Query 021642
Match_columns 309
No_of_seqs 454 out of 2414
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 100.0 4.2E-28 9.2E-33 201.2 16.7 85 1-85 1-88 (195)
2 KOG4207 Predicted splicing fac 99.8 2.7E-19 5.8E-24 152.5 18.9 77 6-82 9-93 (256)
3 PLN03134 glycine-rich RNA-bind 99.7 2.8E-17 6.2E-22 136.8 13.2 79 7-85 31-117 (144)
4 KOG0109 RNA-binding protein LA 99.7 6.5E-18 1.4E-22 150.5 8.0 73 10-82 2-74 (346)
5 KOG0109 RNA-binding protein LA 99.7 5E-18 1.1E-22 151.3 6.6 104 8-120 76-179 (346)
6 KOG0105 Alternative splicing f 99.7 3.6E-17 7.8E-22 137.3 8.8 75 9-83 5-84 (241)
7 TIGR01659 sex-lethal sex-letha 99.6 4E-15 8.8E-20 140.6 8.9 112 5-133 102-221 (346)
8 PF00076 RRM_1: RNA recognitio 99.5 1.5E-14 3.3E-19 104.2 7.3 63 13-75 1-70 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.2E-14 6.9E-19 134.6 11.2 74 9-82 268-349 (352)
10 TIGR01659 sex-lethal sex-letha 99.5 1.4E-13 3.1E-18 130.0 12.5 75 8-82 191-275 (346)
11 KOG0121 Nuclear cap-binding pr 99.5 8.1E-14 1.8E-18 110.7 7.3 73 9-81 35-115 (153)
12 TIGR01648 hnRNP-R-Q heterogene 99.5 1.7E-13 3.7E-18 136.4 11.3 76 9-84 232-309 (578)
13 KOG0125 Ataxin 2-binding prote 99.5 6.5E-14 1.4E-18 127.0 7.5 77 6-82 92-174 (376)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.1E-13 2.3E-18 131.0 9.4 74 9-82 2-83 (352)
15 PLN03120 nucleic acid binding 99.5 1.6E-13 3.4E-18 123.0 9.6 72 9-81 3-79 (260)
16 PLN03121 nucleic acid binding 99.4 6E-13 1.3E-17 117.6 9.7 72 8-80 3-79 (243)
17 KOG0117 Heterogeneous nuclear 99.4 2.4E-13 5.3E-18 127.6 7.2 73 10-82 259-331 (506)
18 PLN03213 repressor of silencin 99.4 5.9E-13 1.3E-17 126.3 9.3 75 6-80 6-86 (759)
19 KOG0122 Translation initiation 99.4 5.3E-13 1.2E-17 116.8 8.3 77 6-82 185-269 (270)
20 KOG0113 U1 small nuclear ribon 99.4 6E-12 1.3E-16 113.0 15.1 75 8-82 99-181 (335)
21 KOG0148 Apoptosis-promoting RN 99.4 6.6E-13 1.4E-17 117.7 8.3 77 6-82 160-238 (321)
22 smart00362 RRM_2 RNA recogniti 99.4 2E-12 4.4E-17 92.2 8.3 66 12-77 1-72 (72)
23 PF14259 RRM_6: RNA recognitio 99.4 1.2E-12 2.6E-17 94.9 6.9 63 13-75 1-70 (70)
24 TIGR01622 SF-CC1 splicing fact 99.4 2.4E-12 5.2E-17 126.2 9.4 71 10-80 186-264 (457)
25 KOG0130 RNA-binding protein RB 99.3 1.8E-12 3.9E-17 104.0 6.8 74 9-82 71-152 (170)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 4.1E-12 9E-17 125.6 10.3 75 8-82 273-351 (481)
27 TIGR01645 half-pint poly-U bin 99.3 4.1E-12 8.8E-17 127.0 9.6 75 9-83 203-285 (612)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.3 5.2E-12 1.1E-16 125.4 9.8 74 9-82 294-375 (509)
29 KOG0114 Predicted RNA-binding 99.3 6E-12 1.3E-16 96.6 7.8 75 7-81 15-94 (124)
30 KOG0149 Predicted RNA-binding 99.3 3.5E-12 7.7E-17 111.2 7.3 72 9-81 11-90 (247)
31 TIGR01645 half-pint poly-U bin 99.3 4.9E-12 1.1E-16 126.4 9.3 73 8-80 105-185 (612)
32 TIGR01628 PABP-1234 polyadenyl 99.3 1E-11 2.2E-16 124.9 9.8 76 7-82 282-364 (562)
33 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.2E-16 87.5 8.6 67 12-78 1-74 (74)
34 TIGR01622 SF-CC1 splicing fact 99.3 1.4E-11 3E-16 120.8 9.8 74 7-81 86-167 (457)
35 KOG0111 Cyclophilin-type pepti 99.3 2.5E-12 5.4E-17 111.0 3.7 75 9-83 9-91 (298)
36 TIGR01648 hnRNP-R-Q heterogene 99.3 1.2E-11 2.7E-16 123.2 9.2 72 8-79 56-135 (578)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.8E-11 3.9E-16 121.0 9.7 73 10-82 2-78 (481)
38 TIGR01628 PABP-1234 polyadenyl 99.3 1.5E-11 3.3E-16 123.7 9.2 71 11-81 1-79 (562)
39 smart00360 RRM RNA recognition 99.2 2.7E-11 5.8E-16 85.9 7.7 63 15-77 1-71 (71)
40 KOG0131 Splicing factor 3b, su 99.2 1.1E-11 2.4E-16 104.3 6.0 75 6-80 5-87 (203)
41 COG0724 RNA-binding proteins ( 99.2 3.5E-11 7.5E-16 107.2 9.1 71 10-80 115-193 (306)
42 KOG0415 Predicted peptidyl pro 99.2 1.7E-11 3.6E-16 112.4 6.4 82 1-82 230-319 (479)
43 PF13893 RRM_5: RNA recognitio 99.2 4.3E-11 9.3E-16 83.2 6.8 53 27-79 1-56 (56)
44 KOG0117 Heterogeneous nuclear 99.2 3.5E-11 7.5E-16 113.3 8.1 75 8-82 81-164 (506)
45 KOG0106 Alternative splicing f 99.2 2.3E-11 5E-16 106.5 5.3 73 11-83 2-74 (216)
46 KOG4212 RNA-binding protein hn 99.2 8.9E-11 1.9E-15 110.2 9.4 70 12-81 46-123 (608)
47 KOG0126 Predicted RNA-binding 99.2 2.5E-12 5.4E-17 108.1 -1.1 74 8-81 33-114 (219)
48 KOG0148 Apoptosis-promoting RN 99.1 6.3E-11 1.4E-15 105.2 6.6 73 11-83 63-143 (321)
49 KOG0145 RNA-binding protein EL 99.1 1.5E-10 3.2E-15 102.4 8.0 77 6-82 37-121 (360)
50 KOG0127 Nucleolar protein fibr 99.1 1.5E-10 3.2E-15 111.4 7.5 74 10-83 117-197 (678)
51 TIGR01642 U2AF_lg U2 snRNP aux 99.0 5.2E-10 1.1E-14 111.1 9.0 71 9-80 174-258 (509)
52 KOG0145 RNA-binding protein EL 99.0 6.6E-10 1.4E-14 98.4 8.2 75 8-82 276-358 (360)
53 KOG0146 RNA-binding protein ET 99.0 2.7E-10 5.8E-15 101.1 5.1 77 6-82 281-365 (371)
54 KOG0108 mRNA cleavage and poly 99.0 6.4E-10 1.4E-14 107.3 7.5 72 11-82 19-98 (435)
55 KOG4206 Spliceosomal protein s 99.0 1.2E-09 2.5E-14 95.2 8.1 75 8-82 7-90 (221)
56 KOG0124 Polypyrimidine tract-b 99.0 2.6E-10 5.6E-15 105.0 3.8 70 10-79 113-190 (544)
57 KOG0144 RNA-binding protein CU 99.0 4.1E-10 8.9E-15 105.7 5.1 74 10-83 124-207 (510)
58 KOG4212 RNA-binding protein hn 99.0 7.2E-10 1.6E-14 104.2 6.2 70 10-79 536-608 (608)
59 KOG0147 Transcriptional coacti 99.0 6.2E-10 1.3E-14 107.4 5.1 70 12-81 280-357 (549)
60 smart00361 RRM_1 RNA recogniti 98.9 2.1E-09 4.6E-14 78.3 6.3 54 24-77 2-70 (70)
61 KOG4676 Splicing factor, argin 98.9 1.5E-09 3.3E-14 100.8 6.9 68 11-79 8-86 (479)
62 KOG0116 RasGAP SH3 binding pro 98.9 3.7E-09 8E-14 101.5 9.6 77 8-85 286-370 (419)
63 KOG0153 Predicted RNA-binding 98.9 2.1E-09 4.6E-14 98.6 7.5 74 8-81 226-302 (377)
64 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.2E-09 4.9E-14 103.7 6.9 76 10-85 405-488 (940)
65 KOG0132 RNA polymerase II C-te 98.9 2.8E-09 6.1E-14 106.3 7.6 73 10-82 421-495 (894)
66 KOG0144 RNA-binding protein CU 98.9 3.2E-09 6.9E-14 99.8 7.5 75 8-82 32-117 (510)
67 KOG0127 Nucleolar protein fibr 98.9 2.8E-09 6.1E-14 102.7 6.8 76 9-84 4-87 (678)
68 KOG0110 RNA-binding protein (R 98.9 4.8E-09 1E-13 103.9 7.7 74 9-82 514-598 (725)
69 KOG0106 Alternative splicing f 98.9 3.3E-09 7.1E-14 93.0 5.6 69 8-76 97-165 (216)
70 KOG0123 Polyadenylate-binding 98.8 1.3E-08 2.8E-13 97.1 7.8 69 12-81 78-152 (369)
71 KOG0533 RRM motif-containing p 98.8 2.1E-08 4.5E-13 89.7 7.9 74 8-81 81-161 (243)
72 KOG0124 Polypyrimidine tract-b 98.8 1.5E-08 3.3E-13 93.6 6.6 71 10-80 210-288 (544)
73 KOG4454 RNA binding protein (R 98.8 3.3E-09 7.1E-14 91.8 2.1 75 8-82 7-87 (267)
74 KOG0131 Splicing factor 3b, su 98.7 3E-08 6.4E-13 83.8 6.3 75 9-83 95-178 (203)
75 KOG1457 RNA binding protein (c 98.7 5.6E-08 1.2E-12 84.6 7.9 80 5-84 29-120 (284)
76 KOG4205 RNA-binding protein mu 98.7 1.7E-08 3.6E-13 93.7 4.8 76 7-83 3-86 (311)
77 KOG0151 Predicted splicing reg 98.7 2.9E-08 6.2E-13 98.4 6.3 78 4-81 167-256 (877)
78 KOG4208 Nucleolar RNA-binding 98.7 6.1E-08 1.3E-12 83.4 7.5 77 6-82 45-130 (214)
79 KOG0110 RNA-binding protein (R 98.6 2.3E-08 5E-13 99.1 4.6 74 8-81 611-692 (725)
80 KOG0105 Alternative splicing f 98.6 2.2E-07 4.7E-12 78.8 9.5 63 9-71 114-177 (241)
81 KOG4205 RNA-binding protein mu 98.6 1.8E-07 3.9E-12 86.9 7.8 72 10-82 97-176 (311)
82 PF08777 RRM_3: RNA binding mo 98.5 1.6E-07 3.5E-12 73.9 6.0 70 10-79 1-77 (105)
83 KOG1548 Transcription elongati 98.5 2.7E-07 5.9E-12 84.9 7.5 77 7-83 131-222 (382)
84 KOG0123 Polyadenylate-binding 98.4 5.6E-07 1.2E-11 86.0 7.6 69 11-82 2-75 (369)
85 KOG4209 Splicing factor RNPS1, 98.4 3.5E-07 7.6E-12 81.8 5.5 76 6-82 97-180 (231)
86 KOG0146 RNA-binding protein ET 98.4 3.4E-07 7.4E-12 81.6 5.2 73 9-81 18-100 (371)
87 KOG4660 Protein Mei2, essentia 98.4 2.3E-07 5E-12 90.0 4.2 68 8-75 73-143 (549)
88 PF11608 Limkain-b1: Limkain b 98.4 2.1E-06 4.5E-11 63.9 7.5 69 11-81 3-76 (90)
89 KOG1995 Conserved Zn-finger pr 98.3 3E-06 6.5E-11 78.6 8.3 78 6-83 62-155 (351)
90 KOG1457 RNA binding protein (c 98.3 6.9E-07 1.5E-11 77.9 3.7 59 11-69 211-273 (284)
91 KOG4676 Splicing factor, argin 98.2 1.5E-07 3.3E-12 87.7 -1.1 71 10-81 151-225 (479)
92 PF04059 RRM_2: RNA recognitio 98.2 9.9E-06 2.2E-10 62.6 8.1 72 11-82 2-87 (97)
93 KOG1190 Polypyrimidine tract-b 98.2 5.1E-06 1.1E-10 78.1 7.5 72 10-81 297-372 (492)
94 KOG4211 Splicing factor hnRNP- 98.0 2.6E-05 5.5E-10 75.1 8.2 72 8-81 8-85 (510)
95 KOG4206 Spliceosomal protein s 97.9 3.8E-05 8.3E-10 67.2 7.5 74 7-80 143-220 (221)
96 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.4E-05 9.6E-10 52.4 5.7 50 11-61 2-53 (53)
97 KOG0120 Splicing factor U2AF, 97.8 1.6E-05 3.6E-10 77.7 4.4 75 8-82 287-369 (500)
98 COG5175 MOT2 Transcriptional r 97.8 3.9E-05 8.5E-10 70.7 6.2 70 11-80 115-201 (480)
99 KOG0226 RNA-binding proteins [ 97.8 3.5E-05 7.7E-10 68.5 5.0 73 8-80 188-268 (290)
100 KOG1855 Predicted RNA-binding 97.8 2.6E-05 5.5E-10 73.9 4.3 68 1-68 221-310 (484)
101 KOG1456 Heterogeneous nuclear 97.7 0.00014 3E-09 68.0 8.7 75 7-81 284-362 (494)
102 KOG4211 Splicing factor hnRNP- 97.7 9.1E-05 2E-09 71.4 7.2 70 9-79 102-179 (510)
103 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.0003 6.5E-09 54.8 7.3 72 7-80 3-90 (100)
104 KOG0147 Transcriptional coacti 97.6 0.00012 2.5E-09 71.5 5.8 56 25-80 468-526 (549)
105 KOG3152 TBP-binding protein, a 97.5 4.9E-05 1.1E-09 67.7 2.7 64 10-73 74-157 (278)
106 KOG0129 Predicted RNA-binding 97.5 0.00029 6.4E-09 68.3 7.9 55 8-62 368-431 (520)
107 KOG2202 U2 snRNP splicing fact 97.5 4.8E-05 1E-09 67.8 2.1 57 25-81 83-147 (260)
108 PF08952 DUF1866: Domain of un 97.4 0.0004 8.6E-09 57.4 6.4 56 26-82 52-107 (146)
109 KOG1456 Heterogeneous nuclear 97.4 0.00052 1.1E-08 64.2 7.8 78 5-82 115-199 (494)
110 KOG1548 Transcription elongati 97.4 0.00057 1.2E-08 63.4 7.9 74 9-82 264-352 (382)
111 KOG2193 IGF-II mRNA-binding pr 97.4 0.00019 4.1E-09 68.1 4.7 71 11-81 2-75 (584)
112 KOG4210 Nuclear localization s 97.4 0.0002 4.3E-09 66.2 4.5 77 8-85 182-267 (285)
113 KOG2416 Acinus (induces apopto 97.4 0.00018 3.9E-09 70.7 4.3 75 6-80 440-520 (718)
114 KOG1190 Polypyrimidine tract-b 97.3 0.00052 1.1E-08 64.9 6.5 74 8-81 412-490 (492)
115 KOG0112 Large RNA-binding prot 97.3 0.00031 6.6E-09 72.1 5.2 76 7-82 452-531 (975)
116 KOG0120 Splicing factor U2AF, 97.0 0.0012 2.5E-08 65.0 6.3 54 27-80 426-490 (500)
117 PF03880 DbpA: DbpA RNA bindin 97.0 0.0034 7.3E-08 46.0 7.1 68 11-79 1-74 (74)
118 KOG1996 mRNA splicing factor [ 96.9 0.0021 4.5E-08 58.5 6.2 58 24-81 300-366 (378)
119 KOG4307 RNA binding protein RB 96.8 0.0033 7.2E-08 63.1 6.9 68 11-78 868-943 (944)
120 KOG4849 mRNA cleavage factor I 96.7 0.0015 3.2E-08 60.7 4.0 68 10-77 80-157 (498)
121 KOG0112 Large RNA-binding prot 96.7 0.00032 6.9E-09 72.0 -0.5 77 3-79 365-448 (975)
122 KOG0129 Predicted RNA-binding 96.7 0.0019 4E-08 62.9 4.5 52 10-62 259-324 (520)
123 KOG2314 Translation initiation 96.7 0.005 1.1E-07 60.6 7.4 71 8-78 56-140 (698)
124 COG5082 AIR1 Arginine methyltr 96.5 0.0016 3.4E-08 56.0 2.3 40 101-140 60-114 (190)
125 PF10309 DUF2414: Protein of u 96.5 0.018 3.9E-07 40.7 7.1 54 10-64 5-62 (62)
126 KOG2068 MOT2 transcription fac 96.2 0.0016 3.4E-08 60.4 0.7 71 11-81 78-162 (327)
127 KOG1365 RNA-binding protein Fu 96.2 0.0043 9.4E-08 58.4 3.5 71 10-80 280-360 (508)
128 PF00098 zf-CCHC: Zinc knuckle 96.2 0.0041 8.9E-08 32.9 1.9 16 103-118 2-17 (18)
129 KOG0119 Splicing factor 1/bran 96.1 0.0043 9.3E-08 60.2 3.3 86 46-142 206-304 (554)
130 KOG4207 Predicted splicing fac 96.1 0.31 6.6E-06 42.7 14.1 68 3-70 9-86 (256)
131 PTZ00368 universal minicircle 96.1 0.0049 1.1E-07 51.4 3.0 38 103-140 105-146 (148)
132 KOG2253 U1 snRNP complex, subu 96.0 0.0051 1.1E-07 61.5 3.1 76 3-79 33-108 (668)
133 KOG4307 RNA binding protein RB 95.9 0.0048 1E-07 62.0 2.4 71 8-78 432-510 (944)
134 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.0092 2E-07 51.3 3.6 75 7-81 4-97 (176)
135 PF15023 DUF4523: Protein of u 95.6 0.065 1.4E-06 44.1 7.4 72 7-79 83-159 (166)
136 KOG2591 c-Mpl binding protein, 95.6 0.018 3.9E-07 56.7 4.9 67 10-76 175-246 (684)
137 PTZ00368 universal minicircle 95.4 0.021 4.5E-07 47.5 4.3 39 103-141 54-95 (148)
138 PF04847 Calcipressin: Calcipr 95.3 0.046 1E-06 47.3 6.2 60 23-82 8-71 (184)
139 PF07576 BRAP2: BRCA1-associat 95.3 0.16 3.5E-06 40.2 8.6 65 7-71 9-81 (110)
140 KOG2135 Proteins containing th 95.3 0.012 2.5E-07 57.0 2.5 72 11-83 373-447 (526)
141 KOG0107 Alternative splicing f 95.1 0.14 3.1E-06 43.5 8.2 16 126-141 103-118 (195)
142 KOG1365 RNA-binding protein Fu 95.1 0.037 8.1E-07 52.3 5.1 66 10-76 161-237 (508)
143 COG5082 AIR1 Arginine methyltr 95.0 0.016 3.5E-07 49.9 2.5 41 102-142 98-139 (190)
144 KOG4285 Mitotic phosphoprotein 95.0 0.088 1.9E-06 48.4 7.3 63 10-74 197-261 (350)
145 PF08675 RNA_bind: RNA binding 95.0 0.065 1.4E-06 40.1 5.2 54 11-65 10-63 (87)
146 KOG0115 RNA-binding protein p5 94.9 0.026 5.7E-07 50.6 3.6 54 11-64 32-92 (275)
147 PF00098 zf-CCHC: Zinc knuckle 94.9 0.02 4.4E-07 30.2 1.7 17 125-141 2-18 (18)
148 KOG0128 RNA-binding protein SA 94.7 0.0028 6.1E-08 65.0 -3.5 62 9-70 666-735 (881)
149 KOG4019 Calcineurin-mediated s 94.6 0.038 8.3E-07 47.1 3.6 82 1-82 1-90 (193)
150 KOG0128 RNA-binding protein SA 94.6 0.037 7.9E-07 57.1 4.0 73 9-81 735-814 (881)
151 KOG4400 E3 ubiquitin ligase in 94.1 0.036 7.7E-07 50.6 2.7 42 102-144 144-185 (261)
152 KOG4574 RNA-binding protein (c 93.9 0.04 8.6E-07 56.8 2.7 73 13-85 301-377 (1007)
153 KOG0804 Cytoplasmic Zn-finger 93.3 0.31 6.8E-06 47.1 7.5 62 10-71 74-142 (493)
154 PF11767 SET_assoc: Histone ly 93.2 0.37 8.1E-06 34.5 6.0 56 21-77 11-66 (66)
155 KOG4660 Protein Mei2, essentia 93.1 0.11 2.5E-06 51.2 4.3 74 9-82 387-473 (549)
156 KOG2318 Uncharacterized conser 92.7 0.49 1.1E-05 47.2 8.0 70 8-77 172-301 (650)
157 PRK11634 ATP-dependent RNA hel 91.8 1.5 3.3E-05 45.2 10.8 71 10-81 486-562 (629)
158 KOG2193 IGF-II mRNA-binding pr 88.8 0.028 6.1E-07 53.7 -4.3 70 11-80 81-155 (584)
159 KOG4400 E3 ubiquitin ligase in 87.7 0.44 9.5E-06 43.5 2.8 41 102-142 119-162 (261)
160 PF13696 zf-CCHC_2: Zinc knuck 87.7 0.29 6.3E-06 29.8 1.1 21 99-119 6-26 (32)
161 KOG4210 Nuclear localization s 86.7 0.38 8.2E-06 44.6 1.8 73 9-81 87-167 (285)
162 KOG2891 Surface glycoprotein [ 85.8 0.3 6.6E-06 44.5 0.7 60 10-69 149-247 (445)
163 PF13917 zf-CCHC_3: Zinc knuck 83.6 0.69 1.5E-05 30.0 1.4 19 101-119 4-22 (42)
164 PF10567 Nab6_mRNP_bdg: RNA-re 83.4 2.1 4.5E-05 39.5 4.9 80 1-80 6-106 (309)
165 KOG1295 Nonsense-mediated deca 82.2 1.6 3.5E-05 41.6 3.9 63 8-70 5-78 (376)
166 PF14787 zf-CCHC_5: GAG-polypr 80.8 0.97 2.1E-05 28.2 1.2 19 102-120 3-21 (36)
167 KOG4483 Uncharacterized conser 80.8 4.3 9.4E-05 39.0 6.1 55 9-64 390-446 (528)
168 KOG4410 5-formyltetrahydrofola 80.8 3.7 8E-05 37.7 5.5 45 10-54 330-377 (396)
169 PRK10629 EnvZ/OmpR regulon mod 78.2 17 0.00038 29.4 8.2 71 10-80 35-109 (127)
170 smart00343 ZnF_C2HC zinc finge 74.0 1.9 4.2E-05 24.5 1.1 15 104-118 2-16 (26)
171 PF13696 zf-CCHC_2: Zinc knuck 73.7 1.6 3.5E-05 26.6 0.8 19 123-141 8-26 (32)
172 cd06405 PB1_Mekk2_3 The PB1 do 73.2 34 0.00073 25.1 7.6 50 17-66 15-65 (79)
173 PF03468 XS: XS domain; Inter 72.4 4.7 0.0001 32.1 3.5 50 12-61 10-74 (116)
174 PF00403 HMA: Heavy-metal-asso 68.2 29 0.00063 23.6 6.4 52 12-63 1-58 (62)
175 KOG2295 C2H2 Zn-finger protein 65.8 1.6 3.4E-05 43.5 -0.7 62 9-70 230-299 (648)
176 PRK14548 50S ribosomal protein 64.4 24 0.00051 26.5 5.6 51 14-64 24-81 (84)
177 COG5638 Uncharacterized conser 64.3 28 0.00062 33.7 7.3 27 46-72 260-286 (622)
178 KOG4008 rRNA processing protei 63.8 5.5 0.00012 35.6 2.4 35 9-43 39-73 (261)
179 TIGR03636 L23_arch archaeal ri 62.6 28 0.00062 25.6 5.6 52 13-64 16-74 (77)
180 cd00027 BRCT Breast Cancer Sup 60.4 29 0.00063 23.1 5.3 46 11-56 2-47 (72)
181 PF08734 GYD: GYD domain; Int 58.5 36 0.00077 25.7 5.8 40 24-63 22-66 (91)
182 smart00596 PRE_C2HC PRE_C2HC d 55.9 16 0.00034 26.4 3.2 53 25-80 2-63 (69)
183 PF14392 zf-CCHC_4: Zinc knuck 55.7 4.8 0.0001 26.8 0.5 17 102-118 32-48 (49)
184 COG5222 Uncharacterized conser 53.8 6.3 0.00014 36.4 1.1 25 95-119 170-194 (427)
185 cd04904 ACT_AAAH ACT domain of 53.8 79 0.0017 22.5 6.9 45 22-66 12-65 (74)
186 PF14893 PNMA: PNMA 53.7 17 0.00038 34.4 4.0 49 8-56 16-74 (331)
187 KOG4365 Uncharacterized conser 53.6 2.3 4.9E-05 41.3 -1.9 71 9-80 2-80 (572)
188 COG0150 PurM Phosphoribosylami 52.4 4.7 0.0001 38.1 0.0 44 24-67 275-322 (345)
189 PF09902 DUF2129: Uncharacteri 51.5 29 0.00063 25.2 4.0 39 30-69 16-54 (71)
190 CHL00123 rps6 ribosomal protei 51.4 62 0.0013 24.8 6.2 45 18-62 14-80 (97)
191 COG0724 RNA-binding proteins ( 50.9 17 0.00037 31.4 3.4 37 7-43 222-258 (306)
192 TIGR01033 DNA-binding regulato 49.4 61 0.0013 29.2 6.7 45 8-52 92-143 (238)
