSRSPRRRSRT-------PPRRRSRS 108
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 232 PSPRDRRQANGSEY-SGSPRGKSRSPVDDADGPEDR 266
P DR + S SPR +SR+P DR
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDR 111
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 170 (64.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
RLY+G++ R RD+E YG+I ++ MK FAFV+F D RDA+DA + L+G+ ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 72 S--RIIVEFA 79
S R++VE A
Sbjct: 63 SSMRLVVEMA 72
Score = 57 (25.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
R+P +RS S RDR+++ S S R SRSPV ++ + SP +
Sbjct: 99 RTPPRRRSRS-RDRKRSRRSRSRSSSR--SRSPVRESRRRSESRSPSPKRD 146
Score = 56 (24.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 224 RSPQDQRSPSP-RDRRQANGSEYSGSPR-------GKSRSPVDDADGPEDRNYRSPPEEN 275
RS RS SP R+ R+ + S S SP+ +SRSP+ D R+ SPP+
Sbjct: 118 RSRSSSRSRSPVRESRRRSESR-SPSPKRDLKREASRSRSPLPAKDRSRTRS-GSPPKNG 175
Query: 276 G 276
G
Sbjct: 176 G 176
Score = 50 (22.7 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 235 RDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
R + + N S SPR +SRSP + P R RS
Sbjct: 73 RGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS 108
Score = 45 (20.9 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +RS +P RR++ + S R +SRS
Sbjct: 92 RSPR-RRSRTP-PRRRSRSRDRKRSRRSRSRS 121
Score = 44 (20.5 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYS--GSPRGKSRSPVDDADGPED 265
RS ++ R R + G +S GS R SRSP P+D
Sbjct: 167 RSGSPPKNGGDRKRSVSRGRSHSRDGSNRSVSRSP--SPGSPKD 208
Score = 43 (20.2 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 247 GSPRGK----SRSPVDDADGPEDRNYRSPP 272
G PRG SRSP + P R+ R+PP
Sbjct: 74 GKPRGNDRHGSRSPRRRSRSPRRRS-RTPP 102
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +RS SPR R + PR +SRS
Sbjct: 85 RSPR-RRSRSPRRRSRT-------PPRRRSRS 108
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 232 PSPRDRRQANGSEY-SGSPRGKSRSPVDDADGPEDR 266
P DR + S SPR +SR+P DR
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDR 111
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 153 (58.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 41/111 (36%), Positives = 61/111 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
R+YVG L R +R++E+ F +G +R V + R FAF++F D RDA+DA L+G++
Sbjct: 3 RVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKN 62
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG-RCFNCGIDGHWARDCK 118
G R VE + GR GS +C+ CG GH+AR+C+
Sbjct: 63 --GWR--VELSTKAGSGR-------GRDRSGGSDMKCYECGEPGHFARECR 102
Score = 73 (30.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 224 RSPQDQRSPS----PRDRRQANGSEYSGSPR-GKSRSPVDDADGPEDRNY-RSPPE 273
RSP+ +RSPS PRDR S YS SP ++RS P +R+Y RSP +
Sbjct: 133 RSPRYRRSPSYGRSPRDRSPKRRS-YSRSPPPARARSYSRSPPPPRERSYSRSPAQ 187
Score = 71 (30.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 115 RDCKAGDWKNKCYRCGERGHIERNCQ 140
RD ++G KCY CGE GH R C+
Sbjct: 78 RD-RSGGSDMKCYECGEPGHFARECR 102
Score = 70 (29.7 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSPP 272
RS RSP R R ++ Y SP RSP D + P+ R+Y RSPP
Sbjct: 116 RSRSRSRSPRYRGRSRSRSPRYRRSP-SYGRSPRDRS--PKRRSYSRSPP 162
Score = 55 (24.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 224 RSPQDQ---RSPSPRDRRQANGSEYSGSPRGKS--RSPVDDADGP-EDRNY-RSPP 272
RSP+ + RS SPR RR + Y SPR +S R + P R+Y RSPP
Sbjct: 122 RSPRYRGRSRSRSPRYRRSPS---YGRSPRDRSPKRRSYSRSPPPARARSYSRSPP 174
Score = 51 (23.0 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 20/50 (40%), Positives = 23/50 (46%)
Query: 224 RSPQDQRSPSPRDRRQ----ANGSEYSGSP-----RGKSRSPVDDADGPE 264
RSP+D RSP R + A YS SP R SRSP A+ E
Sbjct: 145 RSPRD-RSPKRRSYSRSPPPARARSYSRSPPPPRERSYSRSPAQPANREE 193
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 171 (65.3 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 39/90 (43%), Positives = 52/90 (57%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RD--FAFVEFSDPRDADDARYSLNGR 67
+YVG L R R++E++FS+YG + +D+K R +AFVEF D RDADDA Y +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 68 DVDGSRIIVEFAXXXXXXXXXSR-EYLGRG 96
D DG + VE A +R Y GRG
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGRG 98
Score = 57 (25.1 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RSP + R++ S SPR +SRS
Sbjct: 226 RSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRS 257
Score = 52 (23.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 21/54 (38%), Positives = 23/54 (42%)
Query: 222 DERSPQDQRSPSP-RDR-RQANGSEYSGSPRGKSRSPVDDA--DGPEDRNYRSP 271
D RSP RS S R R R + S R KSRSP + P RSP
Sbjct: 198 DSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSP 251
Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSP-RGKSRSPV-DDADGPEDRNYRSPPEEN 275
S +D RSPS R R + SP R +SRS + P+ ++ R P ++
Sbjct: 195 SRRDSRSPS-RGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKS 246
Score = 47 (21.6 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRG 251
RSP S SPR R ++ S SPRG
Sbjct: 241 RSPAKSTSRSPRSRSRSKSR--SLSPRG 266
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CSERVTIEHA 72
>DICTYBASE|DDB_G0284245 [details] [associations]
symbol:DDB_G0284245 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0284245 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 EMBL:AAFI02000064 ProtClustDB:CLSZ2846728
RefSeq:XP_638672.1 ProteinModelPortal:Q54PX3 PRIDE:Q54PX3
EnsemblProtists:DDB0233309 GeneID:8624501 KEGG:ddi:DDB_G0284245
eggNOG:KOG0106 InParanoid:Q54PX3 OMA:DDAINSE Uniprot:Q54PX3
Length = 365
Score = 190 (71.9 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
+++Y+GRL R DL FS++G+I +++++ F F+E+ D ADDA S + ++
Sbjct: 2 SKIYIGRLNHDAREDDLYGRFSKFGKIDRLELRKGFCFIEYFDKASADDAINSEHKQNFL 61
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCY 127
G IIVE + S + + R P SG+CF C +GHWAR C G KN Y
Sbjct: 62 GRNIIVELSN--------SSKGIKR-PDSSSGKCFMCNEEGHWARSCPNGGKKNSRY 109
Score = 43 (20.2 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 267
+RS RS R R + S R +SR D D DR+
Sbjct: 145 DRSRSRSRSRDNRRRDDRDRSRDRSRDRDRSRDRSRDRDRSRDRD 189
Score = 42 (19.8 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 224 RSP-QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA-DGPEDRNYRSPPEEN 275
RSP ++ R RDR ++G+ +G+ R +SRS + + P + N + N
Sbjct: 268 RSPSKENRYRRERDR-SSSGTR-NGNGRDRSRSTSRNGLNKPNNNNNNNNNNNN 319
Score = 35 (17.4 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
P + + + + ++NG+ R ++ SP
Sbjct: 307 PNNNNNNNNNNNNKSNGNRSRSGSRNRNPSP 337
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 172 (65.6 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 45/114 (39%), Positives = 60/114 (52%)
Query: 7 RYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARY 62
+YGG ++ YVG L + +LE FS YG +R V + R+ FAFV F DPRDA+DA
Sbjct: 1 QYGGESKGYVGNLGTGVGKGELERAFSYYGPLRTVWIARNPPGFAFV-FEDPRDAEDAVG 59
Query: 63 SLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARD 116
L G+ + GSR+ VE + R P RC+ CG GH+A D
Sbjct: 60 GLGGKVICGSRVRVELSTGMPRRSRFDRPPACHPFDPND-RCYECGEQGHYAYD 112
Score = 49 (22.3 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 224 RSPQDQ-RSPSPRDRRQANGSEY-SGSP 249
RS Q + RSPSPR +GS + S SP
Sbjct: 181 RSCQSKSRSPSPRRSHSPSGSPHRSASP 208
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 164 (62.8 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 48/134 (35%), Positives = 67/134 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGR 67
+R+YVG L R R+LE+ F +G +R V + R +AF++F DPRDA DA +L+G+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 68 DVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCY 127
+ G R+ + RG G GR + G G R + G KCY
Sbjct: 62 N--GWRV---------------EQSHNRGERGGGGRGGDRG-GGGGGRGGRGGS-DLKCY 102
Query: 128 RCGERGHIERNCQN 141
CGE GH R C+N
Sbjct: 103 ECGETGHFARECRN 116
Score = 57 (25.1 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPV---DDADGP-EDRNY-RSPP 272
RS R+P PR RR + S SPR +S P + P R+Y RSPP
Sbjct: 124 RSKSRSRTP-PRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPP 176
Score = 54 (24.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSP---RGKSRSPVDDADGPEDR 266
P +RSPSP R G YS SP R + P + +G ++R
Sbjct: 155 PPRRRSPSPPPAR---GRSYSRSPPPYRAREEVPYANGNGLKER 195
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 149 (57.5 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 39/114 (34%), Positives = 59/114 (51%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGR 67
+R+YVG L R R+LE+ F +G IR V + R +AF++F D RDA DA ++G+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 68 DVDGSRIIVEFAXXXXXXXXXSREYL--GRGPPPGSGRCFNCGIDGHWARDCKA 119
+ G R+ R GRG +C+ CG GH+AR+C++
Sbjct: 62 N--GWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRS 113
Score = 72 (30.4 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 23/52 (44%), Positives = 26/52 (50%)
Query: 224 RSPQDQRSPSPRDRRQAN-GSEYSGSPRGKSRSPVDD-ADGPEDRNY-RSPP 272
RS RSP PR R+ G S SPR +S P + P RNY RSPP
Sbjct: 122 RSRSRSRSP-PRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPP 172
Score = 71 (30.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 94 GRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 141
G G G GR G DG R G KCY CGE GH R C++
Sbjct: 73 GGGGGRGGGRG---GGDGGRGR----GGSDLKCYECGESGHFARECRS 113
Score = 38 (18.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 235 RDRRQANGSEYSGSPRGKSRSPVDDADGPE---DRNY----RSPP 272
R+ R GS R +SRSP P R+Y RSPP
Sbjct: 109 RECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPP 153
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/68 (55%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 173 (66.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 41/121 (33%), Positives = 65/121 (53%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+YVGR++++T LE+ F ++G++ D+K +AFVEF + + A DA ++ VDG
Sbjct: 176 RVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDG 235
Query: 72 SRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG----DWKNKCY 127
+I+VE + + G+ P CF C GHWAR C G D +++ Y
Sbjct: 236 EKILVE------------KSHSGKKHPD---ECFICRGRGHWARSCPKGGRGRDGRDRDY 280
Query: 128 R 128
R
Sbjct: 281 R 281
Score = 59 (25.8 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDR 266
+RS RS SPR R G+ Y R +SR D G DR
Sbjct: 339 DRSYSRSRSRSPRYRSNG-GNRYRDRSRDRSRDRSGDRRGGSDR 381
Score = 37 (18.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 222 DERSPQDQRSPSPRDRRQANGS----EYSGSPR 250
D RS +D+ + R+R ++N E + SPR
Sbjct: 380 DRRSGRDRSTERRRERSKSNERRREREGNNSPR 412
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 151 (58.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGR 67
TR+YVG L R R+LE+ F +G +R+V + R +AF+EF D RDA DA +L+ +
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 68 DVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
+ G R+ + R RG S +C+ CG GH+AR+C+ G
Sbjct: 62 N--GWRVELSHKDKGGRGGGGGR----RGGIEDS-KCYECGELGHFARECRRG 107
Score = 67 (28.6 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 229 QRSPSPRDRRQAN-G-SEYSGSPRGKSRSPVDDADGP--EDRNY-RSPP 272
+RSPSPR RR + G + S SPRG+ P + P R+Y RSPP
Sbjct: 113 RRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPP 161
Score = 59 (25.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 225 SPQDQRSPSPRDRRQA---NGSEYSGSP--RGKSRSPVDDADGPEDRNYRSP 271
SP+ +RSP PR R G YS SP RG R D P R RSP
Sbjct: 134 SPRGRRSP-PRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRDSPYGR--RSP 182
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R++VG L+SR R RD+E+ F YGRIR++ +K F FVEF D RDADDA Y LNG+++
Sbjct: 3 GCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL 62
Query: 70 DGSRIIVEFA 79
R+ +E A
Sbjct: 63 CDERVTIEHA 72
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ ++D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFA 79
R+IVE A
Sbjct: 63 ERVIVEHA 70
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 164 (62.8 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 39/97 (40%), Positives = 55/97 (56%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RD--FAFVEFSDPRDADDARYSLNGR 67
+YVG L R R++E++FS+YG + +D+K R +AFVEF D RDA+DA + +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 68 DVDGSRIIVEFAXXXXXXXXXSR-EYLGRGPPPGSGR 103
D DG R+ VE A +R + G G G GR
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGR 105
Score = 58 (25.5 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 224 RSPQDQRSPSPRDRRQ--ANGSEYSGSPRGKSRSP 256
RS RSP + R+ A + S PR KSRSP
Sbjct: 228 RSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP 262
Score = 53 (23.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 224 RSP---QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RSP RSPSPR R + S + S+SP + + RSP
Sbjct: 251 RSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIHTRSP 301
Score = 53 (23.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGS---PRGKSRSPVDDAD--GPEDRNYRSP 271
D RSP RS S + R ++ G S S R +SRSP + P RSP
Sbjct: 200 DSRSPSRGRSYS-KSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSP 253
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 166 (63.5 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 38/78 (48%), Positives = 50/78 (64%)
Query: 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RD--FAFVEFSDPRDADDAR 61
R+ T +YVG L R ++E++F +YG I D+D+K R +AFVEF DPRDADDA
Sbjct: 4 RWNRT-IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAI 62
Query: 62 YSLNGRDVDGSRIIVEFA 79
Y +G D DG R+ VE A
Sbjct: 63 YGRDGYDFDGCRLRVEIA 80
Score = 49 (22.3 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
RSP D S S R R ++ G S S + +S SP
Sbjct: 192 RSPDD--SKSYRSRSRSRGPSCSYSSKSRSVSP 222
