Query 021642
Match_columns 309
No_of_seqs 454 out of 2414
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.8 6.5E-19 2.2E-23 170.4 18.7 77 8-84 100-184 (437)
2 2dgu_A Heterogeneous nuclear r 99.8 3.3E-19 1.1E-23 138.4 12.5 80 6-85 7-86 (103)
3 3beg_B Splicing factor, argini 99.8 1.3E-19 4.3E-24 144.0 9.4 73 8-80 14-87 (115)
4 2dnq_A RNA-binding protein 4B; 99.8 7.2E-19 2.5E-23 133.1 11.9 80 6-85 4-83 (90)
5 2dnp_A RNA-binding protein 14; 99.8 5.3E-19 1.8E-23 133.8 10.7 80 5-84 4-83 (90)
6 2dgt_A RNA-binding protein 30; 99.8 8.4E-19 2.9E-23 133.2 11.7 81 5-85 5-85 (92)
7 2kvi_A Nuclear polyadenylated 99.8 4.4E-19 1.5E-23 136.0 9.7 83 2-84 2-85 (96)
8 4fxv_A ELAV-like protein 1; RN 99.8 4.9E-19 1.7E-23 137.0 9.6 74 8-81 17-98 (99)
9 1x4c_A Splicing factor, argini 99.8 1.5E-18 5.1E-23 136.0 12.5 79 7-85 12-96 (108)
10 2cpd_A Apobec-1 stimulating pr 99.8 2.7E-18 9.1E-23 132.2 12.1 80 5-84 10-91 (99)
11 3ex7_B RNA-binding protein 8A; 99.8 1.5E-18 5.2E-23 139.3 10.4 81 5-85 17-105 (126)
12 3r27_A HnRNP L, heterogeneous 99.8 1.9E-18 6.5E-23 133.8 9.2 82 1-82 9-97 (100)
13 2fy1_A RNA-binding motif prote 99.8 8.6E-18 2.9E-22 133.6 13.0 79 6-84 3-88 (116)
14 2dgx_A KIAA0430 protein; RRM d 99.8 4E-18 1.4E-22 130.7 10.7 77 7-83 6-91 (96)
15 2xnq_A Nuclear polyadenylated 99.8 3.4E-18 1.2E-22 131.5 10.2 77 6-82 18-95 (97)
16 1x4a_A Splicing factor, argini 99.8 6.5E-18 2.2E-22 132.3 11.7 80 5-84 17-101 (109)
17 2do4_A Squamous cell carcinoma 99.8 4.9E-18 1.7E-22 130.8 10.8 82 2-83 9-97 (100)
18 1sjq_A Polypyrimidine tract-bi 99.8 3.4E-18 1.2E-22 133.6 9.7 81 5-85 11-95 (105)
19 2cq3_A RNA-binding protein 9; 99.8 8E-18 2.7E-22 130.4 11.8 81 5-85 10-96 (103)
20 1wf1_A RNA-binding protein RAL 99.8 5.3E-18 1.8E-22 133.1 10.9 77 6-82 23-100 (110)
21 2jvr_A Nucleolar protein 3; RN 99.7 2.6E-18 9E-23 135.8 8.9 75 8-82 26-105 (111)
22 1u6f_A Tcubp1, RNA-binding pro 99.7 8.5E-18 2.9E-22 137.2 12.3 80 6-85 38-125 (139)
23 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.5E-18 1.9E-22 141.2 11.2 78 8-85 37-122 (156)
24 2jvo_A Nucleolar protein 3; nu 99.7 3.8E-18 1.3E-22 134.0 9.3 80 5-84 26-105 (108)
25 2cqd_A RNA-binding region cont 99.7 1.7E-17 5.8E-22 131.4 13.2 79 4-83 11-97 (116)
26 4f25_A Polyadenylate-binding p 99.7 3.8E-18 1.3E-22 135.3 9.3 74 9-82 4-83 (115)
27 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4E-22 127.3 11.7 78 8-85 3-88 (95)
28 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.4E-17 4.9E-22 128.9 12.3 79 5-83 10-94 (103)
29 1why_A Hypothetical protein ri 99.7 9.4E-18 3.2E-22 128.6 11.0 80 4-83 11-94 (97)
30 2d9p_A Polyadenylate-binding p 99.7 8.1E-18 2.8E-22 130.3 10.3 79 6-84 11-95 (103)
31 1x5u_A Splicing factor 3B subu 99.7 2.4E-17 8.1E-22 128.0 12.2 81 4-84 9-97 (105)
32 2dgo_A Cytotoxic granule-assoc 99.7 3.4E-17 1.1E-21 129.3 13.1 80 5-84 10-97 (115)
33 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-17 4.5E-22 126.3 10.3 78 7-84 5-88 (92)
34 1x4d_A Matrin 3; structural ge 99.7 4.8E-18 1.6E-22 132.2 8.0 77 6-82 11-92 (102)
35 1whw_A Hypothetical protein ri 99.7 2.7E-17 9.2E-22 126.3 12.0 79 6-84 4-90 (99)
36 1x5s_A Cold-inducible RNA-bind 99.7 2E-17 6.9E-22 127.7 11.2 79 6-84 8-94 (102)
37 2cq0_A Eukaryotic translation 99.7 1.3E-17 4.3E-22 129.2 10.0 79 6-84 11-97 (103)
38 2dnh_A Bruno-like 5, RNA bindi 99.7 2.1E-17 7.2E-22 128.3 11.0 78 7-84 12-99 (105)
39 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4.1E-22 124.0 9.1 73 10-82 1-81 (83)
40 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5.1E-22 127.6 9.9 77 6-83 15-95 (97)
41 2wbr_A GW182, gawky, LD47780P; 99.7 1E-17 3.5E-22 126.0 8.5 73 8-80 5-79 (89)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.7E-17 5.8E-22 123.7 9.7 74 7-80 4-85 (85)
43 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.4E-17 4.8E-22 124.7 9.2 75 8-82 4-86 (87)
44 3s8s_A Histone-lysine N-methyl 99.7 1.5E-17 5.2E-22 131.0 9.8 75 7-81 3-85 (110)
45 1p27_B RNA-binding protein 8A; 99.7 1.7E-17 5.7E-22 129.1 9.9 76 7-82 20-103 (106)
46 4a8x_A RNA-binding protein wit 99.7 2E-17 6.9E-22 124.0 9.9 74 9-82 3-85 (88)
47 2cpj_A Non-POU domain-containi 99.7 2.4E-17 8.2E-22 126.8 10.5 79 6-84 11-91 (99)
48 2cpf_A RNA binding motif prote 99.7 2.2E-17 7.7E-22 126.5 10.3 77 8-84 3-90 (98)
49 2ytc_A PRE-mRNA-splicing facto 99.7 2.5E-17 8.5E-22 122.9 10.1 76 5-80 7-85 (85)
50 2cph_A RNA binding motif prote 99.7 4.1E-17 1.4E-21 127.0 11.7 80 5-84 10-99 (107)
51 1x4g_A Nucleolysin TIAR; struc 99.7 3.2E-17 1.1E-21 128.4 11.1 79 6-84 21-101 (109)
52 2dnm_A SRP46 splicing factor; 99.7 2.3E-17 7.8E-22 127.8 10.1 79 6-84 9-95 (103)
53 2ad9_A Polypyrimidine tract-bi 99.7 1.6E-17 5.5E-22 132.7 9.4 79 6-84 27-109 (119)
54 2hvz_A Splicing factor, argini 99.7 3.8E-17 1.3E-21 126.0 11.3 74 11-84 1-77 (101)
55 1x4h_A RNA-binding protein 28; 99.7 4.3E-17 1.5E-21 127.7 11.8 80 5-84 10-103 (111)
56 1x5t_A Splicing factor 3B subu 99.7 2.1E-17 7E-22 126.2 9.6 77 8-84 3-88 (96)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.5E-17 5E-22 128.5 8.9 80 6-85 8-95 (102)
58 3ulh_A THO complex subunit 4; 99.7 2.1E-17 7.2E-22 128.7 9.4 74 7-80 26-106 (107)
59 2dgs_A DAZ-associated protein 99.7 6.8E-17 2.3E-21 124.2 12.1 78 6-84 6-91 (99)
60 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.2E-22 130.6 8.6 78 5-82 24-107 (109)
61 2cpz_A CUG triplet repeat RNA- 99.7 3.2E-17 1.1E-21 129.6 10.1 79 6-84 21-107 (115)
62 2x1f_A MRNA 3'-END-processing 99.7 2.7E-17 9.3E-22 125.8 9.4 74 9-82 1-82 (96)
63 1wex_A Hypothetical protein (r 99.7 4.5E-17 1.5E-21 127.1 10.8 79 6-84 11-93 (104)
64 2dgp_A Bruno-like 4, RNA bindi 99.7 6.4E-17 2.2E-21 125.8 11.5 79 6-84 9-98 (106)
65 2lxi_A RNA-binding protein 10; 99.7 1.4E-17 4.8E-22 126.6 7.4 76 10-85 1-86 (91)
66 1wi8_A EIF-4B, eukaryotic tran 99.7 4.1E-17 1.4E-21 126.6 10.2 78 6-85 11-97 (104)
67 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 126.3 12.5 78 5-82 10-94 (114)
68 2cqh_A IGF-II mRNA-binding pro 99.7 2.8E-17 9.7E-22 124.9 8.9 78 7-84 5-85 (93)
69 1oo0_B CG8781-PA, drosophila Y 99.7 3.6E-17 1.2E-21 128.2 9.4 77 7-83 23-107 (110)
70 2cqc_A Arginine/serine-rich sp 99.7 4E-17 1.4E-21 124.2 9.4 77 5-81 10-94 (95)
71 2cpe_A RNA-binding protein EWS 99.7 4.1E-17 1.4E-21 128.4 9.5 80 5-84 10-105 (113)
72 2div_A TRNA selenocysteine ass 99.7 7.4E-17 2.5E-21 123.9 10.6 76 7-82 6-94 (99)
73 2dhg_A TRNA selenocysteine ass 99.7 1.3E-16 4.3E-21 123.7 12.0 79 5-83 4-91 (104)
74 2e5h_A Zinc finger CCHC-type a 99.7 4.1E-17 1.4E-21 124.0 9.0 75 6-80 12-94 (94)
75 2cq1_A PTB-like protein L; RRM 99.7 4E-17 1.4E-21 126.8 9.1 79 6-84 11-93 (101)
76 2khc_A Testis-specific RNP-typ 99.7 3E-17 1E-21 130.2 8.1 75 6-80 36-118 (118)
77 2la4_A Nuclear and cytoplasmic 99.7 4.5E-17 1.5E-21 125.7 8.8 75 7-81 24-100 (101)
78 1x5p_A Negative elongation fac 99.7 1.7E-16 5.9E-21 121.6 12.0 78 5-84 10-89 (97)
79 2kxn_B Transformer-2 protein h 99.7 6.1E-17 2.1E-21 131.2 9.7 78 5-82 41-126 (129)
80 2ywk_A Putative RNA-binding pr 99.7 5.2E-17 1.8E-21 123.7 8.7 76 6-81 12-94 (95)
81 1nu4_A U1A RNA binding domain; 99.7 7.6E-17 2.6E-21 123.2 9.6 77 6-82 4-89 (97)
82 2la6_A RNA-binding protein FUS 99.7 1E-16 3.4E-21 123.3 10.2 75 6-80 9-99 (99)
83 2nlw_A Eukaryotic translation 99.7 1.1E-16 3.6E-21 124.8 10.2 77 6-82 11-100 (105)
84 2fc9_A NCL protein; structure 99.7 5.6E-17 1.9E-21 125.1 8.4 79 6-84 11-93 (101)
85 1whx_A Hypothetical protein ri 99.7 7.9E-17 2.7E-21 127.0 9.2 74 9-82 9-84 (111)
86 1s79_A Lupus LA protein; RRM, 99.7 8E-17 2.7E-21 125.4 9.1 77 4-81 5-88 (103)
87 3p5t_L Cleavage and polyadenyl 99.7 2.9E-17 9.8E-22 124.3 6.2 73 11-83 2-84 (90)
88 2cpx_A Hypothetical protein FL 99.7 1.4E-16 4.9E-21 125.6 10.5 81 4-84 19-107 (115)
89 2dh8_A DAZ-associated protein 99.7 1.3E-16 4.4E-21 123.9 9.9 79 5-84 11-97 (105)
90 1x4f_A Matrin 3; structural ge 99.7 3.2E-17 1.1E-21 129.6 6.4 76 7-82 22-102 (112)
91 2a3j_A U1 small nuclear ribonu 99.7 1.9E-16 6.4E-21 128.0 11.1 77 6-82 25-110 (127)
92 2dng_A Eukaryotic translation 99.7 2E-16 6.8E-21 122.5 10.8 77 6-84 11-95 (103)
93 1p1t_A Cleavage stimulation fa 99.7 8.5E-17 2.9E-21 124.5 8.7 75 8-82 6-88 (104)
94 2cqp_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 125.4 6.4 77 6-82 11-95 (98)
95 2lkz_A RNA-binding protein 5; 99.7 3.4E-17 1.2E-21 125.8 6.2 77 5-81 4-94 (95)
96 2dis_A Unnamed protein product 99.7 1.2E-16 4.2E-21 124.8 9.5 77 7-83 5-93 (109)
97 2jrs_A RNA-binding protein 39; 99.7 1.6E-16 5.4E-21 124.6 10.2 77 6-82 22-106 (108)
98 2krb_A Eukaryotic translation 99.7 9E-17 3.1E-21 119.1 8.1 68 10-77 1-81 (81)
99 3ns6_A Eukaryotic translation 99.7 4.7E-17 1.6E-21 125.8 6.5 76 6-81 2-92 (100)
100 2cpi_A CCR4-NOT transcription 99.7 6.4E-17 2.2E-21 127.3 7.3 76 8-83 13-102 (111)
101 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.2E-16 4.2E-21 134.4 9.5 78 7-84 69-154 (165)
102 2kt5_A RNA and export factor-b 99.7 2.3E-16 7.8E-21 126.3 10.6 77 7-83 32-115 (124)
103 3ucg_A Polyadenylate-binding p 99.7 1.9E-16 6.6E-21 118.9 9.5 73 9-82 5-85 (89)
104 3s7r_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 119.0 9.0 75 4-79 5-87 (87)
105 2fc8_A NCL protein; structure 99.7 9.2E-17 3.1E-21 124.0 7.7 79 6-84 11-94 (102)
106 2i2y_A Fusion protein consists 99.7 2E-16 6.7E-21 130.9 10.2 77 6-82 69-148 (150)
107 2cq4_A RNA binding motif prote 99.7 1.2E-16 4.1E-21 126.0 8.0 73 9-82 24-104 (114)
108 2e5g_A U6 snRNA-specific termi 99.7 4.8E-16 1.6E-20 118.4 10.4 75 8-83 6-83 (94)
109 2ek1_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 123.7 5.0 74 7-80 12-93 (95)
110 2dgw_A Probable RNA-binding pr 99.7 4.5E-16 1.5E-20 117.7 10.1 76 6-83 6-88 (91)
111 2jwn_A Embryonic polyadenylate 99.7 2.7E-16 9.1E-21 125.8 9.2 74 10-84 36-117 (124)
112 2e44_A Insulin-like growth fac 99.7 3.7E-16 1.3E-20 119.3 9.5 75 8-82 13-92 (96)
113 2bz2_A Negative elongation fac 99.7 2.9E-16 1E-20 125.7 9.2 78 4-83 33-112 (121)
114 1x4b_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 123.5 9.7 75 9-84 26-108 (116)
115 3lqv_A PRE-mRNA branch site pr 99.7 5.2E-16 1.8E-20 122.5 10.4 76 7-82 5-85 (115)
116 3n9u_C Cleavage and polyadenyl 99.7 3.2E-16 1.1E-20 131.1 9.5 73 9-81 54-136 (156)
117 1wez_A HnRNP H', FTP-3, hetero 99.6 3.4E-16 1.1E-20 121.6 8.6 76 6-83 11-93 (102)
118 2cq2_A Hypothetical protein LO 99.6 2.9E-16 9.9E-21 124.3 8.4 77 7-83 22-107 (114)
119 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.4E-16 4.9E-21 122.9 6.5 74 7-82 16-98 (100)
120 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-16 1.1E-20 119.6 8.2 78 7-84 13-93 (96)
121 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.6E-21 131.5 5.8 76 7-84 43-125 (139)
122 1x4e_A RNA binding motif, sing 99.6 1.3E-16 4.5E-21 119.0 5.7 73 8-80 3-83 (85)
123 2ki2_A SS-DNA binding protein 99.6 1.2E-16 4E-21 120.6 5.5 72 11-83 2-81 (90)
124 2f3j_A RNA and export factor b 99.6 6.5E-16 2.2E-20 131.8 10.7 75 8-82 86-167 (177)
125 2lcw_A RNA-binding protein FUS 99.5 1.2E-17 4.3E-22 132.2 0.0 81 5-85 2-98 (116)
126 2lea_A Serine/arginine-rich sp 99.6 2.3E-16 7.9E-21 128.7 7.4 77 7-83 44-128 (135)
127 2cpy_A RNA-binding protein 12; 99.6 2.7E-16 9.4E-21 124.3 7.4 77 5-82 10-94 (114)
128 2rs2_A Musashi-1, RNA-binding 99.6 6.5E-16 2.2E-20 121.2 9.4 79 4-83 19-105 (109)
129 3q2s_C Cleavage and polyadenyl 99.6 3.6E-16 1.2E-20 138.7 8.9 72 9-80 67-148 (229)
130 2e5i_A Heterogeneous nuclear r 99.6 6.4E-16 2.2E-20 124.3 9.4 72 11-82 26-102 (124)
131 1x5o_A RNA binding motif, sing 99.6 7.3E-16 2.5E-20 121.4 9.6 76 6-81 21-111 (114)
132 2diu_A KIAA0430 protein; struc 99.6 5.6E-16 1.9E-20 117.7 8.5 72 10-83 9-85 (96)
133 1sjr_A Polypyrimidine tract-bi 99.6 7.5E-16 2.6E-20 129.3 10.1 74 9-82 45-124 (164)
134 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.1E-16 2.4E-20 125.5 9.7 74 6-79 59-140 (140)
135 1wg5_A Heterogeneous nuclear r 99.6 7.6E-16 2.6E-20 119.7 9.4 76 6-82 11-94 (104)
136 1wel_A RNA-binding protein 12; 99.6 1.8E-16 6.1E-21 127.2 5.9 74 7-81 22-103 (124)
137 2kn4_A Immunoglobulin G-bindin 99.6 1.5E-15 5E-20 126.4 11.7 76 7-82 67-150 (158)
138 1wg1_A KIAA1579 protein, homol 99.6 3.1E-16 1.1E-20 118.1 6.6 73 9-82 4-78 (88)
139 1fj7_A Nucleolin RBD1, protein 99.6 2.1E-16 7.2E-21 121.8 5.7 77 6-83 13-96 (101)
140 2cqg_A TDP-43, TAR DNA-binding 99.6 2E-15 6.8E-20 116.7 11.2 77 6-84 11-95 (103)
141 2m2b_A RNA-binding protein 10; 99.6 2.8E-16 9.7E-21 127.2 6.6 77 6-83 19-109 (131)
142 2db1_A Heterogeneous nuclear r 99.6 4.3E-16 1.5E-20 124.0 7.5 75 6-81 13-97 (118)
143 2mss_A Protein (musashi1); RNA 99.6 4.2E-16 1.4E-20 113.5 6.8 67 12-79 1-75 (75)
144 3egn_A RNA-binding protein 40; 99.6 5.4E-16 1.9E-20 127.2 7.8 80 3-82 38-130 (143)
145 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 114.3 8.7 70 8-78 4-86 (87)
146 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.1E-16 1.7E-20 113.4 6.0 68 11-79 1-76 (77)
147 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-15 4.9E-20 123.0 8.5 73 10-82 28-106 (130)
148 2hgl_A HNRPF protein, heteroge 99.6 1.3E-15 4.3E-20 124.6 8.1 75 6-81 40-124 (136)
149 2dnn_A RNA-binding protein 12; 99.6 1.3E-15 4.3E-20 119.9 7.6 71 9-81 15-92 (109)
150 2lmi_A GRSF-1, G-rich sequence 99.6 7.6E-16 2.6E-20 120.3 5.9 76 5-81 6-91 (107)
151 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7E-20 131.6 9.2 74 9-82 3-80 (205)
152 3d2w_A TAR DNA-binding protein 99.6 2.2E-15 7.6E-20 114.0 8.0 74 5-82 6-84 (89)
153 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-15 4E-20 111.0 6.1 67 12-79 1-75 (75)
154 1wf0_A TDP-43, TAR DNA-binding 99.6 1.5E-15 5.1E-20 114.1 6.7 75 8-84 3-80 (88)
155 4f02_A Polyadenylate-binding p 99.6 7.9E-15 2.7E-19 128.0 9.7 76 7-82 12-95 (213)
156 2dha_A FLJ20171 protein; RRM d 99.6 4.7E-15 1.6E-19 119.1 7.4 73 8-81 21-104 (123)
157 2xs2_A Deleted in azoospermia- 99.6 2.1E-15 7.3E-20 116.3 5.2 75 6-82 5-86 (102)
158 2hgm_A HNRPF protein, heteroge 99.6 6.7E-15 2.3E-19 118.7 8.2 74 6-81 38-120 (126)
159 4f02_A Polyadenylate-binding p 99.6 8.5E-15 2.9E-19 127.8 9.1 73 9-81 102-180 (213)
160 3u1l_A PRE-mRNA-splicing facto 99.6 8E-15 2.7E-19 130.6 8.9 76 8-83 132-230 (240)
161 3md3_A Nuclear and cytoplasmic 99.5 2.1E-14 7.2E-19 118.8 9.8 75 6-80 83-165 (166)
162 2adc_A Polypyrimidine tract-bi 99.5 2.2E-14 7.4E-19 126.6 10.1 76 7-82 31-110 (229)
163 2qfj_A FBP-interacting repress 99.5 2.5E-14 8.5E-19 123.9 10.3 77 8-84 123-207 (216)
164 1fxl_A Paraneoplastic encephal 99.5 3.6E-14 1.2E-18 117.5 9.8 73 10-82 2-82 (167)
165 2yh0_A Splicing factor U2AF 65 99.5 2.7E-14 9.4E-19 122.0 9.2 76 8-83 112-195 (198)
166 3pgw_A U1-A; protein-RNA compl 99.5 4.4E-14 1.5E-18 127.9 10.8 76 5-80 202-281 (282)
167 1b7f_A Protein (SXL-lethal pro 99.5 2.8E-14 9.5E-19 118.6 8.7 75 9-83 2-84 (168)
168 1qm9_A Polypyrimidine tract-bi 99.5 2.6E-14 8.7E-19 122.7 7.8 74 9-82 2-79 (198)
169 2g4b_A Splicing factor U2AF 65 99.5 5.1E-14 1.8E-18 117.6 9.0 73 7-79 91-171 (172)
170 2qfj_A FBP-interacting repress 99.5 5.9E-14 2E-18 121.5 9.7 73 10-82 28-108 (216)
171 3pgw_A U1-A; protein-RNA compl 99.5 5.7E-14 1.9E-18 127.2 9.9 77 6-82 5-90 (282)
172 2dit_A HIV TAT specific factor 99.5 9.6E-14 3.3E-18 109.2 10.0 79 5-83 10-103 (112)
173 2cjk_A Nuclear polyadenylated 99.5 5.2E-14 1.8E-18 117.0 8.6 73 9-82 86-166 (167)
174 1l3k_A Heterogeneous nuclear r 99.5 6.3E-14 2.2E-18 119.5 9.1 76 8-84 102-185 (196)
175 2adc_A Polypyrimidine tract-bi 99.5 9.8E-14 3.3E-18 122.4 10.2 73 9-81 150-227 (229)