193 PF14111 DUF4283: Domain of un 47.9 9.9 0.00021 31.0 1.3 68 12-80 17-90 (153)
194 PF01037 AsnC_trans_reg: AsnC 47.4 93 0.002 21.5 7.5 41 23-63 11-55 (74)
195 PTZ00191 60S ribosomal protein 45.9 55 0.0012 27.2 5.3 48 14-61 85-139 (145)
196 COG5236 Uncharacterized conser 43.9 48 0.001 31.5 5.2 52 23-74 263-314 (493)
197 PRK00110 hypothetical protein; 43.9 80 0.0017 28.6 6.6 45 8-52 92-143 (245)
198 COG2608 CopZ Copper chaperone 43.2 81 0.0018 22.4 5.4 53 10-62 3-61 (71)
199 PF13721 SecD-TM1: SecD export 42.6 1.6E+02 0.0034 22.7 7.6 57 11-67 32-92 (101)
200 PF07530 PRE_C2HC: Associated 42.5 47 0.001 23.8 3.9 53 25-80 2-63 (68)
201 PRK02886 hypothetical protein; 42.3 47 0.001 25.1 4.0 39 30-69 20-58 (87)
202 COG5227 SMT3 Ubiquitin-like pr 41.3 65 0.0014 24.5 4.6 59 8-67 32-101 (103)
203 PRK02302 hypothetical protein; 40.3 52 0.0011 25.0 4.0 39 30-69 22-60 (89)
204 PF15063 TC1: Thyroid cancer p 39.4 18 0.00039 26.5 1.3 25 13-37 28-52 (79)
205 COG3254 Uncharacterized conser 38.7 94 0.002 24.3 5.3 38 24-61 26-68 (105)
206 KOG4454 RNA binding protein (R 38.5 7 0.00015 34.7 -1.1 64 9-72 79-153 (267)
207 cd04931 ACT_PAH ACT domain of 37.9 1.7E+02 0.0038 22.0 7.4 43 23-65 27-79 (90)
208 PF12829 Mhr1: Transcriptional 37.0 54 0.0012 25.0 3.7 48 18-65 20-72 (91)
209 smart00666 PB1 PB1 domain. Pho 36.9 1.6E+02 0.0034 21.1 6.8 53 13-65 12-69 (81)
210 PRK11901 hypothetical protein; 36.5 66 0.0014 30.4 4.9 56 9-68 244-308 (327)
211 PF15513 DUF4651: Domain of un 36.5 43 0.00093 23.6 2.8 19 24-42 8-26 (62)
212 PF01782 RimM: RimM N-terminal 36.3 59 0.0013 23.7 3.8 32 37-69 47-78 (84)
213 PF07237 DUF1428: Protein of u 36.2 1.1E+02 0.0023 24.0 5.3 39 26-64 24-85 (103)
214 PRK12378 hypothetical protein; 35.4 1.1E+02 0.0023 27.6 6.0 45 8-52 89-140 (235)
215 COG0079 HisC Histidinol-phosph 34.6 42 0.00092 32.0 3.5 48 9-59 145-196 (356)
216 cd04458 CSP_CDS Cold-Shock Pro 34.6 20 0.00044 24.9 1.0 48 34-81 2-54 (65)
217 COG5222 Uncharacterized conser 34.6 17 0.00036 33.8 0.7 20 122-141 175-194 (427)
218 cd04905 ACT_CM-PDT C-terminal 34.2 1.7E+02 0.0037 20.9 6.0 45 22-66 13-68 (80)
219 PF09180 ProRS-C_1: Prolyl-tRN 33.2 59 0.0013 23.1 3.2 38 24-71 1-38 (68)
220 PF15288 zf-CCHC_6: Zinc knuck 32.9 36 0.00077 21.8 1.8 18 103-120 3-22 (40)
221 cd04903 ACT_LSD C-terminal ACT 32.9 1.5E+02 0.0033 19.7 6.6 30 13-42 2-32 (71)
222 PF06804 Lipoprotein_18: NlpB/ 32.2 81 0.0018 29.4 4.9 49 9-57 197-246 (303)
223 PF04127 DFP: DNA / pantothena 32.1 98 0.0021 26.7 5.0 52 13-64 21-79 (185)
224 PRK15464 cold shock-like prote 32.0 28 0.00061 25.1 1.4 47 34-81 6-58 (70)
225 PF14026 DUF4242: Protein of u 31.9 2E+02 0.0044 20.9 7.2 56 13-69 3-71 (77)
226 KOG0314 Predicted E3 ubiquitin 31.0 1.4E+02 0.0031 29.5 6.4 38 104-141 136-176 (448)
227 TIGR02381 cspD cold shock doma 30.8 33 0.00073 24.4 1.6 48 34-81 3-55 (68)
228 KOG3580 Tight junction protein 30.7 1.9E+02 0.004 29.9 7.2 10 9-18 38-47 (1027)
229 PRK09937 stationary phase/star 30.7 34 0.00075 24.9 1.7 20 34-53 3-22 (74)
230 PRK00762 hypA hydrogenase nick 30.6 2.2E+02 0.0047 22.8 6.5 44 35-81 24-69 (124)
231 KOG4840 Predicted hydrolases o 30.3 65 0.0014 29.1 3.6 68 10-77 37-113 (299)
232 PF09869 DUF2096: Uncharacteri 30.2 1.5E+02 0.0032 25.3 5.5 46 17-64 118-163 (169)
233 PRK15463 cold shock-like prote 29.9 33 0.00071 24.7 1.4 47 34-80 6-57 (70)
234 PRK14998 cold shock-like prote 29.7 37 0.0008 24.6 1.7 20 34-53 3-22 (73)
235 PRK09507 cspE cold shock prote 29.2 36 0.00077 24.3 1.5 20 34-53 5-24 (69)
236 COG1278 CspC Cold shock protei 29.1 15 0.00033 26.3 -0.4 48 34-81 3-55 (67)
237 COG5507 Uncharacterized conser 28.9 63 0.0014 25.0 2.8 19 46-64 68-86 (117)
238 PRK10943 cold shock-like prote 28.6 37 0.0008 24.3 1.5 49 33-81 4-57 (69)
239 PF02714 DUF221: Domain of unk 28.6 54 0.0012 30.4 3.1 32 47-80 1-32 (325)
240 cd04929 ACT_TPH ACT domain of 28.5 2.3E+02 0.0049 20.4 7.2 44 23-66 13-65 (74)
241 PF00564 PB1: PB1 domain; Int 28.4 1.9E+02 0.0042 20.6 5.5 60 16-77 16-80 (84)
242 PF05036 SPOR: Sporulation rel 28.3 25 0.00054 24.6 0.6 56 10-65 4-65 (76)
243 PF07292 NID: Nmi/IFP 35 domai 27.9 63 0.0014 24.5 2.7 32 47-78 1-33 (88)
244 KOG0119 Splicing factor 1/bran 27.9 1.7E+02 0.0037 29.3 6.3 20 103-122 287-306 (554)
245 TIGR00100 hypA hydrogenase nic 27.5 2.7E+02 0.0058 21.9 6.5 45 34-81 23-69 (115)
246 PF00313 CSD: 'Cold-shock' DNA 27.3 42 0.0009 23.3 1.6 21 35-55 3-23 (66)
247 PF08544 GHMP_kinases_C: GHMP 27.2 2.3E+02 0.005 20.0 6.0 40 25-65 37-80 (85)
248 PF11411 DNA_ligase_IV: DNA li 27.0 45 0.00097 20.9 1.5 17 20-36 19-35 (36)
249 PRK12380 hydrogenase nickel in 26.7 2.3E+02 0.0051 22.2 6.0 44 35-81 24-69 (113)
250 PRK09890 cold shock protein Cs 26.7 40 0.00087 24.1 1.4 20 34-53 6-25 (70)
251 PF03439 Spt5-NGN: Early trans 26.4 1.2E+02 0.0026 22.4 4.1 33 36-68 33-68 (84)
252 PF00276 Ribosomal_L23: Riboso 26.2 1.2E+02 0.0027 22.8 4.1 30 13-42 22-53 (91)
253 COG0375 HybF Zn finger protein 26.1 3.2E+02 0.0068 21.8 6.5 53 27-81 14-69 (115)
254 COG0360 RpsF Ribosomal protein 25.8 2.3E+02 0.0049 22.5 5.6 61 18-78 9-94 (112)
255 cd04930 ACT_TH ACT domain of t 25.7 3.3E+02 0.0071 21.5 6.7 43 23-65 54-105 (115)
256 KOG0156 Cytochrome P450 CYP2 s 25.5 1.4E+02 0.003 29.9 5.5 59 14-74 36-97 (489)
257 PRK10354 RNA chaperone/anti-te 25.3 44 0.00094 23.9 1.4 20 34-53 6-25 (70)
258 COG4274 Uncharacterized conser 25.1 2.3E+02 0.0051 22.0 5.4 36 25-60 33-73 (104)
259 COG0002 ArgC Acetylglutamate s 24.8 1.3E+02 0.0029 28.7 4.9 31 11-42 247-278 (349)
260 PF12623 Hen1_L: RNA repair, l 24.6 1.2E+02 0.0026 27.2 4.3 55 10-64 118-183 (245)
261 cd01201 Neurobeachin Neurobeac 24.5 3.5E+02 0.0077 21.3 6.7 53 13-65 49-106 (108)
262 TIGR00137 gid_trmFO tRNA:m(5)U 24.3 1.7E+02 0.0036 28.9 5.7 66 7-73 267-338 (433)
263 PF00398 RrnaAD: Ribosomal RNA 24.2 83 0.0018 28.4 3.4 30 9-38 96-127 (262)
264 KOG2187 tRNA uracil-5-methyltr 24.0 62 0.0013 32.5 2.6 37 45-81 64-100 (534)
265 COG0445 GidA Flavin-dependent 24.0 1.2E+02 0.0027 30.9 4.7 54 8-61 299-354 (621)
266 KOG2560 RNA splicing factor - 23.8 18 0.00039 35.5 -1.1 24 123-146 112-135 (529)
267 smart00292 BRCT breast cancer 23.7 2.3E+02 0.005 18.9 5.6 45 9-53 4-49 (80)
268 PRK10905 cell division protein 23.7 1.4E+02 0.003 28.2 4.7 56 9-67 246-309 (328)
269 cd04880 ACT_AAAH-PDT-like ACT 23.5 2.6E+02 0.0057 19.5 6.3 45 21-65 10-65 (75)
270 COG0030 KsgA Dimethyladenosine 23.2 1.1E+02 0.0023 28.1 3.8 28 10-37 95-122 (259)
271 PRK12450 foldase protein PrsA; 23.2 1.5E+02 0.0032 27.7 4.9 43 21-69 132-176 (309)
272 COG4029 Uncharacterized protei 22.9 4.2E+02 0.009 21.5 8.1 53 10-64 5-58 (142)
273 PRK05192 tRNA uridine 5-carbox 22.5 1.5E+02 0.0032 30.7 5.0 65 7-71 298-366 (618)
274 KOG2854 Possible pfkB family c 22.4 97 0.0021 29.4 3.4 52 11-62 161-230 (343)
275 cd04879 ACT_3PGDH-like ACT_3PG 22.3 2.4E+02 0.0052 18.5 6.1 40 13-52 2-46 (71)
276 COG0217 Uncharacterized conser 21.8 3.5E+02 0.0075 24.5 6.6 45 8-52 92-143 (241)
277 cd06408 PB1_NoxR The PB1 domai 21.7 2.9E+02 0.0063 20.8 5.3 51 13-63 13-66 (86)
278 smart00195 DSPc Dual specifici 21.5 2E+02 0.0044 22.6 4.9 18 12-29 7-24 (138)
279 KOG0835 Cyclin L [General func 21.3 1.7E+02 0.0037 27.7 4.8 13 46-58 175-187 (367)
280 PF06014 DUF910: Bacterial pro 21.3 71 0.0015 22.5 1.8 18 23-40 3-20 (62)
281 PRK11230 glycolate oxidase sub 21.3 1.8E+02 0.0039 29.1 5.4 41 24-64 203-254 (499)
282 PF05711 TylF: Macrocin-O-meth 21.2 49 0.0011 30.0 1.2 57 21-77 139-211 (248)
283 PF12353 eIF3g: Eukaryotic tra 20.9 56 0.0012 26.5 1.4 21 100-121 105-125 (128)
284 KOG3116 Predicted C3H1-type Zn 20.8 24 0.00051 29.4 -0.8 21 101-121 27-47 (177)
285 PRK00453 rpsF 30S ribosomal pr 20.7 3.8E+02 0.0082 20.6 6.1 17 46-62 60-76 (108)
286 cd04883 ACT_AcuB C-terminal AC 20.7 2.9E+02 0.0062 18.8 7.7 41 23-63 14-63 (72)
287 COG1207 GlmU N-acetylglucosami 20.1 2.4E+02 0.0053 27.8 5.7 63 4-66 91-173 (460)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.2e-28 Score=201.22 Aligned_cols=85 Identities=59% Similarity=1.006 Sum_probs=81.2
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 1 ~pr~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
||+|++.+.+++||||||+..+++.||+.+|..||.|..|.|.+ +||||||++..||++|+..|||..|.|..|.|+
T Consensus 1 m~r~~~~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 1 MPRYRDRNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCcccccCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 99999999999999999999999999999999999999999865 699999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021642 78 FARGGPRG 85 (309)
Q Consensus 78 ~a~~~~~~ 85 (309)
+.+..+..
T Consensus 81 ~S~G~~r~ 88 (195)
T KOG0107|consen 81 LSTGRPRG 88 (195)
T ss_pred eecCCccc
Confidence 99987664
No 2
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.84 E-value=2.7e-19 Score=152.47 Aligned_cols=77 Identities=45% Similarity=0.708 Sum_probs=72.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
|-+++++|.|-||.+.|+.++|..+|++||.|.+|.|++ +||||.|.+..+|++||+.|||.+|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 567789999999999999999999999999999999975 499999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+|+..
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 99854
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.8e-17 Score=136.81 Aligned_cols=79 Identities=30% Similarity=0.570 Sum_probs=72.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+||++.++|++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.||+++|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021642 79 ARGGPRG 85 (309)
Q Consensus 79 a~~~~~~ 85 (309)
+...+..
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9866543
No 4
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=6.5e-18 Score=150.54 Aligned_cols=73 Identities=27% Similarity=0.612 Sum_probs=70.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..+|||||||..+++++|+.+|++||+|++|+|+++||||..++...++.||..|+|..|+|..|.|+-++.+
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999998876
No 5
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.72 E-value=5e-18 Score=151.26 Aligned_cols=104 Identities=29% Similarity=0.689 Sum_probs=92.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCCCCC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPG 87 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~~~~ 87 (309)
...++|+|+||.+.++.++|+..|++||.|++++|+++|+||.|.-.++|..||..||+++|+|+.|+|++...+-+...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999987644321
Q ss_pred CCCccCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 021642 88 GSREYLGRGPPPGSGRCFNCGIDGHWARDCKAG 120 (309)
Q Consensus 88 g~~~~~g~g~~~g~~rc~~~G~~Gh~a~dc~~~ 120 (309)
| + +..-.||.||..|||.++|+..
T Consensus 156 g----m-----gDq~~cyrcGkeghwskEcP~~ 179 (346)
T KOG0109|consen 156 G----M-----GDQSGCYRCGKEGHWSKECPVD 179 (346)
T ss_pred C----C-----CCHHHheeccccccccccCCcc
Confidence 1 1 1245699999999999999964
No 6
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.6e-17 Score=137.35 Aligned_cols=75 Identities=52% Similarity=1.014 Sum_probs=70.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
..++|||+|||.+|.+.+|++||-+||.|.+|+|.. .||||+|++..||+.||..-||..++|..|.|+|+....
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 468999999999999999999999999999999964 399999999999999999999999999999999998654
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=4e-15 Score=140.58 Aligned_cols=112 Identities=26% Similarity=0.387 Sum_probs=88.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
++....++|||+|||+++++++|+++|..||+|+.|.|++ +||||+|.++++|+.||+.||+++|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3556789999999999999999999999999999999863 59999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCccccccCCCCc
Q 021642 77 EFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERG 133 (309)
Q Consensus 77 ~~a~~~~~~~~g~~~~~g~g~~~g~~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~g 133 (309)
.++++..... ....+|.. ++..++.+.++++.+..||++.
T Consensus 182 ~~a~p~~~~~-------------~~~~lfV~----nLp~~vtee~L~~~F~~fG~V~ 221 (346)
T TIGR01659 182 SYARPGGESI-------------KDTNLYVT----NLPRTITDDQLDTIFGKYGQIV 221 (346)
T ss_pred eccccccccc-------------ccceeEEe----CCCCcccHHHHHHHHHhcCCEE
Confidence 9987532110 01224443 4445566667777777777654
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.5e-14 Score=104.23 Aligned_cols=63 Identities=38% Similarity=0.778 Sum_probs=59.4
Q ss_pred EEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
|||+|||..+++++|+++|.+||.|..+.|.. +||||+|.+.++|+.||+.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 89999999999999999999999999998864 3999999999999999999999999999874
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=3.2e-14 Score=134.59 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.+.+|||+|||+.+++++|.++|.+||.|..|.|+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999996 4699999999999999999999999999999999987
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
.+
T Consensus 348 ~~ 349 (352)
T TIGR01661 348 NK 349 (352)
T ss_pred CC
Confidence 65
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.51 E-value=1.4e-13 Score=130.04 Aligned_cols=75 Identities=31% Similarity=0.498 Sum_probs=67.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCC--Cceeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDG--SRIIVE 77 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~G--r~I~V~ 77 (309)
...++|||+||+..|+|++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.||++.|.+ +.|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3568899999999999999999999999999998863 499999999999999999999999876 678898
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+++..
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 88754
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8.1e-14 Score=110.74 Aligned_cols=73 Identities=33% Similarity=0.561 Sum_probs=68.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.++||||+||+..++|++|.+||.++|+|..|.|- .|||||+|-..++|+.||..++|+.|+.+.|.|.+.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 57999999999999999999999999999998872 3699999999999999999999999999999999876
Q ss_pred C
Q 021642 81 G 81 (309)
Q Consensus 81 ~ 81 (309)
+
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=1.7e-13 Score=136.41 Aligned_cols=76 Identities=37% Similarity=0.567 Sum_probs=71.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhc--CCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRY--GRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~--G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~ 84 (309)
...+|||+||++.+++++|+++|.+| |+|+.|.++++||||+|++.++|++||+.|||++|+|+.|+|.++++...
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 35789999999999999999999999 99999999999999999999999999999999999999999999987543
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=6.5e-14 Score=126.95 Aligned_cols=77 Identities=35% Similarity=0.606 Sum_probs=71.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
......+|+|.|||+...+.||+.+|++||.|.+|+|+ ||||||+|++.+||++|-++|||+.|+|++|+|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34566899999999999999999999999999999996 569999999999999999999999999999999988
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
...
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 753
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.1e-13 Score=131.03 Aligned_cols=74 Identities=30% Similarity=0.532 Sum_probs=69.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+|||..+++++|+++|..||+|..|.|+. +||||+|.+.++|++||+.|||..|.|+.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 468999999999999999999999999999999963 599999999999999999999999999999999987
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1.6e-13 Score=123.01 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=67.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..++|||+||++.+++++|++||..||+|..|.|. .+||||+|.++++|+.|| .|||..|.|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 35799999999999999999999999999999995 359999999999999999 6999999999999999874
No 16
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6e-13 Score=117.56 Aligned_cols=72 Identities=26% Similarity=0.397 Sum_probs=67.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..+++|||+||++.+++++|++||..||+|..|.|.. +||||+|.++++|+.|| .|+|..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3568999999999999999999999999999999976 49999999999999999 899999999999998765
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.4e-13 Score=127.57 Aligned_cols=73 Identities=36% Similarity=0.593 Sum_probs=70.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
-..|||.||+..||++.|+++|.+||.|+.|..+++||||.|.+.++|.+||+.|||++|+|..|.|.+|++.