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 163 (62.4 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNGR 67
++YVG L R +++E+IF +YGRI+ VD+K FAFVEF D RDA+DA + +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 68 DVDGSRIIVEF 78
+ DG RI VEF
Sbjct: 70 EFDGRRIRVEF 80
Score = 50 (22.7 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 224 RSPQDQR--SP--SPRDRRQANGSEYSGSPRGKSRSP 256
RSP+ +R SP SPR R + S R SRSP
Sbjct: 215 RSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSP 251
Score = 42 (19.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS SPR R+A+ +YS R +SRS
Sbjct: 213 RSRSPRAERRAS-PKYSPR-RSRSRS 236
Score = 41 (19.5 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 236 DRRQANGSEYSGSPRGKSRSP 256
D GS G R +SRSP
Sbjct: 197 DNSSGGGSGGGGRDRSRSRSP 217
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 163 (62.4 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNGR 67
++YVG L R +++E+IF +YGRI+ VD+K FAFVEF D RDA+DA + +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 68 DVDGSRIIVEF 78
+ DG RI VEF
Sbjct: 70 EFDGRRIRVEF 80
Score = 50 (22.7 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 224 RSPQDQR--SP--SPRDRRQANGSEYSGSPRGKSRSP 256
RSP+ +R SP SPR R + S R SRSP
Sbjct: 215 RSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSP 251
Score = 42 (19.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS SPR R+A+ +YS R +SRS
Sbjct: 213 RSRSPRAERRAS-PKYSPR-RSRSRS 236
Score = 41 (19.5 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 236 DRRQANGSEYSGSPRGKSRSP 256
D GS G R +SRSP
Sbjct: 197 DNSSGGGSGGGGRDRSRSRSP 217
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 178 (67.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+++VG L +TR+ ++ E+F +YG + + D+ R++ FV D DA LNGR VD
Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVD 145
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G + V+ + R G G P +C+ CG GHW+++C
Sbjct: 146 GQPLKVQVSTSRV------RPKPGMGDPE---QCYRCGRSGHWSKEC 183
Score = 105 (42.0 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 10 GT-RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRD 68
GT +L++G L +T++ +L +F +YG + + D+ +++ FV + DA +LNG
Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64
Query: 69 VDGSRIIVEFA 79
++ I VE A
Sbjct: 65 LNEFAIKVEAA 75
Score = 60 (26.2 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD +CYRCG GH + C
Sbjct: 165 GD-PEQCYRCGRSGHWSKEC 183
Score = 41 (19.5 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 222 DER--SPQDQRSPSPRDRRQA 240
DER S + R PSP RR A
Sbjct: 330 DERMISSRGMRGPSPPGRRYA 350
Score = 40 (19.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 229 QRSPSPRDRRQANGSEYSGSP 249
+RSP P R +NG GSP
Sbjct: 298 RRSPPPP--RSSNGMSRYGSP 316
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 42/94 (44%), Positives = 54/94 (57%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 100
D DG R+ VEF G G P G
Sbjct: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 161 (61.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-----FAFVEFSDPRDADDARYSLNG 66
R+YVG L + RD+E++F +YG+IRD+++K + FAFV F DPRDA+DA + NG
Sbjct: 5 RIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG 64
Query: 67 RDVDGSRIIVEF 78
++ VE+
Sbjct: 65 YGFGDCKLRVEY 76
Score = 44 (20.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 250 RGKSRSPVDDADGPEDRNYRSPP 272
RG+ P P R YRSPP
Sbjct: 199 RGRYTPPYQSRGSPPPR-YRSPP 220
Score = 35 (17.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSP 256
RS + A G G PRG+ P
Sbjct: 78 RSSGSKFSGPAGGGGGGGGPRGRFGPP 104
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 158 (60.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 158 (60.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 158 (60.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 158 (60.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 158 (60.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 158 (60.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 47/119 (39%), Positives = 61/119 (51%)
Query: 1 MPRYDDRYGGT---RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFS 52
M + D GG R+YVG L + R +DLE++F +YGRIR++++K FAFV F
Sbjct: 1 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 60
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDG 111
DPRDA+DA Y NG D R+ VEF R GR PP F + G
Sbjct: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGGWPRG--GRNGPPTRRSDFRVLVSG 117
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 48/111 (43%), Positives = 61/111 (54%)
Query: 1 MPRYDDRYGGT---RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFS 52
M + D GG R+YVG L + R +DLE++F +YGRIR++++K FAFV F
Sbjct: 1 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 60
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
DPRDA+DA Y NG D R+ VEF R Y GRG P GR
Sbjct: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFP----------RTYGGRGGWPRGGR 101
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 48/111 (43%), Positives = 61/111 (54%)
Query: 1 MPRYDDRYGGT---RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFS 52
M + D GG R+YVG L + R +DLE++F +YGRIR++++K FAFV F
Sbjct: 1 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 60
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
DPRDA+DA Y NG D R+ VEF R Y GRG P GR
Sbjct: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFP----------RTYGGRGGWPRGGR 101
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 149 (57.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRD 68
++YVG L S S++LEEIF R+GRIR V + R FAFVE+ D RDA+DA +L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 69 VDGSRIIVEFA 79
+ G R VE +
Sbjct: 64 ICGVRARVELS 74
Score = 52 (23.4 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
ER+ RSP RDR + S S R +SRS
Sbjct: 144 ERTRSRSRSPQERDRSHSKSRSRSRS-RSRSRS 175
Score = 47 (21.6 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
ER RS SP++R +++ S S R +SRS
Sbjct: 142 ERERTRSRSRSPQERDRSHSKSRSRS-RSRSRS 173
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 149 (57.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRD 68
++YVG L S S++LEEIF R+GRIR V + R FAFVE+ D RDA+DA +L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 69 VDGSRIIVEFA 79
+ G R VE +
Sbjct: 64 ICGVRARVELS 74
Score = 52 (23.4 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
ER+ RSP RDR + S S R +SRS
Sbjct: 144 ERTRSRSRSPQERDRSHSKSRSRSRS-RSRSRS 175
Score = 47 (21.6 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
ER RS SP++R +++ S S R +SRS
Sbjct: 142 ERERTRSRSRSPQERDRSHSKSRSRS-RSRSRS 173
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 48/111 (43%), Positives = 60/111 (54%)
Query: 1 MPRYDDRYGGT---RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFS 52
M + D GG R+YVG L S R +DLE++F +YGRI ++++K FAFV F
Sbjct: 1 MSGWADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFE 60
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
DPRDA+DA Y NG D R+ VEF R Y GRG P GR
Sbjct: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFP----------RTYGGRGGWPRGGR 101
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 38/75 (50%), Positives = 49/75 (65%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYS 63
G R+YVG L S R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y
Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 72
Query: 64 LNGRDVDGSRIIVEF 78
NG D R+ VEF
Sbjct: 73 RNGYDYGQCRLRVEF 87
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 151 (58.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 40/95 (42%), Positives = 51/95 (53%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+G
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGGT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 47/111 (42%), Positives = 61/111 (54%)
Query: 1 MPRYDDRYGGT---RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFS 52
M + D GG R+YVG L + R +DLE++F +YGRIR++++K FAFV F
Sbjct: 1 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 60
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
DPRDA+DA Y NG D R+ VEF R Y GRG P + R
Sbjct: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFP----------RAYGGRGGWPRASR 101
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 158 (60.7 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 38 (18.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 224 RSPQD---QRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
R P+D +RSP PR R R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPRRRYLERACLEPSDFRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 150 (57.9 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 7 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 64
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 65 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 100
Score = 53 (23.7 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 210 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 246
Score = 45 (20.9 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 226 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 278
Score = 44 (20.5 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 122 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 167
Score = 40 (19.1 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 153 RGPPPRSG 160
Score = 36 (17.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 100 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 136
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 150 (57.9 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 40 (19.1 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 36 (17.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 134
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 150 (57.9 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 207 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 243
Score = 45 (20.9 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 223 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 275
Score = 44 (20.5 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 119 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 164
Score = 40 (19.1 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 150 RGPPPRSG 157
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 152 (58.6 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 38/95 (40%), Positives = 50/95 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 10 KVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRT 69
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + + RGPPP R
Sbjct: 70 LCGCRVRVELSNG-------EKRTRSRGPPPSWNR 97
Score = 40 (19.1 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 224 RSPQDQRSPSPRD--RRQANGSEYSGSPRGKSRS 255
R P + PRD RR+++ + SPR +S S
Sbjct: 89 RGPPPSWNRRPRDDYRRRSSPPQRRRSPRRRSFS 122
Score = 36 (17.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 230 RSPSPR-DRRQANGSEYSGSPRGKSRSP 256
R P P +RR + SP + RSP
Sbjct: 89 RGPPPSWNRRPRDDYRRRSSPPQRRRSP 116
Score = 36 (17.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
PQ +RSP R ++ +S R + RS
Sbjct: 110 PQRRRSPRRRSFSRSRSRSFSRERR-RERS 138
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 163 (62.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 45/124 (36%), Positives = 58/124 (46%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARY 62
+R++VG L+ R LE F RYG+I RD R F F+ F+D R ADDA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 63 SLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRG-PPPGSG---RCFNCGIDGHWARDCK 118
++GR++ I V A + G G G G CF C GHWARDC
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCP 131
Query: 119 A-GD 121
+ GD
Sbjct: 132 STGD 135
Score = 35 (17.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 254 RSPVDDADGPEDR 266
RS + D DG DR
Sbjct: 147 RSRIGDIDGHRDR 159
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 149 (57.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 40/95 (42%), Positives = 51/95 (53%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 15 KVYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRT 74
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP R
Sbjct: 75 LCGCRVRVEMSNGEKR----SRF---RGPPPSWSR 102
Score = 42 (19.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 222 DERSPQD-QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 269
D R D +R SP R ++ +S S R SR + DRNY+
Sbjct: 107 DYRRGDDYRRRSSPPARHRSPRRSFSRSRSRSLSRERRRERSLSRDRNYK 156
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 150 (57.9 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 205 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 241
Score = 48 (22.0 bits), Expect = 9.5e-13, Sum P(3) = 9.5e-13
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S S SR D DG DR+Y P
Sbjct: 221 DYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRG-YGDRDGYGRDRDYSDHP 273
Score = 43 (20.2 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 357 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 386
Score = 42 (19.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 117 RGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 162
Score = 41 (19.5 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 295 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 350
Score = 40 (19.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 148 RGPPPRSG 155
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 150 (57.9 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGR+ R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA LNG+ +DG I VE A SR RGPPP
Sbjct: 63 KDAARELNGKALDGKPIKVEQATKPSFSAP-SR----RGPPP 99