176 1qm9_A Polypyrimidine tract-bi 99.5 8.6E-14 2.9E-18 119.4 9.2 74 8-81 118-196 (198)
177 2dnl_A Cytoplasmic polyadenyla 99.5 4.7E-14 1.6E-18 111.3 7.0 70 7-79 5-85 (114)
178 3md3_A Nuclear and cytoplasmic 99.5 8E-14 2.7E-18 115.3 8.6 73 11-83 1-80 (166)
179 2j8a_A Histone-lysine N-methyl 99.5 6.1E-14 2.1E-18 112.5 7.3 71 11-81 3-95 (136)
180 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.8E-18 118.0 9.4 76 6-82 9-92 (196)
181 3sde_A Paraspeckle component 1 99.5 8.3E-14 2.8E-18 125.3 8.8 74 8-81 20-95 (261)
182 3nmr_A Cugbp ELAV-like family 99.5 1.3E-13 4.3E-18 115.2 9.3 73 8-80 93-175 (175)
183 1b7f_A Protein (SXL-lethal pro 99.5 1.7E-13 5.7E-18 113.9 9.9 73 7-79 86-168 (168)
184 1fxl_A Paraneoplastic encephal 99.5 1.6E-13 5.4E-18 113.6 9.3 72 8-79 86-167 (167)
185 1fje_B Nucleolin RBD12, protei 99.4 8.3E-14 2.8E-18 116.9 6.8 75 8-82 97-174 (175)
186 2pe8_A Splicing factor 45; RRM 99.4 2.4E-13 8.1E-18 106.1 8.5 74 8-81 6-93 (105)
187 2voo_A Lupus LA protein; RNA-b 99.4 2.1E-13 7.2E-18 117.7 8.5 71 10-81 109-186 (193)
188 3nmr_A Cugbp ELAV-like family 99.4 4.7E-13 1.6E-17 111.7 9.4 74 9-82 2-88 (175)
189 3tyt_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 117.3 8.3 71 9-79 122-204 (205)
190 2ghp_A U4/U6 snRNA-associated 99.4 4.8E-13 1.7E-17 121.6 8.8 75 7-82 207-291 (292)
191 2g4b_A Splicing factor U2AF 65 99.4 7.2E-13 2.5E-17 110.6 9.0 73 9-82 3-88 (172)
192 1fje_B Nucleolin RBD12, protei 99.4 1.9E-13 6.4E-18 114.7 5.1 76 6-82 9-91 (175)
193 2yh0_A Splicing factor U2AF 65 99.4 8.8E-13 3E-17 112.5 9.3 73 9-82 3-88 (198)
194 2d9o_A DNAJ (HSP40) homolog, s 99.4 6.5E-12 2.2E-16 97.1 12.0 73 10-84 10-92 (100)
195 2cjk_A Nuclear polyadenylated 99.4 9.4E-13 3.2E-17 109.3 7.6 71 9-81 2-80 (167)
196 3tht_A Alkylated DNA repair pr 99.4 1.2E-12 4.1E-17 122.4 8.5 74 7-80 15-97 (345)
197 3smz_A Protein raver-1, ribonu 99.4 1.2E-12 4.3E-17 118.4 8.4 76 7-82 181-264 (284)
198 2ghp_A U4/U6 snRNA-associated 99.3 1.3E-12 4.4E-17 118.8 7.9 72 8-80 39-116 (292)
199 1owx_A Lupus LA protein, SS-B, 99.3 3.1E-12 1E-16 102.0 8.8 74 7-80 15-94 (121)
200 1jmt_A Splicing factor U2AF 35 99.3 5.4E-13 1.9E-17 103.8 3.6 65 15-79 20-103 (104)
201 3v4m_A Splicing factor U2AF 65 99.3 3.2E-12 1.1E-16 99.6 7.4 74 8-81 3-96 (105)
202 3smz_A Protein raver-1, ribonu 99.3 4.7E-12 1.6E-16 114.6 9.6 75 8-82 93-175 (284)
203 3sde_A Paraspeckle component 1 99.3 6.6E-12 2.2E-16 112.8 8.8 74 9-82 95-179 (261)
204 3ue2_A Poly(U)-binding-splicin 99.3 1.1E-11 3.8E-16 98.6 8.3 73 9-81 19-108 (118)
205 3ts2_A Protein LIN-28 homolog 99.3 5.8E-13 2E-17 110.1 0.5 121 24-144 1-140 (148)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.8E-11 6.2E-16 92.0 8.3 74 9-83 6-87 (91)
207 3s6e_A RNA-binding protein 39; 99.2 5.5E-11 1.9E-15 94.0 8.2 73 8-80 5-91 (114)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 2.3E-10 7.9E-15 86.5 6.4 72 8-80 13-93 (95)
209 3dxb_A Thioredoxin N-terminall 98.6 5.2E-08 1.8E-12 85.0 7.1 59 22-80 141-211 (222)
210 2l9w_A U4/U6 snRNA-associated- 98.5 4.9E-07 1.7E-11 69.8 8.5 71 8-78 19-96 (117)
211 1wey_A Calcipressin 1; structu 98.2 3.4E-06 1.2E-10 64.6 7.1 73 9-81 4-83 (104)
212 2cqf_A RNA-binding protein LIN 98.2 1.6E-06 5.4E-11 60.8 4.6 43 101-143 7-49 (63)
213 2ec7_A GAG polyprotein (PR55GA 98.2 2.6E-06 8.9E-11 56.6 5.4 42 100-142 5-46 (49)
214 2li8_A Protein LIN-28 homolog 98.2 1.7E-06 5.9E-11 62.6 4.6 42 101-142 24-65 (74)
215 2a51_A Nucleocapsid protein; s 98.2 1.7E-06 5.9E-11 54.6 3.9 38 103-141 2-39 (39)
216 2ihx_A Nucleocapsid (NC) prote 98.1 2.1E-06 7.1E-11 59.8 4.5 43 101-143 4-50 (61)
217 1cl4_A Protein (GAG polyprotei 98.1 1E-06 3.6E-11 61.1 2.1 42 102-143 2-50 (60)
218 2bl6_A Nucleocapsid protein P1 98.1 2.9E-06 9.8E-11 52.9 3.7 36 103-141 2-37 (37)
219 2dhx_A Poly (ADP-ribose) polym 98.1 4.1E-05 1.4E-09 58.4 10.4 72 8-80 6-82 (104)
220 1a1t_A Nucleocapsid protein; s 98.0 3.9E-06 1.3E-10 57.1 3.4 41 101-142 12-52 (55)
221 1uw4_A UPF3X; nonsense mediate 97.8 5.9E-05 2E-09 56.6 6.6 61 11-71 2-72 (91)
222 1wwh_A Nucleoporin 35, nucleop 97.7 0.00014 4.7E-09 57.2 7.7 71 6-78 20-93 (119)
223 3nyb_B Protein AIR2; polya RNA 97.4 7.1E-05 2.4E-09 55.2 2.7 39 104-142 27-65 (83)
224 1whv_A Poly(A)-specific ribonu 97.4 0.00055 1.9E-08 51.6 7.5 60 5-64 10-69 (100)
225 2l08_A Regulator of nonsense t 97.3 0.00024 8.3E-09 53.7 4.2 72 9-80 8-94 (97)
226 3ctr_A Poly(A)-specific ribonu 97.0 0.0008 2.7E-08 50.9 4.7 53 12-65 8-60 (101)
227 3p3d_A Nucleoporin 53; structu 96.9 0.0008 2.7E-08 53.6 4.3 70 9-80 6-97 (132)
228 2lli_A Protein AIR2; RNA surve 96.8 0.00087 3E-08 53.0 4.2 41 102-142 43-83 (124)
229 2lli_A Protein AIR2; RNA surve 96.8 0.00097 3.3E-08 52.8 4.4 41 101-141 64-123 (124)
230 1a6b_B Momulv, zinc finger pro 96.8 0.0012 4.1E-08 41.6 3.7 25 97-121 6-30 (40)
231 1dsq_A Nucleic acid binding pr 96.4 0.0019 6.4E-08 36.7 2.2 19 102-120 3-21 (26)
232 1u6p_A GAG polyprotein; MLV, A 96.3 0.0029 1E-07 42.8 3.2 25 97-121 19-43 (56)
233 3pq1_A Poly(A) RNA polymerase; 96.0 0.0034 1.2E-07 60.5 3.5 51 11-62 54-107 (464)
234 3nyb_B Protein AIR2; polya RNA 95.7 0.0036 1.2E-07 46.0 1.7 38 102-142 6-43 (83)
235 2li8_A Protein LIN-28 homolog 95.7 0.0043 1.5E-07 44.5 2.0 33 110-142 2-43 (74)
236 1nc8_A Nucleocapsid protein; H 95.3 0.012 4.1E-07 34.2 2.6 19 102-120 7-25 (29)
237 2ysa_A Retinoblastoma-binding 95.0 0.013 4.4E-07 39.5 2.5 19 101-119 7-25 (55)
238 1a6b_B Momulv, zinc finger pro 94.9 0.016 5.5E-07 36.4 2.5 24 123-146 10-33 (40)
239 2g0c_A ATP-dependent RNA helic 94.7 0.099 3.4E-06 37.1 6.8 68 12-80 2-75 (76)
240 1u6p_A GAG polyprotein; MLV, A 94.4 0.023 7.9E-07 38.4 2.5 24 123-146 23-46 (56)
241 2i2y_A Fusion protein consists 94.3 0.022 7.6E-07 45.7 2.9 37 44-81 13-50 (150)
242 4eyt_A Telomerase associated p 94.1 0.24 8.1E-06 36.6 7.7 57 8-64 10-66 (129)
243 1dsq_A Nucleic acid binding pr 93.6 0.032 1.1E-06 31.4 1.7 19 124-142 3-21 (26)
244 1nc8_A Nucleocapsid protein; H 93.1 0.068 2.3E-06 30.9 2.7 21 123-143 6-26 (29)
245 2kn4_A Immunoglobulin G-bindin 91.7 0.078 2.7E-06 42.7 2.3 26 44-69 13-38 (158)
246 1cl4_A Protein (GAG polyprotei 90.2 0.2 6.9E-06 33.9 2.9 21 101-121 30-50 (60)
247 3d45_A Poly(A)-specific ribonu 89.4 0.68 2.3E-05 45.0 7.1 54 11-65 441-494 (507)
248 2ysa_A Retinoblastoma-binding 88.8 0.17 5.8E-06 33.9 1.6 20 122-141 6-25 (55)
249 2a51_A Nucleocapsid protein; s 88.2 0.29 1E-05 30.1 2.3 19 101-119 21-39 (39)
250 2ihx_A Nucleocapsid (NC) prote 87.3 0.29 9.8E-06 33.4 2.1 21 101-121 30-50 (61)
251 2cqf_A RNA-binding protein LIN 87.2 0.42 1.4E-05 32.8 2.9 21 101-121 29-49 (63)
252 2bl6_A Nucleocapsid protein P1 86.4 0.27 9.2E-06 29.9 1.4 18 102-119 20-37 (37)
253 2ec7_A GAG polyprotein (PR55GA 84.5 0.43 1.5E-05 30.9 1.7 20 101-120 27-46 (49)
254 1a1t_A Nucleocapsid protein; s 84.0 0.48 1.6E-05 31.4 1.9 20 101-120 33-52 (55)
255 3ts2_A Protein LIN-28 homolog 80.5 0.91 3.1E-05 36.7 2.6 21 101-121 119-139 (148)
256 2cu1_A Mitogen-activated prote 75.5 9.8 0.00034 28.4 6.7 63 17-80 23-86 (103)
257 3pgw_S U1-70K; protein-RNA com 70.9 62 0.0021 30.3 13.1 8 54-61 116-123 (437)
258 3fry_A Probable copper-exporti 68.6 14 0.00049 24.6 6.1 54 10-64 6-61 (73)
259 2npt_B Mitogen-activated prote 67.2 9.9 0.00034 28.1 5.0 51 17-67 35-86 (100)
260 2jrh_A Mitogen-activated prote 63.5 12 0.00041 27.3 4.8 63 17-80 19-82 (94)
261 2c60_A Human mitogen-activated 61.7 12 0.0004 28.1 4.6 51 17-67 46-97 (111)
262 4e8u_A Putative uncharacterize 60.4 14 0.00046 30.5 5.3 50 12-61 14-80 (172)
263 3dxs_X Copper-transporting ATP 52.0 42 0.0014 22.0 6.1 54 11-64 4-63 (74)
264 3j21_T 50S ribosomal protein L 48.0 47 0.0016 23.9 5.9 51 14-64 26-83 (86)
265 2kcm_A Cold shock domain famil 47.9 4.4 0.00015 28.6 0.3 20 35-54 3-22 (74)
266 3lpe_A Putative transcription 45.8 62 0.0021 23.3 6.5 45 23-67 21-73 (92)
267 2ofg_X Zinc-transporting ATPas 45.5 85 0.0029 22.8 7.5 54 11-64 10-69 (111)
268 2e5p_A Protein PHF1, PHD finge 45.1 9.3 0.00032 26.3 1.6 20 34-53 27-46 (68)
269 2l3m_A Copper-ION-binding prot 44.3 58 0.002 20.6 6.7 54 11-64 7-66 (71)
270 3pc6_A DNA repair protein XRCC 42.7 35 0.0012 25.5 4.7 37 1-37 1-37 (104)
271 2kt2_A Mercuric reductase; nme 40.9 66 0.0023 20.2 7.3 54 11-64 2-60 (69)
272 4a4j_A Pacszia, cation-transpo 40.7 55 0.0019 21.0 5.1 53 11-63 4-61 (69)
273 3a43_A HYPD, hydrogenase nicke 40.2 30 0.001 27.2 4.1 56 36-112 25-81 (139)
274 2xmw_A PACS-N, cation-transpor 39.6 69 0.0024 20.1 6.5 54 11-64 5-63 (71)
275 2crl_A Copper chaperone for su 39.6 58 0.002 23.3 5.5 53 11-64 21-76 (98)
276 3a0j_A Cold shock protein; OB- 39.1 4.8 0.00017 28.1 -0.6 21 34-54 3-23 (73)
277 1yg0_A COP associated protein; 39.1 67 0.0023 19.8 6.1 53 12-64 4-61 (66)
278 2m0o_A PHD finger protein 1; t 38.7 13 0.00045 26.2 1.6 21 34-54 44-64 (79)
279 3h7h_B Transcription elongatio 37.7 1E+02 0.0034 23.0 6.6 33 36-68 40-75 (106)
280 1vq8_S 50S ribosomal protein L 37.4 68 0.0023 23.0 5.3 48 14-61 25-79 (85)
281 2k5n_A Putative cold-shock pro 36.9 14 0.00049 25.8 1.6 21 34-54 4-24 (74)
282 2exu_A Transcription initiatio 35.9 69 0.0023 26.9 5.9 33 37-69 139-174 (200)
283 3u5e_X 60S ribosomal protein L 35.8 61 0.0021 25.7 5.3 49 15-63 83-138 (142)
284 1cqm_A Ribosomal protein S6; a 35.0 69 0.0024 23.5 5.3 45 18-62 10-76 (101)
285 4a17_R RPL23A, 60S ribosomal p 34.8 61 0.0021 25.9 5.1 47 17-63 93-146 (150)
286 2cfx_A HTH-type transcriptiona 34.7 1.2E+02 0.0042 23.1 7.1 43 24-66 78-124 (144)
287 1q8l_A Copper-transporting ATP 34.6 1E+02 0.0035 20.6 7.7 55 10-64 10-70 (84)
288 2zkr_s 60S ribosomal protein L 33.8 77 0.0026 25.5 5.6 50 14-63 96-152 (156)
289 2g9o_A Copper-transporting ATP 33.5 85 0.0029 21.6 5.5 54 11-64 5-64 (90)
290 1cpz_A Protein (COPZ); copper 32.8 88 0.003 19.3 8.4 54 11-64 2-61 (68)
291 3iz5_X 60S ribosomal protein L 32.7 59 0.002 26.1 4.7 47 17-63 95-148 (152)
292 3aqq_A Calcium-regulated heat 32.6 17 0.0006 29.0 1.6 22 33-54 63-84 (147)
293 1kvi_A Copper-transporting ATP 32.5 1E+02 0.0035 20.0 7.1 55 10-64 9-69 (79)
294 1aw0_A Menkes copper-transport 32.2 79 0.0027 19.9 4.9 54 11-64 5-64 (72)
295 3ulj_A LIN28B, DNA-binding pro 32.1 16 0.00054 26.7 1.2 20 32-51 8-27 (90)
296 1osd_A MERP, hypothetical prot 31.7 97 0.0033 19.4 7.6 54 11-64 5-64 (72)
297 2e5q_A PHD finger protein 19; 31.7 8.8 0.0003 26.0 -0.2 19 35-53 26-44 (63)
298 2okq_A Hypothetical protein YB 31.7 88 0.003 24.7 5.5 36 27-62 50-108 (141)
299 3swz_A Steroid 17-alpha-hydrox 31.4 86 0.0029 28.9 6.6 58 13-72 17-78 (494)
300 2kyz_A Heavy metal binding pro 31.4 75 0.0026 20.0 4.6 52 11-63 3-56 (67)
301 1vd2_A Protein kinase C, IOTA 31.4 55 0.0019 23.7 4.0 51 13-63 17-73 (89)
302 1x60_A Sporulation-specific N- 31.4 99 0.0034 21.0 5.4 64 6-69 5-71 (79)
303 3cjk_B Copper-transporting ATP 30.7 1.1E+02 0.0036 19.6 7.0 54 11-64 4-63 (75)
304 3cam_A Cold-shock domain famil 30.6 21 0.00073 24.3 1.6 20 34-53 3-22 (67)
305 2lss_A Cold shock-like protein 36.6 11 0.00037 26.1 0.0 20 34-53 6-25 (70)
306 2lsl_A Telomerase associated p 36.4 11 0.00037 28.0 0.0 56 9-64 17-97 (137)
307 1c9o_A CSPB, cold-shock protei 30.0 22 0.00076 24.0 1.6 21 34-54 3-23 (66)
308 2j5a_A 30S ribosomal protein S 29.8 68 0.0023 24.0 4.5 45 18-62 16-83 (110)
309 2cg4_A Regulatory protein ASNC 29.8 1.7E+02 0.0059 22.4 7.2 46 17-62 75-124 (152)
310 1yjr_A Copper-transporting ATP 29.7 1.1E+02 0.0037 19.4 7.4 55 9-63 4-64 (75)
311 1y3j_A Copper-transporting ATP 29.5 1E+02 0.0035 19.9 5.1 54 11-64 5-64 (77)
312 1wfq_A UNR protein; beta-barre 29.3 8.5 0.00029 28.1 -0.7 20 33-54 19-38 (89)
313 2od0_A Hypothetical protein VP 29.1 44 0.0015 24.6 3.3 27 22-48 4-30 (105)
314 1p6t_A Potential copper-transp 28.5 1.6E+02 0.0053 22.0 6.7 52 12-63 77-134 (151)
315 1h95_A CSD, Y-box binding prot 28.0 20 0.0007 25.3 1.2 20 34-53 10-29 (79)
316 2cyy_A Putative HTH-type trans 27.7 1.9E+02 0.0065 22.1 7.1 47 17-64 74-124 (151)
317 1mwy_A ZNTA; open-faced beta-s 27.7 1.2E+02 0.0041 19.3 7.9 54 11-64 5-62 (73)
318 3fut_A Dimethyladenosine trans 27.5 53 0.0018 28.7 4.0 28 10-38 110-137 (271)
319 2yh5_A DAPX protein, BAMC; lip 27.2 40 0.0014 26.0 2.9 48 9-56 12-60 (127)
320 3e6i_A CYPIIE1, P450-J, cytoch 26.5 74 0.0025 29.0 5.1 50 13-63 19-71 (476)
321 4bby_A Alkyldihydroxyacetoneph 26.4 36 0.0012 33.8 3.1 48 17-64 350-408 (658)
322 2e1c_A Putative HTH-type trans 26.4 2E+02 0.0068 22.8 7.1 47 17-64 94-144 (171)
323 1g6p_A Cold shock protein TMCS 26.3 28 0.00097 23.5 1.6 19 35-53 3-21 (66)
324 1fvq_A Copper-transporting ATP 26.2 1.2E+02 0.0042 18.9 5.6 54 11-64 4-62 (72)
325 2w7a_A LINE-1 ORF1P; RNA-bindi 26.2 60 0.002 24.1 3.5 32 46-77 64-98 (100)
326 2ew9_A Copper-transporting ATP 25.6 1.4E+02 0.0048 22.1 5.9 54 11-64 82-141 (149)
327 3i2z_B RNA chaperone, negative 25.3 30 0.001 23.8 1.6 22 33-54 6-27 (71)
328 3uzu_A Ribosomal RNA small sub 24.7 30 0.001 30.4 1.9 31 10-40 114-144 (279)
329 2kpo_A Rossmann 2X2 fold prote 24.7 66 0.0023 22.9 3.3 47 22-73 33-80 (110)
330 3vej_A Ubiquitin-like protein 24.2 50 0.0017 20.4 2.2 31 18-64 2-33 (41)
331 1opz_A Potential copper-transp 23.9 1.4E+02 0.0048 18.7 7.5 54 11-64 8-67 (76)
332 2d8m_A DNA-repair protein XRCC 23.5 50 0.0017 25.2 2.8 53 8-61 23-77 (129)
333 1i4w_A Mitochondrial replicati 23.4 65 0.0022 29.4 3.9 23 11-33 143-165 (353)
334 4hcz_A PHD finger protein 1; p 23.4 37 0.0012 22.6 1.6 20 35-54 22-41 (58)
335 1pqs_A Cell division control p 23.3 1E+02 0.0035 21.6 4.1 50 15-64 5-64 (77)
336 2eqj_A Metal-response element- 23.3 36 0.0012 23.3 1.6 19 35-53 32-50 (66)
337 2qif_A Copper chaperone COPZ; 23.3 1.3E+02 0.0045 18.2 6.8 54 11-64 4-63 (69)
338 1i1g_A Transcriptional regulat 23.0 1.5E+02 0.0053 22.1 5.7 43 23-65 76-123 (141)
339 2yko_A LINE-1 ORF1P; RNA-bindi 22.6 1.3E+02 0.0044 25.8 5.3 69 10-78 52-148 (233)
340 1qyr_A KSGA, high level kasuga 22.5 64 0.0022 27.7 3.6 27 11-37 91-117 (252)
341 3tbg_A Cytochrome P450 2D6; mo 22.1 1.1E+02 0.0037 27.8 5.3 56 14-71 20-78 (479)
342 3ftd_A Dimethyladenosine trans 22.0 62 0.0021 27.7 3.4 28 11-38 96-123 (249)
343 2lea_A Serine/arginine-rich sp 21.9 19 0.00065 27.7 0.0 27 46-72 6-32 (135)
344 1q1o_A Cell division control p 21.6 1.8E+02 0.0063 21.3 5.4 50 15-64 26-85 (98)
345 2cvi_A 75AA long hypothetical 21.4 2E+02 0.0068 19.5 7.1 40 23-62 14-57 (83)
346 2nn4_A Hypothetical protein YQ 21.2 35 0.0012 23.8 1.2 18 23-40 4-21 (72)
347 2lfv_A Protein DAMX; cell divi 26.5 20 0.0007 26.9 0.0 54 10-67 25-87 (106)
348 2ij2_A Cytochrome P450 BM3; mo 20.7 98 0.0034 28.5 4.8 47 14-61 13-62 (470)
349 2zbc_A 83AA long hypothetical 20.6 2E+02 0.0068 19.2 6.5 40 23-62 14-57 (83)
350 2k2p_A Uncharacterized protein 20.6 1.4E+02 0.0049 20.4 4.6 54 11-64 24-80 (85)
351 3tqs_A Ribosomal RNA small sub 20.4 36 0.0012 29.4 1.5 28 12-39 98-125 (255)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=6.5e-19 Score=170.44 Aligned_cols=77 Identities=31% Similarity=0.584 Sum_probs=71.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+||++.||+++|++||.+||.|+.|.|+ ++||||+|.+.++|++||+.|||++|+|+.|.|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
++...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 2
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=3.3e-19 Score=138.39 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=74.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 85 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~~ 85 (309)
.....++|||+|||..+++++|+++|.+||.|..|.|+++||||+|.+.++|++||+.|||..|+|+.|.|.+++.....