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999974
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=5.9e-13 Score=126.31 Aligned_cols=75 Identities=33% Similarity=0.505 Sum_probs=69.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC----CeEEEEECCH--HHHHHHHHhcCccccCCCceeeeec
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR----DFAFVEFSDP--RDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~----~~afV~F~~~--~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
....+.+||||||++.|+++||..+|..||.|..|.|++ +||||+|... .++.+||..|||.+|.|+.|+|+.|
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 345678999999999999999999999999999999985 5999999987 6899999999999999999999998
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
+
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 6
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.3e-13 Score=116.80 Aligned_cols=77 Identities=34% Similarity=0.509 Sum_probs=71.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.+.++++|-|.||++++++++|++||..||.|..|.|. +|||||.|...++|++||..|||+-++...|.|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 44578999999999999999999999999999999885 4599999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 20
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=6e-12 Score=113.03 Aligned_cols=75 Identities=33% Similarity=0.606 Sum_probs=69.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.+-+||||+-|+.+++|..|+..|..||.|+.|.|+. |||||+|+++.+++.|....+|..|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4569999999999999999999999999999999864 59999999999999999999999999999999987
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 754
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.6e-13 Score=117.71 Aligned_cols=77 Identities=26% Similarity=0.494 Sum_probs=72.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
...++|+||||||+..+++++|+++|..||.|.+|.|++ +||||.|++.|.|..||..||+++|.|..+++.|-+..
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 346789999999999999999999999999999999976 59999999999999999999999999999999998754
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2e-12 Score=92.16 Aligned_cols=66 Identities=41% Similarity=0.736 Sum_probs=61.3
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+|||.|||..+++++|+++|.+||.|..+.+.. ++|||+|.+.++|+.|+..|++..|.|..|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999988863 699999999999999999999999999988873
No 23
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=1.2e-12 Score=94.89 Aligned_cols=63 Identities=40% Similarity=0.740 Sum_probs=56.8
Q ss_pred EEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
|||+|||+.+++++|.++|..||.|..+.+.. ++|||+|.+.++|+.|++.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999998853 4999999999999999999999999998874
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.35 E-value=2.4e-12 Score=126.16 Aligned_cols=71 Identities=34% Similarity=0.655 Sum_probs=67.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.++|||+||+..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||+.|.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5899999999999999999999999999999886 3599999999999999999999999999999999976
No 25
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.8e-12 Score=104.00 Aligned_cols=74 Identities=23% Similarity=0.499 Sum_probs=68.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--------eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--------~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.+..|||++|...++++||.+.|..||+|+.|.| .++||+|+|++.+.|+.||+.|||.+|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4678999999999999999999999999999887 35799999999999999999999999999999999886
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 54
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=4.1e-12 Score=125.56 Aligned_cols=75 Identities=27% Similarity=0.377 Sum_probs=69.6
Q ss_pred CCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 8 YGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 8 ~~~~~v~V~nL~~-~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..+++|||+||++ .+++++|+++|+.||.|..|.|+ ++||||+|.+.++|+.||..|||..|.|+.|.|.+++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4678999999997 69999999999999999999987 469999999999999999999999999999999998653
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=4.1e-12 Score=127.01 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=69.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+||+..+++++|+++|..||+|+.+.|. +|||||+|.+.++|..||+.||+++|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999885 3599999999999999999999999999999999988
Q ss_pred CCC
Q 021642 81 GGP 83 (309)
Q Consensus 81 ~~~ 83 (309)
..+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=5.2e-12 Score=125.38 Aligned_cols=74 Identities=27% Similarity=0.558 Sum_probs=68.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+|||..+++++|+++|..||.|..+.|+ +|||||+|.+.++|+.||+.|||+.|.|..|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999998885 3599999999999999999999999999999999986
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 53
No 29
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=6e-12 Score=96.61 Aligned_cols=75 Identities=29% Similarity=0.482 Sum_probs=68.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
...+..|||.|||..+|.+++.++|.+||.|..|.|- +|-|||.|++..+|.+|+++|+|..+++..|.|-+..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3456789999999999999999999999999999994 46999999999999999999999999999999988764
No 30
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3.5e-12 Score=111.22 Aligned_cols=72 Identities=26% Similarity=0.408 Sum_probs=64.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.-|+||||+|+|.+..+.|+.+|++||+|+++.|+ +|||||+|.|.+.|..|++.. .-.|+|++..|.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 45899999999999999999999999999999886 459999999999999999654 468999999998876
Q ss_pred C
Q 021642 81 G 81 (309)
Q Consensus 81 ~ 81 (309)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.32 E-value=4.9e-12 Score=126.44 Aligned_cols=73 Identities=30% Similarity=0.504 Sum_probs=67.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+||++.+++++|+++|.+||.|..|.|+ +|||||+|.+.++|+.||+.|||+.|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356899999999999999999999999999999984 469999999999999999999999999999999865
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.29 E-value=1e-11 Score=124.94 Aligned_cols=76 Identities=32% Similarity=0.550 Sum_probs=70.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...+++|||+||+..+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44678899999999999999999999999999999863 59999999999999999999999999999999998
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 753
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=1.9e-11 Score=87.49 Aligned_cols=67 Identities=43% Similarity=0.817 Sum_probs=62.3
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
+|+|+|||..+++++|+++|..||.|..+.+.. ++|||+|.+.++|..|++.|++..|.|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999988863 5999999999999999999999999999998864
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.27 E-value=1.4e-11 Score=120.76 Aligned_cols=74 Identities=35% Similarity=0.533 Sum_probs=67.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.....+|||+|||..+++++|+++|.+||+|..|.|++ +||||+|.+.++|++|| .|+|+.|.|..|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 34578999999999999999999999999999999963 59999999999999999 5999999999999988
Q ss_pred ccC
Q 021642 79 ARG 81 (309)
Q Consensus 79 a~~ 81 (309)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 764
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-12 Score=111.03 Aligned_cols=75 Identities=33% Similarity=0.558 Sum_probs=69.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.-.+||||+|...|++..|...|-.||.|+.|.|+ ++||||+|+..|||..||+.||+.+|.|+.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34789999999999999999999999999999985 4599999999999999999999999999999999998
Q ss_pred CCC
Q 021642 81 GGP 83 (309)
Q Consensus 81 ~~~ 83 (309)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 753
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.27 E-value=1.2e-11 Score=123.22 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=64.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccC-CCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~-Gr~I~V~~a 79 (309)
..+++|||+|||.+++|++|+++|.+||.|..|.|++ +||||+|.+.++|++||+.||+.+|. |+.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4469999999999999999999999999999999863 59999999999999999999999885 677666544
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.26 E-value=1.8e-11 Score=121.04 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=67.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHh--cCccccCCCceeeeeccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYS--LNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~--lng~~l~Gr~I~V~~a~~~ 82 (309)
+.+|||+|||+.+++++|+++|..||.|..|.|++ +||||+|++.++|+.||.. +++..|.|+.|.|+++...
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 57899999999999999999999999999999875 5999999999999999986 5789999999999998753
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.26 E-value=1.5e-11 Score=123.71 Aligned_cols=71 Identities=27% Similarity=0.549 Sum_probs=66.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.+|||+||+.+++|++|.++|.+||.|..|.|.+ +||||+|.+.++|+.||+.||+..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 4799999999999999999999999999999953 4999999999999999999999999999999998753
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=2.7e-11 Score=85.91 Aligned_cols=63 Identities=41% Similarity=0.771 Sum_probs=58.2
Q ss_pred EccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 15 VGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 15 V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
|+|||..+++++|+++|.+||.|..+.|.. +||||+|.+.++|..|+..|++..|.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999998853 499999999999999999999999999998874
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.24 E-value=1.1e-11 Score=104.27 Aligned_cols=75 Identities=31% Similarity=0.441 Sum_probs=69.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+.....||||+||+..++++.|.++|-+.|.|..+.|++ |||||+|.++++|+.||..||...|-|+.|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 455678999999999999999999999999999999864 599999999999999999999999999999998
Q ss_pred ecc
Q 021642 78 FAR 80 (309)
Q Consensus 78 ~a~ 80 (309)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 876
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=3.5e-11 Score=107.22 Aligned_cols=71 Identities=35% Similarity=0.675 Sum_probs=66.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.++|||+||+..+++++|.++|.+||.|..+.|. ++||||+|.+.++|..||+.|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999888774 3599999999999999999999999999999999975
No 42
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-11 Score=112.38 Aligned_cols=82 Identities=33% Similarity=0.598 Sum_probs=75.9
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--------eEEEEECCHHHHHHHHHhcCccccCCC
Q 021642 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYSLNGRDVDGS 72 (309)
Q Consensus 1 ~pr~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--------~afV~F~~~~~a~~Al~~lng~~l~Gr 72 (309)
||.-|-..+.+.|||..|.+-++.+||..+|..||.|..|.|+++ ||||+|++.+++++|.-+|++..|+.+
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 456667788999999999999999999999999999999999865 999999999999999999999999999
Q ss_pred ceeeeeccCC
Q 021642 73 RIIVEFARGG 82 (309)
Q Consensus 73 ~I~V~~a~~~ 82 (309)
.|+|.|...-
T Consensus 310 RIHVDFSQSV 319 (479)
T KOG0415|consen 310 RIHVDFSQSV 319 (479)
T ss_pred eEEeehhhhh
Confidence 9999998754
No 43
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=4.3e-11 Score=83.18 Aligned_cols=53 Identities=38% Similarity=0.738 Sum_probs=49.2
Q ss_pred HHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 27 LEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 27 L~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
|.++|++||+|..+.+.. ++|||+|.+.++|+.|+..|||..|.|+.|.|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 688999999999999976 79999999999999999999999999999999985
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3.5e-11 Score=113.26 Aligned_cols=75 Identities=23% Similarity=0.443 Sum_probs=68.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCcccc-CCCceeeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDV-DGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l-~Gr~I~V~~ 78 (309)
.-+|.||||.||.++.|++|..||++.|+|-++.|+. +||||+|.+.++|+.||+.||+++| .|+.|.|++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3579999999999999999999999999999999975 4999999999999999999999999 589999988
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 7654
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.3e-11 Score=106.48 Aligned_cols=73 Identities=55% Similarity=0.981 Sum_probs=69.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
..|||++|++.+.+.+|+.||..||.|..|.|..+|+||+|++.-+|..||..||+.+|.|..+.|++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998643
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.18 E-value=8.9e-11 Score=110.23 Aligned_cols=70 Identities=26% Similarity=0.496 Sum_probs=65.0
Q ss_pred EEEEccCCCCCcHHHHHHHHH-hcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 12 RLYVGRLASRTRSRDLEEIFS-RYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~-~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.|||+|||+++.|++|++||. +.|+|++|.|. +++|+|||.++|.+++|+++||.+++.|+.|+|.....
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 499999999999999999995 68999999985 45999999999999999999999999999999988765
No 47
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=2.5e-12 Score=108.08 Aligned_cols=74 Identities=31% Similarity=0.505 Sum_probs=68.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.++.-|||||||+.+||.||..+|.+||+|..|.|++ ||||+.|+++.....|++.|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4678899999999999999999999999999999975 49999999999999999999999999999999876
Q ss_pred cC
Q 021642 80 RG 81 (309)
Q Consensus 80 ~~ 81 (309)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.3e-11 Score=105.25 Aligned_cols=73 Identities=27% Similarity=0.552 Sum_probs=68.9
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..|||+.|...|+.++|++.|..||+|.+++|++ +||||.|.+.++|+.||+.|||.+|+++.|+..|+.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 4689999999999999999999999999999975 49999999999999999999999999999999999876
Q ss_pred C
Q 021642 83 P 83 (309)
Q Consensus 83 ~ 83 (309)
+
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 6
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.5e-10 Score=102.39 Aligned_cols=77 Identities=30% Similarity=0.523 Sum_probs=71.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--------eEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
-.+.-+.|+|.-||+.+|+++|+.+|...|+|+.|+++++ |+||.|.+++||++||..|||..|..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 3455688999999999999999999999999999999764 99999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
|+++.
T Consensus 117 yARPS 121 (360)
T KOG0145|consen 117 YARPS 121 (360)
T ss_pred eccCC
Confidence 99864
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.5e-10 Score=111.41 Aligned_cols=74 Identities=31% Similarity=0.611 Sum_probs=69.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
-.+|+|.|||+.|...+|+.+|.+||.|.+|.|++ |||||+|.+..+|..||+.|||.+|+|+.|.|.||-..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 67899999999999999999999999999999964 59999999999999999999999999999999999765
Q ss_pred C
Q 021642 83 P 83 (309)
Q Consensus 83 ~ 83 (309)
.
T Consensus 197 d 197 (678)
T KOG0127|consen 197 D 197 (678)
T ss_pred c
Confidence 3
No 51
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.05 E-value=5.2e-10 Score=111.06 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=60.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhc------------CCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRY------------GRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~------------G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
...+|||+|||+.|++++|++||.+| +.|..+.+. ++||||+|.+.++|..|| .|||+.|.|..|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l 252 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFL 252 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCcee
Confidence 45789999999999999999999975 245555554 469999999999999999 699999999999
Q ss_pred eeeecc
Q 021642 75 IVEFAR 80 (309)
Q Consensus 75 ~V~~a~ 80 (309)
.|....
T Consensus 253 ~v~r~~ 258 (509)
T TIGR01642 253 KIRRPH 258 (509)
T ss_pred EecCcc
Confidence 987543
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=6.6e-10 Score=98.35 Aligned_cols=75 Identities=27% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
..+..|||-||.++++|..|.++|..||.|..|+|++ +||||.+.+.++|..||..|||..|.++.|.|.|.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 4578999999999999999999999999999999975 49999999999999999999999999999999997
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 643
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=2.7e-10 Score=101.13 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=71.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--------eEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+-.++|+|||-.||.+..+.+|.++|..||.|+..+|+.+ |+||.|.++..++.||..|||+.|+-+.|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 3467899999999999999999999999999999888643 99999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+.+++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 98865
No 54
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.01 E-value=6.4e-10 Score=107.32 Aligned_cols=72 Identities=28% Similarity=0.547 Sum_probs=68.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..|||||||+++++++|.++|...|.|..+.++ +||||++|.+.++|+.|++.|||.+|.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999985 459999999999999999999999999999999998754
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.00 E-value=1.2e-09 Score=95.22 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=68.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHH----HHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEE----IFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~----~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..+.||||-||++.+..++|+. +|.+||+|..|.+. +|-|||.|.+.+.|-.|+..|+|+.|-|+.|.|+|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3445999999999999999887 99999999999884 57999999999999999999999999999999999
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
|+..
T Consensus 87 A~s~ 90 (221)
T KOG4206|consen 87 AKSD 90 (221)
T ss_pred ccCc
Confidence 9854
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=2.6e-10 Score=105.02 Aligned_cols=70 Identities=31% Similarity=0.559 Sum_probs=65.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.|+||||.|.+.+.|+.|+..|..||.|+.|+|. ++||||+|+-+|.|+.|++.|||..|+|+.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 5899999999999999999999999999999984 469999999999999999999999999999999743
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=4.1e-10 Score=105.72 Aligned_cols=74 Identities=36% Similarity=0.610 Sum_probs=67.0
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccc-cCC--Cceeeeec
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRD-VDG--SRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~-l~G--r~I~V~~a 79 (309)
+.+|||+-|+..++|.+|+++|.+||.|++|.|++ |||||.|...+.|..||+.|||+. +.| ..|.|.||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 67899999999999999999999999999999975 499999999999999999999974 555 68999999
Q ss_pred cCCC
Q 021642 80 RGGP 83 (309)
Q Consensus 80 ~~~~ 83 (309)
..+.
T Consensus 204 Dtqk 207 (510)
T KOG0144|consen 204 DTQK 207 (510)
T ss_pred ccCC
Confidence 8653
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.98 E-value=7.2e-10 Score=104.21 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=65.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.|+|||.|||.++||+.|++-|..||.|++++|+. ..+.|.|.++++|+.|+..|||..|+|+.|.|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 58899999999999999999999999999999953 37899999999999999999999999999999874
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.96 E-value=6.2e-10 Score=107.38 Aligned_cols=70 Identities=34% Similarity=0.588 Sum_probs=65.0
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.|||+||..++++++|+.+|+.||.|..|.+++ +||||+|.+.++|.+|+++|||++|.|+.|+|.+...
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 389999999999999999999999999998864 4999999999999999999999999999999887654
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=2.1e-09 Score=78.27 Aligned_cols=54 Identities=31% Similarity=0.570 Sum_probs=47.6
Q ss_pred HHHHHHHHH----hcCCeeEEE-E-e---------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 24 SRDLEEIFS----RYGRIRDVD-M-K---------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 24 e~dL~~~F~----~~G~v~~~~-i-~---------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+++|+++|. +||+|..|. | + ++||||+|.+.++|.+||..|||..|+|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999998 999999884 3 1 3599999999999999999999999999999863
No 61
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.94 E-value=1.5e-09 Score=100.75 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=56.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
..|.|.||.+.++.++|+.||..+|+|.++.|.- -.|||.|.+...+..|. +|.++.|-+..|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3899999999999999999999999999988753 28999999999999886 66667776666655443
No 62
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.94 E-value=3.7e-09 Score=101.52 Aligned_cols=77 Identities=29% Similarity=0.531 Sum_probs=66.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
....+|||.|||.+++..+|+++|..||.|+...|.. .||||+|.+.+.++.||++ +-..|++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4456699999999999999999999999998877632 4999999999999999965 478899999999998
Q ss_pred cCCCCC
Q 021642 80 RGGPRG 85 (309)
Q Consensus 80 ~~~~~~ 85 (309)
+....+
T Consensus 365 ~~~~~g 370 (419)
T KOG0116|consen 365 RPGFRG 370 (419)
T ss_pred cccccc
Confidence 875443
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.1e-09 Score=98.58 Aligned_cols=74 Identities=28% Similarity=0.505 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHH-hcCccccCCCceeeeeccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARY-SLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~-~lng~~l~Gr~I~V~~a~~ 81 (309)
..-++|||++|...+++++|.++|.+||+|..+.+.. ++|||+|.+.+.|+.|.+ .+|.+.|+|..|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4568999999999999999999999999999998864 599999999999999876 5577788999999999887
No 64
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.91 E-value=2.2e-09 Score=103.72 Aligned_cols=76 Identities=33% Similarity=0.601 Sum_probs=70.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--------eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
+.+|||.+|...+...||+.||.+||+|+-++|+.+ |+||++.+.++|.+||++|+-++|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 478999999999999999999999999999999754 999999999999999999999999999999999987
Q ss_pred CCCC
Q 021642 82 GPRG 85 (309)
Q Consensus 82 ~~~~ 85 (309)
.+.+
T Consensus 485 Ep~G 488 (940)
T KOG4661|consen 485 EPGG 488 (940)
T ss_pred Cccc
Confidence 6543
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.90 E-value=2.8e-09 Score=106.29 Aligned_cols=73 Identities=26% Similarity=0.499 Sum_probs=68.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
.+|||||+|+..|+++||..+|+.||+|..|.|+ ++||||.+....+|++||.+|....|.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 4899999999999999999999999999999986 569999999999999999999999999999999998643
No 66
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3.2e-09 Score=99.84 Aligned_cols=75 Identities=27% Similarity=0.643 Sum_probs=65.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--------eEEEEECCHHHHHHHHHhcCcc-ccCC--Cceee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------FAFVEFSDPRDADDARYSLNGR-DVDG--SRIIV 76 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--------~afV~F~~~~~a~~Al~~lng~-~l~G--r~I~V 76 (309)
.+..+|||+.||..++|.||+++|++||.|.+|.|+++ ||||.|.+.++|.+||..|++. +|.| ..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 45688999999999999999999999999999999764 9999999999999999999875 4544 56888
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.+|...
T Consensus 112 k~Ad~E 117 (510)
T KOG0144|consen 112 KYADGE 117 (510)
T ss_pred cccchh
Confidence 888754
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.8e-09 Score=102.73 Aligned_cols=76 Identities=30% Similarity=0.461 Sum_probs=70.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.+.||||++||+.++.++|.++|..+|.|..+.++ +|||||+|..++|++.||..+++..|+|+.|.|.+++
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 45899999999999999999999999999999885 4599999999999999999999999999999999998
Q ss_pred CCCC
Q 021642 81 GGPR 84 (309)
Q Consensus 81 ~~~~ 84 (309)
.+.+
T Consensus 84 ~R~r 87 (678)
T KOG0127|consen 84 KRAR 87 (678)
T ss_pred cccc
Confidence 6543
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=4.8e-09 Score=103.88 Aligned_cols=74 Identities=31% Similarity=0.579 Sum_probs=67.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-----------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
..++|||.||++.++.++|..+|..+|.|..+.|. .|||||+|.+.++|+.|+..|+|+.|+|+.|.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34559999999999999999999999999999873 2699999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
++...
T Consensus 594 ~S~~k 598 (725)
T KOG0110|consen 594 ISENK 598 (725)
T ss_pred eccCc
Confidence 99843
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=3.3e-09 Score=93.00 Aligned_cols=69 Identities=41% Similarity=0.605 Sum_probs=65.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
...+.|+|.||...+.|++|.++|.++|++.++.+..+++||+|.++++|..||..|++..|.++.|.|
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 356889999999999999999999999999888888899999999999999999999999999999999
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.3e-08 Score=97.10 Aligned_cols=69 Identities=25% Similarity=0.465 Sum_probs=64.1
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.|||.||+..++..+|.++|..||+|+.|+|.. +| ||+|++++.|.+||+.|||..+.+++|.|.+...
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 399999999999999999999999999999964 48 9999999999999999999999999999977653
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.77 E-value=2.1e-08 Score=89.72 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=66.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
...++|+|.||+..|+++||++||..||+++.+.|+. +.|-|.|...+||+.||++|+|+.|+|..|.+++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3458899999999999999999999999998888863 489999999999999999999999999999988765
Q ss_pred C
Q 021642 81 G 81 (309)
Q Consensus 81 ~ 81 (309)
.
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=93.56 Aligned_cols=71 Identities=21% Similarity=0.434 Sum_probs=65.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
-++|||..+.++++++||+.+|+.||+|.+|.+. +||+||+|.+......||..||-+.|+|..|+|..+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3789999999999999999999999999999994 5699999999999999999999999999999986543
No 73
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=3.3e-09 Score=91.84 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC------eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
....||||+||-..|+|+-|.++|.+.|.|..|.|..+ ||||+|.++..+..|++.|||..|.+..|.|.+-.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 34578999999999999999999999999999999754 999999999999999999999999999999988654
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 3
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.70 E-value=3e-08 Score=83.76 Aligned_cols=75 Identities=25% Similarity=0.425 Sum_probs=66.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~-~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.+.+|||+||.+.++|..|.++|..||.|... .|+ ++||||.|.+.+.+.+||..|||+.+..++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 45789999999999999999999999987652 332 349999999999999999999999999999999999
Q ss_pred cCCC
Q 021642 80 RGGP 83 (309)
Q Consensus 80 ~~~~ 83 (309)
....