Score = 50 (22.7 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 226 PQDQRSPSPRDRRQANGSE-YSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
P+ PS RD + + YSG R S D + R+Y PP +
Sbjct: 169 PRRDPIPSRRDVYMSPRDDGYSGKDRYDGYSGRDYGSSRDSRDYGPPPRD 218
Score = 49 (22.3 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SP+D S +DR YSG G SR D P D YR
Sbjct: 183 SPRDD-GYSGKDRYDG----YSGRDYGSSRDSRDYGPPPRDYAYR 222
Score = 49 (22.3 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 232 PSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
P PR R R GS GS RG+ P+ GP R+ PP+ +
Sbjct: 99 PPPRSRGPPRGLRGSRGGGSSRGQM--PLKR--GPPPRSGGPPPKRS 141
Score = 42 (19.8 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 93 LGRGPPPGSG 102
L RGPPP SG
Sbjct: 125 LKRGPPPRSG 134
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 150 (57.9 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 207 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 243
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 223 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 275
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 119 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 164
Score = 43 (20.2 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 359 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 388
Score = 41 (19.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 297 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 352
Score = 40 (19.1 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 150 RGPPPRSG 157
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 150 (57.9 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 42 (19.8 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQDRGLPPSM 353
Score = 40 (19.1 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 36 (17.7 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 134
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 150 (57.9 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
Score = 40 (19.1 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 36 (17.7 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 134
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 150 (57.9 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
Score = 40 (19.1 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 36 (17.7 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 134
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 150 (57.9 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 43 (20.2 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
Score = 40 (19.1 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 39 (18.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSHGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 37 (18.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSHGGHMDDGGY 134
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 150 (57.9 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 41/102 (40%), Positives = 53/102 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 6 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 63
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
DA +NG+ +DG I VE A S E RGPPP
Sbjct: 64 KDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 99
Score = 53 (23.7 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 209 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 245
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 225 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 277
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 121 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 166
Score = 43 (20.2 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 361 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 390
Score = 41 (19.5 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 299 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 354
Score = 40 (19.1 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 152 RGPPPRSG 159
Score = 36 (17.7 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 99 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 135
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 142 (55.0 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFA 79
DA +NG+ +DG I VE A
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQA 84
Score = 43 (20.2 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPED 265
SPRD + YS SR D A P D
Sbjct: 95 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 127
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 139 (54.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 39/104 (37%), Positives = 51/104 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 101
+DA +++G +DG + V+ A + RGPPP S
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPPRS 109
Score = 41 (19.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR R ++ S S SRS
Sbjct: 98 SHHSRRGPPPRSRSRSRSRSRSRSRSRYSRS 128
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 146 (56.5 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 40/107 (37%), Positives = 52/107 (48%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGR+ R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSR----EYLGRGPPPG 100
DA LNG+ +DG I VE A R RGPP G
Sbjct: 63 KDAARELNGKALDGKPIKVEQATKPSFSTPSRRGPPTSPRSRGPPRG 109
Score = 52 (23.4 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SP+D S +DR YSG G SR D P D +YR
Sbjct: 183 SPRDD-GYSGKDRYDG----YSGRDYGSSRDSRDYGPPPRDYSYR 222
Score = 51 (23.0 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 226 PQDQRSPSPRDRRQANGSE-YSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
P+ PS RD + + YSG R S D + R+Y PP +
Sbjct: 169 PRRDPMPSRRDVYMSPRDDGYSGKDRYDGYSGRDYGSSRDSRDYGPPPRD 218
Score = 42 (19.8 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 93 LGRGPPPGSG 102
L RGPPP SG
Sbjct: 125 LKRGPPPRSG 134
Score = 42 (19.8 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 339 PRDSYSSSSRGGPRGGGRGGSRSDRGGGRS 368
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L + R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y NG
Sbjct: 3 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 62
Query: 67 RDVDGS 72
GS
Sbjct: 63 LPPSGS 68
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 146 (56.5 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 40/102 (39%), Positives = 52/102 (50%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
D +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDVARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 205 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 241
Score = 47 (21.6 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 19/54 (35%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S S SR D DG DR Y P
Sbjct: 221 DYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRG-YGDRDGYGRDREYSDHP 273
Score = 43 (20.2 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 357 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 386
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 117 RGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 162
Score = 40 (19.1 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 148 RGPPPRSG 155
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 152 (58.6 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 45/121 (37%), Positives = 57/121 (47%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP---GSGRCFNCGIDGHWA 114
DA +NG+ +DG I VE A R G PPP G R G G A
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGGRR---GPPPPPRSRGPPRGLRGGRGGSGA 119
Query: 115 R 115
R
Sbjct: 120 R 120
Score = 54 (24.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 240 ANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
A G GS G SR P+ GP R+ PP+ +
Sbjct: 119 ARGPPSRGSHLGSSRGPLPMKRGPPPRSGGPPPKRS 154
Score = 50 (22.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 17/49 (34%), Positives = 18/49 (36%)
Query: 224 RSPQDQRSP---SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
R P R SPRD + YS SR D A P D YR
Sbjct: 184 REPMPSRRDVYMSPRDDGYSTKDGYSSRDYPSSRDTRDYAPPPRDYAYR 232
Score = 43 (20.2 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 354 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 383
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 137 (53.3 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 39 (18.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR + G Y R +SRS
Sbjct: 98 SHHSRRGPPPR---RYGGGGYGRRSRSRSRS 125
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 163 (62.4 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR----DFAFVEFSDPRDADDARYSLNGR 67
R+YVG L R++D++++F ++G++ VD+K FAFVEF D RDADDA + +G
Sbjct: 8 RIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGY 67
Query: 68 DVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 68 DYDGYRLRVEF 78
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 145 (56.1 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 40/104 (38%), Positives = 52/104 (50%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 101
DA +NG+ +DG I VE A R G PPP S
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFES--GRR--GLPPPPRS 102
Score = 53 (23.7 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 44 (20.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFTLSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 40 (19.1 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 40 (19.1 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYTSS-RSDLYSSG-RDRVGRQERGLPPSM 353
Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRG-KSR 254
P+D S S R + G S S RG +SR
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGRSR 389
Score = 36 (17.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 134
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 146 (56.5 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 40/102 (39%), Positives = 52/102 (50%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
D +NG+ +DG I VE A S E RGPPP
Sbjct: 63 KDVARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 51 (23.0 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 205 SPRDDGYSTKDSYSSRDYLSSRDTRDYAPPPRDYTYR 241
Score = 47 (21.6 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 19/54 (35%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S S SR D DG DR Y P
Sbjct: 221 DYLSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRG-YGDRDGYGRDREYSDHP 273
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 117 RGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 162
Score = 40 (19.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 148 RGPPPRSG 155
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 145 (56.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 40/104 (38%), Positives = 52/104 (50%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 101
DA +NG+ +DG I VE A R G PPP S
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFES--GRR--GLPPPPRS 102
Score = 53 (23.7 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSREYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFTMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 43 (20.2 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 225 SPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 227 SSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 41 (19.5 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 95 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 146
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
Score = 40 (19.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 95 RGPPPGSG 102
RGPPP SG
Sbjct: 151 RGPPPRSG 158
Score = 36 (17.7 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 268
P PR R G G +R P +D Y
Sbjct: 98 PPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGY 134
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 137 (53.3 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L+VG L T LE++FS+YG++ +V + +D F FV F +P DA DA +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ VDG +I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 36 (17.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 237 RRQANGSE--YSGSPRGKSRSPVDDADGPEDRNYRS 270
R + G + Y GS R ++RS + G D RS
Sbjct: 108 RGRGGGGDRGYGGSSRFENRSGGYQSSGSRDYYGRS 143
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 44/105 (41%), Positives = 58/105 (55%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDA 57
MPRY + ++YVG L S ++E FS+YG +R+V + R+ FAFVEF D RDA
Sbjct: 1 MPRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDA 60
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+DA L+G G+RI VE + SRE GRG G G
Sbjct: 61 EDATRGLDGTRCCGTRIRVEMSSGR------SRE--GRGGGGGGG 97
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRD 68
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ G R+ VE + SR RGPPP GR
Sbjct: 71 LCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 142 (55.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/106 (37%), Positives = 52/106 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+DA +++G +DG + V+ A + RGPPP S R
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPPRSPR 111
Score = 47 (21.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 108 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 139
Score = 45 (20.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 172 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 204
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 138 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 181
