Query 021643
Match_columns 309
No_of_seqs 263 out of 1258
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6.5E-85 1.4E-89 646.0 21.5 278 16-299 198-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.1E-41 2.4E-46 338.1 9.2 212 71-302 17-263 (506)
3 COG2226 UbiE Methylase involve 99.7 4.8E-17 1E-21 150.6 9.1 115 143-269 34-157 (238)
4 PF01209 Ubie_methyltran: ubiE 99.6 1.8E-16 3.9E-21 146.1 6.1 116 143-269 30-154 (233)
5 PF08241 Methyltransf_11: Meth 99.6 3.1E-16 6.8E-21 120.1 6.1 89 171-266 1-95 (95)
6 PLN02233 ubiquinone biosynthes 99.6 1.1E-14 2.5E-19 135.6 8.9 97 167-269 74-183 (261)
7 PF13489 Methyltransf_23: Meth 99.4 9.5E-14 2.1E-18 116.5 5.4 94 166-270 22-117 (161)
8 PRK05785 hypothetical protein; 99.4 5.6E-13 1.2E-17 121.9 9.6 107 144-262 33-141 (226)
9 PLN02244 tocopherol O-methyltr 99.4 5.3E-13 1.2E-17 128.9 9.6 95 166-268 118-223 (340)
10 PRK10258 biotin biosynthesis p 99.4 1.2E-12 2.5E-17 120.1 10.2 95 166-268 42-140 (251)
11 PRK14103 trans-aconitate 2-met 99.4 5.7E-13 1.2E-17 122.9 7.2 96 166-268 29-126 (255)
12 KOG1540 Ubiquinone biosynthesi 99.4 1.2E-12 2.7E-17 122.0 9.1 114 164-282 98-229 (296)
13 PRK11207 tellurite resistance 99.4 1.2E-12 2.7E-17 116.9 8.6 132 167-306 31-184 (197)
14 PLN02396 hexaprenyldihydroxybe 99.4 6.1E-13 1.3E-17 128.3 6.6 95 168-269 133-236 (322)
15 PTZ00098 phosphoethanolamine N 99.3 1.3E-12 2.8E-17 121.9 6.9 98 167-269 53-157 (263)
16 TIGR02752 MenG_heptapren 2-hep 99.3 4.1E-12 9E-17 114.6 9.4 98 167-269 46-152 (231)
17 PF12847 Methyltransf_18: Meth 99.3 2.1E-12 4.5E-17 103.1 6.1 98 168-269 3-112 (112)
18 PRK11036 putative S-adenosyl-L 99.3 3.5E-12 7.7E-17 117.7 7.1 95 167-268 45-149 (255)
19 TIGR00477 tehB tellurite resis 99.3 1E-11 2.3E-16 110.8 9.5 129 167-303 31-180 (195)
20 PLN02336 phosphoethanolamine N 99.3 7.2E-12 1.6E-16 125.2 7.7 96 166-268 266-369 (475)
21 PRK00107 gidB 16S rRNA methylt 99.3 5.2E-11 1.1E-15 106.5 12.4 133 146-289 27-166 (187)
22 PF02353 CMAS: Mycolic acid cy 99.3 1.1E-11 2.5E-16 116.8 8.1 106 156-267 54-165 (273)
23 TIGR00452 methyltransferase, p 99.3 2.3E-11 5E-16 117.0 10.1 95 167-268 122-225 (314)
24 COG2227 UbiG 2-polyprenyl-3-me 99.3 8.3E-12 1.8E-16 115.5 6.5 98 167-270 60-163 (243)
25 PRK01683 trans-aconitate 2-met 99.2 2.2E-11 4.8E-16 111.9 9.1 97 166-268 31-130 (258)
26 PF08242 Methyltransf_12: Meth 99.2 1.4E-12 3E-17 102.8 0.3 90 171-264 1-99 (99)
27 TIGR02072 BioC biotin biosynth 99.2 3.2E-11 6.9E-16 107.6 8.8 96 167-268 35-135 (240)
28 PRK15068 tRNA mo(5)U34 methylt 99.2 2.4E-11 5.1E-16 117.0 8.5 95 167-268 123-226 (322)
29 smart00828 PKS_MT Methyltransf 99.2 1.3E-11 2.9E-16 110.8 6.3 95 169-269 2-105 (224)
30 PRK08317 hypothetical protein; 99.2 2.8E-11 6.1E-16 107.5 8.1 97 167-268 20-124 (241)
31 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.3E-11 2.8E-16 113.9 6.1 100 167-269 57-165 (247)
32 smart00138 MeTrc Methyltransfe 99.2 2.1E-11 4.6E-16 114.1 7.6 130 137-270 69-244 (264)
33 PF13847 Methyltransf_31: Meth 99.2 1.5E-11 3.3E-16 104.5 5.9 98 167-270 4-112 (152)
34 TIGR00740 methyltransferase, p 99.2 1.7E-11 3.6E-16 112.0 6.4 99 167-269 54-162 (239)
35 PRK11873 arsM arsenite S-adeno 99.2 2.6E-11 5.7E-16 112.5 7.7 96 167-268 78-183 (272)
36 PLN02336 phosphoethanolamine N 99.2 3.3E-11 7.2E-16 120.4 7.6 99 167-269 38-143 (475)
37 PLN02490 MPBQ/MSBQ methyltrans 99.2 7.9E-11 1.7E-15 114.5 8.8 114 167-287 114-251 (340)
38 PRK11088 rrmA 23S rRNA methylt 99.2 5.2E-11 1.1E-15 111.2 7.1 91 167-269 86-182 (272)
39 PF05401 NodS: Nodulation prot 99.1 6.8E-11 1.5E-15 106.8 6.5 106 162-270 39-148 (201)
40 PRK12335 tellurite resistance 99.1 8.7E-11 1.9E-15 110.7 7.1 115 168-290 122-257 (287)
41 TIGR00537 hemK_rel_arch HemK-r 99.1 5.3E-10 1.1E-14 97.8 11.3 116 168-290 21-163 (179)
42 PRK06202 hypothetical protein; 99.1 1.1E-10 2.5E-15 106.0 7.3 98 165-268 59-166 (232)
43 TIGR03587 Pse_Me-ase pseudamin 99.1 1.2E-10 2.6E-15 105.2 6.9 94 167-268 44-142 (204)
44 PF13649 Methyltransf_25: Meth 99.1 1.7E-11 3.7E-16 97.4 0.4 90 170-262 1-101 (101)
45 PRK00121 trmB tRNA (guanine-N( 99.1 2.6E-10 5.6E-15 102.4 7.2 123 166-290 40-179 (202)
46 PRK11705 cyclopropane fatty ac 99.1 1.9E-10 4.2E-15 113.2 7.0 94 167-268 168-267 (383)
47 PRK06922 hypothetical protein; 99.1 1.5E-10 3.2E-15 120.3 6.3 100 167-269 419-538 (677)
48 PRK08287 cobalt-precorrin-6Y C 99.1 1.2E-09 2.6E-14 96.2 10.4 119 158-287 25-151 (187)
49 TIGR00138 gidB 16S rRNA methyl 99.0 2.6E-10 5.5E-15 101.3 6.0 109 167-284 43-158 (181)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 6.5E-10 1.4E-14 98.4 7.9 99 166-269 39-144 (223)
51 PRK00517 prmA ribosomal protei 99.0 1.1E-09 2.5E-14 101.2 9.2 112 167-290 120-236 (250)
52 KOG1270 Methyltransferases [Co 99.0 3.5E-10 7.6E-15 106.0 5.8 98 168-271 91-198 (282)
53 PF07021 MetW: Methionine bios 99.0 4.9E-10 1.1E-14 100.9 6.3 91 168-267 15-108 (193)
54 PRK11188 rrmJ 23S rRNA methylt 99.0 4.1E-10 8.9E-15 102.0 5.7 129 167-298 52-205 (209)
55 TIGR00406 prmA ribosomal prote 99.0 9.7E-10 2.1E-14 103.9 8.4 136 140-288 137-279 (288)
56 PF03848 TehB: Tellurite resis 99.0 9.7E-10 2.1E-14 99.1 7.6 127 167-299 31-176 (192)
57 COG4976 Predicted methyltransf 99.0 2.1E-10 4.6E-15 105.9 3.3 132 163-300 122-286 (287)
58 TIGR02081 metW methionine bios 99.0 7.1E-10 1.5E-14 98.3 6.1 88 168-261 15-105 (194)
59 TIGR02716 C20_methyl_CrtF C-20 99.0 1.1E-09 2.4E-14 103.6 7.6 100 165-269 148-255 (306)
60 PRK00216 ubiE ubiquinone/menaq 98.9 1.8E-09 4E-14 96.5 7.6 97 167-268 52-158 (239)
61 TIGR02469 CbiT precorrin-6Y C5 98.9 3.2E-09 7E-14 85.4 8.2 93 167-267 20-121 (124)
62 TIGR00438 rrmJ cell division p 98.9 1.4E-09 3E-14 96.0 6.3 98 167-267 33-145 (188)
63 TIGR02021 BchM-ChlM magnesium 98.9 4.9E-09 1.1E-13 94.4 9.5 100 166-269 55-159 (219)
64 PRK00377 cbiT cobalt-precorrin 98.9 9.6E-09 2.1E-13 91.6 11.0 142 139-289 13-167 (198)
65 COG2230 Cfa Cyclopropane fatty 98.9 4.2E-09 9.1E-14 100.0 9.0 100 158-267 66-175 (283)
66 PRK04266 fibrillarin; Provisio 98.9 1.1E-08 2.3E-13 94.2 11.1 99 160-266 68-174 (226)
67 PRK14968 putative methyltransf 98.9 1.2E-08 2.6E-13 88.3 10.1 117 167-289 24-170 (188)