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 8653
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.69 E-value=5.6e-08 Score=84.56 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=68.0
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---------CCeEEEEECCHHHHHHHHHhcCccccC---CC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---------RDFAFVEFSDPRDADDARYSLNGRDVD---GS 72 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---------~~~afV~F~~~~~a~~Al~~lng~~l~---Gr 72 (309)
++...-.||||.+||.+|...+|..+|..|-..+.+.|. +-+|||+|.+..+|++|+..|||..|+ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 345567899999999999999999999998666555542 139999999999999999999999996 68
Q ss_pred ceeeeeccCCCC
Q 021642 73 RIIVEFARGGPR 84 (309)
Q Consensus 73 ~I~V~~a~~~~~ 84 (309)
.|+|++++.+.+
T Consensus 109 tLhiElAKSNtK 120 (284)
T KOG1457|consen 109 TLHIELAKSNTK 120 (284)
T ss_pred eeEeeehhcCcc
Confidence 899999997654
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.69 E-value=1.7e-08 Score=93.67 Aligned_cols=76 Identities=26% Similarity=0.462 Sum_probs=66.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..+.++|||++|++.++|+.|+++|.+||+|.+|.|++ +|+||+|++.+.+..+| ...-+.|+|+.|.+..
T Consensus 3 ~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 3 SGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKR 81 (311)
T ss_pred ccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCcccccee
Confidence 34789999999999999999999999999999999987 59999999999888887 4456788999998888
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
+.+..
T Consensus 82 av~r~ 86 (311)
T KOG4205|consen 82 AVSRE 86 (311)
T ss_pred ccCcc
Confidence 77543
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.68 E-value=2.9e-08 Score=98.35 Aligned_cols=78 Identities=28% Similarity=0.436 Sum_probs=70.6
Q ss_pred CCC-CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----------CeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 4 YDD-RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----------DFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 4 ~dd-~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----------~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
+|+ ....|+|||+||++.|++++|...|..||.|..|+|+. .+|||.|-+..||+.|+..|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 444 55678999999999999999999999999999999973 399999999999999999999999999
Q ss_pred CceeeeeccC
Q 021642 72 SRIIVEFARG 81 (309)
Q Consensus 72 r~I~V~~a~~ 81 (309)
..|++.|.+.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999988853
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.67 E-value=6.1e-08 Score=83.43 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=67.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhc-CCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRY-GRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~-G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
......-+||..|+..+.+.+|..+|.+| |.|+.+.+. ++||||+|++++.|+-|.+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456778999999999999999999998 677777773 359999999999999999999999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887654
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=2.3e-08 Score=99.13 Aligned_cols=74 Identities=28% Similarity=0.652 Sum_probs=69.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|+|.|||+..+-.+|+++|..||.|..|.|+ +|||||+|-++.+|..|+++|..+-|.|+.|+++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 346899999999999999999999999999999985 459999999999999999999999999999999999
Q ss_pred cC
Q 021642 80 RG 81 (309)
Q Consensus 80 ~~ 81 (309)
+.
T Consensus 691 ~~ 692 (725)
T KOG0110|consen 691 KS 692 (725)
T ss_pred cc
Confidence 84
No 80
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=2.2e-07 Score=78.78 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC-eEEEEECCHHHHHHHHHhcCccccCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-FAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~-~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
....|+|.+||...+|+||++++.+.|.|+++++.++ +++|+|...|||+.||.+|+.+.+..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhccccccC
Confidence 4588999999999999999999999999999999875 99999999999999999999887753
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.56 E-value=1.8e-07 Score=86.88 Aligned_cols=72 Identities=26% Similarity=0.516 Sum_probs=64.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..+|||++|+..+++++|+++|.+||.|..+.|+ ++|+||.|.+++.+.+++ .+.-++|+|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 4589999999999999999999999999888875 359999999999999988 5678899999999998876
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
+
T Consensus 176 k 176 (311)
T KOG4205|consen 176 K 176 (311)
T ss_pred h
Confidence 4
No 82
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.54 E-value=1.6e-07 Score=73.93 Aligned_cols=70 Identities=29% Similarity=0.484 Sum_probs=45.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCc-----cccCCCceeeeec
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--FAFVEFSDPRDADDARYSLNG-----RDVDGSRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--~afV~F~~~~~a~~Al~~lng-----~~l~Gr~I~V~~a 79 (309)
++.|+|.+|...++.++|+++|.+||.|.+|++..| .|||-|.+.+.|+.|++++.. ..|.+..+.+.+-
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 467999999999999999999999999999999987 999999999999999886543 3566666666553
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.51 E-value=2.7e-07 Score=84.88 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=66.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEE-------eCCeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDM-------KRDFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--------~~i-------~~~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
..-++.|||.|||.++|.+++.++|.+||-|.. |+| ++|=|++.|-..+.+..||..||+..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345788999999999999999999999998744 333 35689999999999999999999999999
Q ss_pred CceeeeeccCCC
Q 021642 72 SRIIVEFARGGP 83 (309)
Q Consensus 72 r~I~V~~a~~~~ 83 (309)
..|.|+.|+-..
T Consensus 211 ~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 KKLRVERAKFQM 222 (382)
T ss_pred cEEEEehhhhhh
Confidence 999999998653
No 84
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=5.6e-07 Score=85.97 Aligned_cols=69 Identities=28% Similarity=0.454 Sum_probs=63.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..|||| +.||+.+|.++|..+|.|..+.|.+ +||||.|.++++|+.||++||...|.|+.|.|-|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 8999999999999999999998865 49999999999999999999999999999999987643
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.5e-07 Score=81.84 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=68.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
...+...|||+||...++.++|+.+|+.||.|..+.|. ++||||+|.+.+.++.||. |||..|.|..|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44577899999999999999999999999999877664 3599999999999999996 99999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+.+.+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98865
No 86
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=3.4e-07 Score=81.64 Aligned_cols=73 Identities=32% Similarity=0.603 Sum_probs=64.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccc-cCC--Cceeeee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRD-VDG--SRIIVEF 78 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~-l~G--r~I~V~~ 78 (309)
+..+||||-|...-.|+|++.+|..||+|++|.+.+ |+|||.|.+..+|+.||..|+|.. +-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999964 599999999999999999999974 444 5688998
Q ss_pred ccC
Q 021642 79 ARG 81 (309)
Q Consensus 79 a~~ 81 (309)
+..
T Consensus 98 ADT 100 (371)
T KOG0146|consen 98 ADT 100 (371)
T ss_pred ccc
Confidence 864
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=2.3e-07 Score=90.04 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=62.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
...-+|+|-|||..|++++|..+|+.||+|..|... .+..||+|-|.-+|+.|+..|++.+|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999999999999997763 46999999999999999999999999999988
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2.1e-06 Score=63.91 Aligned_cols=69 Identities=26% Similarity=0.450 Sum_probs=49.0
Q ss_pred cEEEEccCCCCCcHHH----HHHHHHhcC-CeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 11 TRLYVGRLASRTRSRD----LEEIFSRYG-RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 11 ~~v~V~nL~~~~te~d----L~~~F~~~G-~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
+.|||.|||.+.+... |++++..+| .|..| ..+.|+|.|.+++.|..|+..|+|..+.|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5799999999887654 567777776 66665 578999999999999999999999999999999999853
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.27 E-value=3e-06 Score=78.57 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEE--------eCCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDM--------KRDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--------~~i--------~~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
+...+.+|||.+|+..+++++|.++|.++|.|.. |.| .++-|.|.|++...|+.||+.+++..|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3556789999999999999999999999998843 112 245999999999999999999999999
Q ss_pred CCCceeeeeccCCC
Q 021642 70 DGSRIIVEFARGGP 83 (309)
Q Consensus 70 ~Gr~I~V~~a~~~~ 83 (309)
.+..|+|.++....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998887543
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.26 E-value=6.9e-07 Score=77.86 Aligned_cols=59 Identities=24% Similarity=0.490 Sum_probs=52.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--C--eEEEEECCHHHHHHHHHhcCcccc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--D--FAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~--~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.||||.||..+|+|++|+.+|..|-...-++|.. | +|||+|++.+.|..||..|+|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 6899999999999999999999998776666643 3 999999999999999999998766
No 91
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.23 E-value=1.5e-07 Score=87.72 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=58.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..+|+|++|...+...+|.++|..+|+|.+..+.-+ +|.|+|......+.|+ .++|.+|.-+...+.+.++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKP 225 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCc
Confidence 367999999999999999999999999999887543 8889999999999998 6688888755555544443
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.17 E-value=9.9e-06 Score=62.64 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=59.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhc--CCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccC----CCceee
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRY--GRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVD----GSRIIV 76 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~--G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~----Gr~I~V 76 (309)
|||.|.|||...+.++|.+++... |....+.|+ .|||||.|.+.+.|..-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999998653 566666554 359999999999999999999999885 355677
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777754
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.17 E-value=5.1e-06 Score=78.13 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=66.3
Q ss_pred CcEEEEccCC-CCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLA-SRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~-~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
++.|.|.||. +.||.+.|..+|.-||+|..|.|. ++.|+|.|.+...|+-|+++|+|..|.|+.|+|.+.+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6889999996 568999999999999999999996 35999999999999999999999999999999999874
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.97 E-value=2.6e-05 Score=75.09 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=59.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
....-|-+.+|||.+|++||.+||..++ |..+.+.+ +.|||+|++++++++|| ++|-..+..+-|.|..+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccCC
Confidence 3455677789999999999999999875 55565543 49999999999999999 5677888888899877654
No 95
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.91 E-value=3.8e-05 Score=67.23 Aligned_cols=74 Identities=23% Similarity=0.459 Sum_probs=64.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccC-CCceeeeecc
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFAR 80 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~-Gr~I~V~~a~ 80 (309)
...+..||+.|||..++.+.|..+|.+|.....|.++ .+.|||+|.+...+..|...|+|..|- ...|.|.+++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 5667899999999999999999999999888887775 469999999999999999999998886 7778887764
No 96
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.85 E-value=4.4e-05 Score=52.42 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=42.9
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHH
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDAR 61 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al 61 (309)
+.|-|.+.+.... ++|..+|..||+|..+.+. .++.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5788999987765 4556689999999999998 679999999999999986
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=1.6e-05 Score=77.74 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=68.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.....|||++||..+++.+|++++..||.+....++. +|||.+|.+......|+..|||..+.+..|+|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4568899999999999999999999999998877753 59999999999999999999999999999999988
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
-..
T Consensus 367 ~~g 369 (500)
T KOG0120|consen 367 IVG 369 (500)
T ss_pred hcc
Confidence 754
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=3.9e-05 Score=70.65 Aligned_cols=70 Identities=20% Similarity=0.465 Sum_probs=59.5
Q ss_pred cEEEEccCCCCCcHHH----H--HHHHHhcCCeeEEEEeCC-----------eEEEEECCHHHHHHHHHhcCccccCCCc
Q 021642 11 TRLYVGRLASRTRSRD----L--EEIFSRYGRIRDVDMKRD-----------FAFVEFSDPRDADDARYSLNGRDVDGSR 73 (309)
Q Consensus 11 ~~v~V~nL~~~~te~d----L--~~~F~~~G~v~~~~i~~~-----------~afV~F~~~~~a~~Al~~lng~~l~Gr~ 73 (309)
.-|||-+|++.+..++ | .++|.+||.|..|.|-+. -.||+|...+||..||..+||..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4578999988886655 3 589999999999988542 2399999999999999999999999999
Q ss_pred eeeeecc
Q 021642 74 IIVEFAR 80 (309)
Q Consensus 74 I~V~~a~ 80 (309)
|+..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9988765
No 99
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.76 E-value=3.5e-05 Score=68.50 Aligned_cols=73 Identities=23% Similarity=0.428 Sum_probs=63.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.+..+||.|.|..+++.+.|-..|.+|-.....++++ +|+||.|.+.+|+..|+.+|||..++.+.|.+.-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 4568999999999999999999999998776666653 59999999999999999999999999999887544
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 100
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=2.6e-05 Score=73.91 Aligned_cols=68 Identities=24% Similarity=0.451 Sum_probs=57.2
Q ss_pred CCCCCCC-CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---------------------CeEEEEECCHHHHH
Q 021642 1 MPRYDDR-YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---------------------DFAFVEFSDPRDAD 58 (309)
Q Consensus 1 ~pr~dd~-~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---------------------~~afV~F~~~~~a~ 58 (309)
+|-+++. ....+|.+.|||.+-..+.|.++|..||.|+.|.|.+ .+|||+|++.+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 3445544 6789999999999999999999999999999999842 18999999999999
Q ss_pred HHHHhcCccc
Q 021642 59 DARYSLNGRD 68 (309)
Q Consensus 59 ~Al~~lng~~ 68 (309)
+|.+.|+...
T Consensus 301 KA~e~~~~e~ 310 (484)
T KOG1855|consen 301 KARELLNPEQ 310 (484)
T ss_pred HHHHhhchhh
Confidence 9998876543
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.74 E-value=0.00014 Score=68.01 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=67.1
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~-~te~dL~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
...++.+.|-+|... ++.+.|..+|..||.|..|++++ +.|+|++.+...++.||..||+..|.|.+|.|++.+.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 346789999999865 56777999999999999999876 6999999999999999999999999999999999874
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.70 E-value=9.1e-05 Score=71.39 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~-~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
....|-+-+||+.|+++||.+||+-.-.|.. |.|+ .+.|||.|++.+.|++||.. |-..|..+-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4567888999999999999999987655544 3332 24999999999999999954 566777777877654
No 103
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.58 E-value=0.0003 Score=54.76 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEE-------------Ee--CCeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVD-------------MK--RDFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~-------------i~--~~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
....+-|.|=+.|+. ....|.++|.+||+|.+.. +. .++..|.|.+..+|++|| ..||..|.|
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g 80 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSG 80 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETT
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcC
Confidence 345677888889887 5567888999999998875 33 348999999999999999 669999998
Q ss_pred Ccee-eeecc
Q 021642 72 SRII-VEFAR 80 (309)
Q Consensus 72 r~I~-V~~a~ 80 (309)
..|. |.+.+
T Consensus 81 ~~mvGV~~~~ 90 (100)
T PF05172_consen 81 SLMVGVKPCD 90 (100)
T ss_dssp CEEEEEEE-H
T ss_pred cEEEEEEEcH
Confidence 6554 55553
No 104
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.57 E-value=0.00012 Score=71.48 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 25 RDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 25 ~dL~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
+||.+-..+||.|+.|.|.+ +|.||.|.+.++|..|+..|||.+|.|+.|.+.|-.
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 44555558999999999976 599999999999999999999999999999988765
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.54 E-value=4.9e-05 Score=67.66 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=57.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--------------------eEEEEECCHHHHHHHHHhcCcccc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--------------------FAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--------------------~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.-.|||++||+.+...-|+++|.+||+|-.|.|... .|+|+|.....|+.+.+.||++.|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988321 689999999999999999999999
Q ss_pred CCCc
Q 021642 70 DGSR 73 (309)
Q Consensus 70 ~Gr~ 73 (309)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9865
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00029 Score=68.33 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHH-hcCCeeEEEEe--------CCeEEEEECCHHHHHHHHH
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFS-RYGRIRDVDMK--------RDFAFVEFSDPRDADDARY 62 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~-~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~ 62 (309)
++..|||||+||--++.++|..+|. -||.|++|-|. +|-|=|+|.+.....+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3568999999999999999999998 69999999884 4578899999999999986
No 107
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.50 E-value=4.8e-05 Score=67.78 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=48.1
Q ss_pred HHHHHHHH-hcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 25 RDLEEIFS-RYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 25 ~dL~~~F~-~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
+||...|. +||+|..+.|- .+-+||.|..+++|++|++.||+.+|.|++|.+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444454 89999998774 35889999999999999999999999999999998764
No 108
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.42 E-value=0.0004 Score=57.38 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 26 DLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 26 dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
+|.+.|..||+|.-+.+..+.-+|+|.+-..|.+|+ .|+|..|+|+.|.|.+..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 677788899999999999999999999999999999 78999999999999998764
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.41 E-value=0.00052 Score=64.20 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=63.5
Q ss_pred CCCCCCcEEEEccC--CCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHHhcCccccC--CCceeee
Q 021642 5 DDRYGGTRLYVGRL--ASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDVD--GSRIIVE 77 (309)
Q Consensus 5 dd~~~~~~v~V~nL--~~~~te~dL~~~F~~~G~v~~~~i~~~---~afV~F~~~~~a~~Al~~lng~~l~--Gr~I~V~ 77 (309)
|....+..|.++=| -+.+|.+-|..+....|+|..|.|++. .|.|||++.+.|++|.+.|||..|- -..|+|+
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 34445566665544 467899999999999999999988764 8999999999999999999999884 3678999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
||++.
T Consensus 195 yAkP~ 199 (494)
T KOG1456|consen 195 YAKPT 199 (494)
T ss_pred ecCcc
Confidence 99864
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.41 E-value=0.00057 Score=63.37 Aligned_cols=74 Identities=20% Similarity=0.389 Sum_probs=59.8
Q ss_pred CCcEEEEccCCC----CCc-------HHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCccccCCCc
Q 021642 9 GGTRLYVGRLAS----RTR-------SRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (309)
Q Consensus 9 ~~~~v~V~nL~~----~~t-------e~dL~~~F~~~G~v~~~~i~----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~ 73 (309)
..++|+|.||-. ..+ .++|.+--.+||.|..|.|. .|.+.|.|.+.++|..||+.|+|..|+|++
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 468899999842 223 23445556789999999884 469999999999999999999999999999
Q ss_pred eeeeeccCC
Q 021642 74 IIVEFARGG 82 (309)
Q Consensus 74 I~V~~a~~~ 82 (309)
|..++..+.
T Consensus 344 l~A~i~DG~ 352 (382)
T KOG1548|consen 344 LTASIWDGK 352 (382)
T ss_pred EEEEEeCCc
Confidence 999887643
No 111
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.40 E-value=0.00019 Score=68.08 Aligned_cols=71 Identities=30% Similarity=0.499 Sum_probs=61.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHh--cCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCcc-ccCCCceeeeeccC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSR--YGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGR-DVDGSRIIVEFARG 81 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~--~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~-~l~Gr~I~V~~a~~ 81 (309)
+.|||+||.+.++..||..+|.. .+.-..+.|..+|+||++.+..+|.+|++.|+|. ++.|..+.|++.-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 57999999999999999999974 4455566677789999999999999999999996 68899999987643
No 112
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.37 E-value=0.0002 Score=66.21 Aligned_cols=77 Identities=26% Similarity=0.395 Sum_probs=66.1
Q ss_pred CCCcEEE-EccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 8 YGGTRLY-VGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~-V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....+|| |++|+..++.++|+.+|..+|.|..+.+.. +||||+|.+...+..|+.. +...+.+..|.|++
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445666 999999999999999999999999998853 4999999999999999866 78889999999999
Q ss_pred ccCCCCC
Q 021642 79 ARGGPRG 85 (309)
Q Consensus 79 a~~~~~~ 85 (309)
....+..
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8876543
No 113
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.37 E-value=0.00018 Score=70.74 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=63.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHh-cCCeeEEEE--eCCeEEEEECCHHHHHHHHHhcCcccc---CCCceeeeec
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSR-YGRIRDVDM--KRDFAFVEFSDPRDADDARYSLNGRDV---DGSRIIVEFA 79 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~-~G~v~~~~i--~~~~afV~F~~~~~a~~Al~~lng~~l---~Gr~I~V~~a 79 (309)
-....+.|||.||-.-+|..+|+.||.. .|.|..+.| ++-.|||.|.+.++|...+.+|||..+ +.+.|.|.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 4456789999999988999999999984 667766654 456999999999999999999999987 5678888887
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
.
T Consensus 520 ~ 520 (718)
T KOG2416|consen 520 R 520 (718)
T ss_pred c
Confidence 5
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.31 E-value=0.00052 Score=64.90 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=61.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEe-C--CeEEEEECCHHHHHHHHHhcCccccCCC-ceeeeeccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMK-R--DFAFVEFSDPRDADDARYSLNGRDVDGS-RIIVEFARG 81 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~-~i~-~--~~afV~F~~~~~a~~Al~~lng~~l~Gr-~I~V~~a~~ 81 (309)
.+..+|...|||..++|++|+.+|...|.+... .+. + .+|++.|++.|.|..|+..|+.+.+.+. .|+|.|.+.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 345789999999999999999999998865443 333 2 3999999999999999999999998754 889999874
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.29 E-value=0.00031 Score=72.12 Aligned_cols=76 Identities=28% Similarity=0.506 Sum_probs=69.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCccccCC--CceeeeeccCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--FAFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--~afV~F~~~~~a~~Al~~lng~~l~G--r~I~V~~a~~~ 82 (309)
-..++.|||++|..++....|...|..||.|..|++-.+ ||||.|++...++.|++.|-|.-|++ +.|.|.|+...
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 456789999999999999999999999999999999877 99999999999999999999999986 67889988753
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=0.0012 Score=65.01 Aligned_cols=54 Identities=26% Similarity=0.542 Sum_probs=46.1
Q ss_pred HHHHHHhcCCeeEEEEeCC-----------eEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 27 LEEIFSRYGRIRDVDMKRD-----------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 27 L~~~F~~~G~v~~~~i~~~-----------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
|+.-+.+||.|..|.|.+. ..||+|.+.++++.|++.|+|..|.++.|...|..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3444558999999998643 67999999999999999999999999999888765
No 117
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.01 E-value=0.0034 Score=46.04 Aligned_cols=68 Identities=26% Similarity=0.455 Sum_probs=43.2
Q ss_pred cEEEEc-cCCCCCcHHHHHHHHHhcC-----CeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 11 TRLYVG-RLASRTRSRDLEEIFSRYG-----RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 11 ~~v~V~-nL~~~~te~dL~~~F~~~G-----~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
++|||. +--..++..+|..+|...+ .|-.|+|...|+||+.... .+..++..|++..+.|+.|.|+.|
T Consensus 1 vrl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 1 VRLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CEEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 356663 3346788999999998764 4567888899999998764 688899999999999999999875
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.0021 Score=58.55 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCeeEEEEeCC---------eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 24 SRDLEEIFSRYGRIRDVDMKRD---------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i~~~---------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
++++++-.++||+|..|.|+-. -.||+|+..+.|.+|+-.|||..|+|+.+..+|...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 3466777889999999888532 579999999999999999999999999998887653
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.77 E-value=0.0033 Score=63.14 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=57.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCee-EEEE-------eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIR-DVDM-------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~-~~~i-------~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
+.|-|.|+|+.++.+||.+||..|-.+- .|.| +.+.|.|.|++.++|..|+..|++..|..++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3677899999999999999999886442 2333 345999999999999999999999999999988765
No 120
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.75 E-value=0.0015 Score=60.72 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=54.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCC--eeEEEE--------eCCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGR--IRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~--v~~~~i--------~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
-..+|||||-|.+|.+||.+.+...|- +.++++ .++||+|.......+++.++.|...+|.|+.-+|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 367999999999999999998876663 333333 25699999999999999999999999999765543
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.73 E-value=0.00032 Score=72.01 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=65.1
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC-------eEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-------FAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 3 r~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~-------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
.-||...+.+||++||+..+++.+|+..|..+|.|..|+|..- ||||.|.+...+..|+..|.+..|..-.+.