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999876443
No 3
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=1.3e-19 Score=143.96 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=65.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
...++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|||++|+|+.|.|.+.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3568999999999999999999999999999999988 899999999999999999999999999995554443
No 4
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=133.06 Aligned_cols=80 Identities=24% Similarity=0.547 Sum_probs=75.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 85 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~~ 85 (309)
+..+.++|||+|||..+++++|+++|.+||+|..|.|+++||||+|.+.++|++||+.|||..|+|+.|.|++++.....
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999876543
No 5
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=133.79 Aligned_cols=80 Identities=33% Similarity=0.606 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~ 84 (309)
+.....++|||+|||..+++++|+++|.+||.|..|.|+++||||+|.+.++|+.||+.|||..|+|+.|.|.+++....
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999987643
No 6
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=133.24 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~ 84 (309)
......++|||+|||..+++++|+++|.+||.|..|.|+++||||+|.+.++|++||+.|||..|+|+.|.|++++....
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 021642 85 G 85 (309)
Q Consensus 85 ~ 85 (309)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.4e-19 Score=136.03 Aligned_cols=83 Identities=28% Similarity=0.508 Sum_probs=73.0
Q ss_pred CCCCCCCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 2 PRYDDRYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 2 pr~dd~~~~~~v~V~nL~~-~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
....+..+.++|||+|||+ .+++++|+++|.+||.|..|.|.++||||+|.+.++|+.||+.|||..|.|+.|.|++++
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 2 TEMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -------CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CccccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3445667899999999998 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 021642 81 GGPR 84 (309)
Q Consensus 81 ~~~~ 84 (309)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=136.96 Aligned_cols=74 Identities=30% Similarity=0.554 Sum_probs=69.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
+.+++|||+|||..+++++|+++|.+||+|..|.|++ +||||+|.+.++|++||+.|||..|+|+.|.|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4679999999999999999999999999999999864 39999999999999999999999999999999999
Q ss_pred cC
Q 021642 80 RG 81 (309)
Q Consensus 80 ~~ 81 (309)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 9
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=136.02 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=73.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEEEEECCHHHHHHHHHhcCccccCC-----Cceeeeecc
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAFVEFSDPRDADDARYSLNGRDVDG-----SRIIVEFAR 80 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-~~afV~F~~~~~a~~Al~~lng~~l~G-----r~I~V~~a~ 80 (309)
....++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|||++|+| +.|.|++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 34679999999999999999999999999999999988 799999999999999999999999999 999999998
Q ss_pred CCCCC
Q 021642 81 GGPRG 85 (309)
Q Consensus 81 ~~~~~ 85 (309)
.....
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 10
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=132.21 Aligned_cols=80 Identities=36% Similarity=0.484 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhc--CCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRY--GRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~--G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
+.....++|||+|||..+++++|+++|.+| |.|..|.+.++||||+|.+.++|++||..|||..|+|+.|.|.+++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 344567999999999999999999999999 999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 021642 83 PR 84 (309)
Q Consensus 83 ~~ 84 (309)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 11
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.5e-18 Score=139.31 Aligned_cols=81 Identities=23% Similarity=0.464 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.....+++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||.+|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344567899999999999999999999999999999996 459999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 021642 77 EFARGGPRG 85 (309)
Q Consensus 77 ~~a~~~~~~ 85 (309)
++++.....
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999875443
No 12
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=133.79 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=69.7
Q ss_pred CCCCCCC---CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccc--cCCCc
Q 021642 1 MPRYDDR---YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRD--VDGSR 73 (309)
Q Consensus 1 ~pr~dd~---~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~--l~Gr~ 73 (309)
|-.|||. .++.+|||+|||+.+++++|+++|.+||+|+.|.|+ ++||||+|++.++|..||+.|++.. |.|+.
T Consensus 9 ~~~~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 9 MENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --------CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred hhcccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 4456654 467899999999999999999999999999999997 5799999999999999999999875 78999
Q ss_pred eeeeeccCC
Q 021642 74 IIVEFARGG 82 (309)
Q Consensus 74 I~V~~a~~~ 82 (309)
|.|+|++.+
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999999854
No 13
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=133.57 Aligned_cols=79 Identities=30% Similarity=0.549 Sum_probs=73.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456679999999999999999999999999999999975 6999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021642 79 ARGGPR 84 (309)
Q Consensus 79 a~~~~~ 84 (309)
++....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987544
No 14
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=130.73 Aligned_cols=77 Identities=26% Similarity=0.438 Sum_probs=72.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~----~~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
..++++|||+|||..+++++|+ ++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567999999999999999999 999999999999998 6799999999999999999999999999999999
Q ss_pred eccCCC
Q 021642 78 FARGGP 83 (309)
Q Consensus 78 ~a~~~~ 83 (309)
++++..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 998654
No 15
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=3.4e-18 Score=131.54 Aligned_cols=77 Identities=29% Similarity=0.521 Sum_probs=72.6
Q ss_pred CCCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 6 DRYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 6 d~~~~~~v~V~nL~~-~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
....+++|||+||+. .+++++|+++|.+||.|..|.|.++||||+|.+.++|++||+.|||..|+|+.|.|++++..
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 445789999999998 99999999999999999999999999999999999999999999999999999999999864
No 16
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.5e-18 Score=132.29 Aligned_cols=80 Identities=50% Similarity=0.907 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456779999999999999999999999999999999964 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
+....
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87644
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=130.83 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=75.3
Q ss_pred CCCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 2 PRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 2 pr~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
+++.+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3456667889999999999999999999999999999999964 599999999999999999999999999999
Q ss_pred eeeeccCCC
Q 021642 75 IVEFARGGP 83 (309)
Q Consensus 75 ~V~~a~~~~ 83 (309)
.|.++++.+
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998754
No 18
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=133.59 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcC--ccccCCCceeeeecc
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFAR 80 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~ln--g~~l~Gr~I~V~~a~ 80 (309)
......++|||+|||+.+++++|+++|.+||+|+.|.|++ +||||+|++.++|+.||+.|+ +.+|+|+.|.|.+++
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 4567789999999999999999999999999999999985 699999999999999999876 478999999999998
Q ss_pred CCCCC
Q 021642 81 GGPRG 85 (309)
Q Consensus 81 ~~~~~ 85 (309)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76443
No 19
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=130.35 Aligned_cols=81 Identities=35% Similarity=0.569 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
+.....++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||+.|+|+.|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456678999999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021642 79 ARGGPRG 85 (309)
Q Consensus 79 a~~~~~~ 85 (309)
++.....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 20
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=5.3e-18 Score=133.12 Aligned_cols=77 Identities=30% Similarity=0.593 Sum_probs=72.5
Q ss_pred CCCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 6 DRYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~-~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
.....++|||+||+.. +++++|+++|.+||.|..|.|.++||||+|.+.++|+.||+.|||..|+|+.|.|++++..
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3445689999999999 9999999999999999999999999999999999999999999999999999999999854
No 21
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.6e-18 Score=135.77 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe----CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
...++|||+|||+.+++++|+++|.+|| +|..+.|. ++||||+|.+.++|++||+.|||.+|+|+.|.|++++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999 99999995 579999999999999999999999999999999998754
No 22
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=137.21 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=73.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+||+..+++++|+++|..||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567999999999999999999999999999999986 3499999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021642 78 FARGGPRG 85 (309)
Q Consensus 78 ~a~~~~~~ 85 (309)
+++.....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 23
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=5.5e-18 Score=141.20 Aligned_cols=78 Identities=32% Similarity=0.503 Sum_probs=71.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.||++.|+|+.|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999953 49999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021642 80 RGGPRG 85 (309)
Q Consensus 80 ~~~~~~ 85 (309)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 875443
No 24
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=3.8e-18 Score=134.00 Aligned_cols=80 Identities=25% Similarity=0.512 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~ 84 (309)
++....++|||+||+..+++++|+++|.+||.|..|.|+++||||+|.+.++|++||+.|||..|+|+.|.|++++..+.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999987543
No 25
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=131.36 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
..+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|++ +|+|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34566789999999999999999999999999999999964 4999999999999999999998 89999999
Q ss_pred eeeccCCC
Q 021642 76 VEFARGGP 83 (309)
Q Consensus 76 V~~a~~~~ 83 (309)
|+++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997643
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=3.8e-18 Score=135.33 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||++|+|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 568999999999999999999999999999999863 59999999999999999999999999999999998864
No 27
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=127.30 Aligned_cols=78 Identities=29% Similarity=0.491 Sum_probs=72.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.+.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4679999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021642 80 RGGPRG 85 (309)
Q Consensus 80 ~~~~~~ 85 (309)
+.....
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 28
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=128.92 Aligned_cols=79 Identities=30% Similarity=0.486 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3556789999999999999999999999999999999975 6999999999999999999999999999999999
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
++...
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98754
No 29
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=128.63 Aligned_cols=80 Identities=33% Similarity=0.598 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCccccC--CCceeeeec
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVD--GSRIIVEFA 79 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l~--Gr~I~V~~a 79 (309)
+......++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+ |+.|.|+++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 44556789999999999999999999999999999999985 49999999999999999999999999 999999999
Q ss_pred cCCC
Q 021642 80 RGGP 83 (309)
Q Consensus 80 ~~~~ 83 (309)
++.+
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=130.30 Aligned_cols=79 Identities=32% Similarity=0.506 Sum_probs=73.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
+....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999997 359999999999999999999999999999999999
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
+....
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87644
No 31
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=128.02 Aligned_cols=81 Identities=27% Similarity=0.379 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
..+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34566789999999999999999999999999999999864 4999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 021642 76 VEFARGGPR 84 (309)
Q Consensus 76 V~~a~~~~~ 84 (309)
|.+++....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987644
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=3.4e-17 Score=129.34 Aligned_cols=80 Identities=26% Similarity=0.527 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||+.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3556789999999999999999999999999999999964 49999999999999999999999999999999
Q ss_pred eeccCCCC
Q 021642 77 EFARGGPR 84 (309)
Q Consensus 77 ~~a~~~~~ 84 (309)
.+++....
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987644
No 33
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.3e-17 Score=126.27 Aligned_cols=78 Identities=24% Similarity=0.383 Sum_probs=72.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45679999999999999999999999999999999864 699999999999999999999999999999999998
Q ss_pred CCCC
Q 021642 81 GGPR 84 (309)
Q Consensus 81 ~~~~ 84 (309)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 34
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-18 Score=132.24 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=70.5
Q ss_pred CCCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCcc--ccCCCceeeeecc
Q 021642 6 DRYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFAR 80 (309)
Q Consensus 6 d~~~~~~v~V~nL~~-~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~--~l~Gr~I~V~~a~ 80 (309)
...++++|||+|||+ .+++++|+++|.+||+|+.|.|++ +||||+|++.++|+.||+.||+. +|.|+.|.|++++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 345789999999999 999999999999999999999986 69999999999999999998864 5999999999998
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 91 ~~ 92 (102)
T 1x4d_A 91 KY 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=126.35 Aligned_cols=79 Identities=29% Similarity=0.437 Sum_probs=73.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999853 599999999999999999999999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987644
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=127.74 Aligned_cols=79 Identities=37% Similarity=0.620 Sum_probs=72.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445779999999999999999999999999999999964 499999999999999999999999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987644
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=129.23 Aligned_cols=79 Identities=28% Similarity=0.446 Sum_probs=73.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||+.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 556789999999999999999999999999999999964 399999999999999999999999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.1e-17 Score=128.32 Aligned_cols=78 Identities=28% Similarity=0.462 Sum_probs=72.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCC---Cceee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDG---SRIIV 76 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~G---r~I~V 76 (309)
....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|.| +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 45689999999999999999999999999999999974 599999999999999999999999998 99999
Q ss_pred eeccCCCC
Q 021642 77 EFARGGPR 84 (309)
Q Consensus 77 ~~a~~~~~ 84 (309)
.+++....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987643
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.2e-17 Score=123.98 Aligned_cols=73 Identities=25% Similarity=0.452 Sum_probs=68.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
+++|||+|||..+++++|+++|.+||.|..+.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4789999999999999999999999999999986 34999999999999999999999999999999999986
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=127.56 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=69.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
+....++|||+|||..+++++|+++|.+||.|. +.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|.++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 445689999999999999999999999999996 5554 57999999999999999999999999999999999986
Q ss_pred CC
Q 021642 82 GP 83 (309)
Q Consensus 82 ~~ 83 (309)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1e-17 Score=126.01 Aligned_cols=73 Identities=16% Similarity=0.313 Sum_probs=69.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
....-|||+||++.+++++|+++|.+||+|..+.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999885 6899999999999999999999999999999999985
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=1.7e-17 Score=123.70 Aligned_cols=74 Identities=35% Similarity=0.524 Sum_probs=69.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..+.++|||+|||..+++++|+++|.+||.|..+.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567999999999999999999999999999999884 46999999999999999999999999999999999
Q ss_pred cc
Q 021642 79 AR 80 (309)
Q Consensus 79 a~ 80 (309)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=124.69 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=68.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=131.04 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=70.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..+.++|||+||++.+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||++|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999863 4999999999999999999999999999999999
Q ss_pred ccC
Q 021642 79 ARG 81 (309)
Q Consensus 79 a~~ 81 (309)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=129.10 Aligned_cols=76 Identities=25% Similarity=0.510 Sum_probs=70.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
...+++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3567899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
++..
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9865
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=123.96 Aligned_cols=74 Identities=32% Similarity=0.637 Sum_probs=69.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE---------eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i---------~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
..++|||+|||..+++++|+++|.+||.|..+.| .++||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999988 4679999999999999999999999999999999999
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 47
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=126.82 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=73.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|++ +||||+|.+.++|++||+.|||..|+|+.|.|.+++...
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 445678999999999999999999999999999999986 799999999999999999999999999999999998754
Q ss_pred C
Q 021642 84 R 84 (309)
Q Consensus 84 ~ 84 (309)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=126.55 Aligned_cols=77 Identities=29% Similarity=0.578 Sum_probs=71.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.+.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999998862 49999999999999999999999999999999
Q ss_pred eeccCCCC
Q 021642 77 EFARGGPR 84 (309)
Q Consensus 77 ~~a~~~~~ 84 (309)
.+++....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987543
No 49
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=122.89 Aligned_cols=76 Identities=30% Similarity=0.485 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhc-CccccCCCceeeeecc
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFAR 80 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~l-ng~~l~Gr~I~V~~a~ 80 (309)
.+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||..| ||..|+|+.|.|++++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999999999999999999999999999976 79999999999999999989 9999999999999975
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=126.99 Aligned_cols=80 Identities=24% Similarity=0.530 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---------CeEEEEECCHHHHHHHHHhc-CccccCCCce
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---------DFAFVEFSDPRDADDARYSL-NGRDVDGSRI 74 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---------~~afV~F~~~~~a~~Al~~l-ng~~l~Gr~I 74 (309)
.+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.| |+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3556789999999999999999999999999999999853 49999999999999999999 9999999999
Q ss_pred eeeeccCCCC
Q 021642 75 IVEFARGGPR 84 (309)
Q Consensus 75 ~V~~a~~~~~ 84 (309)
.|.+++....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987643
No 51
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=128.38 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=73.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||..|||..|+|+.|.|.+++..+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 345679999999999999999999999999999999974 799999999999999999999999999999999998764
Q ss_pred C
Q 021642 84 R 84 (309)
Q Consensus 84 ~ 84 (309)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=127.76 Aligned_cols=79 Identities=43% Similarity=0.697 Sum_probs=72.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+..+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 456689999999999999999999999999999999863 599999999999999999999999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9986543
No 53
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=132.70 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCc--cccCCCceeeeeccC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARG 81 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng--~~l~Gr~I~V~~a~~ 81 (309)
...++++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|++.++|++||+.|++ .+|.|+.|.|++++.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 345679999999999999999999999999999999984 7999999999999999998885 589999999999987
Q ss_pred CCC
Q 021642 82 GPR 84 (309)
Q Consensus 82 ~~~ 84 (309)
+..
T Consensus 107 k~~ 109 (119)
T 2ad9_A 107 KEL 109 (119)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 54
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=126.05 Aligned_cols=74 Identities=47% Similarity=0.795 Sum_probs=69.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~ 84 (309)
++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|++++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 689999999999999999999999999999996 56999999999999999999999999999999999987654
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=127.68 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcC------ccccC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLN------GRDVD 70 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~ln------g~~l~ 70 (309)
.+....++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 355678999999999999999999999999999999996 4599999999999999999999 99999
Q ss_pred CCceeeeeccCCCC
Q 021642 71 GSRIIVEFARGGPR 84 (309)
Q Consensus 71 Gr~I~V~~a~~~~~ 84 (309)
|+.|.|.++.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999986543
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=126.17 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=71.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~-~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.++++|||+|||..+++++|+++|.+||.|..+ .|+. +||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999988 8854 4999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021642 79 ARGGPR 84 (309)
Q Consensus 79 a~~~~~ 84 (309)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987644
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=128.51 Aligned_cols=80 Identities=33% Similarity=0.433 Sum_probs=73.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577999999999999999999999999999999985 3599999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021642 78 FARGGPRG 85 (309)
Q Consensus 78 ~a~~~~~~ 85 (309)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.1e-17 Score=128.75 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=69.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
....++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3567999999999999999999999999999999987 459999999999999999999999999999999998
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-17 Score=124.16 Aligned_cols=78 Identities=24% Similarity=0.478 Sum_probs=71.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45678999999999999999999999999999999995 3599999999999999997 99999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987644
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=130.56 Aligned_cols=78 Identities=36% Similarity=0.618 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
++....++|||+||+..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 455678999999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
++.+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9864
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=3.2e-17 Score=129.56 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=72.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||+.|+|+.|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445679999999999999999999999999999999864 399999999999999999999999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987643
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=2.7e-17 Score=125.78 Aligned_cols=74 Identities=19% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
++++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999986 3599999999999999999999999999999999998
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 63
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=127.14 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCcc--ccCCCceeeeeccC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFARG 81 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~--~l~Gr~I~V~~a~~ 81 (309)
...++.+|||+|||+.+++++|+++|.+||+|..|.|++ +||||+|.+.++|++||+.|++. +|.|+.|.|++++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 446689999999999999999999999999999999874 79999999999999999988764 59999999999986
Q ss_pred CCC
Q 021642 82 GPR 84 (309)
Q Consensus 82 ~~~ 84 (309)
+..
T Consensus 91 ~~~ 93 (104)
T 1wex_A 91 KRI 93 (104)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=6.4e-17 Score=125.75 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCcccc---CCCce
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDV---DGSRI 74 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l---~Gr~I 74 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..| .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456789999999999999999999999999999999964 5999999999999999999999987 89999
Q ss_pred eeeeccCCCC
Q 021642 75 IVEFARGGPR 84 (309)
Q Consensus 75 ~V~~a~~~~~ 84 (309)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987544
No 65
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=126.62 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=68.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeC--------CeEEEEECCHHHHHHHHHhc-CccccCCCceeeeec
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKR--------DFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~~--------~~afV~F~~~~~a~~Al~~l-ng~~l~Gr~I~V~~a 79 (309)
+++|||+|||..+|+++|+++|.+|| +|..|.|++ +||||+|.+.++|++||+.| ++..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 899998853 59999999999999999887 567899999999999
Q ss_pred cCCCCC
Q 021642 80 RGGPRG 85 (309)
Q Consensus 80 ~~~~~~ 85 (309)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=126.63 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.....++|||+|||..+++++|+++|.+|| |..|.|+ ++||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 9999986 349999999999999999 99999999999999
Q ss_pred eeccCCCCC
Q 021642 77 EFARGGPRG 85 (309)
Q Consensus 77 ~~a~~~~~~ 85 (309)
++++.....