68 TIGR01983 UbiG ubiquinone bios 98.9 4.6E-09 9.9E-14 94.0 7.4 96 167-269 46-150 (224)
69 PRK07580 Mg-protoporphyrin IX 98.9 5.7E-09 1.2E-13 93.6 7.7 97 167-268 64-166 (230)
70 TIGR00091 tRNA (guanine-N(7)-) 98.9 6.2E-09 1.4E-13 92.7 7.8 114 167-281 17-146 (194)
71 COG4106 Tam Trans-aconitate me 98.8 8.2E-09 1.8E-13 94.8 7.8 133 162-305 26-192 (257)
72 PRK05134 bifunctional 3-demeth 98.8 8.3E-09 1.8E-13 93.3 7.6 97 166-269 48-152 (233)
73 TIGR03840 TMPT_Se_Te thiopurin 98.8 7.7E-09 1.7E-13 94.2 7.0 95 168-267 36-151 (213)
74 PRK13255 thiopurine S-methyltr 98.8 1.1E-08 2.3E-13 93.6 7.9 95 168-266 39-153 (218)
75 PF08003 Methyltransf_9: Prote 98.8 1.9E-08 4.1E-13 96.4 9.0 96 167-267 116-218 (315)
76 PRK15001 SAM-dependent 23S rib 98.8 2.8E-08 6.1E-13 98.0 9.4 111 168-281 230-355 (378)
77 KOG3010 Methyltransferase [Gen 98.8 7.3E-09 1.6E-13 96.2 4.8 113 167-286 34-158 (261)
78 PRK09328 N5-glutamine S-adenos 98.7 7E-08 1.5E-12 89.1 10.6 129 167-299 109-275 (275)
79 TIGR03534 RF_mod_PrmC protein- 98.7 3.2E-08 7E-13 89.7 8.1 115 168-286 89-235 (251)
80 cd02440 AdoMet_MTases S-adenos 98.7 2.5E-08 5.4E-13 74.9 6.1 94 169-267 1-103 (107)
81 PTZ00146 fibrillarin; Provisio 98.7 1.9E-08 4.2E-13 96.0 6.7 101 160-267 128-236 (293)
82 PRK13944 protein-L-isoaspartat 98.7 2E-08 4.4E-13 90.3 6.3 91 167-268 73-173 (205)
83 KOG4300 Predicted methyltransf 98.7 1.7E-08 3.6E-13 92.3 5.4 97 167-270 77-184 (252)
84 PRK14967 putative methyltransf 98.7 6.7E-08 1.5E-12 87.7 9.4 114 168-286 38-178 (223)
85 PLN02232 ubiquinone biosynthes 98.7 1.6E-08 3.4E-13 87.7 5.0 70 196-269 2-82 (160)
86 TIGR00536 hemK_fam HemK family 98.7 7E-08 1.5E-12 91.0 9.7 129 168-300 116-283 (284)
87 TIGR03438 probable methyltrans 98.7 1.9E-08 4.2E-13 95.7 5.7 99 167-267 64-176 (301)
88 PRK09489 rsmC 16S ribosomal RN 98.7 6.1E-08 1.3E-12 94.4 9.2 125 168-296 198-331 (342)
89 PF05175 MTS: Methyltransferas 98.7 1.4E-07 3E-12 82.4 10.3 111 167-281 32-155 (170)
90 PRK14121 tRNA (guanine-N(7)-)- 98.7 6.9E-08 1.5E-12 95.5 9.4 111 168-280 124-248 (390)
91 COG2264 PrmA Ribosomal protein 98.7 1.6E-07 3.5E-12 89.9 11.2 117 166-290 162-286 (300)
92 KOG2361 Predicted methyltransf 98.7 5.7E-08 1.2E-12 90.4 7.4 101 168-269 73-184 (264)
93 KOG1541 Predicted protein carb 98.6 6.6E-08 1.4E-12 89.2 7.1 119 159-281 43-173 (270)
94 PF05148 Methyltransf_8: Hypot 98.6 1.4E-07 3E-12 86.3 8.8 106 167-290 73-183 (219)
95 PLN02585 magnesium protoporphy 98.6 6.4E-08 1.4E-12 93.3 6.7 95 167-266 145-248 (315)
96 PRK13942 protein-L-isoaspartat 98.6 8E-08 1.7E-12 87.0 6.5 91 167-268 77-176 (212)
97 PF06325 PrmA: Ribosomal prote 98.6 1.3E-07 2.9E-12 90.4 7.9 148 140-300 139-295 (295)
98 PRK14966 unknown domain/N5-glu 98.6 2.5E-07 5.4E-12 92.4 10.1 131 168-300 253-419 (423)
99 TIGR00080 pimt protein-L-isoas 98.6 1E-07 2.2E-12 86.0 6.6 90 167-267 78-176 (215)
100 PF00891 Methyltransf_2: O-met 98.6 7.5E-08 1.6E-12 87.9 5.2 101 162-269 96-200 (241)
101 PRK07402 precorrin-6B methylas 98.5 4.4E-07 9.6E-12 80.5 9.4 110 167-284 41-159 (196)
102 TIGR03533 L3_gln_methyl protei 98.5 2.3E-07 5E-12 87.8 7.9 114 167-285 122-267 (284)
103 TIGR01177 conserved hypothetic 98.5 2.3E-07 5E-12 89.2 7.8 112 167-285 183-309 (329)
104 COG4123 Predicted O-methyltran 98.5 4.2E-07 9.1E-12 85.0 8.7 121 167-289 45-191 (248)
105 PRK11805 N5-glutamine S-adenos 98.5 4.6E-07 1E-11 86.9 8.6 111 168-283 135-277 (307)
106 PF13659 Methyltransf_26: Meth 98.5 1E-07 2.3E-12 76.6 3.2 97 169-267 3-114 (117)
107 PLN03075 nicotianamine synthas 98.5 4.8E-07 1E-11 86.7 8.1 132 166-301 123-276 (296)
108 PRK00312 pcm protein-L-isoaspa 98.5 5.3E-07 1.1E-11 80.9 7.8 88 167-269 79-176 (212)
109 PF03291 Pox_MCEL: mRNA cappin 98.4 2.8E-07 6E-12 89.5 5.8 132 144-278 40-198 (331)
110 COG2890 HemK Methylase of poly 98.4 1.3E-06 2.8E-11 82.9 9.3 113 169-285 113-255 (280)
111 TIGR00563 rsmB ribosomal RNA s 98.4 1.2E-06 2.5E-11 87.3 9.1 114 167-281 239-385 (426)
112 TIGR03704 PrmC_rel_meth putati 98.4 1E-06 2.2E-11 82.1 8.1 120 168-290 88-238 (251)
113 PRK01544 bifunctional N5-gluta 98.4 1.3E-06 2.9E-11 89.1 9.1 116 167-287 139-288 (506)
114 KOG3045 Predicted RNA methylas 98.3 8.2E-07 1.8E-11 83.7 5.8 105 167-290 181-289 (325)
115 PRK04457 spermidine synthase; 98.3 3E-06 6.6E-11 79.4 9.3 131 166-299 66-216 (262)
116 PRK10901 16S rRNA methyltransf 98.3 2.2E-06 4.7E-11 85.5 8.7 113 167-281 245-389 (427)
117 PF05891 Methyltransf_PK: AdoM 98.3 1.2E-06 2.6E-11 80.5 6.1 121 166-289 55-198 (218)
118 PRK00811 spermidine synthase; 98.3 1.1E-06 2.5E-11 83.1 5.7 99 165-267 75-190 (283)
119 PRK14902 16S rRNA methyltransf 98.3 2.9E-06 6.3E-11 84.9 8.8 116 167-282 251-397 (444)
120 PF02390 Methyltransf_4: Putat 98.3 1.5E-06 3.2E-11 78.3 6.1 113 169-282 20-148 (195)
121 PF05219 DREV: DREV methyltran 98.3 2.4E-06 5.1E-11 80.5 7.3 91 166-267 94-187 (265)
122 COG0500 SmtA SAM-dependent met 98.2 6.8E-06 1.5E-10 62.6 8.1 94 170-270 52-157 (257)
123 PLN02781 Probable caffeoyl-CoA 98.2 5.8E-06 1.3E-10 76.3 8.9 127 166-300 68-233 (234)
124 PRK14901 16S rRNA methyltransf 98.2 5E-06 1.1E-10 83.1 9.1 114 167-282 253-402 (434)
125 PRK01581 speE spermidine synth 98.2 9.7E-06 2.1E-10 79.9 10.7 103 165-269 149-269 (374)
126 PRK14904 16S rRNA methyltransf 98.2 5E-06 1.1E-10 83.3 8.7 113 167-282 251-395 (445)
127 PF06080 DUF938: Protein of un 98.2 7.5E-06 1.6E-10 74.7 9.0 128 169-299 28-204 (204)
128 PRK14903 16S rRNA methyltransf 98.2 2.2E-06 4.8E-11 85.8 6.1 113 167-281 238-383 (431)
129 PF01739 CheR: CheR methyltran 98.2 4.6E-06 1E-10 75.4 6.8 127 140-270 4-177 (196)
130 PRK11783 rlmL 23S rRNA m(2)G24 98.1 5.2E-06 1.1E-10 87.8 7.7 119 168-289 540-677 (702)
131 TIGR00446 nop2p NOL1/NOP2/sun 98.1 6.9E-06 1.5E-10 76.9 7.0 101 167-269 72-200 (264)
132 KOG2940 Predicted methyltransf 98.1 1.3E-06 2.9E-11 81.2 2.1 96 167-267 73-173 (325)
133 KOG1975 mRNA cap methyltransfe 98.1 6.7E-06 1.5E-10 79.6 6.7 118 166-286 117-256 (389)
134 PF01728 FtsJ: FtsJ-like methy 98.1 1.8E-05 3.8E-10 69.2 8.6 138 159-299 15-180 (181)
135 COG2242 CobL Precorrin-6B meth 98.1 0.00011 2.3E-09 66.3 13.5 136 139-285 7-153 (187)