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3467788999999999999999999999999999999999542 999999999999999988888877654444
Q ss_pred eeec
Q 021642 76 VEFA 79 (309)
Q Consensus 76 V~~a 79 (309)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 4444
No 122
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0019 Score=62.92 Aligned_cols=52 Identities=19% Similarity=0.483 Sum_probs=43.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE-----------eCC---eEEEEECCHHHHHHHHH
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM-----------KRD---FAFVEFSDPRDADDARY 62 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i-----------~~~---~afV~F~~~~~a~~Al~ 62 (309)
..+||||+||++++|++|...|..||.|.- +. .+| |+|+.|+++..++..|.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 578999999999999999999999997642 22 345 99999999988776554
No 123
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.005 Score=60.56 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=55.6
Q ss_pred CCCcEEEEccCCCCCc--H----HHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccC-CCc
Q 021642 8 YGGTRLYVGRLASRTR--S----RDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVD-GSR 73 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~t--e----~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~-Gr~ 73 (309)
.-.+.|+|.|+|.--. . .-|..+|+++|+|..+.++ +||.|++|++..+|+.|+..|||+.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4457888999985332 2 2356789999999998886 469999999999999999999999886 455
Q ss_pred eeeee
Q 021642 74 IIVEF 78 (309)
Q Consensus 74 I~V~~ 78 (309)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55544
No 124
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.50 E-value=0.0016 Score=56.02 Aligned_cols=40 Identities=53% Similarity=1.256 Sum_probs=32.7
Q ss_pred CCCCccCCCCCCCCCCCC---------CC------CCccccccCCCCccccccCC
Q 021642 101 SGRCFNCGIDGHWARDCK---------AG------DWKNKCYRCGERGHIERNCQ 140 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~---------~~------~~~~~c~~cg~~gh~sr~~~ 140 (309)
...||+||..||..+||| .+ .+..+||.||+.||+.++|.
T Consensus 60 ~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~C~~~~~C~~Cg~~GH~~~dC~ 114 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNHCPKPKKCYNCGETGHLSRDCN 114 (190)
T ss_pred ccccchhcccCcccccCChhHhhhcCCCCcccccCCcccccccccccCccccccC
Confidence 456999999999999999 11 23468999999999999995
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.46 E-value=0.018 Score=40.71 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=43.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhc---CCeeEEEEeCC-eEEEEECCHHHHHHHHHhc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRY---GRIRDVDMKRD-FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~---G~v~~~~i~~~-~afV~F~~~~~a~~Al~~l 64 (309)
...|+|.+|+. ++.+||+.+|..| .....|+.+.+ -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 36799999964 7889999999998 13455666665 7889999999999999765
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.22 E-value=0.0016 Score=60.45 Aligned_cols=71 Identities=23% Similarity=0.414 Sum_probs=57.8
Q ss_pred cEEEEccCCCCCcHHH-H--HHHHHhcCCeeEEEEeCC-----------eEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 11 TRLYVGRLASRTRSRD-L--EEIFSRYGRIRDVDMKRD-----------FAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 11 ~~v~V~nL~~~~te~d-L--~~~F~~~G~v~~~~i~~~-----------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.-+||-+|+..+..++ | .++|.+||.|..|.+.++ -++|+|+..++|..||+..+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4577888887765444 4 367999999999888653 5799999999999999999999999999887
Q ss_pred eeccC
Q 021642 77 EFARG 81 (309)
Q Consensus 77 ~~a~~ 81 (309)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77654
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.19 E-value=0.0043 Score=58.41 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=57.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCC-eeE--EEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGR-IRD--VDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~-v~~--~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...|-+.+||+..+.+||.+||..|.. |.+ |.|. .|.|||+|.++++|..|..+.+.+.+..+.|.|..+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 346778999999999999999999874 444 4443 249999999999999999888888878888888765
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 128
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=96.16 E-value=0.0041 Score=32.88 Aligned_cols=16 Identities=69% Similarity=1.522 Sum_probs=11.2
Q ss_pred CCccCCCCCCCCCCCC
Q 021642 103 RCFNCGIDGHWARDCK 118 (309)
Q Consensus 103 rc~~~G~~Gh~a~dc~ 118 (309)
.||+||..||++.+|+
T Consensus 2 ~C~~C~~~GH~~~~Cp 17 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCP 17 (18)
T ss_dssp BCTTTSCSSSCGCTSS
T ss_pred cCcCCCCcCcccccCc
Confidence 4677777777777765
No 129
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=96.14 E-value=0.0043 Score=60.18 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=58.3
Q ss_pred eEEEEECCHHHHHHHHHhcCccccCCC----------cee-eeeccCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCC
Q 021642 46 FAFVEFSDPRDADDARYSLNGRDVDGS----------RII-VEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWA 114 (309)
Q Consensus 46 ~afV~F~~~~~a~~Al~~lng~~l~Gr----------~I~-V~~a~~~~~~~~g~~~~~g~g~~~g~~rc~~~G~~Gh~a 114 (309)
+|+|+-+++|.+++||+.+........ ++. .+++...+. ........|-+||..||-.
T Consensus 206 H~~Isadt~eki~~Ai~vienli~~av~~~e~~n~l~~~Qlrela~lNgt-----------~r~~d~~~c~~cg~~~H~q 274 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIENLIQSAVSVPEGQNDLKRLQLRELARLNGT-----------LRDDDNRACRNCGSTGHKQ 274 (554)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHHhCCC-----------CCccccccccccCCCcccc
Confidence 899999999999999876544332110 010 112221111 1111225799999999999
Q ss_pred CCCCCC--CCccccccCCCCccccccCCCC
Q 021642 115 RDCKAG--DWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 115 ~dc~~~--~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
.+|+.. .+.+.|..|+..+|+..+|...
T Consensus 275 ~~cp~r~~~~~n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 275 YDCPGRIPNTTNVCKICGPLGHISIDCKVN 304 (554)
T ss_pred ccCCcccccccccccccCCcccccccCCCc
Confidence 999964 3456999999999999999875
No 130
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=96.10 E-value=0.31 Score=42.68 Aligned_cols=68 Identities=21% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEeCCeEEEEECCHHHHHHHHH--hcCccccC
Q 021642 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMKRDFAFVEFSDPRDADDARY--SLNGRDVD 70 (309)
Q Consensus 3 r~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--------~~i~~~~afV~F~~~~~a~~Al~--~lng~~l~ 70 (309)
++++-..-...-|++-...-+.--|.+-+...|.|-- -.-+--+-|-+=.+.++|++||+ .|+|.+|-
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 3444433333333433333445556666666665511 00001124666778899999987 78999984
No 131
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=96.07 E-value=0.0049 Score=51.35 Aligned_cols=38 Identities=45% Similarity=1.218 Sum_probs=20.2
Q ss_pred CCccCCCCCCCCCCCCCC----CCccccccCCCCccccccCC
Q 021642 103 RCFNCGIDGHWARDCKAG----DWKNKCYRCGERGHIERNCQ 140 (309)
Q Consensus 103 rc~~~G~~Gh~a~dc~~~----~~~~~c~~cg~~gh~sr~~~ 140 (309)
.||+|+..||++.+|+.. .....||.|++.+|++.+|+
T Consensus 105 ~C~~Cg~~gH~~~~C~~~~~~~~~~~~C~~Cg~~gH~~~dCp 146 (148)
T PTZ00368 105 ACYNCGGEGHISRDCPNAGKRPGGDKTCYNCGQTGHLSRDCP 146 (148)
T ss_pred hhcccCcCCcchhcCCCccccCCCCCccccCCCcCcccccCC
Confidence 455555555555555542 11235555555555555554
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.98 E-value=0.0051 Score=61.55 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=66.1
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 3 r~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
-+....+..+|||+||...+..+.++.++..+|.|..+...+ |||.+|.....+..|+..|+-..++|..+.+...
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 344456678999999999999999999999999998877666 9999999999999999999989999988877664
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.87 E-value=0.0048 Score=62.03 Aligned_cols=71 Identities=24% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~-~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..+..|||..||..+++.++.++|...-.|++ |.|.. ..|||+|..++++..|+..-+.+.++.+.|.|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45789999999999999999999998777766 66632 3999999998888888755555556667777754
No 134
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.81 E-value=0.0092 Score=51.33 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=48.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHh-cCCe---eEEEEeCC----------eEEEEECCHHHHHHHHHhcCccccCCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSR-YGRI---RDVDMKRD----------FAFVEFSDPRDADDARYSLNGRDVDGS 72 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~-~G~v---~~~~i~~~----------~afV~F~~~~~a~~Al~~lng~~l~Gr 72 (309)
....++|.|-+||+.+||+++.+.+.. ++.. .++....+ -|||.|.+.+++...++.++|+.|...
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 445689999999999999999886665 5544 33331111 799999999999999999999877432
Q ss_pred -----ceeeeeccC
Q 021642 73 -----RIIVEFARG 81 (309)
Q Consensus 73 -----~I~V~~a~~ 81 (309)
...|++|--
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 234666653
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.57 E-value=0.065 Score=44.14 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=52.7
Q ss_pred CCCCcEEEEccCCCCCc-HHH---HHHHHHhcCCeeEEEEe-CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 7 RYGGTRLYVGRLASRTR-SRD---LEEIFSRYGRIRDVDMK-RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~t-e~d---L~~~F~~~G~v~~~~i~-~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
..+..||.|.=|..++. .+| |...+..||.|..|.+. +.-|+|.|.+...|..|+.++.. ..-|..+.+.+-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 45678888876655552 344 44556789999999886 45899999999999999988865 445566666553
No 136
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.56 E-value=0.018 Score=56.68 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=52.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHh--cCCeeEEEEe-CCeEEEEECCHHHHHHHHHhcCc--cccCCCceee
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSR--YGRIRDVDMK-RDFAFVEFSDPRDADDARYSLNG--RDVDGSRIIV 76 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~--~G~v~~~~i~-~~~afV~F~~~~~a~~Al~~lng--~~l~Gr~I~V 76 (309)
-|.|+|.-|++.+.+++|+.||.. +-.++.|.+. .+--||+|++.+||+.|...|.. ++|.|+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 477888999999999999999964 6788888774 45789999999999999765532 3566665543
No 137
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=95.42 E-value=0.021 Score=47.54 Aligned_cols=39 Identities=46% Similarity=1.193 Sum_probs=17.5
Q ss_pred CCccCCCCCCCCCCCCCCC---CccccccCCCCccccccCCC
Q 021642 103 RCFNCGIDGHWARDCKAGD---WKNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 103 rc~~~G~~Gh~a~dc~~~~---~~~~c~~cg~~gh~sr~~~~ 141 (309)
.||+|+..||++.+|+... ....|+.|+..+|+..+|+.
T Consensus 54 ~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~~GH~~~~C~~ 95 (148)
T PTZ00368 54 SCYNCGKTGHLSRECPEAPPGSGPRSCYNCGQTGHISRECPN 95 (148)
T ss_pred ccCCCCCcCcCcccCCCcccCCCCcccCcCCCCCcccccCCC
Confidence 3444444444444444321 12234555555555554443
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.31 E-value=0.046 Score=47.33 Aligned_cols=60 Identities=30% Similarity=0.423 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC--eEEEEECCHHHHHHHHHhcC--ccccCCCceeeeeccCC
Q 021642 23 RSRDLEEIFSRYGRIRDVDMKRD--FAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGG 82 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~~i~~~--~afV~F~~~~~a~~Al~~ln--g~~l~Gr~I~V~~a~~~ 82 (309)
..+.|+++|..|+.+..+.+.+. -..|.|.+.++|+.|...|+ +..|.|..|.|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988888776 56899999999999999999 99999999999988543
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.27 E-value=0.16 Score=40.23 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=46.3
Q ss_pred CCCCcEEEEcc-CCCCCcHHHHHHHHHhcC-CeeEEEEeCC------eEEEEECCHHHHHHHHHhcCccccCC
Q 021642 7 RYGGTRLYVGR-LASRTRSRDLEEIFSRYG-RIRDVDMKRD------FAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 7 ~~~~~~v~V~n-L~~~~te~dL~~~F~~~G-~v~~~~i~~~------~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
....++|.|-- +|..++.++|..+...+- .|..+.|.++ .++|.|.+.++|..-...+||+.|+.
T Consensus 9 ~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 9 DERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445555544 455555566665555554 5667788765 78899999999999999999998864
No 140
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.25 E-value=0.012 Score=56.96 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=58.3
Q ss_pred cEEEEccCCCCC-cHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 11 TRLYVGRLASRT-RSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 11 ~~v~V~nL~~~~-te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
+.|-+.-++..+ +.++|..+|.+||+|..|.|-- ..|+|+|....+|-.|. ..++..|+++.|+|.|-++.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 445555555554 5689999999999999988754 48999999999997775 779999999999999988643
No 141
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=95.08 E-value=0.14 Score=43.55 Aligned_cols=16 Identities=81% Similarity=1.869 Sum_probs=10.2
Q ss_pred cccCCCCccccccCCC
Q 021642 126 CYRCGERGHIERNCQN 141 (309)
Q Consensus 126 c~~cg~~gh~sr~~~~ 141 (309)
||+||+.||+.+.|.+
T Consensus 103 ~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 103 CYRCGERGHIGRNCKD 118 (195)
T ss_pred cccCCCcccccccccc
Confidence 6666666666666654
No 142
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.06 E-value=0.037 Score=52.29 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=45.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhc-----CCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRY-----GRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~-----G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
...|-+.+||+++++.|+.+||..- |.+.-+.|. .|-|||.|..+++|+.||.+ |-..|+-+.|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3445567999999999999999732 222222332 25999999999999999965 444454445544
No 143
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.04 E-value=0.016 Score=49.92 Aligned_cols=41 Identities=34% Similarity=0.972 Sum_probs=36.5
Q ss_pred CCCccCCCCCCCCCCC-CCCCCccccccCCCCccccccCCCC
Q 021642 102 GRCFNCGIDGHWARDC-KAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc-~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
..|++||..||++.|| |..++...|+.|...+|...+|+.-
T Consensus 98 ~~C~~Cg~~GH~~~dC~P~~~~~~~C~~C~s~~H~s~~Cp~~ 139 (190)
T COG5082 98 KKCYNCGETGHLSRDCNPSKDQQKSCFDCNSTRHSSEDCPSI 139 (190)
T ss_pred cccccccccCccccccCcccccCcceeccCCCccccccCccc
Confidence 5699999999999999 6777777899999999999999763
No 144
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.088 Score=48.37 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=49.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
.+=|.|-++++.. ...|..+|.+||+|....... ++-+|.|....+|.+|| ..||+.|+|..|
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeeccceE
Confidence 4556666776653 456778899999998876654 38999999999999999 569999988654
No 145
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.98 E-value=0.065 Score=40.11 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=41.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~ln 65 (309)
..+||+ +|..+...||.++|..||.|.--.|.-.-|||.+.+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhc
Confidence 344555 999999999999999999987666666699999999999999987765
No 146
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.91 E-value=0.026 Score=50.60 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=47.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~l 64 (309)
..|||.||...+..+.|...|..||.|....+.. +.++|+|...-.+.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 6899999999999999999999999987765543 38899999999999998766
No 147
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=94.88 E-value=0.02 Score=30.20 Aligned_cols=17 Identities=59% Similarity=1.497 Sum_probs=15.3
Q ss_pred ccccCCCCccccccCCC
Q 021642 125 KCYRCGERGHIERNCQN 141 (309)
Q Consensus 125 ~c~~cg~~gh~sr~~~~ 141 (309)
.||+|++.||++++|+.
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 69999999999999963
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.69 E-value=0.0028 Score=64.96 Aligned_cols=62 Identities=29% Similarity=0.362 Sum_probs=52.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--------eCCeEEEEECCHHHHHHHHHhcCccccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--------KRDFAFVEFSDPRDADDARYSLNGRDVD 70 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--------~~~~afV~F~~~~~a~~Al~~lng~~l~ 70 (309)
..+++||.||+..+.+.+|...|..+|.|..+.| ++|+|||+|...+.+.+||...+++.++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3478999999999999999999999988766655 2569999999999999999776666655
No 149
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=94.60 E-value=0.038 Score=47.12 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcH-----HHHHHHHHhcCCeeEEEEeCCe--EEEEECCHHHHHHHHHhcCccccCCC-
Q 021642 1 MPRYDDRYGGTRLYVGRLASRTRS-----RDLEEIFSRYGRIRDVDMKRDF--AFVEFSDPRDADDARYSLNGRDVDGS- 72 (309)
Q Consensus 1 ~pr~dd~~~~~~v~V~nL~~~~te-----~dL~~~F~~~G~v~~~~i~~~~--afV~F~~~~~a~~Al~~lng~~l~Gr- 72 (309)
|+..|-..-.++|++.+|+..+-. .....+|.+|-++..+.+.+.| .-|.|.+++.|+.|..+++++.|.|.
T Consensus 1 ~~~v~~~dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 1 MGEVDTDDLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred CCccccccccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 555665566788999999876622 3346677778777777777664 45799999999999999999999998
Q ss_pred ceeeeeccCC
Q 021642 73 RIIVEFARGG 82 (309)
Q Consensus 73 ~I~V~~a~~~ 82 (309)
.+++.++...
T Consensus 81 ~~k~yfaQ~~ 90 (193)
T KOG4019|consen 81 ELKLYFAQPG 90 (193)
T ss_pred eEEEEEccCC
Confidence 7888887754
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.55 E-value=0.037 Score=57.09 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=64.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
+...|||.|+|+..|.++|+.+|.++|.++.+.++ ++.|||.|.++.++..++..+++..+....+.|.+..+
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 34679999999999999999999999999998663 56899999999999999999999888888888888554
No 151
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.036 Score=50.63 Aligned_cols=42 Identities=38% Similarity=1.028 Sum_probs=34.8
Q ss_pred CCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 144 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~~~ 144 (309)
.-||.||..|||..+|++. ....||.|+..+|...+|+....
T Consensus 144 ~~Cy~Cg~~GH~s~~C~~~-~~~~c~~c~~~~h~~~~C~~~~~ 185 (261)
T KOG4400|consen 144 AKCYSCGEQGHISDDCPEN-KGGTCFRCGKVGHGSRDCPSKQK 185 (261)
T ss_pred CccCCCCcCCcchhhCCCC-CCCccccCCCcceecccCCcccc
Confidence 3499999999999999976 45679999999999999986543
No 152
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.90 E-value=0.04 Score=56.81 Aligned_cols=73 Identities=30% Similarity=0.323 Sum_probs=60.4
Q ss_pred EEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCcccc--CCCceeeeeccCCCCC
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD--FAFVEFSDPRDADDARYSLNGRDV--DGSRIIVEFARGGPRG 85 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~--~afV~F~~~~~a~~Al~~lng~~l--~Gr~I~V~~a~~~~~~ 85 (309)
.++.|..-..+...|..+|.+||.|..+...++ .|.|+|...+.|..|++.|+|.++ .|-..+|.+++..+..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 334444556667788999999999999998775 899999999999999999999986 5788999999876543
No 153
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.30 E-value=0.31 Score=47.14 Aligned_cols=62 Identities=26% Similarity=0.430 Sum_probs=55.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeCC------eEEEEECCHHHHHHHHHhcCccccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKRD------FAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~~~------~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
++.|+|-.+|..++..||..|+..|- .|..+.|+++ .++|.|.+.++|....+.+||..|+-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998764 6788888765 78899999999999999999999865
No 154
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.15 E-value=0.37 Score=34.50 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 21 RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 21 ~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.++-+||+..|.+|+- ..|...+.--||.|.+..+|+.+....||+.+.+..|.++
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 5678999999999873 3344444455899999999999999999998887776653
No 155
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.07 E-value=0.11 Score=51.22 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=48.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHH-hcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccC---C-Ccee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFS-RYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVD---G-SRII 75 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~-~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~---G-r~I~ 75 (309)
.-+++.|.|++...|...|.+..+ ..|....+.++ .|||||.|.+.+++..+.+++||+.++ + +...
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 345666666666555555444432 25555555553 259999999999999999999998653 3 3345
Q ss_pred eeeccCC
Q 021642 76 VEFARGG 82 (309)
Q Consensus 76 V~~a~~~ 82 (309)
|.||+-+
T Consensus 467 itYArIQ 473 (549)
T KOG4660|consen 467 ITYARIQ 473 (549)
T ss_pred eehhhhh
Confidence 6666543
No 156
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.49 Score=47.18 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=56.2
Q ss_pred CCCcEEEEccCCCC-CcHHHHHHHHHhc----CCeeEEEEe----------------C----------------------
Q 021642 8 YGGTRLYVGRLASR-TRSRDLEEIFSRY----GRIRDVDMK----------------R---------------------- 44 (309)
Q Consensus 8 ~~~~~v~V~nL~~~-~te~dL~~~F~~~----G~v~~~~i~----------------~---------------------- 44 (309)
..+.+|-|.||.|. |...||..+|..| |.|..|.|- .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45688999999985 6788999999876 578887761 0
Q ss_pred ------------C-----eEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 45 ------------D-----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 45 ------------~-----~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+ ||+|+|.+.+.|......++|++|....+.|.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 0 89999999999999999999999976544443
No 157
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.82 E-value=1.5 Score=45.18 Aligned_cols=71 Identities=6% Similarity=0.072 Sum_probs=54.7
Q ss_pred CcEEEEc-cCCCCCcHHHHHHHHHhcCCe-----eEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVG-RLASRTRSRDLEEIFSRYGRI-----RDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~-nL~~~~te~dL~~~F~~~G~v-----~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..++||. +-...++..+|..++..-+.| -.|+|...|.||+... +.+...+..|++..+.|+.|.|+.++.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 3455553 234678899999999876644 5577788899999875 447788889999999999999998753
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.83 E-value=0.028 Score=53.69 Aligned_cols=70 Identities=14% Similarity=0.354 Sum_probs=59.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC-----eEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~-----~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..|.|.||++...|+.|..|+.+||.|..|....- ..-|+|...+.+..||++|+|..|....++|.|--
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 45788999999999999999999999988876432 34567888899999999999999999998887753
No 159
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.71 E-value=0.44 Score=43.47 Aligned_cols=41 Identities=41% Similarity=0.996 Sum_probs=30.4
Q ss_pred CCCccCCCCCCCC-CCCCCCCCc--cccccCCCCccccccCCCC
Q 021642 102 GRCFNCGIDGHWA-RDCKAGDWK--NKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 102 ~rc~~~G~~Gh~a-~dc~~~~~~--~~c~~cg~~gh~sr~~~~~ 142 (309)
..||.|+..||+. .++...+.. ..||.||+.||+..+|+..