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876443
No 67
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=126.26 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
......++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||+.|+|+.|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4556789999999999999999999999999999999864 499999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99754
No 68
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=124.86 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=70.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEE-eCCeEEEEECCHHHHHHHHHhcCc-cccCCCceeeeeccCCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDM-KRDFAFVEFSDPRDADDARYSLNG-RDVDGSRIIVEFARGGP 83 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~-v~~~~i-~~~~afV~F~~~~~a~~Al~~lng-~~l~Gr~I~V~~a~~~~ 83 (309)
....++|||+|||..+++++|+++|.+||. |..+.| .++||||+|.+.++|++||+.||| ..|+|+.|.|++++...
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 456789999999999999999999999999 665555 468999999999999999999999 99999999999998754
Q ss_pred C
Q 021642 84 R 84 (309)
Q Consensus 84 ~ 84 (309)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=3.6e-17 Score=128.17 Aligned_cols=77 Identities=25% Similarity=0.502 Sum_probs=71.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
++..+
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98653
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=124.19 Aligned_cols=77 Identities=39% Similarity=0.509 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3556779999999999999999999999999999999863 49999999999999999999999999999999
Q ss_pred eeccC
Q 021642 77 EFARG 81 (309)
Q Consensus 77 ~~a~~ 81 (309)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 71
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=128.42 Aligned_cols=80 Identities=28% Similarity=0.465 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCee--------EEEEeC--------CeEEEEECCHHHHHHHHHhcCccc
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIR--------DVDMKR--------DFAFVEFSDPRDADDARYSLNGRD 68 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~--------~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~ 68 (309)
.+....++|||+|||..+++++|+++|.+||.|. .|.|+. +||||+|.+.++|++||+.|||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 577753 499999999999999999999999
Q ss_pred cCCCceeeeeccCCCC
Q 021642 69 VDGSRIIVEFARGGPR 84 (309)
Q Consensus 69 l~Gr~I~V~~a~~~~~ 84 (309)
|+|+.|.|.+++....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987644
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=123.86 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCee-EEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCc----
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIR-DVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSR---- 73 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~-~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~---- 73 (309)
....++|||+|||..+++++|+++|.+||+|. .|.|+. +||||+|.+.++|++||+.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 998863 49999999999999999999999999999
Q ss_pred eeeeeccCC
Q 021642 74 IIVEFARGG 82 (309)
Q Consensus 74 I~V~~a~~~ 82 (309)
|.|.+++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999864
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=123.66 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHh-cCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccc-cCCCcee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSR-YGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRD-VDGSRII 75 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~-~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~-l~Gr~I~ 75 (309)
.+....++|||+|||..+++++|+++|.+ ||.|..|.|+. +||||+|.+.++|++||+.|||.. |+|+.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 35567899999999999999999999999 99999999963 599999999999999999999999 9999999
Q ss_pred eeeccCCC
Q 021642 76 VEFARGGP 83 (309)
Q Consensus 76 V~~a~~~~ 83 (309)
|.++....
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99997654
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=124.03 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=69.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345679999999999999999999999999999999964 499999999999999999999999999999999
Q ss_pred ecc
Q 021642 78 FAR 80 (309)
Q Consensus 78 ~a~ 80 (309)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 75
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=126.76 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhc--CccccCCCceeeeeccC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARG 81 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~l--ng~~l~Gr~I~V~~a~~ 81 (309)
...++++|||+|||+.+++++|+++|.+||+|..|.|++ +||||+|.+.++|+.||+.| ++.+|.|+.|.|++++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 345678999999999999999999999999999999975 69999999999999999976 56789999999999986
Q ss_pred CCC
Q 021642 82 GPR 84 (309)
Q Consensus 82 ~~~ 84 (309)
+..
T Consensus 91 ~~~ 93 (101)
T 2cq1_A 91 KEL 93 (101)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 76
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3e-17 Score=130.22 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=69.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567999999999999999999999999999999996 3599999999999999999999999999999999
Q ss_pred ecc
Q 021642 78 FAR 80 (309)
Q Consensus 78 ~a~ 80 (309)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 77
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.5e-17 Score=125.65 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
....++|||+||+..+++++|+++|.+||.|..|.|. ++||||+|.+.++|+.||..|||..|+|+.|.|.+++.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3457899999999999999999999999999999996 57999999999999999999999999999999999875
No 78
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=121.62 Aligned_cols=78 Identities=33% Similarity=0.471 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
......++|||+|| .+++++|+++|.+||+|..|.|. ++||||+|.+.++|++||+.|||..|+|+.|.|.+++..
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 34457799999996 89999999999999999999987 579999999999999999999999999999999999876
Q ss_pred CC
Q 021642 83 PR 84 (309)
Q Consensus 83 ~~ 84 (309)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=6.1e-17 Score=131.15 Aligned_cols=78 Identities=40% Similarity=0.548 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.+..+.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4556789999999999999999999999999999999963 49999999999999999999999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
++++..
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 999864
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=123.67 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345679999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred ccC
Q 021642 79 ARG 81 (309)
Q Consensus 79 a~~ 81 (309)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 873
No 81
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=7.6e-17 Score=123.24 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~----~~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
+..++++|||+|||..+++++|+ ++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34578999999999999999999 999999999999986 579999999999999999999999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
++++..
T Consensus 84 ~~a~~~ 89 (97)
T 1nu4_A 84 QYAKTD 89 (97)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 999865
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=123.31 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=69.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEeC--------CeEEEEECCHHHHHHHHHhcCcccc
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMKR--------DFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--------~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.....++|||+||+..+++++|+++|.+||.|.. +.|+. +||||+|.+.++|+.||+.|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999999998 88853 4999999999999999999999999
Q ss_pred CCCceeeeecc
Q 021642 70 DGSRIIVEFAR 80 (309)
Q Consensus 70 ~Gr~I~V~~a~ 80 (309)
+|+.|.|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=124.80 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=70.6
Q ss_pred CCCCCcEEEEccCCCCC------cHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCC-
Q 021642 6 DRYGGTRLYVGRLASRT------RSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGS- 72 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~------te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr- 72 (309)
+....++|||+|||..+ ++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||..|||..|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 889999999999999999987 47999999999999999999999999998
Q ss_pred ceeeeeccCC
Q 021642 73 RIIVEFARGG 82 (309)
Q Consensus 73 ~I~V~~a~~~ 82 (309)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=125.09 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=69.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE----eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM----KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i----~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.....++|||+|||..+++++|+++|.+||.|.-+.. .++||||+|.+.++|++||+.|||+.|+|+.|.|++++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4457899999999999999999999999998843322 246999999999999999999999999999999999987
Q ss_pred CCC
Q 021642 82 GPR 84 (309)
Q Consensus 82 ~~~ 84 (309)
...
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 85
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=126.96 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=69.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 46899999999999999999999999999999985 469999999999999999999999999999999999854
No 86
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8e-17 Score=125.45 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=70.3
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
+.+.....+|||+|||..+++++|+++|.+||+|..|.|+. |||||+|.+.++|+.||. |||..|+|+.|.|
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 34556779999999999999999999999999999999964 699999999999999997 9999999999999
Q ss_pred eeccC
Q 021642 77 EFARG 81 (309)
Q Consensus 77 ~~a~~ 81 (309)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98753
No 87
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=2.9e-17 Score=124.34 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=63.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcC--CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G--~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.+|||+||++.+++++|+++|.+|| +|..+.|+. +||||+|.+.++|++||+.|||.+|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999998864 399999999999999999999999999999999998
Q ss_pred CCC
Q 021642 81 GGP 83 (309)
Q Consensus 81 ~~~ 83 (309)
+.+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 88
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=125.58 Aligned_cols=81 Identities=27% Similarity=0.445 Sum_probs=71.9
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCe----eEEEEe----CCeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI----RDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v----~~~~i~----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
+......++|||+|||..+++++|+++|.+||.| ..+.+. ++||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3344567999999999999999999999999998 566664 46999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 021642 76 VEFARGGPR 84 (309)
Q Consensus 76 V~~a~~~~~ 84 (309)
|.+++....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999987644
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=123.93 Aligned_cols=79 Identities=27% Similarity=0.370 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
.+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+. |++.|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999865 3999999999999999988 999999999999
Q ss_pred eeccCCCC
Q 021642 77 EFARGGPR 84 (309)
Q Consensus 77 ~~a~~~~~ 84 (309)
.++++...
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987644
No 90
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-17 Score=129.57 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCc--cccCCCceeeeeccC
Q 021642 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARG 81 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~-~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng--~~l~Gr~I~V~~a~~ 81 (309)
..++++|||+|||+. +++++|+++|.+||+|..|.|++ +||||+|++.++|+.||+.||+ .+|.|+.|.|++++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456899999999998 99999999999999999999975 7999999999999999998864 569999999999986
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
.
T Consensus 102 ~ 102 (112)
T 1x4f_A 102 Y 102 (112)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=128.03 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=70.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~----~~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
+..++++|||+||++.+++++|+ ++|.+||+|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 44567899999999999999876 699999999999885 369999999999999999999999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.+++..
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999864
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2e-16 Score=122.50 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=70.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+|| |..|.|+. +||||+|.+.++|++|| .|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345679999999999999999999999997 99999863 49999999999999999 999999999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
+++....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987644
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=124.53 Aligned_cols=75 Identities=25% Similarity=0.463 Sum_probs=69.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999986 359999999999999999999999999999999999
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 864
No 94
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=125.36 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=68.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||.|..+.++ ++||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567999999999999999999999999999765443 3599999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98753
No 95
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=125.78 Aligned_cols=77 Identities=23% Similarity=0.385 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCC--eeEEEEeC--------CeEEEEECCHHHHHHHHHhcCcc----ccC
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGR--IRDVDMKR--------DFAFVEFSDPRDADDARYSLNGR----DVD 70 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~--v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~----~l~ 70 (309)
.......+|||+|||+.+|+++|+++|.+||. |..|.|++ |||||+|.+.++|++||+.|||. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 35667899999999999999999999999995 66787753 59999999999999999999997 489
Q ss_pred CCceeeeeccC
Q 021642 71 GSRIIVEFARG 81 (309)
Q Consensus 71 Gr~I~V~~a~~ 81 (309)
|+.|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=124.79 Aligned_cols=77 Identities=29% Similarity=0.430 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEEe---------CCeEEEEECCHHHHHHHHHhcC--ccccCCCce
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDMK---------RDFAFVEFSDPRDADDARYSLN--GRDVDGSRI 74 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~-v~~~~i~---------~~~afV~F~~~~~a~~Al~~ln--g~~l~Gr~I 74 (309)
..+.++|||+|||..+++++|+++|.+||. |..|.|+ ++||||+|.+.++|+.||+.|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346799999999999999999999999998 9999987 3599999999999999999996 589999999
Q ss_pred eeeeccCCC
Q 021642 75 IVEFARGGP 83 (309)
Q Consensus 75 ~V~~a~~~~ 83 (309)
.|.++++..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 97
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=124.65 Aligned_cols=77 Identities=31% Similarity=0.496 Sum_probs=71.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
...+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456779999999999999999999999999999999863 499999999999999999999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+++.+
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99864
No 98
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=9e-17 Score=119.09 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=63.3
Q ss_pred CcEEEEccCCCCC------cHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCC-ceee
Q 021642 10 GTRLYVGRLASRT------RSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIV 76 (309)
Q Consensus 10 ~~~v~V~nL~~~~------te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr-~I~V 76 (309)
+++|||+|||..+ ++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999986 47999999999999999999999999999 8887
Q ss_pred e
Q 021642 77 E 77 (309)
Q Consensus 77 ~ 77 (309)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 99
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=4.7e-17 Score=125.75 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=70.2
Q ss_pred CCCCCcEEEEccCCC------CCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 6 DRYGGTRLYVGRLAS------RTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 6 d~~~~~~v~V~nL~~------~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
+...+++|||+|||. .+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||+.|+|
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 345578999999999 99999999999999999999985 4699999999999999999999999999
Q ss_pred -CceeeeeccC
Q 021642 72 -SRIIVEFARG 81 (309)
Q Consensus 72 -r~I~V~~a~~ 81 (309)
+.|.|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999874
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=127.34 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=70.9
Q ss_pred CCCcEEEEccCCCCCcHHHHH---HHHHhcCCeeEEEEeC-----------CeEEEEECCHHHHHHHHHhcCccccCCCc
Q 021642 8 YGGTRLYVGRLASRTRSRDLE---EIFSRYGRIRDVDMKR-----------DFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~---~~F~~~G~v~~~~i~~-----------~~afV~F~~~~~a~~Al~~lng~~l~Gr~ 73 (309)
...++|||+|||+.+++++|+ ++|.+||+|..|.|+. +||||+|.+.++|++||+.|||.+|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 9999999999999863 49999999999999999999999999999
Q ss_pred eeeeeccCCC
Q 021642 74 IIVEFARGGP 83 (309)
Q Consensus 74 I~V~~a~~~~ 83 (309)
|.|++++.++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999765
No 101
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=1.2e-16 Score=134.43 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=70.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
...+++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||..|||+.|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999963 5999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021642 79 ARGGPR 84 (309)
Q Consensus 79 a~~~~~ 84 (309)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 986543
No 102
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=126.35 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...+++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34568999999999999999999999999999999953 69999999999999999999999999999999999
Q ss_pred cCCC
Q 021642 80 RGGP 83 (309)
Q Consensus 80 ~~~~ 83 (309)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8653
No 103
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=1.9e-16 Score=118.93 Aligned_cols=73 Identities=26% Similarity=0.424 Sum_probs=68.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|++|| .|||..|+|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 357999999999999999999999999999999863 49999999999999999 999999999999999998
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 104
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=1.7e-16 Score=118.96 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=66.9
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
..+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 34567789999999999999999999999999999999863 499999999999999994 588899999999
Q ss_pred eeec
Q 021642 76 VEFA 79 (309)
Q Consensus 76 V~~a 79 (309)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 105
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.2e-17 Score=124.01 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=68.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.....++|||+|||..+++++|+++|..|+.|..+... ++||||+|.+.++|++||+.|||+.|+|+.|.|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 45678999999999999999999999988655544332 3599999999999999999999999999999999998
Q ss_pred CCCC
Q 021642 81 GGPR 84 (309)
Q Consensus 81 ~~~~ 84 (309)
+...
T Consensus 91 ~~~~ 94 (102)
T 2fc8_A 91 PKGE 94 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7644
No 106
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=2e-16 Score=130.89 Aligned_cols=77 Identities=42% Similarity=0.674 Sum_probs=71.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
.....++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|.++++.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 34567999999999999999999999999999999997 569999999999999999999999999999999999865
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=126.02 Aligned_cols=73 Identities=34% Similarity=0.578 Sum_probs=68.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+||+..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++|| .|||+.|+|+.|.|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34799999999999999999999999999999996 359999999999999999 999999999999999987
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 108
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=118.40 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~---~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
...++|||+|||..+++++|+++|.+||.|..|.+.+. ||||+|.+.++|++||+ |||..|+|+.|.|.++....
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 45679999999999999999999999999999844322 99999999999999998 99999999999999887543
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=5.2e-17 Score=123.68 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||..+++++|+++|.+||.|..+.|+ ++||||+|.+.++|++||+.|||+.|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456999999999999999999999999999766554 35999999999999999999999999999999998
Q ss_pred cc
Q 021642 79 AR 80 (309)
Q Consensus 79 a~ 80 (309)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 110
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=117.70 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=70.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.....++|||+|||..+++++|+++|..| .|..|.|+. +||||+|.+.++|++||. |||..|+|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44567999999999999999999999999 999999864 499999999999999998 999999999999999
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
++..+
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 111
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2.7e-16 Score=125.78 Aligned_cols=74 Identities=26% Similarity=0.422 Sum_probs=68.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.|| .|||+.|+|+.|.|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 58999999999999999999999999999999863 49999999999999999 8999999999999999986
Q ss_pred CCC
Q 021642 82 GPR 84 (309)
Q Consensus 82 ~~~ 84 (309)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 112
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=119.25 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEeCC----eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMKRD----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~-~i~~~----~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
...++|||+|||+.+++++|+++|.+||.|..| .|+.+ .|||+|.+.++|+.||..|||..|+|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 457899999999999999999999999999999 46543 5999999999999999999999999999999999865
No 113
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=2.9e-16 Score=125.74 Aligned_cols=78 Identities=33% Similarity=0.471 Sum_probs=70.3
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.......++|||+|| .+++++|+++|.+||+|..|.|. ++||||+|.+.++|+.||+.|||..|+|+.|.|.+++.
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 345567899999996 69999999999999999999997 57999999999999999999999999999999999986
Q ss_pred CC
Q 021642 82 GP 83 (309)
Q Consensus 82 ~~ 83 (309)
.+
T Consensus 111 ~~ 112 (121)
T 2bz2_A 111 QP 112 (121)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 114
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=123.47 Aligned_cols=75 Identities=24% Similarity=0.419 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 348999999999999999999999999999999964 4999999999999999977 9999999999999998
Q ss_pred CCCC
Q 021642 81 GGPR 84 (309)
Q Consensus 81 ~~~~ 84 (309)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7644
No 115
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=5.2e-16 Score=122.45 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-----~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
...+++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||..|||..|+|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 34678999999999999999999999999999999963 5999999999999999999999999999999999975
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
.
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 116
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=131.10 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=67.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC--CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G--~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..++|||+||++.+++++|+++|.+|| +|..|.|+. |||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999863 4999999999999999999999999999999999
Q ss_pred ccC
Q 021642 79 ARG 81 (309)
Q Consensus 79 a~~ 81 (309)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 117
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=121.58 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.....++|||+|||+.+++++|+++|.+||.| .|.|+. +||||+|.+.++|++|| .||+.+|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 44567899999999999999999999999954 888863 49999999999999999 6899999999999999
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88654
No 118
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=124.34 Aligned_cols=77 Identities=19% Similarity=0.398 Sum_probs=69.6
Q ss_pred CCCCcEEEE--ccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCcccc-----CCCceeee
Q 021642 7 RYGGTRLYV--GRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDV-----DGSRIIVE 77 (309)
Q Consensus 7 ~~~~~~v~V--~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~lng~~l-----~Gr~I~V~ 77 (309)
..++.+||| +||++.+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||.+| .|..|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 346789999 77999999999999999999999999874 5999999999999999999999988 68889999
Q ss_pred eccCCC
Q 021642 78 FARGGP 83 (309)
Q Consensus 78 ~a~~~~ 83 (309)
|++..+
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 988543
No 119
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=122.87 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=66.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
....++|||+||+..+++++|+++|.+|| |..|.|+ ++||||+|.+.++|++|| .|||..|+|+.|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999985 359999999999999999 999999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
+++..
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99854
No 120
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=119.57 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=69.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE---eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i---~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
....++|||+|||..+++++|+++|.+||.|..+.. .++||||+|.+.++|++||+.|||..|+|+.|.|.++....
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 446799999999999999999999999999987722 24699999999999999999999999999999999998654
Q ss_pred C
Q 021642 84 R 84 (309)
Q Consensus 84 ~ 84 (309)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 121
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.1e-16 Score=131.47 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=67.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
....++|||+|||+.+++++|+++|.+|| |+.|.|+ ++||||+|.+.++|++|| .||+.+|+|+.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34668999999999999999999999999 7788886 459999999999999999 89999999999999998
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86544
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=119.01 Aligned_cols=73 Identities=25% Similarity=0.398 Sum_probs=67.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
.++++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4679999999999999999999999999999999863 59999999999999999999999999999998875
Q ss_pred c
Q 021642 80 R 80 (309)
Q Consensus 80 ~ 80 (309)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.2e-16 Score=120.60 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=65.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.+ |+.||..|||..|+|+.|.|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999963 49999999999 99999999999999999999999865
Q ss_pred C
Q 021642 83 P 83 (309)
Q Consensus 83 ~ 83 (309)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 124
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=6.5e-16 Score=131.81 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=70.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..+++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||+.|+|+.|.|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4579999999999999999999999999999999964 699999999999999999999999999999999997
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 125
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=132.22 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEe--------CCeEEEEECCHHHHHHHHHhcCccc
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMK--------RDFAFVEFSDPRDADDARYSLNGRD 68 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--------~~i~--------~~~afV~F~~~~~a~~Al~~lng~~ 68 (309)
++..+.++|||+|||..+++++|+++|.+||.|.. |.|+ ++||||+|.+.++|++||+.|||..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999988 6664 3499999999999999999999999
Q ss_pred cCCCceeeeeccCCCCC
Q 021642 69 VDGSRIIVEFARGGPRG 85 (309)
Q Consensus 69 l~Gr~I~V~~a~~~~~~ 85 (309)
|+|+.|.|.+++.....
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999876543
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2.3e-16 Score=128.69 Aligned_cols=77 Identities=43% Similarity=0.666 Sum_probs=71.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
++...
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98654
No 127
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=124.26 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCe-eEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI-RDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v-~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
+.....++|||+|||+.+++++|+++|..||.| ..|.|+ ++||||+|.+.++|++||+. |++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 345677999999999999999999999999999 778885 46999999999999999976 999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998753
No 128
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=6.5e-16 Score=121.23 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=66.9
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 4 ~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
.++....++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||..| +..|+|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 34566789999999999999999999999999999999963 49999999999999999876 5999999999
Q ss_pred eeeccCCC
Q 021642 76 VEFARGGP 83 (309)
Q Consensus 76 V~~a~~~~ 83 (309)
|.++....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998653
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=3.6e-16 Score=138.72 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=66.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC--CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G--~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..++|||+||++.|++++|+++|.+|| +|+.|.|+. +||||+|.+.++|++||+.|||++|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999864 3999999999999999999999999999999999
Q ss_pred cc
Q 021642 79 AR 80 (309)
Q Consensus 79 a~ 80 (309)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 130
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.4e-16 Score=124.31 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=65.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--Ce-EEEEECCHHHHHHHHHhcCccccCC--CceeeeeccCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~-afV~F~~~~~a~~Al~~lng~~l~G--r~I~V~~a~~~ 82 (309)
..|||+||++.+++++|+++|.+||+|..|.|+. +| |||+|.+.++|+.||+.|||.+|.| ..|.|++++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 3467999999999999999999999999998864 66 9999999999999999999999988 58999999864
No 131
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=121.38 Aligned_cols=76 Identities=16% Similarity=0.373 Sum_probs=69.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCcccc--------C
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDV--------D 70 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l--------~ 70 (309)
+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345679999999999999999999999999999999964 4999999999999999999999999 5
Q ss_pred CCceeeeeccC
Q 021642 71 GSRIIVEFARG 81 (309)
Q Consensus 71 Gr~I~V~~a~~ 81 (309)
++.|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 67799999874
No 132
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=117.69 Aligned_cols=72 Identities=26% Similarity=0.408 Sum_probs=64.9
Q ss_pred CcEEEEccCCCCCcHHH----HHHHHHhcC-CeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 10 GTRLYVGRLASRTRSRD----LEEIFSRYG-RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~d----L~~~F~~~G-~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
.|.|||+|||+.+++++ |.++|.+|| +|..|. .|||||+|.+.++|+.||+.|||..|.|+.|.|.+|+...