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 150 (57.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 44/117 (37%), Positives = 56/117 (47%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP---GSGRCFNCGIDG 111
DA +NG+ +DG I VE A R G PPP G R F G G
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSF----ERGRHGPPPPPRSRGPPRGFGAGRGG 115
Score = 53 (23.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 222 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 272
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YGDRDGYGRDRDYSDHP 276
Score = 36 (17.7 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
R P R +G SR P+ GP R+ P+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRS 165
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 40/106 (37%), Positives = 56/106 (52%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDA 57
MPRY + ++YVG L S ++E F++YG +R+V + R+ FAFVEF D RDA
Sbjct: 1 MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDA 60
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+DA +L+G G+RI VE + G GSGR
Sbjct: 61 EDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEG--GSSGRSGSGR 104
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDA 60
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 70
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 137 (53.3 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 53 (23.7 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++N S SP +SP ++
Sbjct: 184 RSRSRSRSPPPTSKRESNSRSRSKSP---PKSPEEE 216
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 42 (19.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR + S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGSSGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 146 (56.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RD--FAFVEFSDPRDADDARYSLNGR 67
+YVG L R ++E+IF +YGRI D+++K R + FVEF RDA+DA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 68 DVDGSRIIVEFAXXXXXXXXXSRE--YLGRGPPPGSG 102
++DG R+ VE A R Y G G G G
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGG 105
Score = 47 (21.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSP---RGKSRSP 256
RS RSPSP D++++ S S R +SRSP
Sbjct: 254 RSISKSRSPSP-DKKKSPPRAMSRSKSRSRSRSRSP 288
Score = 43 (20.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS-PVDDADGPEDRNYRSP 271
E S RSPS R + S G R SRS + + P +SP
Sbjct: 199 ESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSP 248
Score = 41 (19.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADG 262
SP ++SP PR ++ S S R S+SP +G
Sbjct: 263 SPDKKKSP-PRAMSRSKSRSRSRS-RSPSKSPPKVREG 298
Score = 41 (19.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS SPR + S SPR + + P +SPP
Sbjct: 230 RSRSLSRSKSPR-------KDLSKSPRRSLSRSISKSRSPSPDKKKSPP 271
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 127 (49.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 37/102 (36%), Positives = 53/102 (51%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE +FS+YG+I++V + +D F FV F + DA DA
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 105
+NG+ VDG +I V+ A Y RG G GR F
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGG--Y--RGGSSGGGRGF 104
Score = 35 (17.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 235 RDRRQANGSEYSGSPRGKSRS 255
R R G Y GS R +RS
Sbjct: 106 RGGRGRGGGGYGGSSRFDNRS 126
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 135 (52.6 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV--D 70
++VG TR DLE +F +YGR+ VDMK +AFV F D RDA+DA L+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 71 GSRIIVEFA 79
R+ VE+A
Sbjct: 64 KRRLSVEWA 72
Score = 94 (38.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 21 RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79
RT+ D+E+ F YG++ +V ++R+F+FV+F DA A + + + VE+A
Sbjct: 104 RTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Score = 54 (24.1 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDD---ADGPEDRNYRSP 271
RSP+ RS SP RR+ + +Y P G+ R P D A PE Y+ P
Sbjct: 176 RSPR--RSLSPVYRRRPS-PDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGP 224
Score = 43 (20.2 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 224 RSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSP 256
RSP+ R P+ +RR++ S G+ RSP
Sbjct: 214 RSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQRSP 248
Score = 41 (19.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 89 SREYLGRGPPPGSGR 103
S +Y GR P PG GR
Sbjct: 191 SPDY-GRRPSPGQGR 204
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 143 (55.4 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 41/114 (35%), Positives = 57/114 (50%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE FS++GRI R+ + R FAFV + +P DA
Sbjct: 5 DRPG--KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDG 111
DA +NG+ +DG I VE A R GPPP R + G+ G
Sbjct: 63 KDAAREMNGKPLDGKPIKVEQATKPQFETSGRR-----GPPPPRSRGPSRGLRG 111
Score = 54 (24.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 232 PSPRDRRQANGSEYS-GSPRGK----SRSPVD---DADGPEDRNYRSPPEENG 276
P PR R + G S G P G SR P + GP R PPE NG
Sbjct: 98 PPPRSRGPSRGLRGSRGGPSGMRGPPSREPFFKGMSSRGPPPMK-RGPPERNG 149
Score = 48 (22.0 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSR 254
+R + +R P P +R EYS S RG R
Sbjct: 332 DRPGRQERGPPPLERGYPR--EYSSSSRGAPR 361
Score = 41 (19.5 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 232 PSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
P RD + YS SR D P D YR
Sbjct: 189 PPHRDDHYGSKDSYSSRDYMSSRDSRDYGPPPRDYPYR 226
Score = 40 (19.1 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNY 268
S +R P R GS+ S S R S D D GP R+Y
Sbjct: 180 SLMSRRDDGPPHRDDHYGSKDSYSSRDYMSSR-DSRDYGPPPRDY 223
Score = 39 (18.8 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 233 SPRDRRQANGSEYSGSPR-GKSRSPVDDADGPEDRNYRSPPEENG 276
S RD + YS G R P D P +YR P + G
Sbjct: 233 SSRDDYGSGSRGYSDRDGYGGGREPRGYIDRPSAGSYRDPYDGYG 277
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 140 (54.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 39/131 (29%), Positives = 58/131 (44%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
TRL+VGR+ + D+ + F YG+I D + F FVE D RDA D G++
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCG 130
GSRI+VE A RE P F ++ + + D D K+ + G
Sbjct: 64 GSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVE-NLSEDVSWQDLKDVMRKAG 122
Query: 131 ERGHIERNCQN 141
E + + +N
Sbjct: 123 EPTFTDAHREN 133
Score = 57 (25.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 222 DE-RSPQDQRSPSPRDRRQAN------GSE-YSGSPRG--KSRSPVDDADGPEDRNYRSP 271
DE R RSPSPR R+ N GS+ YS +P +S +P + D P + P
Sbjct: 286 DEYRRDAYSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPTESYDKPAASEEQQP 345
Score = 51 (23.0 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
S D R P + R+ G EY R + R DD D YR
Sbjct: 246 SRSDYRRPHDDEYRRPRGDEYRPG-RDEYRRSRDDGRPSHDDEYR 289
Score = 50 (22.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 222 DER--SPQDQRSPSPRDRRQANG-SEYSGSPRGKSRSPVDDA-DGPEDRNYRSPPEE 274
DER +P+ + + RD + G EY + R R P DD P YR +E
Sbjct: 216 DERRYAPRGEYRRNNRDEYRRGGRDEYRRNSRSDYRRPHDDEYRRPRGDEYRPGRDE 272
Score = 46 (21.3 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 18/51 (35%), Positives = 20/51 (39%)
Query: 222 DERSPQDQRSPSPR-DRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
D R P D PR D + EY S R R P D + D RSP
Sbjct: 249 DYRRPHDDEYRRPRGDEYRPGRDEYRRS-RDDGR-PSHDDEYRRDAYSRSP 297
Score = 44 (20.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 222 DERSP-QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 267
DE P +D+ S D R ++ EY SRSP D E+R+
Sbjct: 264 DEYRPGRDEYRRSRDDGRPSHDDEYRRD--AYSRSPSPRRDREENRS 308
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 137 (53.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPASKRESKSRSRSKSP---PKSPEEE 216
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 137 (53.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 137 (53.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 137 (53.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 137 (53.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 137 (53.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR S SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRS 128
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 137 (53.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A + RGPPP
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 47 (21.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+R+ SPR RR++ S S R +SRS
Sbjct: 117 RRTRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 259
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
Score = 37 (18.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 150 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 193
Score = 36 (17.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S +R P PR + SPR + RS
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRTRSPRRRRRS 128
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 137 (53.3 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDA 60
+YVG TR DLE +FS++GR++ VDMK +AFV F D RDA+DA
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDA 51
Score = 112 (44.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 21 RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79
RTR RD+E F YG++ +V M+R+FAFV+F+ DA A S + + + VE+A
Sbjct: 106 RTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164
Score = 51 (23.0 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 224 RSPQDQR--SPSPRDRRQAN--GSEYSGSPRGKSRSP-VDDADGPEDR 266
RSP+ R P+P +RR++ G S R ++RSP D + P R
Sbjct: 200 RSPEYDRYKGPAPYERRKSPDYGRRSSDYGRARARSPGYDRSRSPIQR 247
Score = 45 (20.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 238 RQANGSE--YSGSPRGKSRSPVDDADGPEDRNYRSPPE 273
R+A E Y+GS R +S SPV D R PE
Sbjct: 166 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPE 203
Score = 44 (20.5 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRSP-VDDADGPEDRNYRSPPE 273
+RSPSP RR+ + +Y+ + RSP D GP R P+
Sbjct: 181 RRSPSPVYRRRPS-PDYT-----RRRSPEYDRYKGPAPYERRKSPD 220
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 152 (58.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 47/140 (33%), Positives = 63/140 (45%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-----FAFVEFSDPRDADDARYSLN 65
+R+YVG L S SRD+E F +YG I D+K+ FAF+EF D RDA DA +
Sbjct: 8 SRIYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKD 67
Query: 66 GRDVDGSRIIVEFAXXXXXXXXXS-----REYLGRGPPPGSGRCF----NCGIDGHWARD 116
G D +G+++ VE + R + RGP GR I G W
Sbjct: 68 GCDFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPKSRRGRYVVEVTGLPISGSWQ-- 125
Query: 117 CKAGDWKNKCYRCGERGHIE 136
D K+ GE GH +
Sbjct: 126 ----DLKDHLREAGECGHAD 141
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 152 (58.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 47/140 (33%), Positives = 63/140 (45%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-----FAFVEFSDPRDADDARYSLN 65
+R+YVG L S SRD+E F +YG I D+K+ FAF+EF D RDA DA +
Sbjct: 8 SRIYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKD 67
Query: 66 GRDVDGSRIIVEFAXXXXXXXXXS-----REYLGRGPPPGSGRCF----NCGIDGHWARD 116
G D +G+++ VE + R + RGP GR I G W
Sbjct: 68 GCDFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPKSRRGRYVVEVTGLPISGSWQ-- 125
Query: 117 CKAGDWKNKCYRCGERGHIE 136
D K+ GE GH +
Sbjct: 126 ----DLKDHLREAGECGHAD 141
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 142 (55.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 39/87 (44%), Positives = 49/87 (56%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TR DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYT-RPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA Y+LN + V G +I ++FA
Sbjct: 60 DVRDAEDALYNLNRKWVCGRQIEIQFA 86
Score = 38 (18.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S + RS S + R ++ G S SP+ ++ S
Sbjct: 176 SRERSRSKSLQKRSKSIGKSQSSSPQKQTSS 206
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 145 (56.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
Score = 40 (19.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 246 SGSPRGKSRSPVDDADGP 263
S S G+ RSP+ A GP
Sbjct: 298 SSSYYGRDRSPLRRATGP 315
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSSGGRG 102
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 143 (55.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 38/129 (29%), Positives = 59/129 (45%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRD 68
G T+L+V ++S +++L F YG + + D+ +D+AFV DA +A L
Sbjct: 76 GSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTT 135
Query: 69 VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYR 128
G I V+ + R G G G C+ CG GHW++DC+ +N Y
Sbjct: 136 FQGKLIKVQLSTSRL------RTAPGMGDQTG---CYICGEQGHWSKDCRHS--QNGSYG 184
Query: 129 CGERGHIER 137
G G+ R
Sbjct: 185 GGMGGYPSR 193
Score = 98 (39.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 17/68 (25%), Positives = 40/68 (58%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
++++G L+ + + DL +FS +G +++ D+ +++ FV ++A+ A L+ ++ G
Sbjct: 3 KIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKG 62
Query: 72 SRIIVEFA 79
I VE +
Sbjct: 63 QAINVELS 70
Score = 65 (27.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 120 GDWKNKCYRCGERGHIERNCQNS 142
GD + CY CGE+GH ++C++S
Sbjct: 157 GD-QTGCYICGEQGHWSKDCRHS 178
Score = 44 (20.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 92 YLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
Y RGPP G G GH +R AG
Sbjct: 190 YPSRGPPRGGPSYGMGGPGGHPSRGYPAG 218
