BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021642
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 258 bits (659), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 180/316 (56%), Positives = 205/316 (64%), Gaps = 41/316 (12%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDA 60
MPRYDDRYG TRLYVGRL+SRTR+RDLE +FSRYGR+RDVDMKRD+AFVEFSDPRDADDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
Query: 61 RYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
RY L+GRD DGSRI VE +RG PR GSR+ RGPPPGSGRCFNCG+DGHWARDC AG
Sbjct: 61 RYYLDGRDFDGSRITVEASRGAPR---GSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAG 117
Query: 121 DWKNKCYRCGERGHIERNCQNSPKKLRPR---SYSRSPSPRRGRSRSRSYSRGRSDSRSR 177
DWKNKCYRCGERGHIERNC+NSP + R SYSRSP +SRS R S SRS
Sbjct: 118 DWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPV----KSRSPRRRRSPSRSRSY 173
Query: 178 SPVKRDRSVERFERRTRSPRD-SRSPKRRRNSPPSSKGRKRSPTPDERSPQDQRSPSPRD 236
S + RR +S D SRSPK S S KGR +S +PD + D
Sbjct: 174 SRGRSYSRSRSPVRREKSVEDRSRSPKAMERS-VSPKGRDQSLSPDRKVI---------D 223
Query: 237 RRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENGRSRSRSLSPVPRD--DRSPI 294
GS+Y GSP+ ++ +G RN SP G SPV + DRSPI
Sbjct: 224 ASPKRGSDYDGSPK-------ENGNG---RNSASPIVGGGE------SPVGLNGQDRSPI 267
Query: 295 DDDDNHG--DPRGSES 308
DD+ P+GSES
Sbjct: 268 DDEAELSRPSPKGSES 283
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 121/147 (82%), Positives = 134/147 (91%), Gaps = 3/147 (2%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDA 60
MPRYDDRYG TRLYVGRL+SRTR+RDLE +FSRYGR+RDVDMKRD+AFVEF DPRDADDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60
Query: 61 RYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120
R+ L+GRD DGSRI VEF+RG PR GSR++ RGPPPG+GRCFNCG+DGHWARDC AG
Sbjct: 61 RHYLDGRDFDGSRITVEFSRGAPR---GSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAG 117
Query: 121 DWKNKCYRCGERGHIERNCQNSPKKLR 147
DWKNKCYRCGERGHIERNC+NSPKKLR
Sbjct: 118 DWKNKCYRCGERGHIERNCKNSPKKLR 144
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFARG 81
R+IVE ARG
Sbjct: 63 ERVIVEHARG 72
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ + R RD+E F YG+I +VD+K + FVEF D RDADDA Y LNG+D+ G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 72 SRIIVEFARG 81
R+IVE ARG
Sbjct: 63 ERVIVEHARG 72
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 52/70 (74%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ +VD+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFARG 81
R+IVE ARG
Sbjct: 63 ERVIVEHARG 72
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G+R+YVG L R RDLE F YGR RD+ +K + FVEF D RDADDA Y LNG+++
Sbjct: 3 GSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 62
Query: 70 DGSRIIVEFARGGPRG 85
G R++VE ARG RG
Sbjct: 63 LGERVVVEPARGTARG 78
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6
PE=2 SV=1
Length = 345
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
R+Y+GRL+ R +D++ FS YGR+ +D+K + FVEF D RDADDA Y LNG+++ G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 72 SRIIVEFARG 81
R+IVE ARG
Sbjct: 63 ERVIVEHARG 72
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1
OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
R+Y+GRL SR +D+E F YG+IRDV +K F FVEF D RDA+DA + LNG+++
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 70 DGSRIIVEFAR 80
G R+I+++++
Sbjct: 62 GGERVILDYSK 72
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVE 77
R+ +E
Sbjct: 63 CSERVTIE 70
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRD 68
RL V L+SR +DL++ + G + D K + VEF+ D +A L+G++
Sbjct: 109 RLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKE 168
Query: 69 VDGSRI 74
++G +I
Sbjct: 169 INGRKI 174
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVE 77
R+ +E
Sbjct: 63 CSERVTIE 70
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRD 68
RL V L+SR +DL++ + G + D K + VEF+ D +A L+G++
Sbjct: 109 RLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKE 168
Query: 69 VDGSRI 74
++G +I
Sbjct: 169 INGRKI 174
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
G R+++GRL R +D+E F YGRIRD+D+KR F FVEF DPRDADDA Y L+G+++
Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 70 DGSRIIVE 77
R+ +E
Sbjct: 63 CSERVTIE 70
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRD 68
RL V L+SR +DL++ + G + D K + VEF+ D +A L+G++
Sbjct: 109 RLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKE 168
Query: 69 VDGSRI 74
++G +I
Sbjct: 169 INGRKI 174
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 65/122 (53%), Gaps = 18/122 (14%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
R+Y+GRL +R RD+E F YG++ DV MK F FV+F D RDADDA + LNG+++
Sbjct: 2 VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELC 61
Query: 71 GSRIIVEFAR-----------GGPRG------PGGSREYLGRGPPPGSGRCFNCGIDGHW 113
G R+I+EF R G RG GG R++ R P S R F ID
Sbjct: 62 GERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTR-FRLVIDNLS 120