136 COG2813 RsmC 16S RNA G1207 met 98.0 2.3E-05 4.9E-10 75.3 9.5 110 169-281 161-281 (300)
137 PRK13943 protein-L-isoaspartat 98.0 1E-05 2.2E-10 78.5 7.1 98 158-268 74-180 (322)
138 TIGR00417 speE spermidine synt 98.0 8.5E-06 1.8E-10 76.4 6.4 101 165-268 71-186 (270)
139 PHA03411 putative methyltransf 98.0 9.6E-06 2.1E-10 77.1 6.2 96 167-267 65-182 (279)
140 PRK03612 spermidine synthase; 98.0 2.1E-05 4.6E-10 80.5 9.2 120 166-287 297-439 (521)
141 PRK13256 thiopurine S-methyltr 98.0 2.1E-05 4.6E-10 72.8 8.1 96 168-267 45-162 (226)
142 KOG1271 Methyltransferases [Ge 98.0 1.6E-05 3.4E-10 71.8 6.5 113 169-284 70-197 (227)
143 TIGR00478 tly hemolysin TlyA f 98.0 3.1E-05 6.7E-10 71.7 8.5 106 167-288 76-213 (228)
144 PRK10611 chemotaxis methyltran 98.0 1.1E-05 2.4E-10 77.1 5.5 124 137-269 92-263 (287)
145 PLN02366 spermidine synthase 97.9 1.6E-05 3.5E-10 76.5 6.6 101 165-267 90-205 (308)
146 PF01135 PCMT: Protein-L-isoas 97.9 7.9E-06 1.7E-10 74.6 4.2 96 156-268 64-172 (209)
147 KOG1269 SAM-dependent methyltr 97.9 2.1E-05 4.4E-10 77.5 6.2 95 169-268 113-215 (364)
148 KOG1331 Predicted methyltransf 97.9 6.1E-06 1.3E-10 78.5 2.4 93 167-266 46-141 (293)
149 smart00650 rADc Ribosomal RNA 97.9 2E-05 4.4E-10 68.4 5.3 94 167-269 14-114 (169)
150 PRK13168 rumA 23S rRNA m(5)U19 97.8 4.9E-05 1.1E-09 76.1 8.0 110 167-287 298-419 (443)
151 COG0220 Predicted S-adenosylme 97.8 2.8E-05 6E-10 72.0 5.4 113 168-280 50-178 (227)
152 PHA03412 putative methyltransf 97.8 4.5E-05 9.8E-10 71.2 6.7 96 168-266 51-160 (241)
153 PRK01544 bifunctional N5-gluta 97.8 8.3E-05 1.8E-09 76.1 8.7 114 166-280 347-475 (506)
154 PRK15128 23S rRNA m(5)C1962 me 97.7 0.00015 3.3E-09 72.1 9.2 120 167-289 221-366 (396)
155 PF01596 Methyltransf_3: O-met 97.7 0.00021 4.6E-09 65.1 9.0 128 166-300 45-205 (205)
156 PF05724 TPMT: Thiopurine S-me 97.7 7.6E-05 1.6E-09 68.5 6.1 126 156-288 29-186 (218)
157 PLN02476 O-methyltransferase 97.7 0.00052 1.1E-08 65.4 11.7 126 166-300 118-278 (278)
158 TIGR00479 rumA 23S rRNA (uraci 97.6 0.00025 5.3E-09 70.6 8.9 111 167-287 293-415 (431)
159 COG4122 Predicted O-methyltran 97.6 0.00018 3.8E-09 66.4 7.2 128 166-300 59-218 (219)
160 PLN02672 methionine S-methyltr 97.6 0.00026 5.6E-09 78.1 9.3 116 168-287 120-298 (1082)
161 PF02527 GidB: rRNA small subu 97.6 0.00057 1.2E-08 61.3 9.9 135 144-288 27-171 (184)
162 PRK03522 rumB 23S rRNA methylu 97.5 0.00021 4.5E-09 68.5 6.3 102 168-279 175-286 (315)
163 COG1352 CheR Methylase of chem 97.5 0.00021 4.7E-09 67.7 6.3 104 166-271 96-244 (268)
164 COG2521 Predicted archaeal met 97.5 0.00047 1E-08 64.6 8.1 131 167-300 135-287 (287)
165 PF10294 Methyltransf_16: Puta 97.4 0.00023 4.9E-09 62.7 5.2 100 165-269 44-157 (173)
166 COG2519 GCD14 tRNA(1-methylade 97.4 0.0013 2.9E-08 61.8 10.5 114 159-285 89-213 (256)
167 KOG2899 Predicted methyltransf 97.4 0.00042 9.2E-09 65.1 7.1 48 222-269 159-210 (288)
168 KOG2904 Predicted methyltransf 97.4 0.0015 3.2E-08 62.5 10.6 121 143-268 128-285 (328)
169 COG2518 Pcm Protein-L-isoaspar 97.4 0.00056 1.2E-08 62.7 7.5 99 156-269 64-170 (209)
170 PF05185 PRMT5: PRMT5 arginine 97.3 0.00049 1.1E-08 69.6 7.3 127 136-265 151-294 (448)
171 KOG1499 Protein arginine N-met 97.3 0.00028 6.2E-09 68.9 4.6 97 167-266 61-165 (346)
172 COG4627 Uncharacterized protei 97.3 7.2E-05 1.6E-09 66.0 0.2 45 222-267 40-85 (185)
173 TIGR02085 meth_trns_rumB 23S r 97.2 0.0011 2.3E-08 65.4 7.7 107 168-288 235-352 (374)
174 PF07942 N2227: N2227-like pro 97.2 0.0017 3.7E-08 61.7 8.4 118 167-290 57-240 (270)
175 PF09243 Rsm22: Mitochondrial 97.1 0.0033 7.1E-08 59.5 10.2 120 165-289 32-165 (274)
176 KOG3178 Hydroxyindole-O-methyl 97.1 0.00097 2.1E-08 65.2 6.4 100 166-269 177-276 (342)
177 PRK10909 rsmD 16S rRNA m(2)G96 97.1 0.0015 3.2E-08 59.3 6.8 95 168-270 55-161 (199)
178 PRK04148 hypothetical protein; 97.1 0.001 2.2E-08 57.1 5.3 89 166-267 16-108 (134)
179 PF12147 Methyltransf_20: Puta 97.0 0.0018 3.8E-08 62.3 6.9 127 164-290 133-277 (311)
180 PF11968 DUF3321: Putative met 96.9 0.0019 4.2E-08 59.6 6.2 112 168-290 53-179 (219)
181 PLN02589 caffeoyl-CoA O-methyl 96.8 0.0073 1.6E-07 56.6 9.5 129 166-300 79-246 (247)
182 PRK11933 yebU rRNA (cytosine-C 96.8 0.004 8.7E-08 63.4 8.1 103 166-269 113-243 (470)
183 PLN02823 spermine synthase 96.8 0.0024 5.1E-08 62.4 5.9 98 166-267 103-219 (336)
184 PRK00274 ksgA 16S ribosomal RN 96.8 0.0021 4.6E-08 60.4 5.4 64 167-235 43-112 (272)
185 PRK14896 ksgA 16S ribosomal RN 96.7 0.0034 7.3E-08 58.5 6.1 65 167-238 30-101 (258)
186 COG1189 Predicted rRNA methyla 96.7 0.0084 1.8E-07 56.1 8.5 113 167-288 80-220 (245)
187 PF08704 GCD14: tRNA methyltra 96.5 0.011 2.3E-07 55.6 8.1 116 159-287 35-166 (247)
188 PRK00536 speE spermidine synth 96.4 0.0097 2.1E-07 56.3 7.4 95 163-268 69-171 (262)
189 COG1041 Predicted DNA modifica 96.4 0.01 2.3E-07 58.2 7.3 107 168-278 199-320 (347)
190 PRK11727 23S rRNA mA1618 methy 96.3 0.015 3.2E-07 56.7 7.9 42 164-207 112-155 (321)
191 PF01269 Fibrillarin: Fibrilla 96.0 0.043 9.3E-07 51.1 9.2 93 167-267 74-177 (229)
192 TIGR00755 ksgA dimethyladenosi 96.0 0.016 3.5E-07 53.7 6.5 40 167-209 30-70 (253)
193 PRK11760 putative 23S rRNA C24 96.0 0.1 2.3E-06 51.4 12.0 90 167-267 212-304 (357)
194 COG1092 Predicted SAM-dependen 95.9 0.0084 1.8E-07 59.9 4.5 138 140-283 194-357 (393)
195 PF02475 Met_10: Met-10+ like- 95.9 0.015 3.3E-07 52.9 5.8 109 140-265 83-199 (200)
196 COG5459 Predicted rRNA methyla 95.9 0.011 2.3E-07 58.5 5.0 112 167-280 114-242 (484)
197 PRK04338 N(2),N(2)-dimethylgua 95.9 0.0099 2.1E-07 59.0 4.9 91 168-267 59-157 (382)
198 PTZ00338 dimethyladenosine tra 95.9 0.013 2.9E-07 56.1 5.6 62 167-235 37-108 (294)
199 COG0357 GidB Predicted S-adeno 95.9 0.12 2.6E-06 47.7 11.5 136 143-290 45-193 (215)
200 TIGR03439 methyl_EasF probable 95.7 0.03 6.6E-07 54.4 7.3 97 168-267 78-196 (319)
201 PRK13699 putative methylase; P 95.5 0.033 7.1E-07 51.4 6.4 63 224-286 15-90 (227)
202 COG0293 FtsJ 23S rRNA methylas 95.5 0.026 5.6E-07 51.8 5.6 129 167-299 46-200 (205)
203 PF01170 UPF0020: Putative RNA 95.4 0.012 2.6E-07 52.2 3.0 118 167-288 29-167 (179)