T Consensus 119 ~~~~~c~~~gh~~~~~~~~~~~~~~~~Cy~Cg~~GH~s~~C~~~ 162 (261)
T KOG4400|consen 119 TSCYSCGKTGHRGCPDADPVDGPKPAKCYSCGEQGHISDDCPEN 162 (261)
T ss_pred ceeeccCCCccccCcccccccCCCCCccCCCCcCCcchhhCCCC
Confidence 3578888888888 444433322 4699999999999999864
No 160
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=87.67 E-value=0.29 Score=29.79 Aligned_cols=21 Identities=43% Similarity=1.149 Sum_probs=14.7
Q ss_pred CCCCCCccCCCCCCCCCCCCC
Q 021642 99 PGSGRCFNCGIDGHWARDCKA 119 (309)
Q Consensus 99 ~g~~rc~~~G~~Gh~a~dc~~ 119 (309)
+....|+.|+..|||-.||+.
T Consensus 6 P~~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 6 PPGYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCCCEeecCCCCCccHhHCCC
Confidence 344567777777777777776
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.71 E-value=0.38 Score=44.57 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..+++||+++.+.+.+.++..+|..+|.+..+.+. +++++|.|...+.+..||+..-...+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 56899999999999999899999999977666552 4599999999999999995443346666665555544
Q ss_pred C
Q 021642 81 G 81 (309)
Q Consensus 81 ~ 81 (309)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 162
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.83 E-value=0.3 Score=44.47 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=41.8
Q ss_pred CcEEEEccCCCC------------CcHHHHHHHHHhcCCeeEEEEeC------------------C---------eEEEE
Q 021642 10 GTRLYVGRLASR------------TRSRDLEEIFSRYGRIRDVDMKR------------------D---------FAFVE 50 (309)
Q Consensus 10 ~~~v~V~nL~~~------------~te~dL~~~F~~~G~v~~~~i~~------------------~---------~afV~ 50 (309)
.-|||+.+||-. -+++-|...|..||+|..|+|+. + .|||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888888742 25677999999999999998841 1 24566
Q ss_pred ECCHHHHHHHHHhcCcccc
Q 021642 51 FSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 51 F~~~~~a~~Al~~lng~~l 69 (309)
|...-....|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666667777766554
No 163
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=83.61 E-value=0.69 Score=30.02 Aligned_cols=19 Identities=42% Similarity=1.165 Sum_probs=14.2
Q ss_pred CCCCccCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKA 119 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~ 119 (309)
...|.+|+..|||..+|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3568888888888888874
No 164
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.41 E-value=2.1 Score=39.45 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---------------eEEEEECCHHHHHHH----H
Q 021642 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---------------FAFVEFSDPRDADDA----R 61 (309)
Q Consensus 1 ~pr~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~---------------~afV~F~~~~~a~~A----l 61 (309)
+|.-||.+-...|.+.||...++--.+...|.+||.|+.|.++.+ -..+-|-+.+.|..- |
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999753 467888887776653 3
Q ss_pred HhcCc--cccCCCceeeeecc
Q 021642 62 YSLNG--RDVDGSRIIVEFAR 80 (309)
Q Consensus 62 ~~lng--~~l~Gr~I~V~~a~ 80 (309)
+.|.. +.|....|.|.|..
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEE
Confidence 33332 23556667666554
No 165
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=82.24 E-value=1.6 Score=41.56 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=48.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeC----------CeEEEEECCHHHHHHHHHhcCccccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKR----------DFAFVEFSDPRDADDARYSLNGRDVD 70 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~~----------~~afV~F~~~~~a~~Al~~lng~~l~ 70 (309)
..-+.|.|-+||...++++|.+.+..|- .|.+..+.. .+|||.|..++++..-...++|++|.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4457889999999999999888777654 444444432 38899999999998888889998763
No 166
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=80.84 E-value=0.97 Score=28.16 Aligned_cols=19 Identities=42% Similarity=1.097 Sum_probs=11.9
Q ss_pred CCCccCCCCCCCCCCCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAG 120 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~ 120 (309)
..|+.|+...||+.+|...
T Consensus 3 ~~CprC~kg~Hwa~~C~sk 21 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECRSK 21 (36)
T ss_dssp -C-TTTSSSCS-TTT---T
T ss_pred ccCcccCCCcchhhhhhhh
Confidence 4699999999999999864
No 167
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.79 E-value=4.3 Score=38.98 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEEeC-CeEEEEECCHHHHHHHHHhc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDMKR-DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~-v~~~~i~~-~~afV~F~~~~~a~~Al~~l 64 (309)
=.+.|-|-++|.....+||..+|..|++ -..|.++- -.||..|.....|..|| .|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHh-hc
Confidence 3477889999999999999999999974 23344433 38999999999999998 44
No 168
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.76 E-value=3.7 Score=37.74 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=35.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCe-eEEEE--eCCeEEEEECCH
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRI-RDVDM--KRDFAFVEFSDP 54 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v-~~~~i--~~~~afV~F~~~ 54 (309)
.+-|||+||+.++...||+..+.+.+.+ ..+.+ +.+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 4779999999999999999999987744 33333 346899999864
No 169
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=78.16 E-value=17 Score=29.43 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=52.9
Q ss_pred CcEEEEccCCCC---CcHHHHHHHHHhcC-CeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 10 GTRLYVGRLASR---TRSRDLEEIFSRYG-RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 10 ~~~v~V~nL~~~---~te~dL~~~F~~~G-~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
...|.|...... .+...|.+++.+-| .++.+....+-..|.|.+.++-.+|.+.|....-++..|.+.++.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 356777766333 46678889998888 778888888899999999999999888776555455566666655
No 170
>smart00343 ZnF_C2HC zinc finger.
Probab=73.97 E-value=1.9 Score=24.54 Aligned_cols=15 Identities=67% Similarity=1.610 Sum_probs=12.0
Q ss_pred CccCCCCCCCCCCCC
Q 021642 104 CFNCGIDGHWARDCK 118 (309)
Q Consensus 104 c~~~G~~Gh~a~dc~ 118 (309)
|+.||..||++.+|+
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 777888888888876
No 171
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=73.71 E-value=1.6 Score=26.57 Aligned_cols=19 Identities=37% Similarity=0.980 Sum_probs=17.4
Q ss_pred ccccccCCCCccccccCCC
Q 021642 123 KNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 123 ~~~c~~cg~~gh~sr~~~~ 141 (309)
...|+.|+..||++.+|+.
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCEeecCCCCCccHhHCCC
Confidence 4689999999999999986
No 172
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=73.23 E-value=34 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=41.1
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCc
Q 021642 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNG 66 (309)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng 66 (309)
.++.-+.-+||+.-. ..||.-.++....+.-.|-..+.+|..+||+.++.
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~eL~iPl~~Q~DLDkAie~ld~ 65 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNNELLIPLKNQEDLDRAIELLDR 65 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecccEEEeccCHHHHHHHHHHHcc
Confidence 466667777776555 57999988888888888999999999999998876
No 173
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.39 E-value=4.7 Score=32.15 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=25.5
Q ss_pred EEEEccCCCC---------CcHHHHHHHHHhcCCeeEEEE-----eCCeEEEEECC-HHHHHHHH
Q 021642 12 RLYVGRLASR---------TRSRDLEEIFSRYGRIRDVDM-----KRDFAFVEFSD-PRDADDAR 61 (309)
Q Consensus 12 ~v~V~nL~~~---------~te~dL~~~F~~~G~v~~~~i-----~~~~afV~F~~-~~~a~~Al 61 (309)
+++|.|++.. ++.++|++.|..|..++-.-+ +.++++|+|.. ..-...|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 5667777543 356789999999987653333 23499999985 44455555
No 174
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=68.24 E-value=29 Score=23.55 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=39.8
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCH----HHHHHHHHh
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDP----RDADDARYS 63 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~----~~a~~Al~~ 63 (309)
+|.|.||.-......|+..+...-.|..+.+. .+.+.|+|... +++.++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 57888888777788899999999888887774 46888888744 566666655
No 175
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.79 E-value=1.6 Score=43.52 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVD 70 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~ 70 (309)
..++|||.||.++++-.+|..+...+-.+..+.+.. .+++|+|.--.++..|+.+||+..|.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 357899999999999999999988876665555432 38889999877788888788877654
No 176
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.37 E-value=24 Score=26.51 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=36.6
Q ss_pred EEccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHhc
Q 021642 14 YVGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 14 ~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al~~l 64 (309)
|+--++..++..+|+++++. || .|..|... .+ -|||.|...++|.+....|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33346778899999999987 55 56665543 23 7999999888887765443
No 177
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=64.27 E-value=28 Score=33.70 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.4
Q ss_pred eEEEEECCHHHHHHHHHhcCccccCCC
Q 021642 46 FAFVEFSDPRDADDARYSLNGRDVDGS 72 (309)
Q Consensus 46 ~afV~F~~~~~a~~Al~~lng~~l~Gr 72 (309)
||+|+|.+.+.++......+|+++...
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccc
Confidence 788899988888888888888887653
No 178
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=63.79 E-value=5.5 Score=35.63 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK 43 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~ 43 (309)
..-+||+-|||..++++.|..+..++|.+..+.+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 44689999999999999999999999977766553
No 179
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.61 E-value=28 Score=25.61 Aligned_cols=52 Identities=13% Similarity=0.290 Sum_probs=36.6
Q ss_pred EEEccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHhc
Q 021642 13 LYVGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al~~l 64 (309)
-|+-.++...+..+|+.++++ |+ +|..|..+ .+ -|||.+...+.|.+.-.+|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 444557788999999999987 55 55555543 22 7999998877777664443
No 180
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=60.43 E-value=29 Score=23.12 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=32.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHH
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRD 56 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~ 56 (309)
..+||.+.......++|.+++..+|......+....-+|.+.+.+.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~ 47 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAG 47 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCC
Confidence 5678887766778899999999998754444444555555555444
No 181
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=58.52 E-value=36 Score=25.73 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcC-CeeEEEEeCC----eEEEEECCHHHHHHHHHh
Q 021642 24 SRDLEEIFSRYG-RIRDVDMKRD----FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 24 e~dL~~~F~~~G-~v~~~~i~~~----~afV~F~~~~~a~~Al~~ 63 (309)
++.++++++++| +|..+.+..| +.++++.+.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHH
Confidence 456778888876 8888888766 677899998887776533
No 182
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=55.89 E-value=16 Score=26.37 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHHHHHHHhcC-CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 25 RDLEEIFSRYG-RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 25 ~dL~~~F~~~G-~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.+|++.|..+| .|.++..+. +.-||+.....+... .|+=+.|+|..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 777776543 266787776554444 455577888888888654
No 183
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=55.70 E-value=4.8 Score=26.77 Aligned_cols=17 Identities=41% Similarity=1.032 Sum_probs=15.1
Q ss_pred CCCccCCCCCCCCCCCC
Q 021642 102 GRCFNCGIDGHWARDCK 118 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~ 118 (309)
.-|+.||..||...+|+
T Consensus 32 ~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 32 RFCFHCGRIGHSDKECP 48 (49)
T ss_pred hhhcCCCCcCcCHhHcC
Confidence 45999999999999986
No 184
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.82 E-value=6.3 Score=36.43 Aligned_cols=25 Identities=40% Similarity=1.193 Sum_probs=19.2
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCC
Q 021642 95 RGPPPGSGRCFNCGIDGHWARDCKA 119 (309)
Q Consensus 95 ~g~~~g~~rc~~~G~~Gh~a~dc~~ 119 (309)
.++++.+.-||.||..|||-..|+.
T Consensus 170 ~kppPpgY~CyRCGqkgHwIqnCpT 194 (427)
T COG5222 170 NKPPPPGYVCYRCGQKGHWIQNCPT 194 (427)
T ss_pred CCCCCCceeEEecCCCCchhhcCCC
Confidence 3455556679999999999988884
No 185
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=53.77 E-value=79 Score=22.55 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhcC-CeeEEEEe--C----C-eEEEEEC-CHHHHHHHHHhcCc
Q 021642 22 TRSRDLEEIFSRYG-RIRDVDMK--R----D-FAFVEFS-DPRDADDARYSLNG 66 (309)
Q Consensus 22 ~te~dL~~~F~~~G-~v~~~~i~--~----~-~afV~F~-~~~~a~~Al~~lng 66 (309)
..-.++...|..+| .++.+.-. + . +-||+|+ +.+++++||+.|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34667788888887 55555431 1 1 4467777 55566777777654
No 186
>PF14893 PNMA: PNMA
Probab=53.65 E-value=17 Score=34.39 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHh-cCCeeEEEEe-----C----CeEEEEECCHHH
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSR-YGRIRDVDMK-----R----DFAFVEFSDPRD 56 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~-~G~v~~~~i~-----~----~~afV~F~~~~~ 56 (309)
+.-..|.|.+||.+|++++|++.+.. +-.+-...|. + ..|+|+|.+.-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 34567899999999999999888764 2222222221 1 277888876444
No 187
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.63 E-value=2.3 Score=41.32 Aligned_cols=71 Identities=7% Similarity=-0.074 Sum_probs=52.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---C-----eEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---D-----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---~-----~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
+.++.|+..|+..+++.+|.-+|..||.|..+++.. + .+||+... +++..+|..|.-..+.|..+.|.++.
T Consensus 2 gs~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 2 GSMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred cchhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346678889999999999999999999998887743 2 56666543 45666666665566777778877765
No 188
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=52.37 E-value=4.7 Score=38.06 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCcc
Q 021642 24 SRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i~----~~~afV~F~~~~~a~~Al~~lng~ 67 (309)
...|.+++.+.|.|..-.|. .+.+||.+..+++++++++.|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 57888999999988776553 368899999999999999988765
No 189
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=51.49 E-value=29 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=29.1
Q ss_pred HHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 30 IFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 30 ~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
-+.+||.|.++.=...|++ -|.+.++++..+++|....|
T Consensus 16 ~L~kfG~i~Y~Skk~kYvv-lYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVV-LYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 4678999999876666765 46788888888887765544
No 190
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=51.42 E-value=62 Score=24.75 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=27.1
Q ss_pred CCCCCcHHHHHHHHH-------hc-CCeeEEEEe----------C---C-eEEEEECCHHHHHHHHH
Q 021642 18 LASRTRSRDLEEIFS-------RY-GRIRDVDMK----------R---D-FAFVEFSDPRDADDARY 62 (309)
Q Consensus 18 L~~~~te~dL~~~F~-------~~-G~v~~~~i~----------~---~-~afV~F~~~~~a~~Al~ 62 (309)
|.++++++++..++. .. |+|..++.. + | |.++.|.-..++.+.|+
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 445566666555544 43 466665531 1 1 78889987777777765
No 191
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=50.85 E-value=17 Score=31.41 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=32.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK 43 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~ 43 (309)
......+++.+++..++..++..+|..+|.+..+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 3467889999999999999999999999999777664
No 192
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=49.36 E-value=61 Score=29.19 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCcEEEEccCCCCC--cHHHHHHHHHhcCCee----EE-EEeCCeEEEEEC
Q 021642 8 YGGTRLYVGRLASRT--RSRDLEEIFSRYGRIR----DV-DMKRDFAFVEFS 52 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~--te~dL~~~F~~~G~v~----~~-~i~~~~afV~F~ 52 (309)
+++..|+|.-|..+. +..+|+.+|.++|... .+ .++...|+|+|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~~~ 143 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIEVP 143 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEEEEC
Confidence 456778888887665 6789999999987532 12 244457888885
No 193
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.95 E-value=9.9 Score=31.01 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=46.0
Q ss_pred EEEEccCC--CCCcHHHHHHHHHh----cCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 12 RLYVGRLA--SRTRSRDLEEIFSR----YGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 12 ~v~V~nL~--~~~te~dL~~~F~~----~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
...|+.+- ..++...|...+.+ .|.+.-..+..++..+.|.+++++..++. .....|++..|.++.-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34555552 24567777776654 35666666677899999999999999884 34556677666665544
No 194
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=47.40 E-value=93 Score=21.50 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=34.5
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHh
Q 021642 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~~ 63 (309)
..+++.+++..+-+|.+|....| ...|.+.+.+++...+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVTGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHH
Confidence 46788889999999999998877 778999999999888543
No 195
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.88 E-value=55 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=31.7
Q ss_pred EEccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHH
Q 021642 14 YVGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDAR 61 (309)
Q Consensus 14 ~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al 61 (309)
||--++...+..+|++.++. |+ .|..|..+ .+ -|||.+....+|.+..
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 33346678889999999987 44 45554432 23 7999997766655443
No 196
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.94 E-value=48 Score=31.51 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 23 RSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
+.++|..+|...--|..+..-..--||.|.++.+++..|..++|..+.|..|
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 4577888888766666665555567889999999999888888887776554
No 197
>PRK00110 hypothetical protein; Validated
Probab=43.85 E-value=80 Score=28.60 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCcEEEEccCCCCC--cHHHHHHHHHhcCCee----EE-EEeCCeEEEEEC
Q 021642 8 YGGTRLYVGRLASRT--RSRDLEEIFSRYGRIR----DV-DMKRDFAFVEFS 52 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~--te~dL~~~F~~~G~v~----~~-~i~~~~afV~F~ 52 (309)
+.+..|+|.-|..+. |..+|+.+|.++|... .| .++...|+|+|.
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~ 143 (245)
T PRK00110 92 PGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIE 143 (245)
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeC
Confidence 356778888887665 6789999999986422 12 244457888886
No 198
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=43.21 E-value=81 Score=22.44 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCH----HHHHHHHH
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDP----RDADDARY 62 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~----~~a~~Al~ 62 (309)
..+|+|.++.-..-...+...+.....|..+.+.. +-++|+|.+. +++..||+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~ 61 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE 61 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH
Confidence 45788888877667788999999988787777654 4699999983 34444443
No 199
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=42.58 E-value=1.6e+02 Score=22.74 Aligned_cols=57 Identities=11% Similarity=0.228 Sum_probs=41.2
Q ss_pred cEEEEccCCCCC---cHHHHHHHHHhcC-CeeEEEEeCCeEEEEECCHHHHHHHHHhcCcc
Q 021642 11 TRLYVGRLASRT---RSRDLEEIFSRYG-RIRDVDMKRDFAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 11 ~~v~V~nL~~~~---te~dL~~~F~~~G-~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~ 67 (309)
-.|.|......+ +..+|..++.+.| .++.+....+--.|.|.+.++-..|.+.|...
T Consensus 32 pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 32 PAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred CcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHH
Confidence 455565543222 2358899999888 67778887889999999999888887766543
No 200
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=42.49 E-value=47 Score=23.76 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=35.3
Q ss_pred HHHHHHHHhcC-CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 25 RDLEEIFSRYG-RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 25 ~dL~~~F~~~G-~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
++|.+.|...| +|..+.-+. ..-||+++...+... .|+=..|.+..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46778888888 677665432 277888877655333 345567788888888654
No 201
>PRK02886 hypothetical protein; Provisional
Probab=42.32 E-value=47 Score=25.10 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=28.6
Q ss_pred HHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 30 IFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 30 ~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.+.+||.|.++.=...|++ -|.+.++++..+++|....|
T Consensus 20 ~LrkyG~I~Y~Skr~kYvv-lYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRLKYAV-LYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 3678999998765555664 46788888888887765544
No 202
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=41.33 E-value=65 Score=24.54 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=37.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHh-cCC-eeEEEEeCC---------eEEEEECCHHHHHHHHHhcCcc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSR-YGR-IRDVDMKRD---------FAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~-~G~-v~~~~i~~~---------~afV~F~~~~~a~~Al~~lng~ 67 (309)
.+++.||+ +|-..++-..|.++|.. .|+ ...+.+.-+ =+-+.|++-+.++...+++-|.
T Consensus 32 qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 32 QDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred CCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 35566665 57777888888888864 563 344444211 4456677777777777666554
No 203
>PRK02302 hypothetical protein; Provisional
Probab=40.31 E-value=52 Score=24.96 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 30 IFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 30 ~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
-+.+||.|.++.=...|++ -|.+.++++..+++|....|
T Consensus 22 ~LrkfG~I~Y~Skk~kYvv-lYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSKRSRYLV-LYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEeccccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 3678999998765555664 46788888888887765544
No 204
>PF15063 TC1: Thyroid cancer protein 1
Probab=39.36 E-value=18 Score=26.50 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.5
Q ss_pred EEEccCCCCCcHHHHHHHHHhcCCe
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYGRI 37 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G~v 37 (309)
--+.||-++++..+|+.||..-|..
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccch
Confidence 3467888999999999999999964
No 205
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=38.73 E-value=94 Score=24.32 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCeeEEEEeCC-----eEEEEECCHHHHHHHH
Q 021642 24 SRDLEEIFSRYGRIRDVDMKRD-----FAFVEFSDPRDADDAR 61 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i~~~-----~afV~F~~~~~a~~Al 61 (309)
|.+|..++.++|--.+..+..+ ||++++.|.+....+|
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 5678888888886555433332 9999999554444433
No 206
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=38.49 E-value=7 Score=34.72 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=46.7
Q ss_pred CCcEEEEcc----CCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCC
Q 021642 9 GGTRLYVGR----LASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGS 72 (309)
Q Consensus 9 ~~~~v~V~n----L~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr 72 (309)
...+++.|+ |...++++.+...|...|.+..+.+.. +++||++.-....-.|+...++.++.-+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 345666777 777888888888888888887777642 3889888877777777777766655433
No 207
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.95 E-value=1.7e+02 Score=21.96 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=25.9
Q ss_pred cHHHHHHHHHhcC-CeeEEEEe--C----C-eEEEEECC--HHHHHHHHHhcC
Q 021642 23 RSRDLEEIFSRYG-RIRDVDMK--R----D-FAFVEFSD--PRDADDARYSLN 65 (309)
Q Consensus 23 te~dL~~~F~~~G-~v~~~~i~--~----~-~afV~F~~--~~~a~~Al~~ln 65 (309)
.-.++...|..+| .++.|.-. + . +-||+|+- .+.++.||+.|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 4566778888887 55555431 1 1 45677774 345566776664
No 208
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=36.97 E-value=54 Score=24.99 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCCCCcHHHHHHHHHhcC-CeeEEEEeCC----eEEEEECCHHHHHHHHHhcC
Q 021642 18 LASRTRSRDLEEIFSRYG-RIRDVDMKRD----FAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 18 L~~~~te~dL~~~F~~~G-~v~~~~i~~~----~afV~F~~~~~a~~Al~~ln 65 (309)
+-..++...|..-|-.-| +-+-..+-++ +|.|+|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 334556666665554444 2233334344 99999999999999887663
No 209
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=36.91 E-value=1.6e+02 Score=21.07 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=35.3
Q ss_pred EEEccCCCCCcHHHHHHHHHh-cCCe-eEEEE--eC-CeEEEEECCHHHHHHHHHhcC
Q 021642 13 LYVGRLASRTRSRDLEEIFSR-YGRI-RDVDM--KR-DFAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~-~G~v-~~~~i--~~-~~afV~F~~~~~a~~Al~~ln 65 (309)
+++-.|+..++.++|...+.+ |+.. ..+.| .- +--+|.+.+.+++..|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 444457778999998877754 5532 12222 22 234899999999999997653
No 210
>PRK11901 hypothetical protein; Reviewed
Probab=36.49 E-value=66 Score=30.35 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=36.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE----eCC---eEEE--EECCHHHHHHHHHhcCccc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM----KRD---FAFV--EFSDPRDADDARYSLNGRD 68 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i----~~~---~afV--~F~~~~~a~~Al~~lng~~ 68 (309)
..++|-|..+ ..++.|..|..+++. ..+.| ..| |.+| .|.+.++|+.||..|....