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 34499999999999988 558999994 999883 4999999999999999999999999999999999999754
No 133
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.5e-16 Score=129.33 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=67.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCccccCC--CceeeeeccCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~----~~~afV~F~~~~~a~~Al~~lng~~l~G--r~I~V~~a~~~ 82 (309)
...+|||+||++.+++++|+++|.+||+|+.|.|. ++||||+|.+.++|+.||+.|||.+|.| +.|.|+|++..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34678999999999999999999999999999986 2499999999999999999999999965 99999999865
No 134
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=125.47 Aligned_cols=74 Identities=35% Similarity=0.514 Sum_probs=68.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999985 3599999999999999999999999999999999
Q ss_pred ec
Q 021642 78 FA 79 (309)
Q Consensus 78 ~a 79 (309)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 135
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.6e-16 Score=119.71 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~-~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||+.+++++|+++|.+||.|.. |.|+ ++||||+|.+.++|++||.. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 4567899999999999999999999999999987 7774 46999999999999999977 9999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98754
No 136
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-16 Score=127.15 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=65.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~-~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||+.+++++|+++|..||.|..+ .|. ++||||+|.+.++|++||+ |||+.|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466999999999999999999999999998763 332 4599999999999999998 999999999999999
Q ss_pred ccC
Q 021642 79 ARG 81 (309)
Q Consensus 79 a~~ 81 (309)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 137
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.63 E-value=1.5e-15 Score=126.40 Aligned_cols=76 Identities=43% Similarity=0.679 Sum_probs=70.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34579999999999999999999999999999999864 4999999999999999999999999999999999
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
++..
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9865
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=3.1e-16 Score=118.09 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=68.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..++|||+|||+.+++++|+++|.+| +|..+.|. ++||||+|.+.++|++||+.|||..|+|+.|.|+++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 56899999999999999999999999 99999885 579999999999999999999999999999999998753
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=121.84 Aligned_cols=77 Identities=25% Similarity=0.400 Sum_probs=67.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE-------eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM-------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i-------~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
+....++|||+|||..+++++|+++|.+||.|..+.| .++||||+|.+.++|++||+ |||..|+|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3446899999999999999999999999997765211 25699999999999999998 999999999999999
Q ss_pred ccCCC
Q 021642 79 ARGGP 83 (309)
Q Consensus 79 a~~~~ 83 (309)
++...
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98654
No 140
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=116.72 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=68.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||. +++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 345678999999999999999999999999999999864 399999999999999997 4789999999999
Q ss_pred eccCCCC
Q 021642 78 FARGGPR 84 (309)
Q Consensus 78 ~a~~~~~ 84 (309)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987543
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=127.22 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=69.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--EEEe--------CCeEEEEECCHHHHHHHHHhcCcc----ccCC
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--VDMK--------RDFAFVEFSDPRDADDARYSLNGR----DVDG 71 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--~~i~--------~~~afV~F~~~~~a~~Al~~lng~----~l~G 71 (309)
.....++|||+||++.+++++|+++|.+||.|.. |.|+ ++||||+|.+. +|++||..|||+ +|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456799999999999999999999999999966 7775 35999999999 999999999999 9999
Q ss_pred CceeeeeccCCC
Q 021642 72 SRIIVEFARGGP 83 (309)
Q Consensus 72 r~I~V~~a~~~~ 83 (309)
+.|.|.++++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998653
No 142
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=4.3e-16 Score=124.03 Aligned_cols=75 Identities=17% Similarity=0.101 Sum_probs=68.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~---v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
+....++|||+|||+.+++++|++||..||. |..|.|+. +||||+|.+.++|++||+ ||+++|+|+.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 4456799999999999999999999999999 88888863 499999999999999998 999999999999
Q ss_pred eeeccC
Q 021642 76 VEFARG 81 (309)
Q Consensus 76 V~~a~~ 81 (309)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998863
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=4.2e-16 Score=113.46 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=62.7
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
+|||+|||..+++++|+++|.+||+|..+.|+. +||||+|.+.++|++||+ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999998853 499999999999999996 9999999999999875
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=127.20 Aligned_cols=80 Identities=29% Similarity=0.498 Sum_probs=70.7
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEe-----CCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMK-----RDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 3 r~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~--------~~i~-----~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.+.....+++|||+|||+.+++++|+++|.+||.|.. +.+. ++||||+|.+.++|+.||..|||+.|
T Consensus 38 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 38 SYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp TCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 4555677899999999999999999999999998865 3332 35999999999999999999999999
Q ss_pred CCCceeeeeccCC
Q 021642 70 DGSRIIVEFARGG 82 (309)
Q Consensus 70 ~Gr~I~V~~a~~~ 82 (309)
.|+.|.|.+++..
T Consensus 118 ~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 FGKPMVVQFARSA 130 (143)
T ss_dssp TTEECEEEECCCS
T ss_pred CCcEEEEEECCCC
Confidence 9999999999864
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.1e-15 Score=114.31 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=65.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhc----C-------CeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRY----G-------RIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~----G-------~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
...++|||+|||..+++++|+++|.+| | .|..+.|. ++||||+|.+.++|++|| .|||..|+|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 456899999999999999999999999 8 99999987 579999999999999999 999999999999
Q ss_pred eeee
Q 021642 75 IVEF 78 (309)
Q Consensus 75 ~V~~ 78 (309)
.|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.1e-16 Score=113.41 Aligned_cols=68 Identities=25% Similarity=0.500 Sum_probs=64.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
++|||+|||..+++++|+++|.+||+|..+.|+. +||||+|.+.++|++||..|+ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999998853 499999999999999999999 9999999999986
No 147
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=1.4e-15 Score=123.04 Aligned_cols=73 Identities=25% Similarity=0.462 Sum_probs=67.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---Ce-EEEEECCHHHHHHHHHhcCccccCC--CceeeeeccCC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---~~-afV~F~~~~~a~~Al~~lng~~l~G--r~I~V~~a~~~ 82 (309)
-..|||+||++.+++++|.++|.+||+|..|.|+. +| |||+|.+.++|+.||+.|||..|.| ..|+|+|++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 36788999999999999999999999999998864 46 9999999999999999999999988 88999999864
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.3e-15 Score=124.61 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=68.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~---v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
+....++|||+|||+.+|+++|+++|.+||. |..|.|+. +||||+|.+.++|++||+ ||+.+|+|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456799999999999999999999999999 78888863 499999999999999998 999999999999
Q ss_pred eeeccC
Q 021642 76 VEFARG 81 (309)
Q Consensus 76 V~~a~~ 81 (309)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998863
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=119.90 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..++|||+|||+.++++||++||..| .|..|.|+ ++||||+|.+.++|++|| .||+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 89999986 469999999999999999 7999999999999988764
No 150
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=120.32 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCce
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~---v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I 74 (309)
++....++|||+|||+.+++++|+++|..||. |..|.|+. +||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 35567899999999999999999999999988 88888863 599999999999999998 99999999999
Q ss_pred eeeeccC
Q 021642 75 IVEFARG 81 (309)
Q Consensus 75 ~V~~a~~ 81 (309)
.|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998864
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.1e-15 Score=131.57 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=69.9
Q ss_pred CCcEEEEccCC-CCCcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 9 GGTRLYVGRLA-SRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 9 ~~~~v~V~nL~-~~~te~dL~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
++++|||+||+ +.+++++|+++|.+||.|..|.|++ +||||+|.+.++|+.||+.|||+.|.|+.|.|.+++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 57899999999 8999999999999999999999974 79999999999999999999999999999999998754
No 152
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=2.2e-15 Score=113.96 Aligned_cols=74 Identities=28% Similarity=0.543 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCcc--ccCCCceeeeec
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFA 79 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~--~l~Gr~I~V~~a 79 (309)
......++|||+|||+++++++|+++|.+||+|..|.|+ +|||||+|.+.++|+++ ++. .+.|+.|.|.++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~----~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL----CGEDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH----TTCEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH----cCCCcccCCEEEEEEEc
Confidence 345678999999999999999999999999999999997 57999999999998843 444 456889999988
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
.++
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=1.2e-15 Score=111.00 Aligned_cols=67 Identities=21% Similarity=0.478 Sum_probs=62.2
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
+|||+|||..+++++|+++|.+||+|..+.|+ ++||||+|.+.++|+.||+ +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999885 3599999999999999996 5899999999999875
No 154
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=114.12 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=64.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCCC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~~ 84 (309)
...++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++|+.. ...+.|..|.|.++.+...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 457999999999999999999999999999999997 57999999999999865432 4566899999999886543
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=7.9e-15 Score=128.03 Aligned_cols=76 Identities=29% Similarity=0.451 Sum_probs=68.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
..+.++|||+|||..+++++|+++|.+||+|..|.|++ +||||+|.+.++|+.||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999864 3999999999999999999999999999999998
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8643
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=119.15 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=64.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCe----eEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRI----RDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v----~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
...++|||+|||+.+++++|++||.+||.| ..|.|+ ++||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999975 577775 35999999999999999975 999999999999
Q ss_pred eeccC
Q 021642 77 EFARG 81 (309)
Q Consensus 77 ~~a~~ 81 (309)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 157
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=2.1e-15 Score=116.35 Aligned_cols=75 Identities=19% Similarity=0.411 Sum_probs=68.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 344568999999999999999999999999999999964 699999999999999997 99999999999998
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 8754
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=6.7e-15 Score=118.67 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCee--EEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIR--DVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~--~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
+....++|||+|||+.+++++|+++|.+| .|. .|.|+ ++||||+|.+.++|++||+ +++..|+|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 677 78886 4699999999999999996 5779999999999
Q ss_pred eeccC
Q 021642 77 EFARG 81 (309)
Q Consensus 77 ~~a~~ 81 (309)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=8.5e-15 Score=127.83 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..++|||+||+..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||++|+|+.|.|.+++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45789999999999999999999999999999986 35999999999999999999999999999999999875
No 160
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=8e-15 Score=130.57 Aligned_cols=76 Identities=24% Similarity=0.482 Sum_probs=69.0
Q ss_pred CCCcEEEEccCCCCC---------cHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCcccc-------
Q 021642 8 YGGTRLYVGRLASRT---------RSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDV------- 69 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~---------te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l------- 69 (309)
...++|||+||+..+ ++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 457899999999998 799999999999999999997 57999999999999999999999999
Q ss_pred -----CCCceeeeeccCCC
Q 021642 70 -----DGSRIIVEFARGGP 83 (309)
Q Consensus 70 -----~Gr~I~V~~a~~~~ 83 (309)
.|+.|.|.+|+..+
T Consensus 212 ~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp GGGGGGSCCCEEEECC---
T ss_pred ccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.1e-14 Score=118.84 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=69.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.....++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 445678999999999999999999999999999999963 399999999999999999999999999999999
Q ss_pred ecc
Q 021642 78 FAR 80 (309)
Q Consensus 78 ~a~ 80 (309)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 162
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=2.2e-14 Score=126.64 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=71.3
Q ss_pred CCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 7 RYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 7 ~~~~~~v~V~nL~~-~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
..++++|||+|||. .+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||..|.|+.|.|.++...
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35679999999999 99999999999999999999997 579999999999999999999999999999999998754
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=2.5e-14 Score=123.89 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=71.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999963 49999999999999999999999999999999999
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
...+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=3.6e-14 Score=117.53 Aligned_cols=73 Identities=30% Similarity=0.549 Sum_probs=68.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.++|||+|||..+++++|+++|..||.|..+.|+. +||||+|.+.++|+.||+.|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999864 4999999999999999999999999999999999885
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=2.7e-14 Score=121.98 Aligned_cols=76 Identities=22% Similarity=0.503 Sum_probs=70.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999863 49999999999999999999999999999999999
Q ss_pred cCCC
Q 021642 80 RGGP 83 (309)
Q Consensus 80 ~~~~ 83 (309)
++..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=4.4e-14 Score=127.92 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCccccC-CCceeeeecc
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFAR 80 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~---~~afV~F~~~~~a~~Al~~lng~~l~-Gr~I~V~~a~ 80 (309)
.+....++|||+||+..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.|||..|. |+.|.|.|++
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3445679999999999999999999999999999999964 69999999999999999999999999 9999999986
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=2.8e-14 Score=118.64 Aligned_cols=75 Identities=33% Similarity=0.518 Sum_probs=69.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
++++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999998853 599999999999999999999999999999999988
Q ss_pred CCC
Q 021642 81 GGP 83 (309)
Q Consensus 81 ~~~ 83 (309)
...
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 168
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.6e-14 Score=122.68 Aligned_cols=74 Identities=27% Similarity=0.461 Sum_probs=69.8
Q ss_pred CCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 9 GGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 9 ~~~~v~V~nL~~-~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
++++|||+|||. .+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999997 579999999999999999999999999999999998754
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=5.1e-14 Score=117.59 Aligned_cols=73 Identities=23% Similarity=0.525 Sum_probs=68.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999853 4999999999999999999999999999999998
Q ss_pred c
Q 021642 79 A 79 (309)
Q Consensus 79 a 79 (309)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=5.9e-14 Score=121.53 Aligned_cols=73 Identities=29% Similarity=0.464 Sum_probs=66.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4799999999999999999999999999999995 45999999999999999999999999999999988764
Q ss_pred C
Q 021642 82 G 82 (309)
Q Consensus 82 ~ 82 (309)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=5.7e-14 Score=127.17 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~----~~F~~~G~v~~~~i~~-----~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
+....++|||+||+..+++++|+ ++|.+||.|..|.|++ +||||+|.+.++|+.||+.|||..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45668999999999999999976 8999999999999865 69999999999999999999999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.+++..
T Consensus 85 ~~a~~~ 90 (282)
T 3pgw_A 85 QYAKTD 90 (282)
T ss_pred EEeccC
Confidence 999754
No 172
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.6e-14 Score=109.24 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEccCCCCCc-----------HHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 5 DDRYGGTRLYVGRLASRTR-----------SRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~t-----------e~dL~~~F~~~G~v~~~~i~----~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.......+|+|.||..... +++|+++|.+||+|..|.|. ++||||+|.+.++|++||..|||..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456789999999954432 58999999999999999775 57999999999999999999999999
Q ss_pred CCCceeeeeccCCC
Q 021642 70 DGSRIIVEFARGGP 83 (309)
Q Consensus 70 ~Gr~I~V~~a~~~~ 83 (309)
+|+.|.|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999998653
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=5.2e-14 Score=116.98 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=67.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
..++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|++||+ |+|..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 357999999999999999999999999999999864 399999999999999996 89999999999999998
Q ss_pred CC
Q 021642 81 GG 82 (309)
Q Consensus 81 ~~ 82 (309)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=6.3e-14 Score=119.52 Aligned_cols=76 Identities=25% Similarity=0.445 Sum_probs=66.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+|||..+++++|+++|..||.|..|.|+. +||||+|.+.++|++||.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999863 4999999999999999976 799999999999999
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87543
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=9.8e-14 Score=122.39 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=69.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccC-CCceeeeeccC
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFARG 81 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~-Gr~I~V~~a~~ 81 (309)
..++|||+|||..+++++|+++|.+|| +|..|.|+ ++||||+|.+.++|++||..|||..|+ |+.|.|.|+++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 468999999999999999999999999 99999993 479999999999999999999999999 99999999985
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=8.6e-14 Score=119.37 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=69.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccC-CCceeeeeccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFARG 81 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~-Gr~I~V~~a~~ 81 (309)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+ ++||||+|.+.++|++||..|||..|+ |+.|.|.|+++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3478999999999999999999999999 99999994 479999999999999999999999999 99999999875
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=111.29 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=59.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----------CCeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----------RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-----------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
....++|||+|||+.+++++|+++|.+||+|. +.++ ++||||+|.+.++|++||+.|+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45679999999999999999999999999999 6663 3599999999999999999883 36666666
Q ss_pred eeec
Q 021642 76 VEFA 79 (309)
Q Consensus 76 V~~a 79 (309)
|..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5544
No 178
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=8e-14 Score=115.31 Aligned_cols=73 Identities=27% Similarity=0.481 Sum_probs=67.9
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~~ 83 (309)
.+|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 4799999999999999999999999999999963 499999999999999999999999999999999987543
No 179
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.1e-14 Score=112.46 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=62.9
Q ss_pred cEEEEccC----CCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECC----HHH----HHHHHH--hcCccc
Q 021642 11 TRLYVGRL----ASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSD----PRD----ADDARY--SLNGRD 68 (309)
Q Consensus 11 ~~v~V~nL----~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~----~~~----a~~Al~--~lng~~ 68 (309)
+.|||+|| ++.|++++|+++|..||+|..|.++. |||||+|.+ +++ |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 99999999999999999999999964 499999996 433 788888 899999
Q ss_pred cCCCceeeeeccC
Q 021642 69 VDGSRIIVEFARG 81 (309)
Q Consensus 69 l~Gr~I~V~~a~~ 81 (309)
|+|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998763
No 180
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.1e-13 Score=117.96 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=68.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
+....++|||+|||..+++++|+++|..||+|..|.|+. +||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 455679999999999999999999999999999999864 4999999999999999965 8999999999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98754
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=8.3e-14 Score=125.32 Aligned_cols=74 Identities=27% Similarity=0.504 Sum_probs=69.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
...++|||+|||..+|+++|+++|..||.|..|.|. ++||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 456899999999999999999999999999999997 57999999999999999999999999999999999874
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=1.3e-13 Score=115.23 Aligned_cols=73 Identities=25% Similarity=0.487 Sum_probs=66.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccC---CCceeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVD---GSRIIVE 77 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~---Gr~I~V~ 77 (309)
...++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|++||+.|||..|. ++.|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3568999999999999999999999999999999864 49999999999999999999998776 4899999
Q ss_pred ecc
Q 021642 78 FAR 80 (309)
Q Consensus 78 ~a~ 80 (309)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.47 E-value=1.7e-13 Score=113.88 Aligned_cols=73 Identities=30% Similarity=0.497 Sum_probs=67.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCC--Cceee
Q 021642 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDG--SRIIV 76 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~G--r~I~V 76 (309)
....++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|.+||..|||..|.| +.|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 35678999999999999999999999999999998863 499999999999999999999999988 99999
Q ss_pred eec
Q 021642 77 EFA 79 (309)
Q Consensus 77 ~~a 79 (309)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 885
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=1.6e-13 Score=113.64 Aligned_cols=72 Identities=35% Similarity=0.625 Sum_probs=65.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCccccCCCc--eeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSR--IIVE 77 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~--I~V~ 77 (309)
...++|||+|||..+++++|+++|.+||.|..+.|. ++||||+|.+.++|++||+.|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456899999999999999999999999999999885 359999999999999999999999999965 7777
Q ss_pred ec
Q 021642 78 FA 79 (309)
Q Consensus 78 ~a 79 (309)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=8.3e-14 Score=116.90 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=67.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE---eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccCC
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i---~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~~ 82 (309)
...++|||+|||..+++++|+++|.+||+|..+.. .++||||+|.+.++|.+||..|||..|+|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 35689999999999999999999999999988711 2469999999999999999999999999999999999864
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=2.4e-13 Score=106.09 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCcEEEEccCCC-----CCcHHHHHHHHHhcCCeeEEEEeC---------CeEEEEECCHHHHHHHHHhcCccccCCCc
Q 021642 8 YGGTRLYVGRLAS-----RTRSRDLEEIFSRYGRIRDVDMKR---------DFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (309)
Q Consensus 8 ~~~~~v~V~nL~~-----~~te~dL~~~F~~~G~v~~~~i~~---------~~afV~F~~~~~a~~Al~~lng~~l~Gr~ 73 (309)
.++.+|+|.||.. ..++++|+++|.+||+|..|.|+. |||||+|.+.++|++|++.|||.+|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 236899999999999999999862 49999999999999999999999999999
Q ss_pred eeeeeccC
Q 021642 74 IIVEFARG 81 (309)
Q Consensus 74 I~V~~a~~ 81 (309)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=2.1e-13 Score=117.73 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=64.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
.++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|+.||..++ ..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999986 3699999999999999997654 589999999998764
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=4.7e-13 Score=111.70 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----------CCeEEEEECCHHHHHHHHHhcCccccC---CCcee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----------RDFAFVEFSDPRDADDARYSLNGRDVD---GSRII 75 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~----------~~~afV~F~~~~~a~~Al~~lng~~l~---Gr~I~ 75 (309)
+.++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999885 249999999999999999999998876 56777
Q ss_pred eeeccCC
Q 021642 76 VEFARGG 82 (309)
Q Consensus 76 V~~a~~~ 82 (309)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776644
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.41 E-value=3.6e-13 Score=117.26 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCe--eEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCC----ceee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRI--RDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGS----RIIV 76 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v--~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr----~I~V 76 (309)
++.+|||+|||+.++|++|+++|.+||.| ..+.|+. +||||+|.+.++|..||..|||++|.|. .|.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 46789999999999999999999999999 8888864 4999999999999999999999999886 4666
Q ss_pred eec
Q 021642 77 EFA 79 (309)
Q Consensus 77 ~~a 79 (309)
.++
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=4.8e-13 Score=121.60 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeC---------CeEEEEECCHHHHHHHHHhcCccccCCCceee
Q 021642 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKR---------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~-~te~dL~~~F~~~G~v~~~~i~~---------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V 76 (309)
....++|||+|||.. +++++|+++|.+||.|..|.|+. +||||+|.+.++|..|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 346799999999999 99999999999999999999863 48999999999999999 99999999999999
Q ss_pred eeccCC
Q 021642 77 EFARGG 82 (309)
Q Consensus 77 ~~a~~~ 82 (309)
.+++.+
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=7.2e-13 Score=110.55 Aligned_cols=73 Identities=22% Similarity=0.450 Sum_probs=66.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhc----C-------CeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRY----G-------RIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~----G-------~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
+.++|||+|||..+++++|+++|.+| | .|..+.+. ++||||+|.+.++|+.|| .|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 78888775 579999999999999999 9999999999999
Q ss_pred eeeccCC
Q 021642 76 VEFARGG 82 (309)
Q Consensus 76 V~~a~~~ 82 (309)
|.++...