204 KOG3115 Methyltransferase-like 95.2 0.027 5.9E-07 52.0 4.7 23 249-271 164-186 (249)
205 PRK05031 tRNA (uracil-5-)-meth 95.2 0.041 8.9E-07 54.0 6.2 107 168-288 208-339 (362)
206 COG4798 Predicted methyltransf 95.2 0.076 1.7E-06 48.8 7.4 107 161-270 45-168 (238)
207 COG3963 Phospholipid N-methylt 95.0 0.049 1.1E-06 48.9 5.6 105 162-267 44-155 (194)
208 KOG3987 Uncharacterized conser 95.0 0.0076 1.6E-07 55.8 0.4 89 167-267 113-206 (288)
209 KOG1661 Protein-L-isoaspartate 94.9 0.038 8.2E-07 51.2 4.7 89 168-268 84-193 (237)
210 COG2263 Predicted RNA methylas 94.9 0.038 8.3E-07 50.2 4.6 65 168-235 47-115 (198)
211 PF03269 DUF268: Caenorhabditi 94.6 0.023 5.1E-07 50.5 2.6 46 224-269 59-112 (177)
212 PF10672 Methyltrans_SAM: S-ad 94.6 0.025 5.4E-07 54.3 2.9 112 168-282 125-258 (286)
213 PRK00050 16S rRNA m(4)C1402 me 94.6 0.026 5.7E-07 54.3 3.0 52 156-209 11-63 (296)
214 TIGR02987 met_A_Alw26 type II 94.5 0.11 2.5E-06 53.1 7.6 41 167-207 32-80 (524)
215 COG1889 NOP1 Fibrillarin-like 94.4 0.62 1.4E-05 43.1 11.3 109 151-267 60-179 (231)
216 KOG1500 Protein arginine N-met 94.4 0.053 1.1E-06 53.6 4.6 117 166-286 177-307 (517)
217 KOG1663 O-methyltransferase [S 94.2 0.11 2.4E-06 48.5 6.1 96 167-268 74-183 (237)
218 PRK11524 putative methyltransf 94.2 0.17 3.7E-06 47.8 7.5 33 247-279 59-91 (284)
219 TIGR02143 trmA_only tRNA (urac 94.2 0.21 4.6E-06 48.9 8.3 106 169-288 200-330 (353)
220 KOG3191 Predicted N6-DNA-methy 94.1 0.38 8.3E-06 43.8 9.1 121 167-290 44-191 (209)
221 COG0421 SpeE Spermidine syntha 94.1 0.19 4.2E-06 48.1 7.6 118 163-283 73-210 (282)
222 PLN02668 indole-3-acetate carb 93.7 0.11 2.3E-06 52.0 5.3 19 224-242 157-176 (386)
223 TIGR00308 TRM1 tRNA(guanine-26 93.6 0.07 1.5E-06 52.9 3.9 90 169-267 47-146 (374)
224 PF01564 Spermine_synth: Sperm 93.6 0.24 5.2E-06 46.2 7.2 122 166-290 76-218 (246)
225 PF02384 N6_Mtase: N-6 DNA Met 93.2 0.21 4.5E-06 47.3 6.2 108 165-272 45-187 (311)
226 PF06859 Bin3: Bicoid-interact 93.1 0.029 6.3E-07 46.7 0.3 59 228-286 1-70 (110)
227 KOG3201 Uncharacterized conser 93.0 0.11 2.3E-06 46.6 3.7 117 168-288 31-162 (201)
228 KOG2352 Predicted spermine/spe 92.6 0.29 6.2E-06 50.1 6.5 97 169-269 51-162 (482)
229 KOG1709 Guanidinoacetate methy 92.5 0.44 9.5E-06 44.6 7.1 97 165-268 100-206 (271)
230 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.0 0.061 1.3E-06 50.9 0.9 42 227-268 157-199 (256)
231 KOG2798 Putative trehalase [Ca 91.8 0.4 8.7E-06 47.0 6.2 61 227-290 258-335 (369)
232 COG2265 TrmA SAM-dependent met 91.8 0.65 1.4E-05 47.0 8.0 103 166-275 293-403 (432)
233 COG0144 Sun tRNA and rRNA cyto 91.6 0.36 7.8E-06 47.4 5.8 107 163-269 153-289 (355)
234 TIGR00095 RNA methyltransferas 91.2 0.23 5E-06 44.4 3.7 96 168-270 51-161 (189)
235 PF03602 Cons_hypoth95: Conser 91.1 0.13 2.8E-06 46.0 1.9 97 168-270 44-155 (183)
236 PF13578 Methyltransf_24: Meth 90.9 0.061 1.3E-06 42.6 -0.3 94 171-268 1-105 (106)
237 PF13679 Methyltransf_32: Meth 90.8 0.29 6.4E-06 41.3 3.8 22 165-186 24-45 (141)
238 TIGR01444 fkbM_fam methyltrans 89.9 0.3 6.5E-06 40.4 3.0 31 169-199 1-33 (143)
239 PF03492 Methyltransf_7: SAM d 89.4 0.57 1.2E-05 45.7 5.1 19 223-241 101-120 (334)
240 KOG2539 Mitochondrial/chloropl 89.0 0.88 1.9E-05 46.6 6.1 100 166-269 200-316 (491)
241 KOG1122 tRNA and rRNA cytosine 89.0 1.6 3.5E-05 44.2 7.9 104 162-269 237-372 (460)
242 COG3897 Predicted methyltransf 88.5 0.92 2E-05 41.8 5.3 95 166-269 79-180 (218)
243 KOG2793 Putative N2,N2-dimethy 88.4 1.2 2.5E-05 42.1 6.1 96 166-268 86-199 (248)
244 PF08123 DOT1: Histone methyla 88.3 0.71 1.5E-05 42.1 4.5 35 228-267 122-157 (205)
245 PF05958 tRNA_U5-meth_tr: tRNA 88.1 1.9 4.1E-05 42.2 7.7 110 169-288 199-329 (352)
246 PF04816 DUF633: Family of unk 86.2 2.2 4.8E-05 38.9 6.5 114 170-290 1-122 (205)
247 PF01555 N6_N4_Mtase: DNA meth 86.1 0.48 1E-05 41.5 2.0 21 247-267 35-55 (231)
248 PF09445 Methyltransf_15: RNA 85.9 0.32 6.9E-06 43.1 0.9 21 168-188 1-21 (163)
249 PRK11783 rlmL 23S rRNA m(2)G24 85.8 1.6 3.5E-05 46.7 6.2 79 193-271 258-350 (702)
250 COG0742 N6-adenine-specific me 85.5 1.4 3E-05 40.0 4.7 99 167-271 44-157 (187)
251 PF01189 Nol1_Nop2_Fmu: NOL1/N 85.5 0.29 6.2E-06 46.6 0.4 115 164-282 83-237 (283)
252 KOG1596 Fibrillarin and relate 82.8 3 6.4E-05 39.8 5.8 100 159-268 151-261 (317)
253 KOG1099 SAM-dependent methyltr 81.6 0.31 6.7E-06 46.0 -1.1 115 166-283 41-183 (294)
254 COG2520 Predicted methyltransf 79.6 6 0.00013 39.0 7.0 109 167-286 189-314 (341)
255 PF11899 DUF3419: Protein of u 77.2 2.1 4.6E-05 42.7 3.1 44 225-269 291-335 (380)
256 cd08283 FDH_like_1 Glutathione 77.0 8.1 0.00018 37.5 7.1 99 168-268 186-306 (386)
257 cd08254 hydroxyacyl_CoA_DH 6-h 76.5 8.9 0.00019 35.5 7.0 88 168-267 167-262 (338)
258 KOG2915 tRNA(1-methyladenosine 75.4 14 0.0003 35.9 7.9 119 159-289 100-232 (314)
259 COG0030 KsgA Dimethyladenosine 75.3 5.1 0.00011 38.1 5.0 25 167-191 31-55 (259)
260 KOG2198 tRNA cytosine-5-methyl 73.2 17 0.00038 36.3 8.3 126 165-290 154-326 (375)
261 KOG2187 tRNA uracil-5-methyltr 72.8 8.9 0.00019 39.9 6.3 51 159-211 378-430 (534)
262 KOG0820 Ribosomal RNA adenine 72.3 12 0.00026 36.4 6.6 109 167-280 59-191 (315)
263 cd08230 glucose_DH Glucose deh 71.5 17 0.00038 34.6 7.8 89 168-267 174-268 (355)
264 KOG4589 Cell division protein 70.4 13 0.00028 34.4 6.1 128 167-299 70-225 (232)
265 PF00398 RrnaAD: Ribosomal RNA 70.3 4.6 9.9E-05 37.7 3.4 24 166-189 30-53 (262)
266 PF03059 NAS: Nicotianamine sy 69.3 17 0.00038 34.8 7.2 102 167-270 121-232 (276)
267 COG1064 AdhP Zn-dependent alco 67.9 6.3 0.00014 38.9 3.9 88 168-268 168-259 (339)
268 PF05430 Methyltransf_30: S-ad 66.5 13 0.00028 31.3 5.1 70 227-300 49-124 (124)
269 PRK15001 SAM-dependent 23S rib 65.9 11 0.00024 37.6 5.3 103 169-280 47-159 (378)
270 PHA01634 hypothetical protein 64.3 13 0.00028 32.4 4.6 48 144-196 11-59 (156)
271 PF14740 DUF4471: Domain of un 60.7 11 0.00024 36.4 4.1 58 223-288 217-285 (289)
272 PRK01747 mnmC bifunctional tRN 60.1 32 0.00069 36.3 7.7 58 227-288 165-223 (662)
273 COG0863 DNA modification methy 60.1 23 0.00049 32.7 6.0 50 247-300 78-127 (302)