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~L-~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQNL-SHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcCc-CceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 4466666554 357888888887752 22222 223 4433 7889999999999887544
No 211
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.47 E-value=43 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCeeEEEE
Q 021642 24 SRDLEEIFSRYGRIRDVDM 42 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i 42 (309)
.++|+++|+.+|+|.-+.|
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999876544
No 212
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=36.30 E-value=59 Score=23.70 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=21.2
Q ss_pred eeEEEEeCCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 37 IRDVDMKRDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 37 v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
|..+.+..+..+|.|+..++.+.|. .|.|..|
T Consensus 47 v~~~~~~~~~~i~~~~gi~~r~~Ae-~l~g~~l 78 (84)
T PF01782_consen 47 VESVRPHGKSLIVKFEGIDDREAAE-ALRGCEL 78 (84)
T ss_dssp EEEEEEETTEEEEEETT--SHHHHH-TTTT-EE
T ss_pred EEEEEEeCCEEEEEEcCCCCHHHHH-hhCCCEE
Confidence 4445556679999999999999885 6666543
No 213
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=36.18 E-value=1.1e+02 Score=23.96 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCeeEEEEe-----C--------------C----eEEEEECCHHHHHHHHHhc
Q 021642 26 DLEEIFSRYGRIRDVDMK-----R--------------D----FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 26 dL~~~F~~~G~v~~~~i~-----~--------------~----~afV~F~~~~~a~~Al~~l 64 (309)
..-.+|..||.+..+... . + |.+|+|.+.+....+..++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 345788899987766541 1 1 9999999999888776543
No 214
>PRK12378 hypothetical protein; Provisional
Probab=35.37 E-value=1.1e+02 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=30.3
Q ss_pred CCCcEEEEccCCCCC--cHHHHHHHHHhcCCee----EEE-EeCCeEEEEEC
Q 021642 8 YGGTRLYVGRLASRT--RSRDLEEIFSRYGRIR----DVD-MKRDFAFVEFS 52 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~--te~dL~~~F~~~G~v~----~~~-i~~~~afV~F~ 52 (309)
+++..|+|.-|..+. |..+|+.+|.++|.-. .|. ++...|+|+|.
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~ 140 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFE 140 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEEeC
Confidence 456788888887765 6789999999986421 122 33345666664
No 215
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.59 E-value=42 Score=32.03 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCcEEEEccCCC----CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHH
Q 021642 9 GGTRLYVGRLAS----RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADD 59 (309)
Q Consensus 9 ~~~~v~V~nL~~----~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~ 59 (309)
...-|||.|=.. -++.++|+.++..... .+.|+-+.||++|.. +++..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDEAY~eF~~-~~~~~ 196 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDEAYIEFSP-ESSLE 196 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeCchhhcCC-chhhh
Confidence 356788887642 3478999999988766 445566899999999 43333
No 216
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=34.57 E-value=20 Score=24.87 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=27.5
Q ss_pred cCCeeEEEEeCCeEEEEECC-HHHHHHHHHhcCc----cccCCCceeeeeccC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD-PRDADDARYSLNG----RDVDGSRIIVEFARG 81 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~-~~~a~~Al~~lng----~~l~Gr~I~V~~a~~ 81 (309)
.|.|+++...++||||+-.+ .+++--.+..|.+ ....|..|.+++...
T Consensus 2 ~G~Vk~~~~~kGfGFI~~~~~g~diffh~~~~~~~~~~~~~~G~~V~f~~~~~ 54 (65)
T cd04458 2 TGTVKWFDDEKGFGFITPDDGGEDVFVHISALEGDGFRSLEEGDRVEFELEEG 54 (65)
T ss_pred cEEEEEEECCCCeEEEecCCCCcCEEEEhhHhhccCCCcCCCCCEEEEEEEEC
Confidence 47788888889999998776 3332222222222 223456666665553
No 217
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=34.56 E-value=17 Score=33.78 Aligned_cols=20 Identities=45% Similarity=1.041 Sum_probs=17.7
Q ss_pred CccccccCCCCccccccCCC
Q 021642 122 WKNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 122 ~~~~c~~cg~~gh~sr~~~~ 141 (309)
.-+.||+||..||+..+|+-
T Consensus 175 pgY~CyRCGqkgHwIqnCpT 194 (427)
T COG5222 175 PGYVCYRCGQKGHWIQNCPT 194 (427)
T ss_pred CceeEEecCCCCchhhcCCC
Confidence 35789999999999999974
No 218
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=34.15 E-value=1.7e+02 Score=20.86 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHhcC-CeeEEEEeC---C----eEEEEECC---HHHHHHHHHhcCc
Q 021642 22 TRSRDLEEIFSRYG-RIRDVDMKR---D----FAFVEFSD---PRDADDARYSLNG 66 (309)
Q Consensus 22 ~te~dL~~~F~~~G-~v~~~~i~~---~----~afV~F~~---~~~a~~Al~~lng 66 (309)
-.-.+|.++|.++| .|..+.... + .-||+++. .+++.++++.|..
T Consensus 13 G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 13 GALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred CHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34677888898887 666664421 1 44566663 5666777776654
No 219
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=33.15 E-value=59 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 24 SRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
+++|++.+ .-| +|+.|-|...++++.+|+.+-|..+.+
T Consensus 1 ~eE~k~~i-~~g---------g~v~~pwcg~~ece~~ike~t~at~rc 38 (68)
T PF09180_consen 1 YEEFKEAI-EKG---------GFVLVPWCGDEECEEKIKEETGATIRC 38 (68)
T ss_dssp HHHHHHHH-HTS---------SEEEEEES-SHHHHHHHHHHHS-EEEE
T ss_pred ChHHHHHH-hCC---------CEEEEEccCCHHHHHHHHHhcCCcEeE
Confidence 35677776 333 477888999899999998766555433
No 220
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=32.94 E-value=36 Score=21.84 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=11.1
Q ss_pred CCccCCCCCCCC--CCCCCC
Q 021642 103 RCFNCGIDGHWA--RDCKAG 120 (309)
Q Consensus 103 rc~~~G~~Gh~a--~dc~~~ 120 (309)
.|.+||..||+. +.||..
T Consensus 3 kC~~CG~~GH~~t~k~CP~~ 22 (40)
T PF15288_consen 3 KCKNCGAFGHMRTNKRCPMY 22 (40)
T ss_pred cccccccccccccCccCCCC
Confidence 466777777766 345543
No 221
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.93 E-value=1.5e+02 Score=19.73 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=18.2
Q ss_pred EEEccCCCCCcHHHHHHHHHhcC-CeeEEEE
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYG-RIRDVDM 42 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i 42 (309)
|.|...+......+|-.+|.++| .|..+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~ 32 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRV 32 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEE
Confidence 33433344445678888888876 5666544
No 222
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=32.22 E-value=81 Score=29.35 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=36.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeCCeEEEEECCHHHH
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKRDFAFVEFSDPRDA 57 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~~~~afV~F~~~~~a 57 (309)
.+..++|-..+++..|..|-.+|.+.| +|.+.+-..|.-||.|...++-
T Consensus 197 ~g~~~l~~~~~fd~aW~rl~~aL~~~gf~V~d~drs~G~~~v~y~~~~~~ 246 (303)
T PF06804_consen 197 NGQPALILRAPFDRAWRRLGLALDRLGFTVEDRDRSQGVYYVRYKPPDSE 246 (303)
T ss_dssp TS-EEEEEES-HHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEE----HH
T ss_pred CCceEEEECCcHHHHHHHHHHHHHhCCCEEEecccccEEEEEEEcCCChh
Confidence 456677888999999999999999999 7777777789999999876643
No 223
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.14 E-value=98 Score=26.66 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=36.6
Q ss_pred EEEccCCCCCcHHHHHHHHHhcC-CeeEEEE------eCCeEEEEECCHHHHHHHHHhc
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYG-RIRDVDM------KRDFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i------~~~~afV~F~~~~~a~~Al~~l 64 (309)
=||+|.+....-..|-+.|...| +|+.+.- +.++-+|.|.+.+++..++..+
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 47889988888889988888877 5554432 2357899999999999988643
No 224
>PRK15464 cold shock-like protein CspH; Provisional
Probab=32.04 E-value=28 Score=25.06 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=28.7
Q ss_pred cCCeeEEEEeCCeEEEEECCH-HHHH---HHHHhcCcc--ccCCCceeeeeccC
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP-RDAD---DARYSLNGR--DVDGSRIIVEFARG 81 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~-~~a~---~Al~~lng~--~l~Gr~I~V~~a~~ 81 (309)
.|.|++.+-.+||+||+-.+- +|+- .||+. +|. ...|..|.+++...
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~ 58 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNG 58 (70)
T ss_pred eEEEEEEECCCCeEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEEC
Confidence 488999999999999976652 2322 22321 222 33566666666553
No 225
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=31.92 E-value=2e+02 Score=20.90 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=36.9
Q ss_pred EEEccCCCCCcHHHHHHHHHh-------cCCeeEEEE--e--CC--eEEEEECCHHHHHHHHHhcCcccc
Q 021642 13 LYVGRLASRTRSRDLEEIFSR-------YGRIRDVDM--K--RD--FAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~-------~G~v~~~~i--~--~~--~afV~F~~~~~a~~Al~~lng~~l 69 (309)
|..-+||..+|.++|..+..+ +..|.++.- . .+ ||+.+=.+++.+.++.+. .|+.+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 456688888999998877653 334545432 2 22 888888888888877654 35543
No 226
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=1.4e+02 Score=29.48 Aligned_cols=38 Identities=26% Similarity=0.723 Sum_probs=25.6
Q ss_pred CccCCCCCCCCCCCCC---CCCccccccCCCCccccccCCC
Q 021642 104 CFNCGIDGHWARDCKA---GDWKNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 104 c~~~G~~Gh~a~dc~~---~~~~~~c~~cg~~gh~sr~~~~ 141 (309)
|..|-..+||-.-|.. ....+.|++|+..||+...|+-
T Consensus 136 ~~~~~~~~~~iq~~~~~g~Pppsy~c~rc~~~g~wikacpt 176 (448)
T KOG0314|consen 136 CHRCNSPGHFIQHCSTNGSPPPSYKCVKCPTPGPWIKACPT 176 (448)
T ss_pred eeecccCccccccccccCCCCCCcceecCCCCCccceeccc
Confidence 3444445555444442 3346889999999999999974
No 227
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=30.84 E-value=33 Score=24.35 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=28.6
Q ss_pred cCCeeEEEEeCCeEEEEECCH-HHHHHHHHhc--Cc--cccCCCceeeeeccC
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP-RDADDARYSL--NG--RDVDGSRIIVEFARG 81 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~-~~a~~Al~~l--ng--~~l~Gr~I~V~~a~~ 81 (309)
.|.|++.+..++||||+-.+. +++---+..| +| ..-.|..|..++...
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~~~g~~~l~~G~~V~f~~~~~ 55 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQMDGYRTLKAGQKVQFEVVQG 55 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhhhcCCCCCCCCCEEEEEEEEC
Confidence 588999999999999987652 3322222222 23 123466666666553
No 228
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=30.75 E-value=1.9e+02 Score=29.87 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=5.5
Q ss_pred CCcEEEEccC
Q 021642 9 GGTRLYVGRL 18 (309)
Q Consensus 9 ~~~~v~V~nL 18 (309)
+.|.|.|..+
T Consensus 38 getSiViSDV 47 (1027)
T KOG3580|consen 38 GETSIVISDV 47 (1027)
T ss_pred CceeEEEeec
Confidence 4456666544
No 229
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=30.70 E-value=34 Score=24.88 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.5
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++.+..++|+||+-.+
T Consensus 3 ~G~Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 3 KGTVKWFNNAKGFGFICPEG 22 (74)
T ss_pred CeEEEEEeCCCCeEEEeeCC
Confidence 48899999999999996554
No 230
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=30.59 E-value=2.2e+02 Score=22.78 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=28.7
Q ss_pred CCeeEEEEeCC-eEEEEECCHHHHHHHHH-hcCccccCCCceeeeeccC
Q 021642 35 GRIRDVDMKRD-FAFVEFSDPRDADDARY-SLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 35 G~v~~~~i~~~-~afV~F~~~~~a~~Al~-~lng~~l~Gr~I~V~~a~~ 81 (309)
..|..|.|.-| +.-|+ ++.++.|++ ...|+.+.|..|.|+....
T Consensus 24 ~rV~~V~l~IG~ls~V~---pe~L~faf~~~~~gT~~egA~L~I~~vp~ 69 (124)
T PRK00762 24 TEVTEVTLEIGRLTMLN---PEQLRFMLDVLAEGTIAEDADLIVEMIPV 69 (124)
T ss_pred CeEEEEEEEECCccccC---HHHHHHHHHHHhCCCCcCCCEEEEEecCe
Confidence 47777777544 45554 444555544 2367888999999987663
No 231
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=30.31 E-value=65 Score=29.10 Aligned_cols=68 Identities=9% Similarity=0.148 Sum_probs=35.9
Q ss_pred CcEEEEccCCCCCc----HHHHHHHHHhcC-CeeEEEEe---CCeEEEEE-CCHHHHHHHHHhcCccccCCCceeee
Q 021642 10 GTRLYVGRLASRTR----SRDLEEIFSRYG-RIRDVDMK---RDFAFVEF-SDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 10 ~~~v~V~nL~~~~t----e~dL~~~F~~~G-~v~~~~i~---~~~afV~F-~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
...||||+|....- .+.|..++.+.+ .+..+.+. .|||.-.. .+.++.+.+|+++.+..|--..+.|.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~G 113 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVG 113 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEe
Confidence 45789999976543 234444443332 33333332 23443222 36677788888776666544333333
No 232
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.23 E-value=1.5e+02 Score=25.28 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=38.7
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhc
Q 021642 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~l 64 (309)
+|+..+.++-|+++-+-+|-|.+. --+.-++.|.+.+.+++||..|
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef--ee~~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF--EEDDKVVIEGDKERIKKALKEF 163 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe--cCCcEEEEeccHHHHHHHHHHH
Confidence 688899999999999999988776 3345578899999999999765
No 233
>PRK15463 cold shock-like protein CspF; Provisional
Probab=29.87 E-value=33 Score=24.66 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=28.0
Q ss_pred cCCeeEEEEeCCeEEEEECCH-HHHH---HHHHhc-CccccCCCceeeeecc
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP-RDAD---DARYSL-NGRDVDGSRIIVEFAR 80 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~-~~a~---~Al~~l-ng~~l~Gr~I~V~~a~ 80 (309)
.|.|++.+-.++|+||+-.+- +|+- .||... ....-.|..|.+++..
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~ 57 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRIN 57 (70)
T ss_pred eEEEEEEeCCCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEE
Confidence 588999999999999976552 2222 233221 1122346666666655
No 234
>PRK14998 cold shock-like protein CspD; Provisional
Probab=29.73 E-value=37 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=16.9
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++.+..++||||+-.+
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred CeEEEEEeCCCceEEEecCC
Confidence 48899999999999997654
No 235
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=29.16 E-value=36 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.9
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++.+..++||||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 48899999899999998655
No 236
>COG1278 CspC Cold shock proteins [Transcription]
Probab=29.05 E-value=15 Score=26.34 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=29.0
Q ss_pred cCCeeEEEEeCCeEEEEECCH-HHHHHHHHh--cCcc--ccCCCceeeeeccC
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP-RDADDARYS--LNGR--DVDGSRIIVEFARG 81 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~-~~a~~Al~~--lng~--~l~Gr~I~V~~a~~ 81 (309)
-|.|++.+-.++||||+=++- +|+-.-+.+ ++|. ...|+++..++...
T Consensus 3 ~GtVKwfn~~KGfGFI~p~~G~~DvFVH~Sai~~~g~~~L~eGQ~V~f~~~~g 55 (67)
T COG1278 3 TGTVKWFNATKGFGFITPEDGGKDVFVHISAIQRAGFRTLREGQKVEFEVEQG 55 (67)
T ss_pred cceEEEeeCCCcceEcCCCCCCcCEEEEeeeeccCCCcccCCCCEEEEEEecC
Confidence 377888888899999987665 343322222 2332 23567766666553
No 237
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=63 Score=25.03 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=15.7
Q ss_pred eEEEEECCHHHHHHHHHhc
Q 021642 46 FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 46 ~afV~F~~~~~a~~Al~~l 64 (309)
|.+++|.+.+....|..+|
T Consensus 68 FsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 68 FSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEcCchhHHHHHHHHh
Confidence 8999999999888777654
No 238
>PRK10943 cold shock-like protein CspC; Provisional
Probab=28.60 E-value=37 Score=24.26 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred hcCCeeEEEEeCCeEEEEECCH-HHHHHHHHhc--Cc--cccCCCceeeeeccC
Q 021642 33 RYGRIRDVDMKRDFAFVEFSDP-RDADDARYSL--NG--RDVDGSRIIVEFARG 81 (309)
Q Consensus 33 ~~G~v~~~~i~~~~afV~F~~~-~~a~~Al~~l--ng--~~l~Gr~I~V~~a~~ 81 (309)
..|.|++.+-.+|||||+=.+- +++---+..| .+ ....|..|..++...
T Consensus 4 ~~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~ 57 (69)
T PRK10943 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57 (69)
T ss_pred cceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccccCCCCCCCCCEEEEEEEEC
Confidence 3588999998999999986543 2322112222 12 123566666666553
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.59 E-value=54 Score=30.37 Aligned_cols=32 Identities=28% Similarity=0.210 Sum_probs=23.1
Q ss_pred EEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 47 AFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 47 afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
|||+|.+..+|+.|++.+.... ...+.|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998554433 3445666554
No 240
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.50 E-value=2.3e+02 Score=20.39 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhcC-CeeEEEEeC------C-eEEEEEC-CHHHHHHHHHhcCc
Q 021642 23 RSRDLEEIFSRYG-RIRDVDMKR------D-FAFVEFS-DPRDADDARYSLNG 66 (309)
Q Consensus 23 te~dL~~~F~~~G-~v~~~~i~~------~-~afV~F~-~~~~a~~Al~~lng 66 (309)
.-.++...|..+| .+..+.-.. . +-||+++ +.+.++.||+.|..
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 4567788888887 555554311 1 4567766 33466777776643
No 241
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.35 E-value=1.9e+02 Score=20.62 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=38.1
Q ss_pred ccCCCCCcHHHHHHHHHh-cCCe-eEEEE--e-CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 16 GRLASRTRSRDLEEIFSR-YGRI-RDVDM--K-RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 16 ~nL~~~~te~dL~~~F~~-~G~v-~~~~i--~-~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
-.++..++.++|...+.. |+.. ..+.| . .+--+|.+.+.++...|++.+... ++..|+|.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 456777899888877754 6542 22222 2 223589999999999999866433 33344443
No 242
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=28.28 E-value=25 Score=24.56 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEEeC-C----eEEEEECCHHHHHHHHHhcC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDMKR-D----FAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~-~~i~~-~----~afV~F~~~~~a~~Al~~ln 65 (309)
...|.|+.+...-..+.+..-|...|.-.. +.+.. + +-+-.|.+.++|+.++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 456777766644444444444444453322 22222 1 22337889999999988876
No 243
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=27.93 E-value=63 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=21.0
Q ss_pred EEEEECCHHHHHHHHHhc-CccccCCCceeeee
Q 021642 47 AFVEFSDPRDADDARYSL-NGRDVDGSRIIVEF 78 (309)
Q Consensus 47 afV~F~~~~~a~~Al~~l-ng~~l~Gr~I~V~~ 78 (309)
|+|+|.+..-|+..+..- +-..|++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999998887521 22345555555543
No 244
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=27.85 E-value=1.7e+02 Score=29.26 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=18.0
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 021642 103 RCFNCGIDGHWARDCKAGDW 122 (309)
Q Consensus 103 rc~~~G~~Gh~a~dc~~~~~ 122 (309)
.|+.||-.||+..||+..+.
T Consensus 287 ~c~~cg~~gH~~~dc~~~~q 306 (554)
T KOG0119|consen 287 VCKICGPLGHISIDCKVNDQ 306 (554)
T ss_pred cccccCCcccccccCCCccc
Confidence 79999999999999998744
No 245
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=27.49 E-value=2.7e+02 Score=21.93 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=29.0
Q ss_pred cCCeeEEEEeCC-eEEEEECCHHHHHHHHHhc-CccccCCCceeeeeccC
Q 021642 34 YGRIRDVDMKRD-FAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARG 81 (309)
Q Consensus 34 ~G~v~~~~i~~~-~afV~F~~~~~a~~Al~~l-ng~~l~Gr~I~V~~a~~ 81 (309)
+.+|..|.|.-| ++-| +++.++.|++.+ .|+.+.|..|.|+....
T Consensus 23 ~~~V~~V~l~iG~ls~V---~p~~L~faf~~~~~~t~~ega~L~I~~~p~ 69 (115)
T TIGR00100 23 AKKVTRVTLEIGELSCV---NPSQLQFAFEVVREGTVAEGAKLNIEDEPV 69 (115)
T ss_pred CCeEEEEEEEEcccccc---CHHHHHHHHHHHhCCCccCCCEEEEEeeCc
Confidence 346777777543 4444 455566665533 57788899999887663
No 246
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=27.28 E-value=42 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.0
Q ss_pred CCeeEEEEeCCeEEEEECCHH
Q 021642 35 GRIRDVDMKRDFAFVEFSDPR 55 (309)
Q Consensus 35 G~v~~~~i~~~~afV~F~~~~ 55 (309)
|.|++++..++||||+-.+.+
T Consensus 3 G~V~~~~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDGG 23 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEEECCCCceEEEEcccc
Confidence 678888878899999987644
No 247
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.17 E-value=2.3e+02 Score=20.02 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcC
Q 021642 25 RDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 25 ~dL~~~F~~~G~v~~~~i~----~~~afV~F~~~~~a~~Al~~ln 65 (309)
.+|.+++.++| +..+.|. -++.|+.|.+.+.++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 5555553 2388888888888888877653
No 248
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.02 E-value=45 Score=20.87 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHHHhcCC
Q 021642 20 SRTRSRDLEEIFSRYGR 36 (309)
Q Consensus 20 ~~~te~dL~~~F~~~G~ 36 (309)
..+++++|++.|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36789999999987653
No 249
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=26.72 E-value=2.3e+02 Score=22.20 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCeeEEEEeCC-eEEEEECCHHHHHHHHHhc-CccccCCCceeeeeccC
Q 021642 35 GRIRDVDMKRD-FAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARG 81 (309)
Q Consensus 35 G~v~~~~i~~~-~afV~F~~~~~a~~Al~~l-ng~~l~Gr~I~V~~a~~ 81 (309)
..|..|.|.-| ++-| +++..+.|++.+ .|+.+.|..|.|+....