Query: 114 AR 115
R
Sbjct: 121 TR 122
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
RLY+G++ R RD+E YG+I ++ MK FAFV+F D RDA+DA + L+G+ ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 72 S--RIIVEFARGGPRG 85
S R++VE ARG PRG
Sbjct: 63 SSMRLVVEMARGKPRG 78
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 28/144 (19%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + G PR R R P AR
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPR-----RSRFDRPP----------------AR- 97
Query: 117 CKAGDWKNKCYRCGERGHIERNCQ 140
+ D ++CY CGE+GH +C
Sbjct: 98 -RPFDPNDRCYECGEKGHYAYDCH 120
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 28/143 (19%)
Query: 1 MPRYDDRYGG-TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRD 56
M RY RYGG T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRD
Sbjct: 1 MSRYG-RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 59
Query: 57 ADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARD 116
A+DA L+G+ + GSR+ VE + G PR R R P AR
Sbjct: 60 AEDAVRGLDGKVICGSRVRVELSTGMPR-----RSRFDRPP----------------AR- 97
Query: 117 CKAGDWKNKCYRCGERGHIERNC 139
+ D ++CY CGE+GH +C
Sbjct: 98 -RPFDPNDRCYECGEKGHYAYDC 119
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 5/74 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y+ +G
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75
Query: 67 RDVDGSRIIVEFAR 80
D DG R+ VEF R
Sbjct: 76 YDYDGYRLRVEFPR 89
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 5/74 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEFAR 80
D DG R+ VEF R
Sbjct: 77 YDYDGYRLRVEFPR 90
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 77 YDYDGYRLRVEF 88
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1
PE=2 SV=3
Length = 248
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 77 YDYDGYRLRVEF 88
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 77 YDYDGYRLRVEF 88
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 77 YDYDGYRLRVEF 88
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1
PE=2 SV=1
Length = 248
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 77 YDYDGYRLRVEF 88
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 77 YDYDGYRLRVEF 88
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNG 66
R+YVG L R++D+E++F +YG IRD+D+K FAFVEF DPRDA+DA Y +G
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 67 RDVDGSRIIVEF 78
D DG R+ VEF
Sbjct: 76 YDYDGYRLRVEF 87
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVD 70
T+++VG L +TR+ ++ E+F +YG + + D+ R++ FV D DA LNGR VD
Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVD 145
Query: 71 GSRIIVEFARGGPRGPGGSREYLGRGPPPGSG---RCFNCGIDGHWARDC 117
G + V+ + R P PG G +C+ CG GHW+++C
Sbjct: 146 GQPLKVQVSTSRVR------------PKPGMGDPEQCYRCGRSGHWSKEC 183
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRD 68
G +L++G L +T++ +L +F +YG + + D+ +++ FV + DA +LNG
Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64
Query: 69 VDGSRIIVEFAR 80
++ I VE A+
Sbjct: 65 LNEFAIKVEAAK 76
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 26/133 (19%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
T++YVG L + +LE FS YG +R V + R+ FAFVEF DPRDA+DA L+G+
Sbjct: 40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 68 DVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCY 127
+ GSR+ VE + G PR R R P AR + D ++CY
Sbjct: 100 VICGSRVRVELSTGMPR-----RSRFDRPP----------------AR--RPFDPNDRCY 136
Query: 128 RCGERGHIERNCQ 140
CGE+GH +C
Sbjct: 137 ECGEKGHYAYDCH 149
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 11/88 (12%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYS 63
G R+YVG L S R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y
Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 72
Query: 64 LNGRDVDGSRIIVEFAR------GGPRG 85
NG D R+ VEF R G PRG
Sbjct: 73 RNGYDYGQCRLRVEFPRTYGGRGGWPRG 100
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 9/85 (10%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYS 63
G R+YVG L + R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y
Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71
Query: 64 LNGRDVDGSRIIVEFARGGPRGPGG 88
NG D R+ VEF PR GG
Sbjct: 72 RNGYDYGQCRLRVEF----PRAYGG 92
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYS 63
G R+YVG L + R +DLE++F +YGRIR++++K FAFV F DPRDA+DA Y
Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71
Query: 64 LNGRDVDGSRIIVEFAR 80
NG D R+ VEF R
Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGR 67
+YVG L R R++E++FS+YG + +D+K +AFVEF D RDA+DA + +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 68 DVDGSRIIVEFARGG 82
D DG R+ VE A GG
Sbjct: 69 DFDGHRLRVELAHGG 83
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 68 DVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSG 102
+ G R+ VE + G R SR RGPPP G
Sbjct: 70 TLCGCRVRVELSNGEKR----SRN---RGPPPSWG 97