274 cd00315 Cyt_C5_DNA_methylase C 58.8 16 0.00035 34.4 4.8 64 169-235 2-69 (275)
275 PRK09880 L-idonate 5-dehydroge 58.6 23 0.0005 33.6 5.9 89 168-267 171-265 (343)
276 PF00107 ADH_zinc_N: Zinc-bind 58.2 13 0.00029 29.7 3.6 80 176-267 1-88 (130)
277 PRK10742 putative methyltransf 57.8 42 0.00092 31.8 7.3 34 158-191 80-113 (250)
278 TIGR02822 adh_fam_2 zinc-bindi 57.2 54 0.0012 31.1 8.2 85 167-267 166-253 (329)
279 KOG3420 Predicted RNA methylas 56.7 15 0.00032 32.7 3.8 68 168-239 50-125 (185)
280 PF04672 Methyltransf_19: S-ad 56.7 27 0.00059 33.4 5.9 36 232-267 154-189 (267)
281 PF00145 DNA_methylase: C-5 cy 55.5 51 0.0011 30.4 7.5 115 169-289 2-139 (335)
282 COG0287 TyrA Prephenate dehydr 54.8 27 0.00059 33.4 5.6 107 168-284 4-116 (279)
283 PF07757 AdoMet_MTase: Predict 54.0 8.9 0.00019 32.1 1.9 24 166-189 58-81 (112)
284 PF04445 SAM_MT: Putative SAM- 53.9 7.6 0.00017 36.4 1.7 98 140-240 45-163 (234)
285 COG4262 Predicted spermidine s 51.8 29 0.00063 35.2 5.4 102 165-269 288-408 (508)
286 cd08237 ribitol-5-phosphate_DH 51.1 36 0.00077 32.5 5.8 86 168-267 165-255 (341)
287 TIGR01202 bchC 2-desacetyl-2-h 50.2 61 0.0013 30.4 7.2 82 168-267 146-230 (308)
288 COG1063 Tdh Threonine dehydrog 47.2 33 0.00071 33.3 5.0 88 169-267 171-268 (350)
289 PF06962 rRNA_methylase: Putat 47.0 37 0.00079 29.4 4.7 58 227-284 45-114 (140)
290 PF10354 DUF2431: Domain of un 46.8 38 0.00082 29.8 4.9 42 225-268 71-125 (166)
291 KOG1562 Spermidine synthase [A 46.0 40 0.00087 33.1 5.2 110 166-280 121-253 (337)
292 KOG2651 rRNA adenine N-6-methy 44.4 26 0.00057 35.5 3.8 33 165-197 152-185 (476)
293 cd08245 CAD Cinnamyl alcohol d 42.1 56 0.0012 30.3 5.5 89 168-267 164-255 (330)
294 cd08234 threonine_DH_like L-th 41.6 92 0.002 28.8 6.9 89 168-267 161-256 (334)
295 TIGR03366 HpnZ_proposed putati 40.9 91 0.002 28.6 6.7 89 168-267 122-217 (280)
296 COG4076 Predicted RNA methylas 40.6 13 0.00029 34.3 1.0 89 168-265 34-132 (252)
297 COG3414 SgaB Phosphotransferas 40.5 55 0.0012 26.3 4.5 46 222-281 43-92 (93)
298 cd08261 Zn_ADH7 Alcohol dehydr 40.4 73 0.0016 29.7 6.1 89 168-267 161-257 (337)
299 TIGR03451 mycoS_dep_FDH mycoth 40.4 48 0.001 31.7 4.9 89 168-267 178-275 (358)
300 PLN02586 probable cinnamyl alc 39.1 91 0.002 30.0 6.6 90 168-267 185-277 (360)
301 COG0116 Predicted N6-adenine-s 36.7 86 0.0019 31.6 6.1 49 227-276 298-352 (381)
302 TIGR00675 dcm DNA-methyltransf 36.3 3.6E+02 0.0078 25.8 10.2 21 170-190 1-21 (315)
303 cd05188 MDR Medium chain reduc 36.2 90 0.0019 27.4 5.7 91 167-268 135-232 (271)
304 PF12692 Methyltransf_17: S-ad 34.6 17 0.00036 32.3 0.6 102 168-271 30-137 (160)
305 PLN02827 Alcohol dehydrogenase 33.9 68 0.0015 31.2 4.9 89 168-267 195-294 (378)
306 PRK09424 pntA NAD(P) transhydr 32.5 1E+02 0.0022 32.1 6.1 95 167-267 165-284 (509)
307 PF02636 Methyltransf_28: Puta 32.4 32 0.00069 31.7 2.2 20 167-186 19-38 (252)
308 cd08232 idonate-5-DH L-idonate 31.9 1.2E+02 0.0026 28.2 6.0 89 167-267 166-261 (339)
309 COG1565 Uncharacterized conser 30.3 62 0.0013 32.5 3.9 20 167-186 78-97 (370)
310 TIGR00006 S-adenosyl-methyltra 29.9 64 0.0014 31.4 3.9 25 246-270 218-242 (305)
311 PRK09489 rsmC 16S ribosomal RN 28.8 86 0.0019 30.7 4.6 106 168-283 21-128 (342)
312 cd08281 liver_ADH_like1 Zinc-d 28.5 69 0.0015 30.8 3.9 89 168-267 193-289 (371)
313 PF07091 FmrO: Ribosomal RNA m 26.2 68 0.0015 30.5 3.2 115 166-289 105-241 (251)
314 PF05206 TRM13: Methyltransfer 25.9 57 0.0012 30.9 2.7 20 167-186 19-38 (259)
315 cd05278 FDH_like Formaldehyde 25.6 1.9E+02 0.004 26.9 6.1 88 168-267 169-266 (347)
316 TIGR00006 S-adenosyl-methyltra 25.1 1.4E+02 0.003 29.1 5.2 51 156-209 12-63 (305)
317 COG0373 HemA Glutamyl-tRNA red 24.7 1.3E+02 0.0029 30.6 5.2 88 166-256 177-267 (414)
318 PRK07066 3-hydroxybutyryl-CoA 24.6 1.6E+02 0.0035 28.7 5.6 111 166-282 6-130 (321)
319 PRK00050 16S rRNA m(4)C1402 me 24.6 82 0.0018 30.5 3.5 26 246-271 214-239 (296)
320 COG4301 Uncharacterized conser 24.3 1.8E+02 0.0039 28.2 5.6 99 167-267 79-192 (321)
321 cd08239 THR_DH_like L-threonin 24.2 1.3E+02 0.0028 28.1 4.8 89 168-267 165-261 (339)
322 PF01795 Methyltransf_5: MraW 24.1 84 0.0018 30.7 3.5 30 246-275 219-248 (310)
323 PRK07417 arogenate dehydrogena 23.2 2.9E+02 0.0062 25.7 6.9 80 170-262 3-85 (279)
324 COG2813 RsmC 16S RNA G1207 met 23.2 1.5E+02 0.0033 28.9 5.1 57 226-287 35-93 (300)
325 COG0275 Predicted S-adenosylme 23.0 1E+02 0.0022 30.3 3.8 26 246-271 222-247 (314)
326 PF02558 ApbA: Ketopantoate re 22.9 2E+02 0.0044 23.6 5.3 100 171-280 2-114 (151)
327 PRK07502 cyclohexadienyl dehyd 22.7 2.6E+02 0.0057 26.3 6.6 101 167-278 6-112 (307)
328 PF01795 Methyltransf_5: MraW 22.6 1.6E+02 0.0035 28.8 5.1 77 167-265 21-99 (310)
329 TIGR00027 mthyl_TIGR00027 meth 22.6 1.5E+02 0.0032 27.8 4.8 98 167-267 82-196 (260)
330 cd08298 CAD2 Cinnamyl alcohol 21.9 4.6E+02 0.0099 24.1 8.0 85 168-268 169-256 (329)
331 PRK06274 indolepyruvate oxidor 21.5 1.2E+02 0.0027 26.6 3.9 37 222-269 59-97 (197)
332 cd08255 2-desacetyl-2-hydroxye 21.3 2.7E+02 0.0059 24.9 6.2 86 168-267 99-189 (277)
333 PF04989 CmcI: Cephalosporin h 21.3 2.4E+02 0.0052 26.0 5.7 25 246-270 125-149 (206)
334 COG1893 ApbA Ketopantoate redu 21.2 3.8E+02 0.0082 25.8 7.4 106 169-283 2-117 (307)
335 COG2384 Predicted SAM-dependen 20.9 7.1E+02 0.015 23.4 10.5 126 169-300 19-159 (226)
336 COG0275 Predicted S-adenosylme 20.5 2.2E+02 0.0048 28.0 5.6 52 156-209 15-67 (314)
337 PLN02178 cinnamyl-alcohol dehy 20.4 2.2E+02 0.0047 27.7 5.7 90 168-267 180-272 (375)
338 PF07101 DUF1363: Protein of u 20.3 37 0.00081 28.0 0.2 17 170-186 6-23 (124)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.5e-85 Score=646.00 Aligned_cols=278 Identities=48% Similarity=0.933 Sum_probs=261.7
Q ss_pred cceeeeeecccCCCc---------------hhhHHHHHHHHHHHHhcchhhhhhhcCCCceeEEEEEcCCCCchhccccC
Q 021643 16 NLSYGLECCNLSSFN---------------VHIRFSLAAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREE 80 (309)
Q Consensus 16 ~~~~~~~~~~~~~~~---------------~~~~~~w~~~~~l~~~~Cw~~~~~~~~~~~~~~~iw~Kp~~~~C~~~r~~ 80 (309)
.++||+|+||+|||+ .+..++|++|++||++|||++|++++| +||||||.+|+||.+|+.