Score = 43 (20.2 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 232 PSPRDRRQANGSEYSGSPRGK--SRSPVDDADGP 263
P P RR + G EY PR + +R P + P
Sbjct: 223 PPPMSRRPSYG-EYGAEPRERYLTRVPTGYPERP 255
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 130 (50.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDA 60
G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA+DA
Sbjct: 12 GMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 61 RYSLNGRDVDGSRIIVEFA 79
+++G +DG + V+ A
Sbjct: 72 MDAMDGAILDGRELRVQMA 90
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRS 255
+RS SPR RR++ S S R +SRS
Sbjct: 122 RRSRSPRRRRRSRSRSRSRS-RSRSRS 147
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 224 RSPQDQRSPSPRDR---RQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSP 271
RSP+ +R R R R + S YS S R SRS + P R +SP
Sbjct: 125 RSPRRRRRSRSRSRSRSRSRSRSRYSRSRSRSYSRSR-SKSHTPNKRKSKSP 175
Score = 47 (21.6 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
+P ++S SP R + S+ S S R +SR+P + + R+ +S P+ G
Sbjct: 166 TPNKRKSKSPSRSRSRSRSK-SRS-RSRSRTPASNRES-RSRS-KSAPKSAG 213
Score = 40 (19.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 270
+S +P R+ + S R KSRS +R RS
Sbjct: 163 KSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTPASNRESRS 203
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 141 (54.7 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 38/87 (43%), Positives = 49/87 (56%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L++ +A TR DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYT-RPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA Y+LN + V G +I ++FA
Sbjct: 60 DVRDAEDALYNLNRKWVCGRQIEIQFA 86
Score = 36 (17.7 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRS 255
RS S + R ++ G S SP+ ++ S
Sbjct: 181 RSKSLQKRSKSIGKSQSSSPQKQTSS 206
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 148 (57.2 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T RDL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANGMEL 184
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 242
Query: 130 GERG 133
G G
Sbjct: 243 GGGG 246
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 133 (51.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 36/102 (35%), Positives = 49/102 (48%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDA 60
G L V L RT L +F +YGR+ DV + R+ FAFV F D RDA DA
Sbjct: 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71
Query: 61 RYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+++G ++DG + V+ A SR+ RG G G
Sbjct: 72 EAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGG 113
Score = 50 (22.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
R P RS R R + GS YS SP SRSP
Sbjct: 137 RGPSCSRS---RSRSRYRGSRYSRSPY--SRSP 164
Score = 44 (20.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 231 SPSPRDRRQANGSEYSGSPRGKSR 254
S SP R + S YS SP +SR
Sbjct: 156 SRSPYSRSPYSRSRYSRSPYSRSR 179
Score = 38 (18.4 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 224 RSP--QDQRSPSPRDRRQANGSEYSGS 248
RSP + + S SP R + S Y GS
Sbjct: 162 RSPYSRSRYSRSPYSRSRYRESRYGGS 188
Score = 36 (17.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 247 GSPRGKSRSPVDDADGPEDRNY----RSP 271
G PRG+SR G R+Y RSP
Sbjct: 103 GEPRGRSRG---GGYGRRSRSYGRRSRSP 128
Score = 35 (17.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
S RS S A S+ S R +SRS
Sbjct: 214 SSTSSRSASTSKSSSARRSKSSSVSRSRSRS 244
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 144 (55.7 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 42/108 (38%), Positives = 54/108 (50%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L+ T + LEE FS+YG I VD+ RD F FV F +P DA DA +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDG 111
+NG+ VDG I V+ A R RG G GR F G G
Sbjct: 84 MNGKQVDGRMIRVDEAGKSG-----GRSGGFRGGSRGGGRGFFRGSRG 126
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 129 (50.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 50/145 (34%), Positives = 66/145 (45%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGR-IR-DVDMKRD-----FAFVEFSDPRDADDAR 61
GGT LYV + TR+RDL F RYGR +R D+ R FAFVE+ D RDAD+A
Sbjct: 4 GGTTLYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDADEAY 63
Query: 62 YSLNGRDVDGSRII-VEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
+ ++ + + I+ +E+A R PP S R F G D D G
Sbjct: 64 HDMHNKRLGRDDILKIEWA---------------RTPPSASWR-FESGRDRDRGSD--RG 105
Query: 121 DWKNKCYRCGERGHIERNCQNSPKK 145
D + R G R SP+K
Sbjct: 106 DRSRRSPRRGRSPSPPRRRDYSPRK 130
Score = 45 (20.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS-PVDDADGPEDRNYRSPPEENG 276
D+R +D+ DR + S SP + R + D D +DR+ R ENG
Sbjct: 131 DDRRDRDRDRDRDYDRDSRRDRDRSRSPDNRDRDREMKDVDR-DDRDRR----ENG 181
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 144 (55.7 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
Score = 37 (18.1 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 251 GKSRSPVDDADGP 263
G+ RSP+ A GP
Sbjct: 302 GRDRSPLRRATGP 314
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 133 (51.9 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRD 68
TRLY+G L +D+EE FS +G +I ++ + F F+E+ D DA D + +G D
Sbjct: 7 TRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMNGFGFIEYEDAMDARDIVPAFHGSD 66
Query: 69 VDGSRIIVEFA 79
G R+ V+FA
Sbjct: 67 FKGERLTVQFA 77
Score = 50 (22.7 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 224 RSP-QDQRSPSPRDRRQANGSEYSGSPR--GKSRSPVDDADGPEDRNY 268
R P +D P P R Y+ PR G+ RSP P DR Y
Sbjct: 251 RRPYEDPYGPPPPPRYD---DPYAAPPRPYGRPRSPPRGDYAPYDRRY 295
Score = 40 (19.1 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 224 RSPQDQRSPSPR-DRRQANGSEYSGSPRGKSRSPVD---DADGPEDRNYRSPP 272
RSP+ P DRR + YS + RSP+ D G + R+PP
Sbjct: 189 RSPRRGYPPMDEYDRRYSVPRGYSPRSHYRERSPIPMRRDYYG-DGYGRRTPP 240
>TAIR|locus:2024852 [details] [associations]
symbol:CYP59 "cyclophilin 59" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0005829
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0652
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735 OMA:DRTQNRS
HSSP:Q27450 EMBL:AY568526 IPI:IPI00547571 RefSeq:NP_175776.2
UniGene:At.37348 SMR:Q6Q151 IntAct:Q6Q151 STRING:Q6Q151
EnsemblPlants:AT1G53720.1 GeneID:841810 KEGG:ath:AT1G53720
TAIR:At1g53720 InParanoid:Q6Q151 ProtClustDB:CLSN2690463
Genevestigator:Q6Q151 Uniprot:Q6Q151
Length = 506
Score = 144 (55.7 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 37/117 (31%), Positives = 54/117 (46%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDF--------AFVEFSDPRDADDARYSL 64
L+V +L T DL IFSR+G + D+ RDF AF+EF + + A + +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 65 NGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR-CFNCGIDGHWARDCKAG 120
+ +D RI V+F+ R+ + G G CF CG H A+DC G
Sbjct: 305 DNALIDDRRIHVDFSQSVSKLWSQFRQ---KDSQKGKGNGCFKCGSTDHIAKDCVGG 358
Score = 42 (19.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
R +++ S DRR+ E S +SR D+ D R+Y+ E
Sbjct: 442 RERKERESREDEDRRRRRRREESRDK--ESRRERDEDDHRSHRDYKERRRE 490
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 135 (52.6 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 38/102 (37%), Positives = 49/102 (48%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L V L RT L +F +YGR+ DV + RD FAFV F D RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 99
+DA +++G +DG + V+ A Y RG PP
Sbjct: 69 EDAMDAMDGALLDGRELRVQMARYGRPPDA---HYSRRGAPP 107
Score = 39 (18.8 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP+ ++ R R ++ S S +SRS
Sbjct: 120 RSPRRRKHSRSRSRSRSRSRSRSRSRYSRSRS 151
Score = 36 (17.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS RS + RR + S R KS+S
Sbjct: 158 RSRSRSRSKTRTPRRSKSKSPSRSRSRSKSKS 189
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 37/99 (37%), Positives = 51/99 (51%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENR--SRGYRG-GSTGGRG 102
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 37/99 (37%), Positives = 51/99 (51%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENR--SRGYRG-GSTGGRG 102
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L T LE++FS+YG+I +V + +D F FV F +P DA DA +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ VDG +I V+ A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 108 (43.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 39/106 (36%), Positives = 48/106 (45%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L + L+ +T DL F RYG I DV + RD F FV F + RDA
Sbjct: 14 DINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDA 73
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ A +G+ VDG + V A S E GRG G GR
Sbjct: 74 EHALDRTDGKLVDGRELRVTLAKYDRP----SDERGGRGG--GGGR 113
Score = 72 (30.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRS 270
RS RSP RDRR + + + R +SRSP DG P++R RS
Sbjct: 136 RSRSRTRSPPSRDRRDS--PDRRDNSRSRSRSPPPREDGSPKERRSRS 181
Score = 68 (29.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
RSP+ RS SPR R S S R + SP D D R+ PP E+G
Sbjct: 124 RSPRYSRSRSPRRSRSRTRSPPS---RDRRDSP-DRRDNSRSRSRSPPPREDG 172
Score = 50 (22.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
D R RS SP R + E R SRSP
Sbjct: 154 DRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSP 188
Score = 49 (22.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP + SP++RR + S S SP +SRS
Sbjct: 164 RSPPPREDGSPKERRSRSRSA-SRSP-SRSRS 193
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 108 (43.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 39/106 (36%), Positives = 48/106 (45%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDA 57
D G T L + L+ +T DL F RYG I DV + RD F FV F + RDA
Sbjct: 14 DINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDA 73
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+ A +G+ VDG + V A S E GRG G GR
Sbjct: 74 EHALDRTDGKLVDGRELRVTLAKYDRP----SDERGGRGG--GGGR 113
Score = 72 (30.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRS 270
RS RSP RDRR + + + R +SRSP DG P++R RS
Sbjct: 136 RSRSRTRSPPSRDRRDS--PDRRDNSRSRSRSPPPREDGSPKERRSRS 181
Score = 68 (29.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
RSP+ RS SPR R S S R + SP D D R+ PP E+G
Sbjct: 124 RSPRYSRSRSPRRSRSRTRSPPS---RDRRDSP-DRRDNSRSRSRSPPPREDG 172
Score = 50 (22.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
D R RS SP R + E R SRSP
Sbjct: 154 DRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSP 188
Score = 49 (22.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RSP + SP++RR + S S SP +SRS
Sbjct: 164 RSPPPREDGSPKERRSRSRSA-SRSP-SRSRS 193
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T RDL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 242
Query: 130 GERG 133
G G
Sbjct: 243 GGGG 246
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T RDL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 242
Query: 130 GERG 133
G G
Sbjct: 243 GGGG 246
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T RDL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 242
Query: 130 GERG 133
G G
Sbjct: 243 GGGG 246
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T RDL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 242
Query: 130 GERG 133
G G
Sbjct: 243 GGGG 246
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T RDL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 242
Query: 130 GERG 133
G G
Sbjct: 243 GGGG 246
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 149 (57.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+++VG L+S + DL+E+F +G++ + D + +AFV + DA A +L+G
Sbjct: 83 TKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFK 142
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
G + VE S+ + P G C +CG GH+A +C AG
Sbjct: 143 GRPLSVEL----------SKVQPSKQTPTGKIPCVSCGKQGHYAGECPAG 182
Score = 116 (45.9 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65
D+ +L+VG LA T +L IF YG++ + R FAFV A+ A LN
Sbjct: 2 DKGHTVKLFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELN 61
Query: 66 GRDVDGSRIIVE 77
GR+ G ++VE
Sbjct: 62 GREFKGRNLVVE 73
Score = 44 (20.5 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 123 KNKCYRCGERGHIERNC 139
K C CG++GH C
Sbjct: 163 KIPCVSCGKQGHYAGEC 179
>UNIPROTKB|B4DP17 [details] [associations]
symbol:CNBP "cDNA FLJ61146, highly similar to Cellular
nucleic acid-binding protein" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 EMBL:AC108673 EMBL:AC135587
UniGene:Hs.518249 HGNC:HGNC:13164 ChiTaRS:CNBP EMBL:AK298154
IPI:IPI00977873 SMR:B4DP17 STRING:B4DP17 Ensembl:ENST00000500450
UCSC:uc011bku.2 Uniprot:B4DP17
Length = 160
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 81 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 115
Score = 124 (48.7 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 101 SGRCFNCGIDGHWARDCKAGDWKNK---------CYRCGERGHIERNC 139
S CF CG GHWAR+C G + + CYRCGE GH+ ++C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDC 50
Score = 113 (44.8 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 57 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 100
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 94 GRGPPP-GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
GRG G C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 26 GRGMRSRGRDICYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 75
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 101 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 136
Score = 105 (42.0 bits), Expect = 0.00020, P = 0.00020
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 119 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 154