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9987654
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.39 E-value=1.9e-13 Score=114.72 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=66.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-----EEE--eCCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-----VDM--KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~-----~~i--~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
+....++|||+|||..+++++|+++|.+||.|.. ... .++||||+|.+.++|++|| .|||..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 5567899999999999999999999999986544 222 2479999999999999999 6999999999999999
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8864
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=8.8e-13 Score=112.51 Aligned_cols=73 Identities=22% Similarity=0.433 Sum_probs=66.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhc----C-------CeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRY----G-------RIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~----G-------~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
..++|||+|||..+++++|+++|.+| | .|..+.+. ++||||+|.+.++|++|| .|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 5 67777775 579999999999999999 8999999999999
Q ss_pred eeeccCC
Q 021642 76 VEFARGG 82 (309)
Q Consensus 76 V~~a~~~ 82 (309)
|.++...
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998764
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.5e-12 Score=97.06 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=61.7
Q ss_pred CcEEEEccCC-------CCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 10 GTRLYVGRLA-------SRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 10 ~~~v~V~nL~-------~~~te~dL~~~F~~~G~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
..+|.|.-.. ..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.+++ +.|+.|.|.++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 5566665443 468999999999999999999996 57999999999999999988665 67999999999
Q ss_pred cCCCC
Q 021642 80 RGGPR 84 (309)
Q Consensus 80 ~~~~~ 84 (309)
+..+.
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87654
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.36 E-value=9.4e-13 Score=109.30 Aligned_cols=71 Identities=25% Similarity=0.504 Sum_probs=64.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999864 5999999999999999975 568899999998876
Q ss_pred C
Q 021642 81 G 81 (309)
Q Consensus 81 ~ 81 (309)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=1.2e-12 Score=122.37 Aligned_cols=74 Identities=20% Similarity=0.456 Sum_probs=64.2
Q ss_pred CCCCcEEEEcc--CCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccC---CC--ceeee
Q 021642 7 RYGGTRLYVGR--LASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVD---GS--RIIVE 77 (309)
Q Consensus 7 ~~~~~~v~V~n--L~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~---Gr--~I~V~ 77 (309)
..++.+|||+| |+..+++++|+++|.+||+|..|.|. ++||||+|.+.++|++||+.|||+++. |+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 45678999999 57899999999999999999999884 579999999999999999999999883 44 46666
Q ss_pred ecc
Q 021642 78 FAR 80 (309)
Q Consensus 78 ~a~ 80 (309)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 664
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.35 E-value=1.2e-12 Score=118.40 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCCCcEEEEccCCCCC-cHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 7 RYGGTRLYVGRLASRT-RSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~~-te~dL~~~F~~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....++|||+|||..+ ++++|+++|..||.|..+.|+. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3567899999999995 9999999999999999999864 4999999999999999999999999999999999
Q ss_pred ccCC
Q 021642 79 ARGG 82 (309)
Q Consensus 79 a~~~ 82 (309)
+.+.
T Consensus 261 a~~~ 264 (284)
T 3smz_A 261 CAPG 264 (284)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9864
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=1.3e-12 Score=118.81 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
...++|||+|||..+++++|+++|..||+|..|.|+. +||||+|.+.++|+.|| .|||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECC
Confidence 4579999999999999999999999999999999864 59999999999999999 599999999999999875
No 199
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.1e-12 Score=101.97 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeCC--eEEEEECC-HHHHHHHHHhc--CccccCCCceeeeecc
Q 021642 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKRD--FAFVEFSD-PRDADDARYSL--NGRDVDGSRIIVEFAR 80 (309)
Q Consensus 7 ~~~~~~v~V~nL~~~-~te~dL~~~F~~~G~v~~~~i~~~--~afV~F~~-~~~a~~Al~~l--ng~~l~Gr~I~V~~a~ 80 (309)
-..++.|||+||+.. +++++|+++|.+||+|.+|+|..+ +|||.|.+ .++|+.||.+| ++.+|.|..++|++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 356899999999999 999999999999999999999887 99999999 89999999999 4789999999988754
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=5.4e-13 Score=103.81 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=57.1
Q ss_pred EccCCCCCcHHHHHHHH------------HhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCccccCCCcee
Q 021642 15 VGRLASRTRSRDLEEIF------------SRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (309)
Q Consensus 15 V~nL~~~~te~dL~~~F------------~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~ 75 (309)
+.||+..+++++|+++| .+||+|..|.|+ +|||||+|.+.++|++|+..|||..|+|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777777777666 999999999997 45999999999999999999999999999999
Q ss_pred eeec
Q 021642 76 VEFA 79 (309)
Q Consensus 76 V~~a 79 (309)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=3.2e-12 Score=99.60 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=63.8
Q ss_pred CCCcEEEEccC--CCCC--------cHHHHHHHHHhcCCeeEEEEe----------CCeEEEEECCHHHHHHHHHhcCcc
Q 021642 8 YGGTRLYVGRL--ASRT--------RSRDLEEIFSRYGRIRDVDMK----------RDFAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 8 ~~~~~v~V~nL--~~~~--------te~dL~~~F~~~G~v~~~~i~----------~~~afV~F~~~~~a~~Al~~lng~ 67 (309)
.++..|+|.|+ +..+ .++||+++|.+||+|..|.|+ ++||||+|.+.++|++||+.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678889998 3333 247899999999999999985 369999999999999999999999
Q ss_pred ccCCCceeeeeccC
Q 021642 68 DVDGSRIIVEFARG 81 (309)
Q Consensus 68 ~l~Gr~I~V~~a~~ 81 (309)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998763
No 202
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=4.7e-12 Score=114.57 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=69.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCccccCCCceeeeec
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--------~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a 79 (309)
...++|||+|||..+++++|+++|..||.|..+.|+. +||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3568999999999999999999999999999998863 49999999999999999999999999999999999
Q ss_pred cCC
Q 021642 80 RGG 82 (309)
Q Consensus 80 ~~~ 82 (309)
...
T Consensus 173 ~~~ 175 (284)
T 3smz_A 173 DAG 175 (284)
T ss_dssp CGG
T ss_pred CCC
Confidence 764
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=6.6e-12 Score=112.84 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCc-cccC---CCceeee
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNG-RDVD---GSRIIVE 77 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~-------~~~afV~F~~~~~a~~Al~~lng-~~l~---Gr~I~V~ 77 (309)
..++|||+|||..+++++|+++|..||.|..|.|+ ++||||+|.+.++|..||..||+ ..+. ++.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 46899999999999999999999999999999986 45999999999999999999955 4444 8999999
Q ss_pred eccCC
Q 021642 78 FARGG 82 (309)
Q Consensus 78 ~a~~~ 82 (309)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98753
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=1.1e-11 Score=98.64 Aligned_cols=73 Identities=22% Similarity=0.329 Sum_probs=63.7
Q ss_pred CCcEEEEccCCC--C---CcHHHHHHHHHhcCCeeEEEEeC------------CeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 9 GGTRLYVGRLAS--R---TRSRDLEEIFSRYGRIRDVDMKR------------DFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 9 ~~~~v~V~nL~~--~---~te~dL~~~F~~~G~v~~~~i~~------------~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
++.+|+|.||-. + -.++||++.|.+||+|..|.|++ +||||+|.+.++|.+||+.|||.+|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999832 2 24789999999999999998852 589999999999999999999999999
Q ss_pred CceeeeeccC
Q 021642 72 SRIIVEFARG 81 (309)
Q Consensus 72 r~I~V~~a~~ 81 (309)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999763
No 205
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.26 E-value=5.8e-13 Score=110.07 Aligned_cols=121 Identities=25% Similarity=0.487 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCeeEEEEeCCeEEEEECC--------HHHHHHHHHhc--Ccc-c-cCCCceeeeeccCCCC-------
Q 021642 24 SRDLEEIFSRYGRIRDVDMKRDFAFVEFSD--------PRDADDARYSL--NGR-D-VDGSRIIVEFARGGPR------- 84 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i~~~~afV~F~~--------~~~a~~Al~~l--ng~-~-l~Gr~I~V~~a~~~~~------- 84 (309)
++||.++|...|.|++++..++|+||+..+ .+|+-..+..| +|+ . ..|..|..++......
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g~kG~~A~~V~ 80 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVT 80 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEccccchhhccc
Confidence 356778889999999999999999999762 22332222233 232 2 2456665555443210
Q ss_pred CCCCCCccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCCCC
Q 021642 85 GPGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 144 (309)
Q Consensus 85 ~~~g~~~~~g~g~~~g~~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~~~ 144 (309)
..++...-+....+.+...||+||..||++++|+.......||.|+..||+.++|+..+.
T Consensus 81 ~pgg~pv~GS~rrp~~~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 81 GPGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp SGGGCCCCCCTTSCCCSCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC
T ss_pred ccCCccccccccccCCCCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCC
Confidence 001111111122334467899999999999999987777899999999999999987543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.8e-11 Score=92.04 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=62.9
Q ss_pred CCcEEEEccCCC----CCcH----HHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 9 GGTRLYVGRLAS----RTRS----RDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 9 ~~~~v~V~nL~~----~~te----~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
+..||+|..++. ++-. .+|.+.|.+||+|..++|..+.+||+|.+.++|.+||+ |||+.|+|+.|+|++++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 456777776652 2222 57899999999999999999999999999999999997 99999999999999998
Q ss_pred CCC
Q 021642 81 GGP 83 (309)
Q Consensus 81 ~~~ 83 (309)
+..
T Consensus 85 ~dW 87 (91)
T 2dnr_A 85 PSG 87 (91)
T ss_dssp CSS
T ss_pred CCc
Confidence 653
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=5.5e-11 Score=94.01 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCcEEEEccCCC--CC--------cHHHHHHHHHhcCCeeEEEEeC----CeEEEEECCHHHHHHHHHhcCccccCCCc
Q 021642 8 YGGTRLYVGRLAS--RT--------RSRDLEEIFSRYGRIRDVDMKR----DFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (309)
Q Consensus 8 ~~~~~v~V~nL~~--~~--------te~dL~~~F~~~G~v~~~~i~~----~~afV~F~~~~~a~~Al~~lng~~l~Gr~ 73 (309)
.++..|.|.|+=. .. .++||+++|.+||+|..|.|.+ |||||+|.+.++|++||+.|||.+|+|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3566788888732 21 2368899999999999999964 79999999999999999999999999999
Q ss_pred eeeeecc
Q 021642 74 IIVEFAR 80 (309)
Q Consensus 74 I~V~~a~ 80 (309)
|.|.++.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.3e-10 Score=86.46 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=61.9
Q ss_pred CCCcEEEEccCCCC------CcH---HHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 8 YGGTRLYVGRLASR------TRS---RDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~V~nL~~~------~te---~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
.+..||+|..++.. ..+ .+|.+.|.+||+|..++|..+-+||+|.+.++|.+||+ |||+.|+|+.|+|.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 34578888877643 121 56899999999999999999999999999999999997 999999999999998
Q ss_pred cc
Q 021642 79 AR 80 (309)
Q Consensus 79 a~ 80 (309)
..
T Consensus 92 k~ 93 (95)
T 1ufw_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=5.2e-08 Score=85.03 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=54.0
Q ss_pred CcHHHHHHHHHhcCCeeEEEEe------------CCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 22 TRSRDLEEIFSRYGRIRDVDMK------------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 22 ~te~dL~~~F~~~G~v~~~~i~------------~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
-.+++|.+.|.+||+|..+.|. +||+||+|.+.++|++||+.|||.+|+|+.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568899999999999999985 2599999999999999999999999999999999975
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=4.9e-07 Score=69.75 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhc-----CCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCccccCCCceeeee
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRY-----GRIRDVDMKRD--FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~-----G~v~~~~i~~~--~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~ 78 (309)
....+|-|-|||..|+...|+.|+..+ |.|..+.+..+ -|+|+|.+...|.+|.-.|||.+|+|++|.|.-
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 346788899999999999999999999 99999988764 899999999999999989999999999999863
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=3.4e-06 Score=64.62 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCC-c----HHHHHHHHHhcCCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCccccCCCceeeeeccC
Q 021642 9 GGTRLYVGRLASRT-R----SRDLEEIFSRYGRIRDVDMKRD--FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (309)
Q Consensus 9 ~~~~v~V~nL~~~~-t----e~dL~~~F~~~G~v~~~~i~~~--~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~~ 81 (309)
..++|+|+||+..| . .+.|+++|.+|+++..+.+.+- -..|.|.+.++|.+|-..||++.|+|..|+|-++..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 45789999998766 2 2577999999999988888775 568999999999999999999999999999999884
No 212
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=1.6e-06 Score=60.84 Aligned_cols=43 Identities=33% Similarity=0.702 Sum_probs=38.2
Q ss_pred CCCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 143 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~~ 143 (309)
...||+||..||++.+|+.......||.|++.||++++|+...
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGGG
T ss_pred CCcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCcc
Confidence 3569999999999999998766789999999999999998743
No 213
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.18 E-value=2.6e-06 Score=56.60 Aligned_cols=42 Identities=40% Similarity=1.057 Sum_probs=36.4
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCC
Q 021642 100 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 100 g~~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
....||+||..||++.+|+... ...||.|+..||+.++|+..
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~~-~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAPR-RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCSS-CCSCSSSCCSSCCGGGCCSS
T ss_pred CcCeeeecCCCCcChhhCcCCC-CCeeCcCCCcCCccCCCcCC
Confidence 3467999999999999999853 46899999999999999763
No 214
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.17 E-value=1.7e-06 Score=62.58 Aligned_cols=42 Identities=33% Similarity=0.717 Sum_probs=37.8
Q ss_pred CCCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
...||+||..|||+.+|+.......||.|++.||++++|+..
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTTG
T ss_pred CCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcCC
Confidence 467999999999999999876678999999999999999764
No 215
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.15 E-value=1.7e-06 Score=54.61 Aligned_cols=38 Identities=39% Similarity=0.970 Sum_probs=33.7
Q ss_pred CCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCC
Q 021642 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 103 rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~ 141 (309)
.||+||..||++.+|+.. ....||.|++.||++++|++
T Consensus 2 ~C~~Cg~~GH~a~~C~~~-~~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP-RQEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC-CCSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCC-CCCccccCCCCCCccCcCcC
Confidence 599999999999999975 35689999999999999863
No 216
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.15 E-value=2.1e-06 Score=59.82 Aligned_cols=43 Identities=28% Similarity=0.842 Sum_probs=36.8
Q ss_pred CCCCccCCCCCCCCCCCCCCCC----ccccccCCCCccccccCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGDW----KNKCYRCGERGHIERNCQNSP 143 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~~----~~~c~~cg~~gh~sr~~~~~~ 143 (309)
...||+||..|||+.+|+.... ...||.|++.||++++|+...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 4679999999999999998643 257999999999999998643
No 217
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.09 E-value=1e-06 Score=61.09 Aligned_cols=42 Identities=33% Similarity=0.892 Sum_probs=18.8
Q ss_pred CCCccCCCCCCCCCCCCCCC-------CccccccCCCCccccccCCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAGD-------WKNKCYRCGERGHIERNCQNSP 143 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~~-------~~~~c~~cg~~gh~sr~~~~~~ 143 (309)
..||+||..|||+++|+... ....||.|++.||++++|+...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp ---------------------------CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCcc
Confidence 35999999999999999764 3578999999999999998743
No 218
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.08 E-value=2.9e-06 Score=52.93 Aligned_cols=36 Identities=36% Similarity=1.155 Sum_probs=32.7
Q ss_pred CCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCC
Q 021642 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 103 rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~ 141 (309)
.||+||..||++.+|+.. ..||.|++.||++++|++
T Consensus 2 ~C~~Cg~~GH~~~~C~~~---~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP---KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB---TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc---CeEccCCCcCCccCcCcC
Confidence 599999999999999975 589999999999999863
No 219
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=4.1e-05 Score=58.42 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHh-----cCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSR-----YGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~-----~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
....+|.|.|||..+.++.|.-+|++ =|+|..+....+-|+|+|.+.+.|+..|.+ ..+.|++..|.|....
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 45789999999999999999999987 258999998889999999999999999843 4578888888887644
No 220
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.00 E-value=3.9e-06 Score=57.12 Aligned_cols=41 Identities=41% Similarity=1.138 Sum_probs=36.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
...||+||..||++.+|+.. ....||.|++.||++++|+..
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~-~~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAP-RKKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSC-SCCBCTTTCCBSSCGGGCSSS
T ss_pred CcceeeeCCCCcChhhcCCC-CCCEeCCCCCcCCccCCCcCc
Confidence 46799999999999999975 356899999999999999764
No 221
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.76 E-value=5.9e-05 Score=56.64 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=54.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC----------eEEEEECCHHHHHHHHHhcCccccCC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----------FAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~----------~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
++|.|-+||+.+||+++.+.+..+.++.+.....| -|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 68999999999999999999999988888777544 79999999999999999999998743
No 222
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00014 Score=57.15 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCccccCC-Cceeeee
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDG-SRIIVEF 78 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~lng~~l~G-r~I~V~~ 78 (309)
+....+-|.|-+++... ...|..+|.+||+|...... .++-.|.|.+..+|++|| ..||..|+| ..|-|..
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 45567889999999875 56778889999999998884 359999999999999999 669999985 4455544
No 223
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.41 E-value=7.1e-05 Score=55.22 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=20.9
Q ss_pred CccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCC
Q 021642 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 104 c~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
||+|+..||++++|........||+||..||+.++|+..
T Consensus 27 cY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 27 AYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CCCBC-------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred ccccccCCcccccccCCCCCCeecccCCCCcCcccCCcc
Confidence 455555555555554444457899999999999999874
No 224
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.40 E-value=0.00055 Score=51.64 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=46.4
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhc
Q 021642 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 5 dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~l 64 (309)
|..+....||+-++|..+...||.++|..||.|.--.|.-.-|||.|.+.+.|..||..|
T Consensus 10 d~~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 10 DLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEeCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhc
Confidence 334444455555999999999999999999955433334459999999999999999765
No 225
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.25 E-value=0.00024 Score=53.70 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC----------eEEEEECCHHHHHHHHHhcCccccCCC-----c
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----------FAFVEFSDPRDADDARYSLNGRDVDGS-----R 73 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~----------~afV~F~~~~~a~~Al~~lng~~l~Gr-----~ 73 (309)
-.-+|.|-.||+.+||+++.+.+..+-++.+.....| -|||.|.+.+++..-.+.++|..|.+. .
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4568999999999999998887776655555444333 789999999999999999999987543 2
Q ss_pred eeeeecc
Q 021642 74 IIVEFAR 80 (309)
Q Consensus 74 I~V~~a~ 80 (309)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 3456653
No 226
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.0008 Score=50.89 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=42.4
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~ln 65 (309)
.++| ++|..+...||.++|..||.|.--.|--.-|||.|.+.+.|..||..|.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999999443223334599999999999999997664
No 227
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.90 E-value=0.0008 Score=53.56 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=53.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEE---------------------eCCeEEEEECCHHHHHHHHHhcCc
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDM---------------------KRDFAFVEFSDPRDADDARYSLNG 66 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~-~~i---------------------~~~~afV~F~~~~~a~~Al~~lng 66 (309)
..+-|.|-+.|+...+ .|.++|++||.|++ +.+ -.++..|+|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 4567888888877655 45677999999977 211 1247799999999999999 6799
Q ss_pred cccCCCceeeeecc
Q 021642 67 RDVDGSRIIVEFAR 80 (309)
Q Consensus 67 ~~l~Gr~I~V~~a~ 80 (309)
..|+|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877776654
No 228
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00087 Score=53.02 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=33.7
Q ss_pred CCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
..||+|+..||++.+|+.......||.|++.||+.++|+..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCTTTCCCS
T ss_pred ccccccCCCCCccccCcCcccCccCCCCCcCCcchhhCCCc
Confidence 46888888889888888765567899999999999988753
No 229
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.00097 Score=52.76 Aligned_cols=41 Identities=27% Similarity=0.643 Sum_probs=35.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCC-------------------ccccccCCCCccccccCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGDW-------------------KNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~~-------------------~~~c~~cg~~gh~sr~~~~ 141 (309)
...||+||..||++.+|+.... ...||+|++.||++++|+.
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred CccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 3679999999999999996421 3579999999999999975
No 230
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.80 E-value=0.0012 Score=41.57 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=18.7
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCC
Q 021642 97 PPPGSGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 97 ~~~g~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
++.....||+||..|||+++|+...
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCCCeeeECCCCCcchhhCcCCc
Confidence 3444567888888888888888754
No 231
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.36 E-value=0.0019 Score=36.71 Aligned_cols=19 Identities=53% Similarity=1.148 Sum_probs=15.3
Q ss_pred CCCccCCCCCCCCCCCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAG 120 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~ 120 (309)
..||+||..|||+++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4688888888888888864
No 232
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.27 E-value=0.0029 Score=42.82 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=17.2
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCC
Q 021642 97 PPPGSGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 97 ~~~g~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
.......||+||..|||++||+...
T Consensus 19 ~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCcceeCCCCCcccccCcCCc
Confidence 3344567888888888888887643
No 233
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.03 E-value=0.0034 Score=60.47 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=39.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHH
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARY 62 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~---~afV~F~~~~~a~~Al~ 62 (309)
..|||. ++..+++.+|.++|.+||.|..+.+-+. ||+|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 679997 7889999999999999999999988653 99999999999887763
No 234
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0036 Score=45.99 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCCccCCCCCCCCCCCCCCCCccccccCCCCccccccCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~~~~~~c~~cg~~gh~sr~~~~~ 142 (309)
..||+|+..||++.+|+... .||.|+..+|+.++|...
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~---rcY~c~~~gh~~~~c~~p 43 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIW---RAYILVDDNEKAKPKVLP 43 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGT---CCCCBC------------
T ss_pred CCCCCCCCCCCccccCCCcc---cccccccCCcccccccCC
Confidence 46999999999999999743 699999999999888653
No 235
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.70 E-value=0.0043 Score=44.54 Aligned_cols=33 Identities=24% Similarity=0.602 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCC---------CccccccCCCCccccccCCCC
Q 021642 110 DGHWARDCKAGD---------WKNKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 110 ~Gh~a~dc~~~~---------~~~~c~~cg~~gh~sr~~~~~ 142 (309)
.||+++||+... ....||+|++.||+.++|+..
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSC
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCC
Confidence 479999998642 456899999999999999864
No 236
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=95.28 E-value=0.012 Score=34.15 Aligned_cols=19 Identities=58% Similarity=1.228 Sum_probs=13.1
Q ss_pred CCCccCCCCCCCCCCCCCC
Q 021642 102 GRCFNCGIDGHWARDCKAG 120 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~~ 120 (309)
..||+||..||++++|+..