T Consensus 198 ~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~-----~aIwqKp~~~~Cy~~r~~ 272 (506)
T PF03141_consen 198 DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD-----TAIWQKPTNNSCYQKRKP 272 (506)
T ss_pred ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC-----EEEEeccCCchhhhhccC
Confidence 589999999999993 246789999999999999999999998 999999999999999986
Q ss_pred -CCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CchhhhcccchhHHHHHHH
Q 021643 81 -NTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPP-----DSEEAFNKDTTHWYALVSD 154 (309)
Q Consensus 81 -~~p~~C~~~~~~~~~wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl~~~p~~l~~-----~~~e~F~~d~~~W~~~v~~ 154 (309)
..||+|++++|||++||+||++||+|+|+......++++.+||+||+++|+||+. .+.|.|.+|+++|+++|.+
T Consensus 273 ~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~ 352 (506)
T PF03141_consen 273 GKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSH 352 (506)
T ss_pred CCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999888999999999999999999975555567899999999999999987 5889999999999999997
Q ss_pred HHHhc--cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCCCCccee
Q 021643 155 VYVGG--LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLL 232 (309)
Q Consensus 155 ~y~~~--l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP~sFDlV 232 (309)
|... +.+.++++||||||++|+|||||+|.+++||||||+|+..+++|+++++|||+|+||||||++++||||||||
T Consensus 353 -Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 353 -YKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred -HHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhhe
Confidence 5543 4588899999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee--------cceEEEEEe
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY--------HDQFLVGKK 299 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~--------~e~~li~~K 299 (309)
|++++|+++.++|+++++|.||||||||||++||+|..+++++|++|+++|||++.+. +|++|||||
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999887 699999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.1e-41 Score=338.09 Aligned_cols=212 Identities=22% Similarity=0.361 Sum_probs=182.1
Q ss_pred CCchhccccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCC------CCCCCCCCC-------C-
Q 021643 71 SYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL------SSKPPSLPP-------D- 136 (309)
Q Consensus 71 ~~~C~~~r~~~~p~~C~~~~~~~~~wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl------~~~p~~l~~-------~- 136 (309)
+.+-+++||++ |+..++ ...|++|+|.+| + .|++||+|+ |+|++.|+. +
T Consensus 17 ~~~~~~~rERh----CP~~~~--------~~~CLVp~P~gY---k--~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~ 79 (506)
T PF03141_consen 17 SRERMEHRERH----CPPPEE--------RLRCLVPPPKGY---K--TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVR 79 (506)
T ss_pred CcccccEeecc----CcCCCC--------CCccccCCCccC---C--CCCCCCcccceeeecccCchHHhhhccccccee
Confidence 45567788888 988654 899999999954 6 799999999 889998876 1
Q ss_pred ---chhhhcccchhHHHHHHHHHHhccC----C--CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH
Q 021643 137 ---SEEAFNKDTTHWYALVSDVYVGGLA----I--NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII 206 (309)
Q Consensus 137 ---~~e~F~~d~~~W~~~v~~~y~~~l~----i--~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a 206 (309)
..-.|++.+..|.+.+.+ |+++++ + ..+.+|++||+|||+|+||++|.+++|.+|+++|.|.+ .++++|
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred ecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhh
Confidence 122799999999999986 887553 3 45789999999999999999999999999999999998 689999
Q ss_pred HhcCcchhhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC----------HHHHHH
Q 021643 207 FDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINK 275 (309)
Q Consensus 207 ~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~ 275 (309)
.|||+...+.-....+|||| ++||+|||+.|+..|....++ +|.|+||||||||||+++.. .+.+++
T Consensus 159 leRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~ 236 (506)
T PF03141_consen 159 LERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNA 236 (506)
T ss_pred hhcCcchhhhhhccccccCCccchhhhhcccccccchhcccc--eeehhhhhhccCceEEecCCcccccchHHHHHHHHH
Confidence 99998544433334689999 999999999999999876666 99999999999999999743 468999
Q ss_pred HHHHHHcCCCeeeeecceEEEEEeCcC
Q 021643 276 LKPVLHSLQWSTNIYHDQFLVGKKGFW 302 (309)
Q Consensus 276 i~~l~~~l~W~~~~~~e~~li~~K~~w 302 (309)
|++++++|||+...++++++||||+.-
T Consensus 237 ~~~l~~~lCW~~va~~~~~aIwqKp~~ 263 (506)
T PF03141_consen 237 MEDLAKSLCWKKVAEKGDTAIWQKPTN 263 (506)
T ss_pred HHHHHHHHHHHHheeeCCEEEEeccCC
Confidence 999999999999999999999999864
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=4.8e-17 Score=150.63 Aligned_cols=115 Identities=29% Similarity=0.389 Sum_probs=91.4
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h------h
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G------M 214 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g------~ 214 (309)
+.++.|++.... .+++. +..+|||+|||||-+|..+++... ...|+.+|.+ +||..+.+|-.- + +
T Consensus 34 g~~~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv 106 (238)
T COG2226 34 GLHRLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106 (238)
T ss_pred cchHHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEE
Confidence 566888886654 33333 346899999999999999998532 3468889998 799999998542 1 2
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..| +| .|||| +|||+|.+++.|+++. +++.+|.||+|||||||.+++.|.
T Consensus 107 ~~d-Ae-~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 107 VGD-AE-NLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred Eec-hh-hCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 333 33 69999 9999999999999887 488999999999999999999874
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=1.8e-16 Score=146.11 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=73.2
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc------ch-h
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IG-M 214 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl------ig-~ 214 (309)
+-++.|++.+.+ .. ... +..+|||+|||||.++..|+++-.....|+++|.+ +||..+.+|.. +. +
T Consensus 30 g~~~~wr~~~~~-~~---~~~--~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v 103 (233)
T PF01209_consen 30 GQDRRWRRKLIK-LL---GLR--PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFV 103 (233)
T ss_dssp -------SHHHH-HH---T----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEE
T ss_pred cHHHHHHHHHHh-cc---CCC--CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE
Confidence 567889987765 32 222 23589999999999999998752222367888998 79999987632 11 1
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..| ++ .+||| ++||.|.|++.++++++ ..++|.||+|||||||.++|.|.
T Consensus 104 ~~d-a~-~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 104 QGD-AE-DLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp E-B-TT-B--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcC-HH-HhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeec
Confidence 222 22 69999 99999999999997764 78899999999999999999874
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=3.1e-16 Score=120.09 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=68.1
Q ss_pred EEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcch----hhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 171 MDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG----MYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 171 LD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig----~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
||+|||+|.++..|++++. .++.++|.+ .+++.+.++.... ...+. ..+||| ++||+|++..+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~--~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDA--EDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBT--TSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehH--HhCccccccccccccccceeecc--
Confidence 8999999999999999822 356777777 5788888775421 22232 357999 9999999999999983
Q ss_pred CCHHHHHHHHhhcccCCeEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii 266 (309)
+..+++.|+.|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 478999999999999999986
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=1.1e-14 Score=135.64 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc---------ch-hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---------IG-MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl---------ig-~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..|+++ +.. ..|+++|.+ +|++.|.+|.. +. ...| + ..+||+ ++||+|+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d-~-~~lp~~~~sfD~V~ 150 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD-A-TDLPFDDCYFDAIT 150 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcc-c-ccCCCCCCCEeEEE
Confidence 458999999999999888864 211 257788888 69998876531 11 1122 2 258999 9999999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++.+++|++ ++..+|.|+.|+|||||++++.|-
T Consensus 151 ~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 151 MGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999886 478899999999999999999874
No 7
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.44 E-value=9.5e-14 Score=116.54 Aligned_cols=94 Identities=23% Similarity=0.474 Sum_probs=72.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
...+|||+|||+|.++..|++.+. .++++|.+ .+++. +.......+ ....+++ ++||+|+|+.+|+|+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence 356899999999999999988876 56677776 45554 222111111 1234556 99999999999999984
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+..+|.++.|+|||||++++.+..
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 788999999999999999999865
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.42 E-value=5.6e-13 Score=121.92 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=78.6
Q ss_pred cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccC
Q 021643 144 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF 222 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~ 222 (309)
.+..|++.+.. .+.... . ...+|||+|||||.++..|++.. ...|+++|.+ +|++.+.++.-. ...+ ++ .
T Consensus 33 ~~~~wr~~~~~-~l~~~~-~--~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~~-~~~d-~~-~ 103 (226)
T PRK05785 33 QDVRWRAELVK-TILKYC-G--RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADDK-VVGS-FE-A 103 (226)
T ss_pred CcHHHHHHHHH-HHHHhc-C--CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccce-EEec-hh-h
Confidence 34678776654 322211 1 13589999999999999998863 1367888988 799999887421 1222 22 5
Q ss_pred CCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCe
Q 021643 223 NTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG 262 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG 262 (309)
+||+ ++||+|+++++++|+. +++.+|.||+|||||.+
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence 8999 9999999999998765 47889999999999954
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.42 E-value=5.3e-13 Score=128.91 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcch----hhhhccccCCCCC-CCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLIG----MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rglig----~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
...+|||+|||+|.++..|+++ +. .|+++|.+ .+++.+.+ +|+.. ...|. ..+||+ ++||+|++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~--~~~~~~~~~FD~V~s 192 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA--LNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc--ccCCCCCCCccEEEE
Confidence 3468999999999999999885 33 45666666 46655544 34411 12232 247899 99999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
..+++|+.+ ...+|.|+.|+|||||.++|.+
T Consensus 193 ~~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 999999874 6789999999999999999975
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=1.2e-12 Score=120.08 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h-hhhhccccCCCCC-CCcceeEeccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
...+|||+|||+|.++..|.+.+. .+..+|.+ .+++.+.++... . ...|. + .+||+ ++||+|+++.++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~-~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-E-SLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-c-cCcCCCCcEEEEEECchhhhc
Confidence 356899999999999999987653 46677877 688888887531 1 12232 2 47888 899999999888765
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ++..+|.|+.|+|||||.++++.
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 4 47889999999999999999985
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=5.7e-13 Score=122.85 Aligned_cols=96 Identities=23% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
...+|||+|||+|.++..|+++.. ...|+++|.+ .|++.+.++++.-...|. + .++ + ++||+|+|+.+|+|+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~-~~~-~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDV-R-DWK-PKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcCh-h-hCC-CCCCceEEEEehhhhhCCC
Confidence 346899999999999999987621 1256777887 699999888753223332 2 233 5 89999999999998864
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...++.++.|+|||||++++..
T Consensus 105 ---~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 105 ---HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ---HHHHHHHHHHhCCCCcEEEEEc
Confidence 6789999999999999999863
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=1.2e-12 Score=122.01 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=81.6
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcCCC-----EEEEecccCCc-ccHHHHHhcC----cc------hhhhhccccCCCCC-
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQPL-----WVMNVVPIDAP-DTLSIIFDRG----LI------GMYHDWCESFNTYP- 226 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~~v-----~v~~V~p~d~s-~~l~~a~eRg----li------g~~~d~ce~~lpfP- 226 (309)
++..-++|||+||||-.|-.+.+.-- ...+|+-.|.+ +||..+.+|. +- -+.+| + +.||||
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d-A-E~LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD-A-EDLPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC-c-ccCCCCC
Confidence 33447899999999998877765311 11345556665 6888777665 31 11122 2 379999
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHH-HHHHHHHHc
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVLHS 282 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~~~ 282 (309)
++||+...++.+..+.| ++++|.|++|||||||+|.+-+...+- +-++.+.+.