>UNIPROTKB|F1N8C2 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS GeneTree:ENSGT00510000047065
IPI:IPI00582111 EMBL:AADN02013931 Ensembl:ENSGALT00000036274
ArrayExpress:F1N8C2 Uniprot:F1N8C2
Length = 171
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 92 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 126
Score = 113 (44.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 68 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 111
Score = 111 (44.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 112 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 147
Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 48 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 86
Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 130 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 165
>UNIPROTKB|Q3T0Q6 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9913 "Bos taurus" [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
OMA:FQFMSSS EMBL:BC102298 IPI:IPI00697831 RefSeq:NP_001029396.1
UniGene:Bt.9541 ProteinModelPortal:Q3T0Q6 STRING:Q3T0Q6
PRIDE:Q3T0Q6 Ensembl:ENSBTAT00000016130 GeneID:504831
KEGG:bta:504831 CTD:7555 GeneTree:ENSGT00510000047065
HOVERGEN:HBG000397 InParanoid:Q3T0Q6 OrthoDB:EOG45HRZN
NextBio:20866851 Uniprot:Q3T0Q6
Length = 170
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 91 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 125
Score = 113 (44.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 67 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 110
Score = 111 (44.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 111 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 146
Score = 108 (43.1 bits), Expect = 0.00012, P = 0.00012
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 47 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 85
Score = 105 (42.0 bits), Expect = 0.00032, P = 0.00032
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 129 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 164
>UNIPROTKB|F1NI84 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AADN02013931
IPI:IPI00819060 Ensembl:ENSGALT00000008010 ArrayExpress:F1NI84
Uniprot:F1NI84
Length = 105
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 53 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 87
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 29 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 72
Score = 110 (43.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C++CG GH +DC K KCYRCGE GH+ NC
Sbjct: 73 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 105
Score = 108 (43.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 9 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 47
>UNIPROTKB|O42395 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:AF004942 IPI:IPI00582111 RefSeq:NP_990238.1
UniGene:Gga.3333 ProteinModelPortal:O42395 STRING:O42395
GeneID:395731 KEGG:gga:395731 InParanoid:O42395 NextBio:20815799
ArrayExpress:O42395 Uniprot:O42395
Length = 172
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 93 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 127
Score = 113 (44.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 69 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 112
Score = 111 (44.1 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 113 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 148
Score = 105 (42.0 bits), Expect = 0.00034, P = 0.00034
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 131 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 166
>UNIPROTKB|J3QQV5 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471109
UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3QQV5 Ensembl:ENST00000583741 Uniprot:J3QQV5
Length = 65
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPR 55
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPR
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPR 65
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVE 77
+NG+ VDG +I V+
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 7 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 64
Query: 58 DDARYSLNGRDVDGS-RIIVEF 78
DA +NG+ V S R + +F
Sbjct: 65 KDAARDMNGKGVPSSTRFLQQF 86
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 135 (52.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 39/126 (30%), Positives = 56/126 (44%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYS 63
R ++G LA T R L + F +YG + + + R F F+ F + + D+A +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXS--------REY-LGRGPPPGS---GRCFNCGIDG 111
+NG D+DG I V+ A R Y R P G G CF CG G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPG 127
Query: 112 HWARDC 117
H+AR+C
Sbjct: 128 HFAREC 133
Score = 38 (18.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSR 254
D +D R S DR + Y G SR
Sbjct: 171 DRYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSR 203
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 132 (51.5 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 132 (51.5 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 144 (55.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 41/142 (28%), Positives = 63/142 (44%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDAR 61
G+R++VG L+ RDLE FSR+G I RD R F F+ F+D R D++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 62 YSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCG-IDGHWARDCKAG 120
++GRD G R+I + RG G G + G
Sbjct: 66 REMHGRDF-GDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGGGRVG 124
Query: 121 DWKNKCYRCGERGHIERNCQNS 142
+ ++C++CG GH R+C ++
Sbjct: 125 E--DECFKCGRVGHWARDCPSA 144
>POMBASE|SPBC11C11.08 [details] [associations]
symbol:srp1 "SR family protein, human SRFS2 ortholog
Srp1" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC11C11.08 GO:GO:0005634 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0045292 EMBL:U66833 PIR:T48696 RefSeq:NP_596398.1
ProteinModelPortal:Q10193 STRING:Q10193 PRIDE:Q10193
EnsemblFungi:SPBC11C11.08.1 GeneID:2539818 KEGG:spo:SPBC11C11.08
eggNOG:NOG77895 OMA:DCYRYSK OrthoDB:EOG473T21 NextBio:20800967
Uniprot:Q10193
Length = 275
Score = 100 (40.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGR-IR-DVDM-----KRDFAFVEFSDPRDADDARYSLN 65
LYV R+R+L F +G IR D+ + R FAFVE+ D RDA+DA Y ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 66 GRDVD-GSRII-VEFA 79
GR ++ G ++ VE+A
Sbjct: 69 GRRLERGGGVLRVEWA 84
Score = 86 (35.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
DERS D+RS SPR R + S SP G+SRSP D P+ RN+RSP
Sbjct: 131 DERS--DRRSMSPRYRSR------SRSPDGRSRSPDYDRRSPK-RNHRSP 171
Score = 48 (22.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 224 RSPQDQRSPSPR-DRRQANGSEYSGSPRG--KSRSPVDD 259
RSP D RS SP DRR + S SP +SPV++
Sbjct: 148 RSP-DGRSRSPDYDRRSPKRNHRSPSPVSFAPQKSPVEN 185
Score = 45 (20.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 237 RRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RR+ G + S R +SRSP P + RSP
Sbjct: 99 RRERGGRVHGDSGRLRSRSP-----SPHEARSRSP 128
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 145 (56.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 145 (56.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 145 (56.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 144 (55.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 144 (55.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 144 (55.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 144 (55.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 144 (55.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 144 (55.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 144 (55.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 144 (55.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ +++L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMHVQLSTSRL------RTAPGMGDQSG---CYRCGKEGHWSKEC 175
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VNINVE 68
Score = 62 (26.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD ++ CYRCG+ GH + C
Sbjct: 157 GD-QSGCYRCGKEGHWSKEC 175
>UNIPROTKB|P62633 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006695 "cholesterol biosynthetic process" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
EMBL:CH471052 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0006695 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250 CTD:7555
HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:M28372 EMBL:U19765
EMBL:AY329622 EMBL:AK054592 EMBL:DQ092367 EMBL:DQ091187
EMBL:AK314380 EMBL:BT019613 EMBL:AC108673 EMBL:AC135587
EMBL:BC000288 EMBL:BC014911 EMBL:BC093058 IPI:IPI00430812
IPI:IPI00430813 IPI:IPI00430814 IPI:IPI00895911 IPI:IPI00967344
PIR:A32760 RefSeq:NP_001120665.1 RefSeq:NP_001120666.1
RefSeq:NP_001120668.1 RefSeq:NP_003409.1 UniGene:Hs.518249
ProteinModelPortal:P62633 SMR:P62633 IntAct:P62633 STRING:P62633
PhosphoSite:P62633 DMDM:50401852 PaxDb:P62633 PRIDE:P62633
DNASU:7555 Ensembl:ENST00000422453 Ensembl:ENST00000446936
Ensembl:ENST00000451728 Ensembl:ENST00000502976
Ensembl:ENST00000504813 GeneID:7555 KEGG:hsa:7555 UCSC:uc003elq.4
UCSC:uc003elr.4 GeneCards:GC03M128886 HGNC:HGNC:13164 MIM:116955
MIM:602668 neXtProt:NX_P62633 Orphanet:606 PharmGKB:PA37737
InParanoid:P62633 PhylomeDB:P62633 ChiTaRS:CNBP GenomeRNAi:7555
NextBio:29559 ArrayExpress:P62633 Bgee:P62633 CleanEx:HS_CNBP
Genevestigator:P62633 GermOnline:ENSG00000169714 Uniprot:P62633
Length = 177
Score = 129 (50.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|Q4R501 [details] [associations]
symbol:Q4R501 "Brain cDNA, clone: QnpA-14556, similar to
human zinc finger protein 9 (a cellular retroviral nucleicacid
binding protein) (ZNF9)," species:9541 "Macaca fascicularis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005783 "endoplasmic
reticulum" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005783 GO:GO:0005829 GO:GO:0005634 GO:GO:0046872
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOVERGEN:HBG000397 EMBL:AB169743
EMBL:AB174174 ProteinModelPortal:Q4R501 SMR:Q4R501 PRIDE:Q4R501
Uniprot:Q4R501
Length = 177
Score = 129 (50.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|Q5R5R5 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K09250 CTD:7555 GeneTree:ENSGT00510000047065 HOVERGEN:HBG000397
OMA:CPNGQGG EMBL:CR860791 RefSeq:NP_001126703.1 UniGene:Pab.18652
ProteinModelPortal:Q5R5R5 SMR:Q5R5R5 PRIDE:Q5R5R5
Ensembl:ENSPPYT00000015613 GeneID:100173703 KEGG:pon:100173703
InParanoid:Q5R5R5 Uniprot:Q5R5R5
Length = 177
Score = 129 (50.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>RGD|621807 [details] [associations]
symbol:Cnbp "CCHC-type zinc finger, nucleic acid binding protein"
species:10116 "Rattus norvegicus" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISO;ISS] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 RGD:621807 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0006351
GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:D45254 EMBL:AF242550 EMBL:AY329624
EMBL:AB158421 EMBL:AB158422 EMBL:BC062225 IPI:IPI00201505
PIR:JC2512 RefSeq:NP_072120.1 UniGene:Rn.6187
ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 129 (50.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|P62634 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:621807 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:D45254
EMBL:AF242550 EMBL:AY329624 EMBL:AB158421 EMBL:AB158422
EMBL:BC062225 IPI:IPI00201505 PIR:JC2512 RefSeq:NP_072120.1
UniGene:Rn.6187 ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 129 (50.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 136 (52.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 97 PPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
P G+ C+NCG GH +R+C + CYRCG GHI R C
Sbjct: 22 PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVGHISREC 64
Score = 124 (48.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 144
C++CG GH ARDC G KCY CGE GH+ R+C K
Sbjct: 113 CYSCGGFGHMARDCTQGQ---KCYNCGETGHVSRDCPTEAK 150
Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 102 GR-CFNCGIDGHWARDC-KAGDWKNKCYRCGERGHIERNCQNSPKK 145
GR CFNCG H ARDC K G CY CG +GH+ R C +PK+
Sbjct: 5 GRVCFNCGEATHQARDCPKKGT--PTCYNCGGQGHVSRECTVAPKE 48
Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 103 RCFNCGIDGHWARDCKA-GDWKNKCYRCGERGHIERNCQNS 142
+C+NCG GH +RDC + CY+C + GHI+ C N+
Sbjct: 131 KCYNCGETGHVSRDCPTEAKGERVCYQCKQPGHIQSACPNN 171
Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 99 PGSGRCFNCGIDGHWARDC-KAGDWKN-----KCYRCGERGHIERNC 139
P C+ CG GH +R+C +AG+ + +CY+CG GHI RNC
Sbjct: 46 PKEKSCYRCGAVGHISRECPQAGENERPAGGQECYKCGRVGHIARNC 92
>MGI|MGI:88431 [details] [associations]
symbol:Cnbp "cellular nucleic acid binding protein"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
MGI:MGI:88431 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 ChiTaRS:CNBP EMBL:L12693 EMBL:Z11870
EMBL:X63866 EMBL:Z11871 EMBL:U20326 EMBL:AY176064 EMBL:AK075760
EMBL:AK078427 EMBL:BC058723 IPI:IPI00137229 IPI:IPI00330767
IPI:IPI00454151 PIR:I48297 PIR:I48298 PIR:I49259
RefSeq:NP_001103215.1 RefSeq:NP_038521.1 UniGene:Mm.290251
ProteinModelPortal:P53996 SMR:P53996 IntAct:P53996 STRING:P53996
PhosphoSite:P53996 PaxDb:P53996 PRIDE:P53996
Ensembl:ENSMUST00000032138 Ensembl:ENSMUST00000113619 GeneID:12785
KEGG:mmu:12785 InParanoid:P53996 OMA:CPNGQGG NextBio:282182
Bgee:P53996 CleanEx:MM_CNBP Genevestigator:P53996
GermOnline:ENSMUSG00000030057 Uniprot:P53996
Length = 178