T Consensus 24 ~rV~~V~l~iG~ls~v---~pe~L~f~f~~~~~~T~~egA~L~I~~vp~ 69 (113)
T PRK12380 24 KRVTAVWLEIGALSCV---EESAVRFSFEIVCHGTVAQGCDLHIVYKPA 69 (113)
T ss_pred CeEEEEEEEEcCcccc---CHHHHHHHHHHHhCCCccCCCEEEEEeeCc
Confidence 36777777543 3333 455555565533 58889999999988764
No 250
>PRK09890 cold shock protein CspG; Provisional
Probab=26.68 E-value=40 Score=24.15 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.1
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++.+-.++|+||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 58899998899999998765
No 251
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.42 E-value=1.2e+02 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=23.2
Q ss_pred CeeEEEE---eCCeEEEEECCHHHHHHHHHhcCccc
Q 021642 36 RIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRD 68 (309)
Q Consensus 36 ~v~~~~i---~~~~afV~F~~~~~a~~Al~~lng~~ 68 (309)
.|..+.. .+||-|||=.++.++..|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4555554 36799999999999999998776544
No 252
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=26.16 E-value=1.2e+02 Score=22.79 Aligned_cols=30 Identities=20% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEccCCCCCcHHHHHHHHHh-cC-CeeEEEE
Q 021642 13 LYVGRLASRTRSRDLEEIFSR-YG-RIRDVDM 42 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i 42 (309)
.|+-.++..++..||+++|++ || .|..|..
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt 53 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNT 53 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEE
Confidence 344456788999999999987 55 4555544
No 253
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=26.13 E-value=3.2e+02 Score=21.81 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHHHHHhcC--CeeEEEEeCCeEEEEECCHHHHHHHHHh-cCccccCCCceeeeeccC
Q 021642 27 LEEIFSRYG--RIRDVDMKRDFAFVEFSDPRDADDARYS-LNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 27 L~~~F~~~G--~v~~~~i~~~~afV~F~~~~~a~~Al~~-lng~~l~Gr~I~V~~a~~ 81 (309)
+.+++.+.| +|+.|.|. .|-...-+++...-|++. ..|+.+.|..|.|++...
T Consensus 14 i~~~A~~~~a~~V~~V~l~--IG~ls~v~~~~l~FaFev~~egT~aega~l~Ie~~p~ 69 (115)
T COG0375 14 IEEQAEKHGAKRVTAVWLE--IGELSCVEPEALRFAFEVVAEGTIAEGAELHIEEEPA 69 (115)
T ss_pred HHHHHHHcCCceEEEEEEE--EcceeccCHHHHHHHHHHHhccCcccCCEEEEEEecc
Confidence 455566655 56666654 344445567777777764 478889999999988764
No 254
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=25.77 E-value=2.3e+02 Score=22.47 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHHhc--------CCeeEEEEe----------C---C-eEEEEECCHHHHHHHHH---hcCccccCCC
Q 021642 18 LASRTRSRDLEEIFSRY--------GRIRDVDMK----------R---D-FAFVEFSDPRDADDARY---SLNGRDVDGS 72 (309)
Q Consensus 18 L~~~~te~dL~~~F~~~--------G~v~~~~i~----------~---~-~afV~F~~~~~a~~Al~---~lng~~l~Gr 72 (309)
|.++++++++..++.+| |+|..+... + + |.++.|.....+..-|+ .||...|---
T Consensus 9 v~p~~see~~~~~ve~~~~~l~~~gg~i~~~e~wG~R~LAY~IkK~~~g~Y~l~~f~~~~~~i~Eler~~rin~~VlR~l 88 (112)
T COG0360 9 VRPDLSEEQVAALVEKYKGVLTNNGGEIHKVEDWGKRRLAYPIKKLREGHYVLMNFEAEPAAIAELERLLRINEDVLRHL 88 (112)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEehhhhhhhhcceecccceEEEEEEEEEcCHHHHHHHHHHhccchhhheee
Confidence 45666766666665544 455555431 1 1 88889988776666655 3444444333
Q ss_pred ceeeee
Q 021642 73 RIIVEF 78 (309)
Q Consensus 73 ~I~V~~ 78 (309)
.|.++.
T Consensus 89 iik~~~ 94 (112)
T COG0360 89 IIKVEK 94 (112)
T ss_pred EEEech
Confidence 344443
No 255
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.66 E-value=3.3e+02 Score=21.48 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhcC-CeeEEEEe------CC-eEEEEEC-CHHHHHHHHHhcC
Q 021642 23 RSRDLEEIFSRYG-RIRDVDMK------RD-FAFVEFS-DPRDADDARYSLN 65 (309)
Q Consensus 23 te~dL~~~F~~~G-~v~~~~i~------~~-~afV~F~-~~~~a~~Al~~ln 65 (309)
.-.++...|..+| .++.|.-. .. +-||+|+ +.++++.||+.|.
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~ 105 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLR 105 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHH
Confidence 4556777777776 45554331 11 3456655 3445667777664
No 256
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.50 E-value=1.4e+02 Score=29.90 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=42.0
Q ss_pred EEccCCCCCc---HHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 14 YVGRLASRTR---SRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 14 ~V~nL~~~~t---e~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
+||||.+-.. ...|..+-.+||.|..+.|-. .-+|...+.+.|+.|+. -++..|.++..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 5788865433 345666667899999666522 34677788999999984 47888888886
No 257
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=25.35 E-value=44 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.7
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++.+-.++||||+-.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEeCCCCcEEEecCC
Confidence 58888888889999998654
No 258
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=2.3e+02 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHhcC-CeeEEEEeCC----eEEEEECCHHHHHHH
Q 021642 25 RDLEEIFSRYG-RIRDVDMKRD----FAFVEFSDPRDADDA 60 (309)
Q Consensus 25 ~dL~~~F~~~G-~v~~~~i~~~----~afV~F~~~~~a~~A 60 (309)
+.++++|+.+| +++++.+..| .+++|-.+...+..+
T Consensus 33 ~av~~~les~G~k~~~~y~T~GeYD~V~i~EapDda~~~~~ 73 (104)
T COG4274 33 AAVRALLESMGGKVKEQYWTLGEYDVVAIVEAPDDAVATRF 73 (104)
T ss_pred HHHHHHHHHcCcEEEEEEEeeccccEEEEEecCCHHHHHHH
Confidence 56788899987 7777777665 445555555544443
No 259
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=24.78 E-value=1.3e+02 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHh-cCCeeEEEE
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSR-YGRIRDVDM 42 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~-~G~v~~~~i 42 (309)
+|||+ .|...++.+||.++|.+ |..-..|.|
T Consensus 247 ~Ti~~-~l~~~~t~~~i~~~y~~~Y~~epfVrv 278 (349)
T COG0002 247 ATIYL-KLKDLVTLEELHAAYEEFYAGEPFVRV 278 (349)
T ss_pred EEEEE-ecCCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 34444 35556899999999976 455455555
No 260
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=24.64 E-value=1.2e+02 Score=27.23 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=40.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEEeC-------C---eEEEEECCHHHHHHHHHhc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDMKR-------D---FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~-v~~~~i~~-------~---~afV~F~~~~~a~~Al~~l 64 (309)
.-+|.|.-||-...++-++.+|+..|- |.-..+.. | |..|+.....-+.+||.+|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhh
Confidence 457888889988899999999999994 33333321 1 7778888777777777655
No 261
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=24.52 E-value=3.5e+02 Score=21.28 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=35.2
Q ss_pred EEEccCCCCCcHHHHHHHHHh-cC---CeeEEEEeC-CeEEEEECCHHHHHHHHHhcC
Q 021642 13 LYVGRLASRTRSRDLEEIFSR-YG---RIRDVDMKR-DFAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~-~G---~v~~~~i~~-~~afV~F~~~~~a~~Al~~ln 65 (309)
.|...+...+.-.+|+++|.. |- .-.++.+.. .-.|+.|.+...+++.+..|.
T Consensus 49 ~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~~F~~~~~~k~vv~~lp 106 (108)
T cd01201 49 SYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSIFFAFPDQNAVKKVVYALP 106 (108)
T ss_pred eccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCceEEEEeCcHHHHHHHHhhcC
Confidence 344556667778889888864 42 223333333 467999999999988886653
No 262
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=24.33 E-value=1.7e+02 Score=28.89 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEE---EECC-HHHHHHHHH--hcCccccCCCc
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFV---EFSD-PRDADDARY--SLNGRDVDGSR 73 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV---~F~~-~~~a~~Al~--~lng~~l~Gr~ 73 (309)
...++.+|+-++...+.|++=+.+|...-.+..+.|++ ||++ +|-+ +......|+ ...+..|.|+.
T Consensus 267 ~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~r-~g~~~~~~~i~~p~~L~~~l~~k~~~~lf~AGQi 338 (433)
T TIGR00137 267 DKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVR-MGVMHRNTFINSPQLLTASLHFKDRQTLFFAGQL 338 (433)
T ss_pred ccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEee-cceEEeeeeeCCHHHhhHHhccCCCCCEEECccc
Confidence 34578899999999999999999999888888888876 3332 3334 244444443 33455555543
No 263
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.21 E-value=83 Score=28.42 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=23.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHH--hcCCee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFS--RYGRIR 38 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~--~~G~v~ 38 (309)
....++|+|||..++..-|..++. .||.+.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccc
Confidence 356788999999999999999887 455443
No 264
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=62 Score=32.52 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=33.2
Q ss_pred CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 45 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 45 ~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.|+++.|++...+.+|+..++|..+.+..+.|+.+..
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 5999999999999999999999999988888877653
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.96 E-value=1.2e+02 Score=30.89 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEE-EEECCHHHHHHHH
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAF-VEFSDPRDADDAR 61 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-~~af-V~F~~~~~a~~Al 61 (309)
.+...||+.+|+..+.++--.+++...-.++.+.|++ +||+ -+|-++.++...|
T Consensus 299 l~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tL 354 (621)
T COG0445 299 LDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTL 354 (621)
T ss_pred CCCceEecCcccccCCHHHHHHHHHhCcccccceeeccceeeeecccChhhcccch
Confidence 3568899999999888877777777777788888876 4663 1233444444444
No 266
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=23.77 E-value=18 Score=35.51 Aligned_cols=24 Identities=33% Similarity=0.847 Sum_probs=20.0
Q ss_pred ccccccCCCCccccccCCCCCCCC
Q 021642 123 KNKCYRCGERGHIERNCQNSPKKL 146 (309)
Q Consensus 123 ~~~c~~cg~~gh~sr~~~~~~~~~ 146 (309)
+..|.+||..+|..++|-+.|++.
T Consensus 112 KGACeNCGAmtHk~KDCmERPRK~ 135 (529)
T KOG2560|consen 112 KGACENCGAMTHKVKDCMERPRKV 135 (529)
T ss_pred hhhhhhhhhhhcchHHHhhcchhh
Confidence 567999999999999998877654
No 267
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=23.71 E-value=2.3e+02 Score=18.90 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEEEEECC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAFVEFSD 53 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-~~afV~F~~ 53 (309)
.+.++||.+-......++|..++..+|......+.. ...+|.+.+
T Consensus 4 ~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~ 49 (80)
T smart00292 4 KGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGS 49 (80)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcC
Confidence 467888877334556788999999999766656554 444444444
No 268
>PRK10905 cell division protein DamX; Validated
Probab=23.66 E-value=1.4e+02 Score=28.16 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=36.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeCC---eE--EEEECCHHHHHHHHHhcCcc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKRD---FA--FVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~---v~~~~i~~~---~a--fV~F~~~~~a~~Al~~lng~ 67 (309)
..++|-|+.+. +++.|+.|..+.|- +.+..+..| |. |=.|.+.++|+.||..|-..
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 45677776654 56778888877653 222223333 32 23788999999999988644
No 269
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=23.46 E-value=2.6e+02 Score=19.46 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHhcC-CeeEEEEe---C--C--eEEEEECC---HHHHHHHHHhcC
Q 021642 21 RTRSRDLEEIFSRYG-RIRDVDMK---R--D--FAFVEFSD---PRDADDARYSLN 65 (309)
Q Consensus 21 ~~te~dL~~~F~~~G-~v~~~~i~---~--~--~afV~F~~---~~~a~~Al~~ln 65 (309)
...-.+|.++|..+| .|..+.-. . + .-||+|.. ...++.+++.|.
T Consensus 10 pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 10 PGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 345678888898887 66666332 1 1 55678774 555666766654
No 270
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.20 E-value=1.1e+02 Score=28.07 Aligned_cols=28 Identities=18% Similarity=-0.013 Sum_probs=22.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCe
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRI 37 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v 37 (309)
.....|+|||+.++..-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3466799999999999999988765444
No 271
>PRK12450 foldase protein PrsA; Reviewed
Probab=23.20 E-value=1.5e+02 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC--cccc
Q 021642 21 RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN--GRDV 69 (309)
Q Consensus 21 ~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~ln--g~~l 69 (309)
.+|+++|+.+|..|-. .+.+ .+|.|.+.+.|+.++..|. |..|
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~----~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA----EIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee----EEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 4799999999998743 2222 3578899999999998885 4444
No 272
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.85 E-value=4.2e+02 Score=21.49 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=31.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEEEEECCHHHHHHHHHhc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-~~afV~F~~~~~a~~Al~~l 64 (309)
-++++|-.-...++..+|.+++-..+.- |.|.- -||.+.-..++++.++++.+
T Consensus 5 vtk~ivlapsa~vsp~elv~~l~~~~~P--vtiKeTCfGaii~G~Ed~v~klveri 58 (142)
T COG4029 5 VTKYIVLAPSAGVSPKELVQKLLELSPP--VTIKETCFGAIIDGPEDEVRKLVERI 58 (142)
T ss_pred ceEEEEEcCccCcChHHHHHHHHhcCCC--eEeeeeeeeeeecCcHHHHHHHHHHH
Confidence 3566665556677888888777666644 22221 25555555666666665543
No 273
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=22.50 E-value=1.5e+02 Score=30.74 Aligned_cols=65 Identities=14% Similarity=0.288 Sum_probs=43.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEE-EEECCHHHHHHHHH--hcCccccCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAF-VEFSDPRDADDARY--SLNGRDVDG 71 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-~~af-V~F~~~~~a~~Al~--~lng~~l~G 71 (309)
......||+.+|...+.++.=.++|...-.+..+.|++ +||. -+|-++......|+ .+.|..|.|
T Consensus 298 g~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~gy~ieyd~i~p~~L~~~Le~k~~~~lf~AG 366 (618)
T PRK05192 298 GLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAG 366 (618)
T ss_pred CCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeecccceeecccChhhcchhheecCCCCeEECc
Confidence 34578899999999999998889999888888888876 3442 12333444444443 234444444
No 274
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=22.41 E-value=97 Score=29.37 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=30.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE------------------eCCeEEEEECCHHHHHHHHH
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM------------------KRDFAFVEFSDPRDADDARY 62 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i------------------~~~~afV~F~~~~~a~~Al~ 62 (309)
.-+||+++-..+..+.|..+-...-+...+.+ .-.|++|.|.++++|..-.+
T Consensus 161 ~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 161 KVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred eEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHH
Confidence 45677777766665555444332222222111 11389999999998887653
No 275
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=22.29 E-value=2.4e+02 Score=18.54 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=24.3
Q ss_pred EEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeC----CeEEEEEC
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKR----DFAFVEFS 52 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~~----~~afV~F~ 52 (309)
|+|..........+|-.+|.++| .|..+.+.. +++++.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLD 46 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEE
Confidence 44544444456778889998887 676665533 45544443
No 276
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=3.5e+02 Score=24.49 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCcEEEEccCCCCC--cHHHHHHHHHhcCC-ee---EEEE-eCCeEEEEEC
Q 021642 8 YGGTRLYVGRLASRT--RSRDLEEIFSRYGR-IR---DVDM-KRDFAFVEFS 52 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~--te~dL~~~F~~~G~-v~---~~~i-~~~~afV~F~ 52 (309)
..+.-|+|.-|..+. |..+|+.+|.+.|. +- .|.+ +...|+|+|.
T Consensus 92 P~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~ 143 (241)
T COG0217 92 PGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVE 143 (241)
T ss_pred CCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEeccEEEEEC
Confidence 456789999997655 67899999998763 21 2322 3335666665
No 277
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=21.71 E-value=2.9e+02 Score=20.77 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=33.0
Q ss_pred EEEccCCCCCcHHHHHHHHH-hcCCeeE--EEEeCCeEEEEECCHHHHHHHHHh
Q 021642 13 LYVGRLASRTRSRDLEEIFS-RYGRIRD--VDMKRDFAFVEFSDPRDADDARYS 63 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~-~~G~v~~--~~i~~~~afV~F~~~~~a~~Al~~ 63 (309)
|++-.||..++-++|.+-+. .|+--.. +.+.-.-.+|+..+.+|.+.||..
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDEGD~iti~sq~DLd~Ai~~ 66 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDDGDMITMGDQDDLDMAIDT 66 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCccccCHHHHHHHHHH
Confidence 44456888898887765553 4543223 333333458888999999999864
No 278
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=21.45 E-value=2e+02 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=12.3
Q ss_pred EEEEccCCCCCcHHHHHH
Q 021642 12 RLYVGRLASRTRSRDLEE 29 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~ 29 (309)
.||||+++.....+.|++
T Consensus 7 ~l~~G~~~~~~~~~~l~~ 24 (138)
T smart00195 7 HLYLGSYSSALNLALLKK 24 (138)
T ss_pred CeEECChhHcCCHHHHHH
Confidence 499999987665444443
No 279
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=21.34 E-value=1.7e+02 Score=27.74 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=6.1
Q ss_pred eEEEEECCHHHHH
Q 021642 46 FAFVEFSDPRDAD 58 (309)
Q Consensus 46 ~afV~F~~~~~a~ 58 (309)
-.||-|.-+.-|.
T Consensus 175 ~v~vry~pe~iAC 187 (367)
T KOG0835|consen 175 DVFVRYSPESIAC 187 (367)
T ss_pred ceeeecCHHHHHH
Confidence 3455555444333
No 280
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=21.33 E-value=71 Score=22.55 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=11.1
Q ss_pred cHHHHHHHHHhcCCeeEE
Q 021642 23 RSRDLEEIFSRYGRIRDV 40 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~ 40 (309)
|--||++++.+||.+.++
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 446899999999976553
No 281
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.28 E-value=1.8e+02 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHHHHHHH----hcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhc
Q 021642 24 SRDLEEIFS----RYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 24 e~dL~~~F~----~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~l 64 (309)
.-+|..+|. .+|-|+.+.|.. ...++.|.+.+++..|+..|
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 456777775 578888887731 26678899999999988765
No 282
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=21.21 E-value=49 Score=30.03 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=37.2
Q ss_pred CCcHHHHHHHHHhcCCee-EEEEeCC---------------eEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 21 RTRSRDLEEIFSRYGRIR-DVDMKRD---------------FAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 21 ~~te~dL~~~F~~~G~v~-~~~i~~~---------------~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.++.+++++.|.+||-+. .|.+++| +++|...-.+....||+.|-.....|-.|.|.
T Consensus 139 ~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 139 AVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp THHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred ccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 346788888899988432 3445443 45566667888889998887777766666654
No 283
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=20.94 E-value=56 Score=26.49 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=17.1
Q ss_pred CCCCCccCCCCCCCCCCCCCCC
Q 021642 100 GSGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 100 g~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
....|..|+ +.||...||..+
T Consensus 105 ~~v~CR~Ck-GdH~T~~CPyKd 125 (128)
T PF12353_consen 105 SKVKCRICK-GDHWTSKCPYKD 125 (128)
T ss_pred ceEEeCCCC-CCcccccCCccc
Confidence 345699997 889999999754
No 284
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=20.75 E-value=24 Score=29.39 Aligned_cols=21 Identities=43% Similarity=1.004 Sum_probs=17.3
Q ss_pred CCCCccCCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
..+|..|-..|||..+|.+..
T Consensus 27 ~~rCQKClq~GHWtYECk~kR 47 (177)
T KOG3116|consen 27 SARCQKCLQAGHWTYECKNKR 47 (177)
T ss_pred chhHHHHHhhccceeeecCce
Confidence 347999999999999998754
No 285
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=20.71 E-value=3.8e+02 Score=20.58 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=12.8
Q ss_pred eEEEEECCHHHHHHHHH
Q 021642 46 FAFVEFSDPRDADDARY 62 (309)
Q Consensus 46 ~afV~F~~~~~a~~Al~ 62 (309)
|.++.|.....+...|+
T Consensus 60 Y~~~~f~~~~~~i~el~ 76 (108)
T PRK00453 60 YVLLNFEAPPAAIAELE 76 (108)
T ss_pred EEEEEEEeCHHHHHHHH
Confidence 77888887777777665
No 286
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.66 E-value=2.9e+02 Score=18.80 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhcC-CeeEEEEeC----CeEE--EEEC--CHHHHHHHHHh
Q 021642 23 RSRDLEEIFSRYG-RIRDVDMKR----DFAF--VEFS--DPRDADDARYS 63 (309)
Q Consensus 23 te~dL~~~F~~~G-~v~~~~i~~----~~af--V~F~--~~~~a~~Al~~ 63 (309)
.-..|.++|.++| .|..+.... ++++ |.+. +.+++.++|..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~ 63 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR 63 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH
Confidence 4567788888887 666664422 3443 4443 44555666543
No 287
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=20.13 E-value=2.4e+02 Score=27.81 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=36.9
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcC----C--eeEEEEe---------C--C---eEEEEECCHHHHHHHHHh
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYG----R--IRDVDMK---------R--D---FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G----~--v~~~~i~---------~--~---~afV~F~~~~~a~~Al~~ 63 (309)
+.+.+.+..|.+.+=-+-++.+-|++++.... . |..+.+. + + .++||..|..++++.|..
T Consensus 91 l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~e 170 (460)
T COG1207 91 LADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKE 170 (460)
T ss_pred hhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcE
Confidence 33445555565554444577888887776542 2 2222321 1 1 678888888888877665
Q ss_pred cCc
Q 021642 64 LNG 66 (309)
Q Consensus 64 lng 66 (309)
+|.
T Consensus 171 iNt 173 (460)
T COG1207 171 INT 173 (460)
T ss_pred Eee
Confidence 553
Done!