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4577777777777777654
No 237
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.00 E-value=0.013 Score=39.46 Aligned_cols=19 Identities=37% Similarity=1.097 Sum_probs=16.3
Q ss_pred CCCCccCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKA 119 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~ 119 (309)
...||.||..|||+++|+.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 4569999999999999984
No 238
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=94.90 E-value=0.016 Score=36.36 Aligned_cols=24 Identities=29% Similarity=0.908 Sum_probs=20.5
Q ss_pred ccccccCCCCccccccCCCCCCCC
Q 021642 123 KNKCYRCGERGHIERNCQNSPKKL 146 (309)
Q Consensus 123 ~~~c~~cg~~gh~sr~~~~~~~~~ 146 (309)
...||.|++.||++++|+...++.
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~~~ 33 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPRGP 33 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred CCeeeECCCCCcchhhCcCCcccC
Confidence 578999999999999999866543
No 239
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=94.69 E-value=0.099 Score=37.06 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=47.5
Q ss_pred EEEEc-cCCCCCcHHHHHHHHHhcC-----CeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 12 RLYVG-RLASRTRSRDLEEIFSRYG-----RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 12 ~v~V~-nL~~~~te~dL~~~F~~~G-----~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
+|||. +--..+...+|..+|..-+ .|-.++|...|.||+.... .+..++..|++..+.|+.|.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56774 2245678889998888654 4567888888999998864 4778889999999999999998764
No 240
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.38 E-value=0.023 Score=38.36 Aligned_cols=24 Identities=29% Similarity=0.908 Sum_probs=20.4
Q ss_pred ccccccCCCCccccccCCCCCCCC
Q 021642 123 KNKCYRCGERGHIERNCQNSPKKL 146 (309)
Q Consensus 123 ~~~c~~cg~~gh~sr~~~~~~~~~ 146 (309)
...||.||+.||+.++|+...++.
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~~~ 46 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPRGP 46 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCCSS
T ss_pred CCcceeCCCCCcccccCcCCcccc
Confidence 578999999999999998866543
No 241
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.34 E-value=0.022 Score=45.73 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCeEEEEECCHHHHHHHHHhc-CccccCCCceeeeeccC
Q 021642 44 RDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARG 81 (309)
Q Consensus 44 ~~~afV~F~~~~~a~~Al~~l-ng~~l~Gr~I~V~~a~~ 81 (309)
+|+++|+|.+.++|++||+.| ||.+|+| .|.|.++..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 469999999999999999999 9999999 999998764
No 242
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=94.13 E-value=0.24 Score=36.60 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=51.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhc
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~l 64 (309)
..+|-|-|-|||..+-..++.-.....|--.+|+.+.|.|.|.|.+.++...||++|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 346888999999999999988888889988999999999999999999999998866
No 243
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=93.59 E-value=0.032 Score=31.42 Aligned_cols=19 Identities=42% Similarity=1.256 Sum_probs=16.9
Q ss_pred cccccCCCCccccccCCCC
Q 021642 124 NKCYRCGERGHIERNCQNS 142 (309)
Q Consensus 124 ~~c~~cg~~gh~sr~~~~~ 142 (309)
..||.||+.||++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4799999999999999864
No 244
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=93.10 E-value=0.068 Score=30.86 Aligned_cols=21 Identities=33% Similarity=0.987 Sum_probs=17.9
Q ss_pred ccccccCCCCccccccCCCCC
Q 021642 123 KNKCYRCGERGHIERNCQNSP 143 (309)
Q Consensus 123 ~~~c~~cg~~gh~sr~~~~~~ 143 (309)
...||+||..||++++|+...
T Consensus 6 ~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSS
T ss_pred CCEEEECCccccCHhHCcccc
Confidence 357999999999999998653
No 245
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.69 E-value=0.078 Score=42.68 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=22.4
Q ss_pred CCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 44 RDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 44 ~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
+|||||+|.+.++|++||..+++...
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCC
Confidence 46999999999999999988876543
No 246
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=90.19 E-value=0.2 Score=33.91 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=18.6
Q ss_pred CCCCccCCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
...||+||..|||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 467999999999999999754
No 247
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.44 E-value=0.68 Score=45.01 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=43.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~ln 65 (309)
..++|+ ++..+...+|.++|..||.|.-..|-...|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 455555 888999999999999999654333344599999999999999998775
No 248
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.77 E-value=0.17 Score=33.92 Aligned_cols=20 Identities=40% Similarity=1.024 Sum_probs=17.5
Q ss_pred CccccccCCCCccccccCCC
Q 021642 122 WKNKCYRCGERGHIERNCQN 141 (309)
Q Consensus 122 ~~~~c~~cg~~gh~sr~~~~ 141 (309)
....||.||..||++++|+.
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSG
T ss_pred CCCccccCCCcCcccccCCC
Confidence 35689999999999999983
No 249
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=88.18 E-value=0.29 Score=30.08 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=16.7
Q ss_pred CCCCccCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKA 119 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~ 119 (309)
...||+||..||++++|+.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 4579999999999999974
No 250
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=87.33 E-value=0.29 Score=33.35 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.5
Q ss_pred CCCCccCCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
...||+||..||++++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 467999999999999999754
No 251
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.22 E-value=0.42 Score=32.77 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.4
Q ss_pred CCCCccCCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
...||+||..||++++|+...
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 467999999999999999754
No 252
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=86.36 E-value=0.27 Score=29.85 Aligned_cols=18 Identities=33% Similarity=1.114 Sum_probs=16.2
Q ss_pred CCCccCCCCCCCCCCCCC
Q 021642 102 GRCFNCGIDGHWARDCKA 119 (309)
Q Consensus 102 ~rc~~~G~~Gh~a~dc~~ 119 (309)
..||+||..||++++|+.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 579999999999999974
No 253
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=84.48 E-value=0.43 Score=30.92 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=17.5
Q ss_pred CCCCccCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAG 120 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~ 120 (309)
...||.||..||++++|+..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 35799999999999999864
No 254
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=83.98 E-value=0.48 Score=31.36 Aligned_cols=20 Identities=35% Similarity=0.996 Sum_probs=17.7
Q ss_pred CCCCccCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAG 120 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~ 120 (309)
...||.||..||++++|+..
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSSS
T ss_pred CCEeCCCCCcCCccCCCcCc
Confidence 45799999999999999864
No 255
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=80.48 E-value=0.91 Score=36.65 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.7
Q ss_pred CCCCccCCCCCCCCCCCCCCC
Q 021642 101 SGRCFNCGIDGHWARDCKAGD 121 (309)
Q Consensus 101 ~~rc~~~G~~Gh~a~dc~~~~ 121 (309)
...||.||..||++++|+...
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 568999999999999999754
No 256
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=75.54 E-value=9.8 Score=28.39 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=47.0
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.++..+.-+||+.-. ..||.-..+........|-..+.+|+.+||+.||-.. .-+-|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCC-cccceEEEEec
Confidence 466778888887665 5699988888888899999999999999999876542 22344444433
No 257
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=70.88 E-value=62 Score=30.32 Aligned_cols=8 Identities=0% Similarity=-0.213 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 021642 54 PRDADDAR 61 (309)
Q Consensus 54 ~~~a~~Al 61 (309)
.+++...+
T Consensus 116 e~~L~~~F 123 (437)
T 3pgw_S 116 ESKLRREF 123 (437)
T ss_pred HHHHHHHH
Confidence 33344433
No 258
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=68.55 E-value=14 Score=24.65 Aligned_cols=54 Identities=7% Similarity=-0.056 Sum_probs=41.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~--~~afV~F~~~~~a~~Al~~l 64 (309)
..+|.|.++.-..-...|+..|.. ..|..+.+.. +.+.|+|.+.+++..+|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 467889999877778889999999 8888777644 46778887666677777653
No 259
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=67.25 E-value=9.9 Score=28.07 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=42.0
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCcc
Q 021642 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~ 67 (309)
.++.-+.-++|+... ..||.-..+..+.+.-.|-..+.+|+.+||+.|+-.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhccC
Confidence 456677888887666 469999998888888999999999999999887643
No 260
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=63.52 E-value=12 Score=27.29 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=46.6
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCceeeeecc
Q 021642 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (309)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~I~V~~a~ 80 (309)
.++.-+.-++|+.-. ..||....+....+.-.|-..+.+|..+||+.|+-.. .-+-|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 456677888887665 5699999988888889999999999999998876432 23444444443
No 261
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=61.73 E-value=12 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=41.5
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCcc
Q 021642 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~ 67 (309)
.++.-+.-++|+.-. ..||....+..+.+.-.|-..+.+|+.+||+.|+-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhccC
Confidence 356677888887665 469999888888888899999999999999887643
No 262
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=60.36 E-value=14 Score=30.50 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=33.4
Q ss_pred EEEEccCCC-C--------CcHHHHHHHH--HhcCCeeEEEEe-----CCeEEEEECC-HHHHHHHH
Q 021642 12 RLYVGRLAS-R--------TRSRDLEEIF--SRYGRIRDVDMK-----RDFAFVEFSD-PRDADDAR 61 (309)
Q Consensus 12 ~v~V~nL~~-~--------~te~dL~~~F--~~~G~v~~~~i~-----~~~afV~F~~-~~~a~~Al 61 (309)
+++|-|++. . ...++|++.| ..|..+.-.-+- .++|+|+|.. ..-...|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 567788886 2 3457899977 888876644442 3489999995 44455555
No 263
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=51.96 E-value=42 Score=21.97 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=39.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEEC----CHHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFS----DPRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--~~~~afV~F~----~~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|+..+.+...|..+.+ ..+.+.|+|. +.+++..+|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46778888766667789999999888876665 4568889885 456677777653
No 264
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.04 E-value=47 Score=23.92 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=35.0
Q ss_pred EEccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHhc
Q 021642 14 YVGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 14 ~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al~~l 64 (309)
|+-.++...+..+|++++++ |+ .|..|..+ .+ -|||.+....+|.+...++
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 33346678899999999987 44 55555443 23 6999999877777654443
No 265
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=47.90 E-value=4.4 Score=28.57 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCeeEEEEeCCeEEEEECCH
Q 021642 35 GRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 35 G~v~~~~i~~~~afV~F~~~ 54 (309)
|.|++++..++||||+-.+-
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG 22 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDG 22 (74)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 78888888899999987764
No 266
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=45.82 E-value=62 Score=23.29 Aligned_cols=45 Identities=7% Similarity=0.204 Sum_probs=31.1
Q ss_pred cHHHHHHHHHh----cC-CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCcc
Q 021642 23 RSRDLEEIFSR----YG-RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 23 te~dL~~~F~~----~G-~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~ 67 (309)
.|..+++.+.+ .| +|..+.++ .||.||++...+++..+|..+.|.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 34444444442 23 46666664 589999999999998888877664
No 267
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=45.45 E-value=85 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=39.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-......|...+...-.|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788887666677899999988778777664 4688888874 35556666554
No 268
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.07 E-value=9.3 Score=26.25 Aligned_cols=20 Identities=40% Similarity=0.782 Sum_probs=16.6
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|+|+.|...+..+||.|+|
T Consensus 27 lGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEecCCcEEEEEEcc
Confidence 47788888778899999986
No 269
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=44.33 E-value=58 Score=20.58 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=36.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|...+...-.|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788886555556788888888778776664 4678888763 34556666544
No 270
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=42.69 E-value=35 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCe
Q 021642 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI 37 (309)
Q Consensus 1 ~pr~dd~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v 37 (309)
||-.-|-..+.++||.+.-.......|..++-.||..
T Consensus 1 ~p~Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 1 MPELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp --CCCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCCcchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 5666777889999998886555677899999999865
No 271
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=40.91 E-value=66 Score=20.22 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=37.9
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~---~~~a~~Al~~l 64 (309)
.++.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 60 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGL 60 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHC
Confidence 457788887666677889999988888777664 4577888864 34555666543
No 272
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=40.72 E-value=55 Score=20.97 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=38.0
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHh
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYS 63 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~---~~~a~~Al~~ 63 (309)
.+|.|.++.-..-...|+..+.....|..+.+. .+-+.|+|.. .+++..+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 467788887766678899999998888776664 4678888843 4455666654
No 273
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=40.19 E-value=30 Score=27.23 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=37.4
Q ss_pred CeeEEEEeCCeEEEEECCHHHHHHHHHh-cCccccCCCceeeeeccCCCCCCCCCCccCCCCCCCCCCCCccCCCCCC
Q 021642 36 RIRDVDMKRDFAFVEFSDPRDADDARYS-LNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGH 112 (309)
Q Consensus 36 ~v~~~~i~~~~afV~F~~~~~a~~Al~~-lng~~l~Gr~I~V~~a~~~~~~~~g~~~~~g~g~~~g~~rc~~~G~~Gh 112 (309)
.|..|.+. .|-+...+++....|++. ..|+.+.|..|.|+.... ...|.+||....
T Consensus 25 ~V~~V~l~--IG~ls~v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~-------------------~~~C~~CG~~~~ 81 (139)
T 3a43_A 25 RVKAVRVV--LGELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEA-------------------VFKCRNCNYEWK 81 (139)
T ss_dssp EEEEEEEE--EETTCCCCHHHHHHHHHHHHTTSTTTTCEEEEEEECC-------------------EEEETTTCCEEE
T ss_pred eehhHHhh--HHHHhhhhHHHHHHHHHHHHcCCcccCCEEEEEecCC-------------------cEECCCCCCEEe
Confidence 56665553 344555567777777664 367888999998887653 246888887543
No 274
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=39.58 E-value=69 Score=20.08 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=36.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~---~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|...+.....|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHc
Confidence 457788886555567788999888888777664 4578888864 34445555443
No 275
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.56 E-value=58 Score=23.29 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=34.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC-CHHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS-DPRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~-~~~~a~~Al~~l 64 (309)
.+|.|. +.-..-...|+..|.+.-.|..+.+. .+.+.|+|. +.+.+..+|+.+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHh
Confidence 445566 55444456788888888777776664 457778775 455666676544
No 276
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=39.13 E-value=4.8 Score=28.14 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=17.4
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~ 54 (309)
.|.|++++..++||||+-.+-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g 23 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGD 23 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTS
T ss_pred CEEEEEEECCCCEEEEecCCC
Confidence 478899888899999987653
No 277
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=39.07 E-value=67 Score=19.78 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=36.2
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHhc
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYSL 64 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~---~~~a~~Al~~l 64 (309)
+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHc
Confidence 56677776655667788999888778777664 4578888863 44555566543
No 278
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=38.71 E-value=13 Score=26.23 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=17.2
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~ 54 (309)
.|+|+.|....+.+||.|.|.
T Consensus 44 LGTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEeccCCCEEEEEEcCC
Confidence 378888888888999999873
No 279
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=37.70 E-value=1e+02 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.4
Q ss_pred CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCccc
Q 021642 36 RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRD 68 (309)
Q Consensus 36 ~v~~~~i~---~~~afV~F~~~~~a~~Al~~lng~~ 68 (309)
.|..+.+. +||-|||=..+.++..||+.+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 46666663 6799999999999999998776554
No 280
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.44 E-value=68 Score=23.01 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=32.8
Q ss_pred EEccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHH
Q 021642 14 YVGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDAR 61 (309)
Q Consensus 14 ~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al 61 (309)
|+-.++...+..+|++++++ |+ +|..|... .+ -|||.+....+|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 33446778899999999987 55 55555443 23 6999998776655443
No 281
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=36.92 E-value=14 Score=25.79 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.6
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~ 54 (309)
.|.|++++..++||||+-.+-
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~dg 24 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDENG 24 (74)
T ss_dssp EEEEEEEETTTTEEEEEESSS
T ss_pred ceEEEEEECCCCeEEEecCCC
Confidence 588999888999999987653
No 282
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=35.91 E-value=69 Score=26.88 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=27.4
Q ss_pred eeEEEE---eCCeEEEEECCHHHHHHHHHhcCcccc
Q 021642 37 IRDVDM---KRDFAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 37 v~~~~i---~~~~afV~F~~~~~a~~Al~~lng~~l 69 (309)
|..|.+ ++||-|||=..+.++..||+.|.+...
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 666666 468999999999999999988877643
No 283
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=35.77 E-value=61 Score=25.66 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=32.5
Q ss_pred EccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHh
Q 021642 15 VGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 15 V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al~~ 63 (309)
|--++...+..+|++++++ |+ .|..|..+ .+ -|||.+....+|.+....
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 3345677889999999887 45 55555443 23 699999877666654433
No 284
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=34.96 E-value=69 Score=23.46 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHHHhc--------CCeeEEEEe---------C----C-eEEEEECCHHHHHHHHH
Q 021642 18 LASRTRSRDLEEIFSRY--------GRIRDVDMK---------R----D-FAFVEFSDPRDADDARY 62 (309)
Q Consensus 18 L~~~~te~dL~~~F~~~--------G~v~~~~i~---------~----~-~afV~F~~~~~a~~Al~ 62 (309)
|.+.++++++..++.+| |.|..++.. + | |.++.|.....+.+.|+
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 35566777766555544 456555431 1 1 88889987666665554
No 285
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=34.84 E-value=61 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=31.8
Q ss_pred cCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHh
Q 021642 17 RLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 17 nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al~~ 63 (309)
-++...+..+|+++++. |+ .|..|..+ .+ -|||.+....+|.+....
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 35667889999999887 45 55555443 23 699999877666654433
No 286
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=34.71 E-value=1.2e+02 Score=23.09 Aligned_cols=43 Identities=5% Similarity=-0.073 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhcCc
Q 021642 24 SRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNG 66 (309)
Q Consensus 24 e~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~~lng 66 (309)
.+++.+.+..+-+|..|....| ++.|.+.+.+++...+..|.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 5678888889999999987654 677889999999998877754
No 287
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=34.64 E-value=1e+02 Score=20.58 Aligned_cols=55 Identities=5% Similarity=0.154 Sum_probs=39.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC----CHHHHHHHHHhc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS----DPRDADDARYSL 64 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~----~~~~a~~Al~~l 64 (309)
..+|.|.++.-......|+..+.....|..+.+. .+.+.|+|. +.+.+..+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3567788887766677799999998888777764 458888885 345566666554
No 288
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.77 E-value=77 Score=25.50 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=33.0
Q ss_pred EEccCCCCCcHHHHHHHHHh-cC-CeeEEEEeC---C--eEEEEECCHHHHHHHHHh
Q 021642 14 YVGRLASRTRSRDLEEIFSR-YG-RIRDVDMKR---D--FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 14 ~V~nL~~~~te~dL~~~F~~-~G-~v~~~~i~~---~--~afV~F~~~~~a~~Al~~ 63 (309)
||-.++...+..||+++++. |+ .|..|..+. + -|||.+....++.+....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 33346678889999999986 55 555655432 3 699999877665544433
No 289
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=33.52 E-value=85 Score=21.63 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=37.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-......|...+...-.|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 467787776555566788889888888776664 4688888863 45566666554
No 290
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=32.80 E-value=88 Score=19.30 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=38.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.++.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 61 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINEL 61 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 367888887777778899999988778776664 4688888863 34555666543
No 291
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=32.72 E-value=59 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=31.1
Q ss_pred cCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHh
Q 021642 17 RLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYS 63 (309)
Q Consensus 17 nL~~~~te~dL~~~F~~-~G-~v~~~~i~---~~--~afV~F~~~~~a~~Al~~ 63 (309)
.++...+..+|+++++. |+ .|..|..+ .+ -|||.+....+|.+....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 35667788888888876 44 55555443 23 699999877666655433
No 292
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=32.59 E-value=17 Score=29.04 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=18.3
Q ss_pred hcCCeeEEEEeCCeEEEEECCH
Q 021642 33 RYGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 33 ~~G~v~~~~i~~~~afV~F~~~ 54 (309)
..|.|++++..+|||||+-.+-
T Consensus 63 ~~GtVKwFn~~KGfGFI~~ddG 84 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPADG 84 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESSS
T ss_pred cceEEEEEeCCCCeEEeccCCC
Confidence 4588888888899999998763
No 293
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=32.45 E-value=1e+02 Score=19.96 Aligned_cols=55 Identities=9% Similarity=0.237 Sum_probs=39.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--~~~~afV~F~~----~~~a~~Al~~l 64 (309)
..+|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|.. .+.+..+|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 456788898877777889999988877765554 45688888864 35556666554
No 294
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=32.21 E-value=79 Score=19.89 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=35.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--~~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|+..+.....|..+.+ ..+.+.|.|.. .+.+..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 35677777654455678888888777766555 45688888863 34556666544
No 295
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=32.08 E-value=16 Score=26.72 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=16.1
Q ss_pred HhcCCeeEEEEeCCeEEEEE
Q 021642 32 SRYGRIRDVDMKRDFAFVEF 51 (309)
Q Consensus 32 ~~~G~v~~~~i~~~~afV~F 51 (309)
..-|.|++.+..++|+||+-
T Consensus 8 r~tG~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEe
Confidence 34588888888899999963
No 296
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=31.72 E-value=97 Score=19.43 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=38.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-......|...+.....|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 457788887766777899999988888776664 4578888863 44556666554
No 297
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.71 E-value=8.8 Score=25.99 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=14.0
Q ss_pred CCeeEEEEeCCeEEEEECC
Q 021642 35 GRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 35 G~v~~~~i~~~~afV~F~~ 53 (309)
|+|+.|...+..+||.|++
T Consensus 26 gtV~kV~~~~~~ClV~FeD 44 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFED 44 (63)
T ss_dssp EEECCCCSTTSEEEEEETT
T ss_pred EEEEEEecCCCEEEEEEcc
Confidence 5566666666789999986
No 298
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=31.71 E-value=88 Score=24.68 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=26.6
Q ss_pred HHHHHHhcCCeeEEEEe-----CC------------------eEEEEECCHHHHHHHHH
Q 021642 27 LEEIFSRYGRIRDVDMK-----RD------------------FAFVEFSDPRDADDARY 62 (309)
Q Consensus 27 L~~~F~~~G~v~~~~i~-----~~------------------~afV~F~~~~~a~~Al~ 62 (309)
.-++|..||.+..++.. .+ |.+|+|.+.+...++..