Score = 129 (50.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 99 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 133
Score = 113 (44.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 118
Score = 111 (44.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 119 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 154
Score = 108 (43.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE-DEACYNCGRGGHIAKDCKE-PKR 93
Score = 105 (42.0 bits), Expect = 0.00041, P = 0.00041
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 137 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 172
>UNIPROTKB|E2RPP3 [details] [associations]
symbol:E2RPP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
EMBL:AAEX03014231 Ensembl:ENSCAFT00000038706 Uniprot:E2RPP3
Length = 367
Score = 128 (50.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++ L + T + LE +F +Y + R+ + + FAFV F P DA D NG+ +DG
Sbjct: 9 KLFISGLNTETNEKALEAVFGKYMKDRETNKSKGFAFVIFESPADAKDTARDTNGKSLDG 68
Query: 72 SRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDG 111
I VE A SR PPP R G+ G
Sbjct: 69 KAIKVEQATKPSFES--SRH---EPPPPLRSRGLPRGLRG 103
Score = 52 (23.4 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 233 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
SPRD + YS SR D A P D YR
Sbjct: 186 SPRDDGYSTKDSYSSRDYPDSRDTRDYAPPPRDYTYR 222
Score = 41 (19.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 226 PQDQRSPSPRDRRQANGSE-YSGSPRGKSRSPVDDADGPEDRNYRSPPEE 274
P+ + PS RD + + YS SR D D + R+Y PP +
Sbjct: 172 PRRELLPSRRDVYLSPRDDGYSTKDSYSSR---DYPDSRDTRDYAPPPRD 218
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 141 (54.7 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++ + +L F YG + + D+ +D+AFV DA +A L+ +
Sbjct: 78 TKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDC 117
G R+ V+ + R G G G C+ CG +GHW+++C
Sbjct: 138 GKRMRVQLSTSRL------RTAPGMGDKSG---CYRCGKEGHWSKEC 175
Score = 97 (39.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+L++G L +++ +F +YG++ + D+ +++ FV D A+DA +L+ + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 72 SRIIVE 77
I VE
Sbjct: 63 VCINVE 68
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 120 GDWKNKCYRCGERGHIERNC 139
GD K+ CYRCG+ GH + C
Sbjct: 157 GD-KSGCYRCGKEGHWSKEC 175
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 136 (52.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 140 (54.3 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 43/124 (34%), Positives = 60/124 (48%)
Query: 18 LASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69
L+ T DL E+FS+YG I DV + R FAFV F + DA +A+ NG ++
Sbjct: 117 LSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 176
Query: 70 DGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRC 129
DG RI V+F+ Y+GR P GS R + D + R D+ ++ YR
Sbjct: 177 DGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSRRRDY-YDRGYDRGYDDRDYYSRSYRG 234
Query: 130 GERG 133
G G
Sbjct: 235 GGGG 238
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 125 (49.1 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 39/114 (34%), Positives = 52/114 (45%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L T + LE F +YGRI R+ + R FAF+ F P DA
Sbjct: 5 DRPG--KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDG 111
A +NG+ +DG I V A R RGPP R + G+ G
Sbjct: 63 KAAVRDMNGKSLDGKAIKV--AQATKPAFESGR----RGPPLSRSRGRSRGLRG 110
Score = 56 (24.8 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 223 ERSPQDQRSPSPRDRRQA-NGSEYSGSPRG-KSRSPVDDA-DGPEDRNYRSPP 272
+R P R P +R A +G SGS G + R+P DG E R PP
Sbjct: 147 KRGPPPPRRAGPPPKRAAPSGPARSGSGGGMRGRAPAARGRDGYEGPPRRDPP 199
Score = 46 (21.3 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 223 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 276
E + +D S RD + G G+ R D AD P +YR P E G
Sbjct: 240 EYTYRDYGHSSARDECPSRGYGDRDGYGGRDR---DYADHPSGGSYRDPFESYG 290
Score = 41 (19.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 229 QRSPSPRDRRQANGSEYSG-SPRGKSRSPVDDADGPEDRNYRSPPEE 274
+R P P R GS G SPR S D + + R++ P E
Sbjct: 195 RRDPPPPRRDPYLGSREGGYSPRD-GYSSRDYSSARDARDFAPSPRE 240
>UNIPROTKB|E2RPD7 [details] [associations]
symbol:CNBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:CPNGQGG EMBL:AAEX03012021
UniGene:Cfa.4499 ProteinModelPortal:E2RPD7 PRIDE:E2RPD7
Ensembl:ENSCAFT00000006937 NextBio:20852160 Uniprot:E2RPD7
Length = 179
Score = 129 (50.5 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 100 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 134
Score = 113 (44.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 76 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 119
Score = 112 (44.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKE-PKR 94
Score = 111 (44.1 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 120 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 155
Score = 105 (42.0 bits), Expect = 0.00042, P = 0.00042
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 138 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 173
>UNIPROTKB|F8WFK2 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:621807 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
IPI:IPI00201505 ProteinModelPortal:F8WFK2 SMR:F8WFK2
Ensembl:ENSRNOT00000013884 Uniprot:F8WFK2
Length = 179
Score = 129 (50.5 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 100 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 134
Score = 113 (44.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 76 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 119
Score = 112 (44.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+ CG GH A+DC + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKE-PKR 94
Score = 111 (44.1 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 120 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 155
Score = 105 (42.0 bits), Expect = 0.00042, P = 0.00042
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 138 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 173
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 120 (47.3 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R + L+V ++ +R DL F RYG I DV D R FA+++F
Sbjct: 1 MSRYM-RPPNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + V G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWVCGRQIEIQFA 86
Score = 54 (24.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 228 DQRSPSPRD--RRQANGSEYSGSP-RGKSRSPVDDADGPEDRNYRSPPEEN 275
D+ S RD R + + + S SP R ++R ++DG + + P++N
Sbjct: 159 DRHRGSTRDHHRSRTDAASRSRSPSRSRARGGRRESDGARSHTHSASPQQN 209
Score = 38 (18.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
RS +RS SP R+ S+ RG++ S
Sbjct: 121 RSYDRRRSRSPSYDRRRRRSDSPRESRGRTHS 152
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 132 (51.5 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 37/99 (37%), Positives = 51/99 (51%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENR--SRGYRG-GSTGGRG 102
>ZFIN|ZDB-GENE-030131-5045 [details] [associations]
symbol:cnbpa "CCHC-type zinc finger, nucleic acid
binding protein a" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0060322 "head development" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP] [GO:0014036
"neural crest cell fate specification" evidence=IMP] [GO:0051216
"cartilage development" evidence=IMP] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-5045 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0003697 GO:GO:0051216 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 GO:GO:0060322 GO:GO:0014036
InterPro:IPR025836 Pfam:PF14392 EMBL:AY228240 IPI:IPI00481422
UniGene:Dr.31379 STRING:Q801Z9 InParanoid:Q801Z9
ArrayExpress:Q801Z9 Uniprot:Q801Z9
Length = 163
Score = 123 (48.4 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 94 GRGPPPGSGR---CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
GRG G G+ C+ CG GH ARDC+ + + CY C GHI R+C+ PKK
Sbjct: 27 GRGRGRGRGKDLFCYRCGEQGHIARDCEQTE--DACYNCHRSGHISRDCKE-PKK 78
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 101 SGRCFNCGIDGHWARDC-KAGDWKNK---------CYRCGERGHIERNCQNS 142
+ CF CG GHW ++C AG + + CYRCGE+GHI R+C+ +
Sbjct: 5 TSECFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQT 56
Score = 107 (42.7 bits), Expect = 0.00012, P = 0.00012
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+NCG GH ARDC + + KCY CG GH ++ C
Sbjct: 84 CYNCGKAGHVARDCDHAN-EQKCYSCGGFGHFQKLC 118
Score = 107 (42.7 bits), Expect = 0.00012, P = 0.00012
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 104 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNS 142
C+NC GH +RDCK + + CY CG+ GH+ R+C ++
Sbjct: 60 CYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHA 100
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 123 (48.4 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 94 GRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK-CYRCGERGHIERNC 139
G G G +C+NCG GH +R+C ++G + K CY+C E GHI R+C
Sbjct: 99 GEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 102 (41.0 bits), Expect = 0.00031, P = 0.00031
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 94 GRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK---------CYRCGERGHIERNCQNS 142
GR G C+NC GH++RDC K G + CY CG RGH R+C ++
Sbjct: 27 GRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSA 85
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 120 (47.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD-- 70
++ G R DLE +F +YG++ VDMK FAFV D RDA+DA +L+ +
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 71 GSRIIVEF 78
G R+ VE+
Sbjct: 64 GRRLRVEW 71
Score = 107 (42.7 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 19 ASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78
A TR+RDLE F YG+I +V ++R+FAF+++ DA A + N + I VE+
Sbjct: 105 AQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164
Query: 79 A 79
A
Sbjct: 165 A 165
Score = 59 (25.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 225 SPQDQRSPSPRDRRQANGSEYS---GSPR-GKSRSPVD---DADGPE-DRNYRSP 271
SP+ +R SP DRR+ + S Y GSP G+ SPV + P+ R RSP
Sbjct: 177 SPERRRDRSP-DRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSP 230
Score = 54 (24.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 224 RSPQ----DQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPE-ENG 276
RSP+ + RSP P ++R+ + S R +SRSP E RS ENG
Sbjct: 263 RSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENG 320
Score = 44 (20.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 225 SPQDQ--RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 272
SP++ R+ SPR R + S R +SRSP + R RSPP
Sbjct: 254 SPENGAVRNRSPRKGRGESRSPPPYEKRRESRSP---PPYEKRRESRSPP 300
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 250 RGKSRSPVDDADGPEDRNYRSP 271
RG SP D DR RSP
Sbjct: 172 RGNGYSPERRRDRSPDRRRRSP 193
>GENEDB_PFALCIPARUM|PF10_0217 [details] [associations]
symbol:PF10_0217 "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 127 (49.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 42/144 (29%), Positives = 68/144 (47%)
Query: 2 PRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPR 55
PR+ + +YVG L ++ ++F +YGRI+ +D+K +AFV + D +
Sbjct: 5 PRFSK--SSSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLK 62
Query: 56 DADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWAR 115
DAD A +G DG R+ VE + ++ G GPP R N I +
Sbjct: 63 DADYAIERRDGYKFDGFRLRVEHSGENRSFGKYRKKDDGVGPPI---RTENRVIVTNLPD 119
Query: 116 DCKAGDWKNKCYRCGERGH--IER 137
+C+ K+ +CG+ G+ IER
Sbjct: 120 NCRWQHLKDIMRQCGDVGYANIER 143
Score = 55 (24.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
RS RS R++ N +E S K S D+D ++++YR
Sbjct: 283 RSDHGSRSGDRSYRKKKNKNESSSDVLSKHSSAYRDSDSEKNKSYR 328
Score = 42 (19.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 243 SEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
S Y SRS D DR+YR +N
Sbjct: 270 SSYENQNDDVSRSRSDHGSRSGDRSYRKKKNKN 302
Score = 38 (18.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 231 SPSPRDRRQ-ANGSEYSGSPRGKSRSPVDDADGPEDRN 267
SP + RR+ +N S S R +SR ++ RN
Sbjct: 197 SPKYKKRRRYSNESGLSDRDRSRSRRYSKSSNSSNKRN 234
Score = 37 (18.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 222 DERSPQDQRSPSPRDRRQANGSE--YSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
++RS +R+ S +R+ N + S R S SP A R +S + N
Sbjct: 357 EDRSNSRKRNASSDFKRELNSDDDKKSKKKRSYSASP-GSAYKSSSRELKSQDKSN 411
>UNIPROTKB|Q8IJI0 [details] [associations]
symbol:PF10_0217 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 127 (49.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 42/144 (29%), Positives = 68/144 (47%)
Query: 2 PRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPR 55
PR+ + +YVG L ++ ++F +YGRI+ +D+K +AFV + D +
Sbjct: 5 PRFSK--SSSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLK 62
Query: 56 DADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWAR 115
DAD A +G DG R+ VE + ++ G GPP R N I +
Sbjct: 63 DADYAIERRDGYKFDGFRLRVEHSGENRSFGKYRKKDDGVGPPI---RTENRVIVTNLPD 119
Query: 116 DCKAGDWKNKCYRCGERGH--IER 137
+C+ K+ +CG+ G+ IER
Sbjct: 120 NCRWQHLKDIMRQCGDVGYANIER 143
Score = 55 (24.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 269
RS RS R++ N +E S K S D+D ++++YR
Sbjct: 283 RSDHGSRSGDRSYRKKKNKNESSSDVLSKHSSAYRDSDSEKNKSYR 328
Score = 42 (19.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 243 SEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
S Y SRS D DR+YR +N
Sbjct: 270 SSYENQNDDVSRSRSDHGSRSGDRSYRKKKNKN 302
Score = 38 (18.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 231 SPSPRDRRQ-ANGSEYSGSPRGKSRSPVDDADGPEDRN 267
SP + RR+ +N S S R +SR ++ RN