T Consensus 176 ~s~D~yTiafGIRN~th---~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH---IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred CcceeEEEecceecCCC---HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 99999999999987765 789999999999999999998876543 455555443
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=1.2e-12 Score=116.87 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=89.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++++. +|.++|.+ .+++.+.+ +++. ....|.. ..+++++||+|+|+.++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN--NLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh--hCCcCCCcCEEEEecch
Confidence 35899999999999999999864 56667777 56665543 3331 1223321 24556789999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------H---HHHHHHHHHHcCCCeeeeecceEEEEEeCcCCC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------E---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 304 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------~---~~~~i~~l~~~l~W~~~~~~e~~li~~K~~w~~ 304 (309)
+|+. ..+...++.++.|+|||||++++.+.. . ..+++.+... .|+.....+.+....|+.|..
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~~~~~g 182 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHRTDANG 182 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcccccCC
Confidence 8765 345788999999999999996553211 0 1234445444 587766666677777766654
Q ss_pred CC
Q 021643 305 TG 306 (309)
Q Consensus 305 ~~ 306 (309)
+.
T Consensus 183 ~~ 184 (197)
T PRK11207 183 NR 184 (197)
T ss_pred CE
Confidence 43
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=6.1e-13 Score=128.25 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c---chhhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l---ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..|+..+. .|.++|.+ ++++.|.++. + +...+.-++ .++++ ++||+|+|..++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHH
Confidence 5899999999999999988764 56777887 6888887652 1 111111112 46777 899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+.+ ...+|.|+.|+|||||.+++.+.
T Consensus 209 eHv~d---~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVAN---PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence 99875 67899999999999999999864
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.35 E-value=1.3e-12 Score=121.93 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----ch-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IG-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|+... ...++.+|.+ +++..+.++.. +. ...|. . ..||| ++||+|++..++.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~-~-~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI-L-KKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc-c-cCCCCCCCeEEEEEhhhHH
Confidence 4689999999999999887642 1256777777 68888877632 11 12222 1 46898 9999999998888
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+.. .+...+|.++.|+|||||++++.|.
T Consensus 129 h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8752 3478899999999999999999874
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.34 E-value=4.1e-12 Score=114.57 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhh-hhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.-.-...++.+|.+ ++++.+.++ ++ +... .| .+ .++++ ++||+|+++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~-~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN-AM-ELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec-hh-cCCCCCCCccEEEEecc
Confidence 3589999999999999998641011245666776 577666654 22 1111 22 12 46788 99999999998
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|..+ ...+|.|+.|+|||||++++.+.
T Consensus 124 l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 887753 67899999999999999998764
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.33 E-value=2.1e-12 Score=103.10 Aligned_cols=98 Identities=26% Similarity=0.344 Sum_probs=69.4
Q ss_pred CeEEEeCCcchHHHHHhhc--CCCEEEEecccCCc-ccHHHHHhcC----c---ch-hhhhccccCCCCCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDRG----L---IG-MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~--~~v~v~~V~p~d~s-~~l~~a~eRg----l---ig-~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
.+|||+|||+|.++.+|++ .+. .++++|.+ .+++.+.++- . +. ...|+ .....++..||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 5899999999999999998 554 35666776 5777776654 2 11 11222 11244457799999998
Q ss_pred -ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 -LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 -v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.++++.+..+..++|.++.+.|||||+++|+++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 455443334567899999999999999999863
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=3.5e-12 Score=117.71 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=72.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch---hh-hhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG---MY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig---~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++.+. .|+.+|.+ ++++.|.++ |+.. .. .+. +...+++ ++||+|+|+.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~-~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA-QDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-HHHhhhcCCCCCEEEehh
Confidence 46899999999999999999864 56677887 688777654 3311 11 121 1123566 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|+.+ ...+|.++.|+|||||++++..
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9998864 5789999999999999998763
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.30 E-value=1e-11 Score=110.76 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=86.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--hhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++.+|++++. .|.++|.+ .+++.+.+ .|+. ....|. ...+++++||+|+++.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~--~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI--NAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc--hhccccCCCCEEEEecccc
Confidence 35899999999999999998763 56677776 56665543 3431 111221 1245567899999999998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HH---HHHHHHHHHHcCCCeeeeecceEEEEEeCcCC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LE---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWR 303 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~---~~~~i~~l~~~l~W~~~~~~e~~li~~K~~w~ 303 (309)
|++. .+...++.++.|+|||||++++.+. .. ..+++.++... |+.....|.+.-+.|+-|.
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~e~~~~~~~~~~~ 180 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYNEAVGELHATDAN 180 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEeecccccccccccC
Confidence 8753 3577899999999999999655421 11 13445555543 8777766666555665543
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=7.2e-12 Score=125.16 Aligned_cols=96 Identities=24% Similarity=0.388 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--c---ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--L---IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--l---ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..|++.. ...++++|.+ .++..|.++. . +. ...|.. ..++| ++||+|+|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT--KKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc--cCCCCCCCEEEEEECCc
Confidence 34689999999999999888752 1256777887 6888876652 2 11 123322 36788 89999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.|+.+ .+.+|.|+.|+|||||.+++.|
T Consensus 342 l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 342 ILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 999874 6789999999999999999986
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=5.2e-11 Score=106.54 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--chhhhhc
Q 021643 146 THWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDW 218 (309)
Q Consensus 146 ~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig~~~d~ 218 (309)
..|.+.+.+.-.-.-.++. ..+|||+|||+|.++..++...- ...|+.+|.+ .+++.+.+ .|+ +......
T Consensus 27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d 103 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 4777766431110011222 46899999999999888875211 1256677776 56655543 343 1112211
Q ss_pred cccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 219 CESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 219 ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
.+. ++..++||+|+|+.. .+++.++.++.|+|||||++++.+......++..++..+.|+...
T Consensus 104 ~~~-~~~~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 104 AEE-FGQEEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEE 166 (187)
T ss_pred Hhh-CCCCCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEee
Confidence 221 222579999998742 246789999999999999999999888899999999999998644
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.26 E-value=1.1e-11 Score=116.85 Aligned_cols=106 Identities=20% Similarity=0.348 Sum_probs=68.6
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHH----HHhcCcchhhhhccccCCCCCCCc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSI----IFDRGLIGMYHDWCESFNTYPRTY 229 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~----a~eRglig~~~d~ce~~lpfP~sF 229 (309)
+++.+++.+| .+|||+|||.|+++.+++++ ++.| +++..| ++.+. +.++|+.....-.+.....++.+|
T Consensus 54 ~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v---~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 54 LCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCHV---TGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EE---EEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcEE---EEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 5667777765 59999999999999999987 7654 444445 44444 455676321111111123445699
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|.|++..+|+|+.. .+...++..++|+|||||.+++.
T Consensus 129 D~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999963 45788999999999999999875
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.26 E-value=2.3e-11 Score=116.99 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=66.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH---Hhc-C---cchhh-hhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII---FDR-G---LIGMY-HDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a---~eR-g---lig~~-~d~ce~~lpfP~sFDlVh~~~v 237 (309)
.++|||+|||+|.++..++..+.. .|+++|.+ .++..+ ... + .+... .+ . ..+|++.+||+|+|..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~-i-e~lp~~~~FD~V~s~gv 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLG-I-EQLHELYAFDTVFSMGV 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECC-H-HHCCCCCCcCEEEEcch
Confidence 368999999999999888876542 35566666 354321 111 1 11101 11 1 13565578999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|.. ++.++|.|++|+|||||.+++.+
T Consensus 198 L~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 LYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 99876 46889999999999999999863
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.25 E-value=8.3e-12 Score=115.54 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=77.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
-.+|||+|||-|.++..|+..|. +|+++|.+ .+++.|..+.+ ...|....-..+-.. ++||+|.|..+++|
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 35799999999999999999984 67888998 68888875543 211211111235555 89999999999999
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+++ ++.++++..+.+||||.+++++-.
T Consensus 137 v~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 986 677999999999999999999754
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.25 E-value=2.2e-11 Score=111.90 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCCCCcceeEecccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
+..+|||+|||+|.++..|++... ...+.++|.+ .+++.+.++.- +. ...|. + .++.+++||+|+++.+|+|+.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~-~-~~~~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADI-A-SWQPPQALDLIFANASLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECch-h-ccCCCCCccEEEEccChhhCC
Confidence 346899999999999999987521 1256777777 68888877632 11 11221 1 122238999999999998876
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+ ...+|.++.|+|||||.+++..
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEEC
Confidence 4 6789999999999999999963
No 26
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.23 E-value=1.4e-12 Score=102.82 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=51.7
Q ss_pred EEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----c--hhhh-hccccCCCCC-CCcceeEeccccccc
Q 021643 171 MDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I--GMYH-DWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 171 LD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----i--g~~~-d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
||+|||+|.++..|.++. ....++.+|.+ .+++.+++|-- . .... +-.+...+.+ ++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998763 23456777777 56654444421 0 0000 0001122333 699999999999999
Q ss_pred cccCCHHHHHHHHhhcccCCeEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYV 264 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~l 264 (309)
. ++..+|..+.++|||||.|
T Consensus 80 ~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----HHHHHHHHTTT-TSS-EE
T ss_pred h---hHHHHHHHHHHHcCCCCCC
Confidence 3 5889999999999999986
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.23 E-value=3.2e-11 Score=107.55 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc---chhhhhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..|++.... ..+..+|.+ .++..+.++.. .....|. + ..+++ ++||+|+++.+++|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~-~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDA-E-KLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecch-h-hCCCCCCceeEEEEhhhhhhc
Confidence 368999999999999999886421 235666766 57777766532 1122232 2 46778 999999999999887
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. +...+|.++.|+|||||++++.+
T Consensus 112 ~---~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 D---DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred c---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 5 36789999999999999999975
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.23 E-value=2.4e-11 Score=116.98 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHH--HHhcCc-----ch-hhhhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSI--IFDRGL-----IG-MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~--a~eRgl-----ig-~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
.++|||+|||+|.++..++..+.. .|+++|.+ .++.. +..+.. +. ...+. ..+|++++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~--e~lp~~~~FD~V~s~~v 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI--EQLPALKAFDTVFSMGV 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH--HHCCCcCCcCEEEECCh
Confidence 368999999999999999886532 25566666 34432 111111 11 11121 14677889999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|.. ++..+|.++.|+|||||.+++.+
T Consensus 199 l~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 199 LYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99875 47789999999999999999863
No 29
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.23 E-value=1.3e-11 Score=110.79 Aligned_cols=95 Identities=23% Similarity=0.431 Sum_probs=69.2
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCCCCcceeEeccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
+|||+|||+|+++..+++..- ..++.++|.+ +++..+.++ |+.. ...|.. ..|++++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~--~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA--KDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc--cCCCCCCCCEeehHHHHH
Confidence 699999999999999887421 0235556666 566666553 3321 112321 246678999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+.+ ...++.++.|+|||||++++.+.