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 35778899988776652 11 99999999988777653
No 299
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=31.43 E-value=86 Score=28.88 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=39.9
Q ss_pred EEEccCCCCC----cHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCC
Q 021642 13 LYVGRLASRT----RSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGS 72 (309)
Q Consensus 13 v~V~nL~~~~----te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr 72 (309)
-+||||..-. .+..+.++..+||.|..+.+. +.-+|...+.+.++.++.+ ++..+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG-TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET-TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC-CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 4688876432 246778888899999888763 3556777889988888743 44444443
No 300
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=31.43 E-value=75 Score=20.04 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=34.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHh
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYS 63 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~~~a~~Al~~ 63 (309)
.+|.|.++.-..-...|...+... .|..+.+. .+.+.|+|...+.+..+|+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHHT
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 356677776554556788888888 77666554 46888888765445555544
No 301
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=31.38 E-value=55 Score=23.72 Aligned_cols=51 Identities=6% Similarity=-0.042 Sum_probs=34.9
Q ss_pred EEEccCCCCCcHHHHHHHHHhcCCe-----eEEEEeC-CeEEEEECCHHHHHHHHHh
Q 021642 13 LYVGRLASRTRSRDLEEIFSRYGRI-----RDVDMKR-DFAFVEFSDPRDADDARYS 63 (309)
Q Consensus 13 v~V~nL~~~~te~dL~~~F~~~G~v-----~~~~i~~-~~afV~F~~~~~a~~Al~~ 63 (309)
|++..++..++.++|.+.+...-.+ ..++.+- .--+|++.+.++.+.||..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHH
Confidence 5566778899999988777643222 2233322 2567899999999999863
No 302
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.38 E-value=99 Score=20.97 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=40.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHHhcCcccc
Q 021642 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDV 69 (309)
Q Consensus 6 d~~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~---~afV~F~~~~~a~~Al~~lng~~l 69 (309)
.......|.|+-+.....-+.|..-+...|--..+.-... .-+--|.+.++|..++..|...-|
T Consensus 5 ~~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 5 SSSGLYKVQIGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3445677888888776666777777766664333321122 233478899999999888765444
No 303
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=30.72 E-value=1.1e+02 Score=19.58 Aligned_cols=54 Identities=9% Similarity=0.232 Sum_probs=37.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-......|+..+...-.|..+.+. .+.+.|.|.. .+.+..+|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 356777876555567788889888888776664 4588888863 35556666554
No 304
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=30.65 E-value=21 Score=24.29 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=17.0
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++.+..++|+||+-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCeEEEecCC
Confidence 47888888889999998765
No 305
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=36.55 E-value=11 Score=26.07 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=17.2
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++++..++||||+-.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 6 VGKVKWYNSTKNFGFIEQDN 25 (70)
Confidence 48899988899999998765
No 306
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=36.36 E-value=11 Score=27.96 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=35.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE-------------------------eCCeEEEEECCHHHHHHHHHh
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM-------------------------KRDFAFVEFSDPRDADDARYS 63 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i-------------------------~~~~afV~F~~~~~a~~Al~~ 63 (309)
.+|-|-|-|+|..+-..++.-.....|--.+|+. ..|.|+|.|.+.++...||++
T Consensus 17 qnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiqk 96 (137)
T 2lsl_A 17 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQK 96 (137)
Confidence 3566778888887766555433333332222211 124889999998888888876
Q ss_pred c
Q 021642 64 L 64 (309)
Q Consensus 64 l 64 (309)
|
T Consensus 97 l 97 (137)
T 2lsl_A 97 L 97 (137)
Confidence 5
No 307
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=29.96 E-value=22 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=17.3
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021642 34 YGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~~ 54 (309)
.|.|++++..++||||+-.+-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g 23 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGG 23 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTE
T ss_pred ceEEEEEECCCCeEEEecCCC
Confidence 478888888899999987653
No 308
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=29.82 E-value=68 Score=23.96 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCCCCcHHHHHHHHHhc-------C-CeeEEEEe----------C---C-eEEEEECC-HHHHHHHHH
Q 021642 18 LASRTRSRDLEEIFSRY-------G-RIRDVDMK----------R---D-FAFVEFSD-PRDADDARY 62 (309)
Q Consensus 18 L~~~~te~dL~~~F~~~-------G-~v~~~~i~----------~---~-~afV~F~~-~~~a~~Al~ 62 (309)
|.+.++++++..++.+| | .|..++.. + | |.++.|.. ...+.+.|+
T Consensus 16 l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~ele 83 (110)
T 2j5a_A 16 VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELD 83 (110)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHH
Confidence 35566777766555544 3 55555431 1 1 88889987 555555544
No 309
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.76 E-value=1.7e+02 Score=22.35 Aligned_cols=46 Identities=9% Similarity=-0.017 Sum_probs=36.1
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHH
Q 021642 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARY 62 (309)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~ 62 (309)
.+......+++.+.+..+-+|..|....| +..|.+.+.++....+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~l~ 124 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLI 124 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHHHHHHHHH
Confidence 34433346788889999999999998776 67789999999888773
No 310
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=29.66 E-value=1.1e+02 Score=19.36 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCH----HHHHHHHHh
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDP----RDADDARYS 63 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~~----~~a~~Al~~ 63 (309)
...+|.|.++.-......|...+.....|..+.+. .+.+.|.|... +.+..+|+.
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHH
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678899998777778899999988888777664 45888888642 334455544
No 311
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=29.55 E-value=1e+02 Score=19.93 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=37.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|+..+.....|..+.+. .+.+.|.|.. .+.+..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788887666677889999888777776553 4578888863 34556666544
No 312
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.26 E-value=8.5 Score=28.07 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.5
Q ss_pred hcCCeeEEEEeCCeEEEEECCH
Q 021642 33 RYGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 33 ~~G~v~~~~i~~~~afV~F~~~ 54 (309)
..|.|++++ ++|+||+-.+-
T Consensus 19 ~~G~Vkwf~--KGfGFI~~ddg 38 (89)
T 1wfq_A 19 ETGVIEKLL--TSYGFIQCSER 38 (89)
T ss_dssp EEEEEEEEC--SSEEEEEETTT
T ss_pred cceEEEEEe--CCeeEEecCCC
Confidence 368888875 89999987653
No 313
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=29.08 E-value=44 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHhcCCeeEEEEeCCeEE
Q 021642 22 TRSRDLEEIFSRYGRIRDVDMKRDFAF 48 (309)
Q Consensus 22 ~te~dL~~~F~~~G~v~~~~i~~~~af 48 (309)
.+++.|.++|..+|+|+.-.++-+|||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEEE
Confidence 467789999999999998877655443
No 314
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=28.46 E-value=1.6e+02 Score=22.01 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=25.7
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEEC----CHHHHHHHHHh
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFS----DPRDADDARYS 63 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--~~~~afV~F~----~~~~a~~Al~~ 63 (309)
.|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|. +.+++..+|+.
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 134 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445555544444555555555555544333 2345666664 33444555544
No 315
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.02 E-value=20 Score=25.26 Aligned_cols=20 Identities=15% Similarity=0.551 Sum_probs=16.7
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021642 34 YGRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 34 ~G~v~~~~i~~~~afV~F~~ 53 (309)
.|.|++++..++|+||+-.+
T Consensus 10 ~G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 10 LGTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEEETTTTEEEEEEGG
T ss_pred ceEEEEEECCCCcEEEecCC
Confidence 58888888889999998754
No 316
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.73 E-value=1.9e+02 Score=22.10 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=36.5
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhc
Q 021642 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~~l 64 (309)
.++. ...+++.+.+..+-+|..|....| ++.|.+.+.++....++.|
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~~~~l 124 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLI 124 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEecCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4443 356788899999999999988765 6778999999888777544
No 317
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=27.69 E-value=1.2e+02 Score=19.26 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=38.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC--HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD--PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~--~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|...+.....|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc
Confidence 467788887766677899999988878777664 4578888875 33445555443
No 318
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=27.54 E-value=53 Score=28.69 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCee
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIR 38 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~ 38 (309)
...++|+|||+.++...|..++.. ..+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCC
Confidence 356789999999999999999987 5544
No 319
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=27.17 E-value=40 Score=26.04 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeCCeEEEEECCHHH
Q 021642 9 GGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKRDFAFVEFSDPRD 56 (309)
Q Consensus 9 ~~~~v~V~nL~~~~te~dL~~~F~~~G-~v~~~~i~~~~afV~F~~~~~ 56 (309)
.+..++|-..+++..|.-|-.++.+.| +|++.+-..|.-||.|...++
T Consensus 12 ~g~p~l~l~~~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~ 60 (127)
T 2yh5_A 12 TGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD 60 (127)
T ss_dssp TSCEEEEEESCHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc
Confidence 445667778899999999999999999 788887788999999997764
No 320
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=26.51 E-value=74 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=36.6
Q ss_pred EEEccCCC---CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHh
Q 021642 13 LYVGRLAS---RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYS 63 (309)
Q Consensus 13 v~V~nL~~---~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~ 63 (309)
-+||||.. .-....|.++..+||.|..+.+ -+.-+|.+.+.+.++.++..
T Consensus 19 PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-g~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 19 PIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYV-GSQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEE-TTEEEEEECSHHHHHHHHHT
T ss_pred ccccChhhhccccHhHHHHHHHHHhCCEEEEEE-CCccEEEECCHHHHHHHHhc
Confidence 35677653 2235678888999999987765 34677888999999988854
No 321
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.38 E-value=36 Score=33.78 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=35.2
Q ss_pred cCCCCCcHHHHHHHHH----hcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhc
Q 021642 17 RLASRTRSRDLEEIFS----RYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 17 nL~~~~te~dL~~~F~----~~G~v~~~~i~~-------~~afV~F~~~~~a~~Al~~l 64 (309)
.+..+.+--||..+|. .+|-|+.+.|.. .+++|.|.+.+++..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3444455567888884 578888888742 27889999999999888654
No 322
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.35 E-value=2e+02 Score=22.84 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=36.3
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhc
Q 021642 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~~l 64 (309)
.++. ...+++.+.+..+-+|..|....| ++.|.+.+.++....++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEeeCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4543 345788889999999999988765 6778999999888776544
No 323
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=26.26 E-value=28 Score=23.51 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=16.1
Q ss_pred CCeeEEEEeCCeEEEEECC
Q 021642 35 GRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 35 G~v~~~~i~~~~afV~F~~ 53 (309)
|.|++++..++|+||+-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 6788888889999998764
No 324
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=26.24 E-value=1.2e+02 Score=18.88 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=35.9
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC---CHHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS---DPRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~---~~~~a~~Al~~l 64 (309)
.+|.|.++.-......|+..+.....|..+.+. .+.+.|+|. +.+.+..+|+.+
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 356777776555566788888888778776654 457788886 334455556543
No 325
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=26.22 E-value=60 Score=24.10 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=20.9
Q ss_pred eEEEEECCHH---HHHHHHHhcCccccCCCceeee
Q 021642 46 FAFVEFSDPR---DADDARYSLNGRDVDGSRIIVE 77 (309)
Q Consensus 46 ~afV~F~~~~---~a~~Al~~lng~~l~Gr~I~V~ 77 (309)
.-+|.|.... .+..|.......++.|..|.+.
T Consensus 64 hIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 64 HIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred eEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 5666776554 4555555555677888888775
No 326
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=25.62 E-value=1.4e+02 Score=22.14 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=28.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC----CHHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS----DPRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~----~~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|+..+...-.|..+.+. .+.+.|+|. +.+++..+|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhC
Confidence 345566655444445566666666555554443 346666665 234455555443
No 327
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.29 E-value=30 Score=23.78 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.2
Q ss_pred hcCCeeEEEEeCCeEEEEECCH
Q 021642 33 RYGRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 33 ~~G~v~~~~i~~~~afV~F~~~ 54 (309)
..|.|++++..++||||+-.+.
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g 27 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDG 27 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTC
T ss_pred ccEEEEEEECCCCcEEEecCCC
Confidence 4688999888899999987653
No 328
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.72 E-value=30 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=24.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEE
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDV 40 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~ 40 (309)
...++|+|||+.++...|..++.....+..+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~ 144 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQ 144 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEE
Confidence 3467899999999999999999765445443
No 329
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=24.66 E-value=66 Score=22.87 Aligned_cols=47 Identities=11% Similarity=0.287 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHhcCC-eeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCCCc
Q 021642 22 TRSRDLEEIFSRYGR-IRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (309)
Q Consensus 22 ~te~dL~~~F~~~G~-v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~Gr~ 73 (309)
-++++|+.++..|-. ...+. .+|...+.+...+|.+..+..+|+-+.
T Consensus 33 ktedelkkyleefrkesqnik-----vlilvsndeeldkakelaqkmeidvrt 80 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-----VLILVSNDEELDKAKELAQKMEIDVRT 80 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-----EEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHHHHhhccCeE-----EEEEEcChHHHHHHHHHHHhhceeeee
Confidence 478999999988753 22232 245566777777776544445555433
No 330
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=24.24 E-value=50 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHH-HHHHhc
Q 021642 18 LASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDAD-DARYSL 64 (309)
Q Consensus 18 L~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~-~Al~~l 64 (309)
++..+.|++|+.++.. .|.+.+.|. .+|+.|
T Consensus 2 ~~l~VPWd~Ie~lL~~----------------~~~d~~~a~~~~L~RL 33 (41)
T 3vej_A 2 VDLTVPWDDIEALLKN----------------NFENDQAAVRQVMERL 33 (41)
T ss_dssp CCTTSCHHHHHHHHHH----------------HTTTCHHHHHHHHHHH
T ss_pred ceeecCHHHHHHHHHH----------------HhcChHHHHHHHHHHH
Confidence 3456889999999875 344555664 677655
No 331
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=23.95 E-value=1.4e+02 Score=18.72 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=37.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i--~~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-......|...+...-.|..+.+ ..+.+.|+|.. .+.+..+|+.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888776667779999988877776665 34678888863 34455556543
No 332
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.53 E-value=50 Score=25.20 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEEC--CHHHHHHHH
Q 021642 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFS--DPRDADDAR 61 (309)
Q Consensus 8 ~~~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~--~~~~a~~Al 61 (309)
..+.+|+|.++. ..+.++|+.++..+|....-.|....-+|... .-..++.|+
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~ 77 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVL 77 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHH
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHH
Confidence 567899999887 55788999999999976544444443333333 333445555
No 333
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=23.44 E-value=65 Score=29.43 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHh
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSR 33 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~ 33 (309)
..++|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999999888874
No 334
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.36 E-value=37 Score=22.64 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=15.7
Q ss_pred CCeeEEEEeCCeEEEEECCH
Q 021642 35 GRIRDVDMKRDFAFVEFSDP 54 (309)
Q Consensus 35 G~v~~~~i~~~~afV~F~~~ 54 (309)
|+|+.|+...+.++|.|.+.
T Consensus 22 GtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEcCC
Confidence 67777777777999999863
No 335
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.35 E-value=1e+02 Score=21.57 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=33.2
Q ss_pred EccCCCCCcHHHHHHHH-HhcCC--------eeEEEEeC-CeEEEEECCHHHHHHHHHhc
Q 021642 15 VGRLASRTRSRDLEEIF-SRYGR--------IRDVDMKR-DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 15 V~nL~~~~te~dL~~~F-~~~G~--------v~~~~i~~-~~afV~F~~~~~a~~Al~~l 64 (309)
+--++.+++-++|.+-. .+|+. ...+++.- +--||++.+.+|...|++.+
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33467788877776544 44552 22333332 46899999999999999865
No 336
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=23.31 E-value=36 Score=23.34 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=14.8
Q ss_pred CCeeEEEEeCCeEEEEECC
Q 021642 35 GRIRDVDMKRDFAFVEFSD 53 (309)
Q Consensus 35 G~v~~~~i~~~~afV~F~~ 53 (309)
|.|+.|+...+.++|.|.+
T Consensus 32 gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEccCCcEEEEEEcc
Confidence 5667766667899999986
No 337
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=23.30 E-value=1.3e+02 Score=18.17 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=35.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~~----~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|...+...-.|..+.+. .+.+.|+|.. .+.+..+|+.+
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788776554556688888888777766654 4578888863 34455556543
No 338
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.97 E-value=1.5e+02 Score=22.14 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHH-HhcC
Q 021642 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDAR-YSLN 65 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al-~~ln 65 (309)
..+++.+.+..+.+|..|....| ++.|.+.+.++....+ +.|.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 45677888889999999987655 6678999999988887 5554
No 339
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.59 E-value=1.3e+02 Score=25.84 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=40.5
Q ss_pred CcEEEEccCCCCCc--HHHHHHHHH-----hcCCe---eEEEE---eC------------CeEEEEECC---HHHHHHHH
Q 021642 10 GTRLYVGRLASRTR--SRDLEEIFS-----RYGRI---RDVDM---KR------------DFAFVEFSD---PRDADDAR 61 (309)
Q Consensus 10 ~~~v~V~nL~~~~t--e~dL~~~F~-----~~G~v---~~~~i---~~------------~~afV~F~~---~~~a~~Al 61 (309)
-++|.|-+||.... +..+..+|. .|..+ ..+.| .+ -.-+|.|.. .+.+..|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 47899999999876 444555554 24432 11111 11 145666665 44555555
Q ss_pred HhcCccccCCCceeeee
Q 021642 62 YSLNGRDVDGSRIIVEF 78 (309)
Q Consensus 62 ~~lng~~l~Gr~I~V~~ 78 (309)
......++.|..|.+..
T Consensus 132 R~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HTTSCEEETTEEEEEEE
T ss_pred HHhcccccCCCceEEeC
Confidence 56667888998887654
No 340
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.49 E-value=64 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=21.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCe
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRI 37 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v 37 (309)
..++|+|||+.++...|..++.....+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~ 117 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAI 117 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCc
Confidence 358899999999999988888754333
No 341
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.14 E-value=1.1e+02 Score=27.84 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=35.9
Q ss_pred EEccCCC---CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCccccCC
Q 021642 14 YVGRLAS---RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71 (309)
Q Consensus 14 ~V~nL~~---~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al~~lng~~l~G 71 (309)
+||||.. .-....|.++..+||.|..+.+. +.-+|...+++.++.++.+ ++..+.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~i~~vl~~-~~~~f~~ 78 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA-WTPVVVLNGLAAVREALVT-HGEDTAD 78 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET-TEEEEEEEHHHHHHHHHTT-TGGGSCB
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC-CeeEEEECCHHHHHHHHHh-CChhhcC
Confidence 4677643 23456678888999999887763 3345666778877777632 4444433
No 342
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.97 E-value=62 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=22.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCee
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIR 38 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~ 38 (309)
..++|+|||+.++...|..++.....+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~ 123 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVP 123 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCS
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCc
Confidence 3478999999999999999987654343
No 343
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=21.89 E-value=19 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=0.0
Q ss_pred eEEEEECCHHHHHHHHHhcCccccCCC
Q 021642 46 FAFVEFSDPRDADDARYSLNGRDVDGS 72 (309)
Q Consensus 46 ~afV~F~~~~~a~~Al~~lng~~l~Gr 72 (309)
++|++|.++..+..||..|+|....|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ---------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCCC
Confidence 678888888888899988887765543
No 344
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=21.64 E-value=1.8e+02 Score=21.33 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=32.7
Q ss_pred EccCCCCCcHHHHHHHH-HhcC--------CeeEEEEeC-CeEEEEECCHHHHHHHHHhc
Q 021642 15 VGRLASRTRSRDLEEIF-SRYG--------RIRDVDMKR-DFAFVEFSDPRDADDARYSL 64 (309)
Q Consensus 15 V~nL~~~~te~dL~~~F-~~~G--------~v~~~~i~~-~~afV~F~~~~~a~~Al~~l 64 (309)
+--++..++-++|.+-. .+|+ .+..+++.- +--||.+.+.+|.+.|++.+
T Consensus 26 ~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 26 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33467888888876544 2333 123344332 34799999999999999866
No 345
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.40 E-value=2e+02 Score=19.52 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=33.9
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHH
Q 021642 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARY 62 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~ 62 (309)
..+++.+.+..+-+|.+|....| +..|.+.+.++....+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHH
Confidence 45788889999999999998876 67789999999888775
No 346
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=21.19 E-value=35 Score=23.83 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=14.8
Q ss_pred cHHHHHHHHHhcCCeeEE
Q 021642 23 RSRDLEEIFSRYGRIRDV 40 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~ 40 (309)
|--||++++.+||.|.++
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 567899999999987663
No 347
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.47 E-value=20 Score=26.89 Aligned_cols=54 Identities=9% Similarity=0.112 Sum_probs=32.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC----C---e--EEEEECCHHHHHHHHHhcCcc
Q 021642 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR----D---F--AFVEFSDPRDADDARYSLNGR 67 (309)
Q Consensus 10 ~~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~~----~---~--afV~F~~~~~a~~Al~~lng~ 67 (309)
..+|-|..+ ..+++|..|+.+.+ +..+.+.+ | | -|=.|.+.++|..|+..|...
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 345554443 34667777777765 33333321 2 2 233788999999999888644
No 348
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=20.73 E-value=98 Score=28.47 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=34.0
Q ss_pred EEccCCC---CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHH
Q 021642 14 YVGRLAS---RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDAR 61 (309)
Q Consensus 14 ~V~nL~~---~~te~dL~~~F~~~G~v~~~~i~~~~afV~F~~~~~a~~Al 61 (309)
+||||.. ......|.++..+||.|..+.+. +..+|.+.+.+.++.++
T Consensus 13 ~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~v~~~~~~~~il 62 (470)
T 2ij2_A 13 ELKNLPLLNTDKPVQALMKIADELGEIFKFEAP-GRVTRYLSSQRLIKEAC 62 (470)
T ss_dssp GGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEET-TEEEEEECCHHHHHHHT
T ss_pred ccccHHHHhcccchHHHHHHHHHhCCeEEEecC-CccEEEECCHHHHHHHH
Confidence 3677643 22355678888999999887764 55678888988888776
No 349
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=20.65 E-value=2e+02 Score=19.23 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHH
Q 021642 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARY 62 (309)
Q Consensus 23 te~dL~~~F~~~G~v~~~~i~~~----~afV~F~~~~~a~~Al~ 62 (309)
..+++.+.+..+-+|.+|....| ++.|.+.+.++....+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHH
Confidence 35788888999999999998876 67788899988887774
No 350
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=20.61 E-value=1.4e+02 Score=20.37 Aligned_cols=54 Identities=7% Similarity=-0.051 Sum_probs=34.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC-CHHHHHHHHHhc
Q 021642 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS-DPRDADDARYSL 64 (309)
Q Consensus 11 ~~v~V~nL~~~~te~dL~~~F~~~G~v~~~~i~--~~~afV~F~-~~~~a~~Al~~l 64 (309)
.+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|. +.+.+..+|+.+
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHc
Confidence 456676766544556788888887777666554 457777764 345566666553
No 351
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.39 E-value=36 Score=29.44 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=22.7
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeE
Q 021642 12 RLYVGRLASRTRSRDLEEIFSRYGRIRD 39 (309)
Q Consensus 12 ~v~V~nL~~~~te~dL~~~F~~~G~v~~ 39 (309)
-.+|+|||+.++...|..++.....+..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~ 125 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIED 125 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChhe
Confidence 3489999999999999999987655544
Done!