Sbjct: 197 SPKYKKRRRYSNESGLSDRDRSRSRRYSKSSNSSNKRN 234
Score = 37 (18.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 222 DERSPQDQRSPSPRDRRQANGSE--YSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 275
++RS +R+ S +R+ N + S R S SP A R +S + N
Sbjct: 357 EDRSNSRKRNASSDFKRELNSDDDKKSKKKRSYSASP-GSAYKSSSRELKSQDKSN 411
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 116 (45.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 38/110 (34%), Positives = 52/110 (47%)
Query: 2 PRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSD 53
P D Y L V + RT + DL +F++YG++ DV + RD FAFV +
Sbjct: 10 PDISDTYS---LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66
Query: 54 PRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
+A A L+GR VDG I V+FA S+ + PPP S R
Sbjct: 67 KDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVE-PPPKSRR 115
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 222 DERSPQDQRSPSPRD---RRQANGSEYSGSPRGKSRSPVDDADGP 263
+ERSP +RS SPR ++ + E S R RSP + P
Sbjct: 242 NERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSPGSPAP 286
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 255
D R RS SP ++R+ G Y R SRS
Sbjct: 179 DHRRRTRSRSASPDEKRRVRG-RYDNESRSHSRS 211
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPE--DRNYR 269
RSP+ RSP R R +Y R +SRS D + E DR++R
Sbjct: 137 RSPRRSRSPRRRSRDDYREKDYR--KRSRSRS-YDRRERHEEKDRDHR 181
Score = 51 (23.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 224 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 261
RSP+ RSP PR RR S SPR +SR + D
Sbjct: 125 RSPRRSRSP-PR-RRSPRRSR---SPRRRSRDDYREKD 157
Score = 48 (22.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 225 SPQDQRSPSPRDRRQANGSEYSGSPRG---KSRSPVDDADGPEDR-NYRSP 271
SP + SP R ++ S SPR + SP + PE R N RSP
Sbjct: 230 SPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPSKEMS-PERRSNERSP 279
Score = 47 (21.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 232 PSPRDRRQANGS-EYSGSPRGKSRSP 256
P P+ RR + S S SPR +SRSP
Sbjct: 109 PPPKSRRSRSRSPRRSRSPR-RSRSP 133
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 256
D R RS R+R + ++ R +S SP
Sbjct: 157 DYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASP 191
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 132 (51.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 40/106 (37%), Positives = 50/106 (47%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L T + LE F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 103
A +NG+ +DG I V A SR RGPPP R
Sbjct: 63 KAAARDMNGKSLDGKAIKV--AQATKPAFESSR----RGPPPPRSR 102
Score = 43 (20.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 229 QRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPE 273
+RSPS R +G + SR+P+ GP R PP+
Sbjct: 119 RRSPS-RGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPK 162
Score = 40 (19.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 18/50 (36%), Positives = 21/50 (42%)
Query: 222 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
D S +R P P RR Y G PR + S DG R+YR P
Sbjct: 188 DGYSGPPRREPLP-PRRDP----YLG-PRDEGYS---SRDGYSSRDYREP 228
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 140 (54.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+L+VG ++S +++L F YG + + D+ +D+AFV DA +A L+
Sbjct: 78 TKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQ 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCG 130
G + V+ + R G G G C+ CG +GHW+++C +N YR G
Sbjct: 138 GKLMSVKLSTSRL------RTAPGMGERTG---CYRCGQEGHWSKECPLD--QNGSYREG 186
Score = 111 (44.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+++VG L+ T + ++ +FS+YG+I + D+ ++F FV +AD+A +L+ ++G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 72 SRIIVEFA 79
+ VE +
Sbjct: 63 MAMNVEMS 70
Score = 60 (26.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 126 CYRCGERGHIERNC 139
CYRCG+ GH + C
Sbjct: 162 CYRCGQEGHWSKEC 175
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 131 (51.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 27/86 (31%), Positives = 48/86 (55%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+++VG +AS T +L +F +YG + D D+ +++ FV + A A +L+ +V+G
Sbjct: 3 KIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNG 62
Query: 72 SRIIVEFAXXXXXXXXXSREYLGRGP 97
SRI VE+A ++ Y+G P
Sbjct: 63 SRITVEYATTKVRNA--TKIYVGNVP 86
Score = 118 (46.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T++YVG + + ++E+F +G++ + D+ +++AFV +A DA LN VD
Sbjct: 78 TKIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVD 137
Query: 71 GSRIIVEFAXXXXXXXXXSREYLGRGPP 98
G +I V + +Y PP
Sbjct: 138 GQKIFVSLSRSNPSRNGRGEDYYPPPPP 165
Score = 41 (19.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 223 ERSPQDQRSPSP-RDRRQANGSEY--SGSPRGKSRS 255
+R P D+R P P R S Y SP G RS
Sbjct: 232 DRDPYDRRLPPPQRPVSPPVASRYYRERSPLGGRRS 267
Score = 41 (19.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 18/50 (36%), Positives = 19/50 (38%)
Query: 226 PQDQRSPSPRD--RRQANGSEYSG-SPRGKSRSPVDDADGPEDRNYRSPP 272
P RS RD R Y+ SPR R P D P R SPP
Sbjct: 202 PPPPRSYYERDPYERSLRHDPYAPPSPRFYDRDPYDRRLPPPQRPV-SPP 250
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 130 (50.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFSDPRDADDARY 62
T L+V +A TRS DL F RYG I DV D R FA+V+F D RDA+DA +
Sbjct: 10 TSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALH 69
Query: 63 SLNGRDVDGSRIIVEFA 79
+L+ + + G +I ++FA
Sbjct: 70 NLDRKWICGRQIEIQFA 86
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 226 PQDQRSPSPRDRRQANGSEYSGSPRGKSR 254
PQ RS S DR++ E R K R
Sbjct: 153 PQRSRSHSDNDRKKERKKERK-KERKKER 180
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 228 DQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDR 266
++RS SPR+ R A G P+ +SRS D+ D ++R
Sbjct: 138 NRRSYSPRNSRPA------GRPQ-RSRSHSDN-DRKKER 168
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 136 (52.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L+ T + LE++FS+YG+I R+ R F FV F + DA DA +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 102
+NG+ VDG +I V+ A SR Y G G G G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR--SRGYRG-GSAGGRG 102
>UNIPROTKB|J9NRQ2 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AAEX03026520
Ensembl:ENSCAFT00000049751 OMA:EEQKCYS Uniprot:J9NRQ2
Length = 146
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
C+ CG GH ARDC + + KCY CGE GHI+++C
Sbjct: 92 CYTCGRPGHLARDCDRQE-EQKCYSCGEYGHIQKDC 126
Score = 106 (42.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
+C++CG GH +DC + KCYRCGE GH+ NC
Sbjct: 112 KCYSCGEYGHIQKDCT----QVKCYRCGETGHVAINC 144
Score = 104 (41.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 94 GRGPPPGSGR----CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 145
GRG P S C+ CG GH A++C ++ CY CG GHI ++C PK+
Sbjct: 34 GRGSPCSSTNLPDICYRCGKSGHHAKNCDL--LEDICYNCGRSGHIAKDCIE-PKR 86
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 104 CFNCGIDGHWARDC--KAGDWKNKCYRCGERGHIERNCQNSPKK 145
C+NCG GH A+DC + + CY CG GH+ R+C ++
Sbjct: 68 CYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHLARDCDRQEEQ 111
>DICTYBASE|DDB_G0293328 [details] [associations]
symbol:DDB_G0293328 "Cellular nucleic acid-binding
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
Length = 131
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 143
+C+ C GH+ARDC+ G NKCY CG GHI ++C SP
Sbjct: 61 KCYQCNGFGHFARDCRRGR-DNKCYNCGGLGHISKDCP-SP 99
Score = 95 (38.5 bits), Expect = 0.00032, P = 0.00032
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 103 RCFNCGIDGHWARDCKA----GDWKN--KCYRCGERGHIERNC 139
+C+NCG GH ++DC + G ++ KCY+C + GHI + C
Sbjct: 82 KCYNCGGLGHISKDCPSPSTRGQGRDAAKCYKCNQPGHIAKAC 124
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 5 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 58 DDARYSLNGR 67
DA +NG+
Sbjct: 63 KDAARDMNGK 72
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 119 (46.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDA 57
DR G +L++G L + T + LE +F +YGRI R+ + R FAFV F P DA
Sbjct: 7 DRPG--KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 64
Query: 58 DDARYSLNGR 67
DA +NG+
Sbjct: 65 KDAARDMNGK 74
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 119 (46.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD-- 70
++ G R DLE +F +YG++ VDMK FAFV D RDA+DA +L+ +
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 71 GSRIIVEF 78
G R+ VE+
Sbjct: 64 GRRLRVEW 71
Score = 107 (42.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 19 ASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78
A TR+RDLE+ F YG+I +V ++R+FAF+++ DA A + N + I VE+
Sbjct: 106 ADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEY 165
Query: 79 A 79
A
Sbjct: 166 A 166
Score = 55 (24.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 225 SPQDQRSPSPRDRRQANGSEYS---GSPR-GKSRSPV----DDADGPEDRNYRSP 271
SP+ +R SP +RR+ + S Y GSP G+ SPV + P+ RSP
Sbjct: 178 SPERRRDRSP-ERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSP 231
Score = 55 (24.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 223 ERSPQD---QRSPSPRDRRQANGSEY------SGSPRGKSR--SPVDDADGPEDRNYRSP 271
ER+ D +RSPSP + + EY + SPR + R SP + P ++ R
Sbjct: 219 ERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMS 278
Query: 272 PEEN 275
P +
Sbjct: 279 PNHS 282
Score = 53 (23.7 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 231 SPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPE-ENG 276
S SP ++R+ +S + R+ V + + P +R RS ENG
Sbjct: 267 SRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSRSSPENG 313
Score = 52 (23.4 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 225 SPQDQRSPSPRD--RRQANGSEYSG--SPRGKSRSP 256
SP++ + SP RR ++G Y G SP KSRSP
Sbjct: 309 SPENGQVESPGSIGRRDSDGG-YDGAESPMQKSRSP 343
Score = 38 (18.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 250 RGKSRSPVDDADGPEDRNYRSP 271
RG SP D +R RSP
Sbjct: 173 RGNGHSPERRRDRSPERRRRSP 194
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 127 (49.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYG--------RIRDVDMKRDFAFVEFSDPRDADDARYS 63
+L++G L+ T + LE+ FS+YG R R+ + R F FV F +P DA DA
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ VDG I V+ A
Sbjct: 66 MNGKSVDGRTIRVDEA 81
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 117 (46.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRI--------RDVDMKRDFAFVEFSDPRDADDARYS 63
+L+VG L T R LE+ FS +G I R+ R F F+ F++P A +A +
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 64 LNGRDVDGSRIIVEFAXXXXXXXXXSR--EY-LGRGPPPGSG 102
+NG +DG +I V+ A Y GRG P G G
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGYERGRGYPRGGG 108
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 128 (50.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNG 66
GTR+YVG L + + DLE F++YG++ V + + FAFVEF DA+ A LNG
Sbjct: 6 GTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNG 65
Query: 67 RDVDGSRIIVEFA 79
++ GS++ VE +
Sbjct: 66 SELLGSQLRVEIS 78
>UNIPROTKB|F1LVK5 [details] [associations]
symbol:F1LVK5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
Length = 249
Score = 132 (51.5 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 39/117 (33%), Positives = 57/117 (48%)
Query: 25 RDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76
RDL E+FS+YG + DV + R+FAFV F + DA +A+ NG ++DG + V
Sbjct: 101 RDLREVFSKYGPVADVSIVYDQQSSQSREFAFVCFENIDDAKEAKEHANGMELDGCQSRV 160
Query: 77 EFAXXXXXXXXXSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERG 133
+F+ Y+ R P GS RC D + R D+ ++ YR G G
Sbjct: 161 DFSITKRLHTPTPGIYMER-PTCGSSRCQGY-YDRGYDRGYDDRDYYSRPYRGGGGG 215
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 132 (51.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 132 (51.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 132 (51.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV----DM----KRDFAFVEFS 52
M RY R T L+V +A TRS DL F RYG I DV D R FA+V+F
Sbjct: 1 MSRYL-RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFA 79
D RDA+DA ++L+ + + G +I ++FA
Sbjct: 60 DVRDAEDALHNLDRKWICGRQIEIQFA 86
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 105 (42.0 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 7 RYGGTR-------LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEF 51
R+GG+R L V L R DL F ++G ++D+ + RD F F++F
Sbjct: 26 RFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
Query: 52 SDPRDADDARYSLNGRDVDGSRIIVEFA 79
DP DA +A++ ++G + G + V FA
Sbjct: 86 MDPADAAEAKHQMDGYLLLGRELTVVFA 113
Score = 65 (27.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 226 PQDQRSPSPR-DRRQANGSE-YSGSP--RGKSRS-PVDDADGPEDRNY-RSPPEENG 276
P+ RSP PR RR + S Y+ P R +SRS D ++R+Y RSPP NG
Sbjct: 143 PRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPH-NG 198
Score = 53 (23.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 230 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 271
RS SP+DRR YS SP + G + RSP
Sbjct: 175 RSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSP 216
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 226 PQDQRSPSPRDRRQANG 242
P+ RSP+P R NG
Sbjct: 240 PRQSRSPTPVPRGAQNG 256
WARNING: HSPs involving 230 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.137 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 214 0.00085 112 3 11 22 0.43 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 480
No. of states in DFA: 545 (58 KB)
Total size of DFA: 180 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.64u 0.20s 18.84t Elapsed: 00:00:01
Total cpu time: 18.67u 0.20s 18.87t Elapsed: 00:00:01
Start: Fri May 10 04:45:38 2013 End: Fri May 10 04:45:39 2013
WARNINGS ISSUED: 2