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 68 DVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSG 102
+ G R+ VE + G R SR RGPPP G
Sbjct: 70 TLCGCRVRVELSNGEKR----SRN---RGPPPSWG 97
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3 PE=2
SV=1
Length = 164
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
++YVG L + +LE F YG +R V + R+ FAFVEF DPRDA DA L+GR
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 68 DVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSG 102
+ G R+ VE + G R SR RGPPP G
Sbjct: 70 TLCGCRVRVELSNGEKR----SRN---RGPPPSWG 97
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDF--------AFVEFS 52
M RY R T L++ +A TR DL F RYG I DV + DF A+V+F
Sbjct: 1 MSRYT-RPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 59
Query: 53 DPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPG 87
D RDA+DA Y+LN + V G +I ++FA+G + PG
Sbjct: 60 DVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPG 94
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
R+YVG L R +R+LE+ F +G +R V + R FAF++F D RDA DA R
Sbjct: 2 ARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAI-----R 56
Query: 68 DVDGSRII-VEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCK 118
D+DG VE +R G GG Y +C+ CG GH+AR+C+
Sbjct: 57 DIDGKNGWRVELSRNASSGRGGRDRY-----GSSESKCYECGETGHFARECR 103
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3
OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR----DFAFVEFSDPRDADDARYSLNGR 67
++YVG L R +++E+IF +YGRI+ VD+K FAFVEF D RDA+DA + +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 68 DVDGSRIIVEFA 79
+ DG RI VEF
Sbjct: 70 EFDGRRIRVEFT 81
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI ++ + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGR+ +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 64 LNGRDVDGSRIIVEFA 79
LNG+ +DG I VE A
Sbjct: 69 LNGKALDGKPIKVEQA 84
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI +V + +D FAFV F P DA DA
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+++VG +++ S++L +F R GR+ + D+ +D+AFV DA A LNG++V G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 72 SRIIVEFA-RGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWA 114
RI VE + +G +GPG + + + PG+G G G A
Sbjct: 140 KRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSA 183
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 11 TRLYVGRL-ASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
+++VG + + T +L +F+ YG + + + FAFV + A A +L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 70 -DGSRIIVEFAR 80
G ++VE +R
Sbjct: 61 RPGRALVVEMSR 72
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI ++ + +D FAFV F P DA D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+++VG +++ S++L +F R GR+ + D+ +D+AFV DA A LNG++V G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 72 SRIIVEFA-RGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWA 114
RI VE + +G +GPG + + + PG+G G G A
Sbjct: 140 KRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSA 183
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 11 TRLYVGRL-ASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
+++VG + + T +L +F+ YG + + + FAFV + A A +L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 70 -DGSRIIVEFAR 80
G ++VE +R
Sbjct: 61 RPGRALVVEMSR 72
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71
+++VG +++ S++L +F R GR+ + D+ +D+AFV DA A LNG++V G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 72 SRIIVEFA-RGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWA 114
RI VE + +G +GPG + + + PG+G G G A
Sbjct: 140 KRINVELSTKGQKKGPGLAIQSGDKTKKPGAGDTAFPGTGGFSA 183
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 11 TRLYVGRL-ASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69
+++VG + + T +L +F+ YG + + + FAFV + A A +L+G ++
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 70 -DGSRIIVEFAR 80
G ++VE +R
Sbjct: 61 RPGRALVVEMSR 72
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 19/114 (16%)
Query: 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGR 67
R+YVG L R +R++E+ F +G +R V + R FAF++F D RDA+DA L+G+
Sbjct: 2 ARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGK 61
Query: 68 DVDGSRIIVEFARGGPRG---PGGSREYLGRGPPPGSGRCFNCGIDGHWARDCK 118
+G R+ + G RG GGS +C+ CG GH+AR+C+
Sbjct: 62 --NGWRVELSTKAGSGRGRDRSGGS-----------DMKCYECGEPGHFARECR 102
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYS 63
+L++G L + T + LE +F +YGRI ++ + +D FAFV F P DA D
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 64 LNGRDVDGSRIIVEFA 79
+NG+ +DG I VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,539,723
Number of Sequences: 539616
Number of extensions: 7297067
Number of successful extensions: 45718
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 1677
Number of HSP's that attempted gapping in prelim test: 24812
Number of HSP's gapped (non-prelim): 11001
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)