T Consensus 79 ~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIKD---KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCCC---HHHHHHHHHHHcCCCCEEEEEEc
Confidence 8864 67899999999999999999864
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.22 E-value=2.8e-11 Score=107.52 Aligned_cols=97 Identities=30% Similarity=0.389 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc--Cc---ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--GL---IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR--gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++...-...+..+|.+ .+++.+.++ +. +. ...|. ...+++ ++||+|++..++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccCCCCCCCceEEEEechh
Confidence 4689999999999999988742111256677776 577777776 11 11 11221 136788 999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+|+.+ ...++.++.|+|||||++++.+
T Consensus 98 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 98864 6789999999999999999875
No 31
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=1.3e-11 Score=113.85 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=71.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhcC----cchhhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRg----lig~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|+.. +. ..++++|.+ +|++.+.++- +.....-.+.....+| ..||+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 358999999999998888752 21 256778887 6888887652 2110000011122344 56999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+.+ .+...++.++.|+|||||.+++.|.
T Consensus 135 l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 998864 3467899999999999999999873
No 32
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.22 E-value=2.1e-11 Score=114.13 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=87.2
Q ss_pred chhhhcccchhHHHHHHHHHHhcc-C-CCCCCCCeEEEeCCcchH----HHHHhhcCC----CEEEEecccCCc-ccHHH
Q 021643 137 SEEAFNKDTTHWYALVSDVYVGGL-A-INWSSVRNVMDMNASYGG----FAAALIDQP----LWVMNVVPIDAP-DTLSI 205 (309)
Q Consensus 137 ~~e~F~~d~~~W~~~v~~~y~~~l-~-i~~~~~r~VLD~GCG~G~----faa~L~~~~----v~v~~V~p~d~s-~~l~~ 205 (309)
....|-.+...|...... .+..+ . ...++..+|+|+|||+|. +|..|++.. .+...|.++|.+ .+++.
T Consensus 69 ~~T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 69 NETRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred CCCcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 334677777788775542 22211 1 112334689999999995 565665531 123578899998 68988
Q ss_pred HHhcCc----------------------------------chhhhhccccCCCCC-CCcceeEeccccccccccCCHHHH
Q 021643 206 IFDRGL----------------------------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADV 250 (309)
Q Consensus 206 a~eRgl----------------------------------ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~ 250 (309)
|.+.-. .-..+|.. ..++| ++||+|+|..+|+|+.+ .+...+
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~--~~~~~~~~fD~I~crnvl~yf~~-~~~~~~ 224 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL--AESPPLGDFDLIFCRNVLIYFDE-PTQRKL 224 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC--CCCCccCCCCEEEechhHHhCCH-HHHHHH
Confidence 875310 00123322 35667 99999999999999863 346789
Q ss_pred HHHHhhcccCCeEEEEEeCH
Q 021643 251 AVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 251 L~Em~RVLRPGG~lii~D~~ 270 (309)
+.+++|+|||||++++....
T Consensus 225 l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 225 LNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHHhCCCeEEEEECcc
Confidence 99999999999999997543
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.22 E-value=1.5e-11 Score=104.51 Aligned_cols=98 Identities=19% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC--CCCCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT--YPRTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp--fP~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++ .+. ...+.++|.+ ++++.|.++ ++. . ...|. + .++ |++.||+|+++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~-~-~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI-E-DLPQELEEKFDIIISN 80 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT-T-CGCGCSSTTEEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeeh-h-ccccccCCCeeEEEEc
Confidence 46899999999999999994 211 1246777877 688877763 441 1 11222 1 144 56899999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.+++|+.+ ...+|.++.|.|+|||.+++.+..
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99987764 577999999999999999999865
No 34
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.21 E-value=1.7e-11 Score=111.95 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCCCCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+++. .-...++++|.+ +|+..+.++ +. +. ...|.. .+++ ..||+|+++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~--~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR--HVEI-KNASMVILNF 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh--hCCC-CCCCEEeeec
Confidence 4589999999999998887641 011356777877 688887665 11 11 122221 1333 5699999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++|+++ .+...+|.+++|+|||||.++++|.
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9998864 3467899999999999999999974
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.21 E-value=2.6e-11 Score=112.54 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|..+..++.. +.. ..|..+|.+ .+++.+.++ |+. . ...+. ..+|++ ++||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~--~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI--EALPVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch--hhCCCCCCceeEEEEcC
Confidence 459999999999876655542 211 145667776 578777764 221 0 11222 247888 8999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|.++ ...++.|+.|+|||||++++.|
T Consensus 155 v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9987653 6789999999999999999975
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.19 E-value=3.3e-11 Score=120.40 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-c---c-hhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L---I-GMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-l---i-g~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|++... .|+++|.+ .+++.+.++. . + ....|.....+|+| ++||+|+|+.+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 35899999999999999998643 45677777 5777665432 1 1 11122211246888 9999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+.+ .++..+|.+++|+|||||++++.|.
T Consensus 115 ~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9875 3467899999999999999999863
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.17 E-value=7.9e-11 Score=114.48 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=82.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc---ch-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---IG-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++. +. ..++.+|.+ ++++.+.++.- +. ...|. ..+||+ ++||+|+++.+++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~--e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA--EDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccH--HhCCCCCCceeEEEEcChhh
Confidence 358999999999998888763 21 256677777 68888877531 11 11222 247898 9999999999998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeCHH-----------------HHHHHHHHHHcCCCee
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-----------------MINKLKPVLHSLQWST 287 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-----------------~~~~i~~l~~~l~W~~ 287 (309)
|+.+ ...+|.|+.|+|||||.+++.+... ..+++.+++++..++.
T Consensus 190 ~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 190 YWPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred hCCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 8764 5679999999999999998865310 1355666777767764
No 38
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.16 E-value=5.2e-11 Score=111.18 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=66.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCC--CEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~--v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.. .....+.++|.+ +++..|.++.. +. ...|. ..+||+ ++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~--~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS--HRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec--ccCCCcCCceeEEEEecC---
Confidence 4679999999999999987642 111257788888 68998887753 11 12221 258999 99999997532
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+ ..+.|+.|+|||||++++...
T Consensus 161 -~------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -P------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -C------CCHHHHHhhccCCCEEEEEeC
Confidence 1 147899999999999999864
No 39
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.14 E-value=6.8e-11 Score=106.84 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCC--CCC-CCcceeEeccc
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN--TYP-RTYDLLHSSFL 237 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~l--pfP-~sFDlVh~~~v 237 (309)
+...+++++||+|||.|.|+..|+.+- -.++.+|.+ ..++.+++|---.....|-...+ .+| ++||+|+++.+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 566789999999999999999999862 457777887 58899988743111112222222 357 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+.++.+..++..++..+.+.|+|||.+|+-...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999976667889999999999999999997543
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=8.7e-11 Score=110.71 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=78.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH----hcCcc--hhhhhccccCCCCCCCcceeEecccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGLI--GMYHDWCESFNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~----eRgli--g~~~d~ce~~lpfP~sFDlVh~~~v~~~ 240 (309)
.+|||+|||+|.++.+|++++. .|+++|.+ .+++.+. +.++. ....|.- ..+++++||+|+++.+|+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~--~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDIN--SASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechh--cccccCCccEEEEcchhhh
Confidence 4899999999999999998764 56677777 5666544 33441 1112211 1234589999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC---H-----------HHHHHHHHHHHcCCCeeeee
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT---L-----------EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~-----------~~~~~i~~l~~~l~W~~~~~ 290 (309)
+. ..++..++.+|.|+|||||++++... . ---++++.+.+. |+....
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 75 34578899999999999999665321 0 113456666655 876654
No 41
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.13 E-value=5.3e-10 Score=97.82 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=80.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..++..+. .+..+|.+ .+++.+.++ ++. . ...|+ ...+ ++||+|+++-.++
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~----~~~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDL----FKGVRGKFDVILFNPPYL 93 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc----ccccCCcccEEEECCCCC
Confidence 5799999999999999998764 46667776 566665543 221 1 11222 2233 8999999997776
Q ss_pred cccccC------------------CHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCeeeee
Q 021643 240 DVTQRC------------------DIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 240 ~~~~~~------------------~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~~~ 290 (309)
+..+.. -++++|.++.|+|||||.+++.+.... ..++.++++...++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 553210 156789999999999999999876554 667777777777776554
No 42
>PRK06202 hypothetical protein; Provisional
Probab=99.12 E-value=1.1e-10 Score=105.99 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCcchHHHHHhhc----CCCEEEEecccCCc-ccHHHHHhcCcc-h---hhhhccccCCCCC-CCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSIIFDRGLI-G---MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~----~~v~v~~V~p~d~s-~~l~~a~eRgli-g---~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
.+..+|||+|||+|.++..|++ .+. ...++++|.+ ++++.+.++... + ...+ + ..++++ ++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~-~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAV-S-DELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEe-c-ccccccCCCccEEEE
Confidence 3456899999999999888864 222 2367888988 799988876321 1 1111 1 245667 89999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.+|+|+.+. ++..+|.||.|++| |.+++.|
T Consensus 136 ~~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 9999999753 46789999999999 5666665
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.11 E-value=1.2e-10 Score=105.23 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc-chhh-hhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL-IGMY-HDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~-~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..|.+. +. ..+.++|.+ ++++.|.++.. +... .+ ...||+ ++||+|+++.+++|+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d---~~~~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGS---LFDPFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEee---ccCCCCCCCEEEEEECChhhhC
Confidence 457999999999999999875 21 357788888 68998887532 1111 22 123888 999999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ..++..++.|+.|++ +|+++|.+
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 5 456889999999998 57888865
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.09 E-value=1.7e-11 Score=97.36 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=63.8
Q ss_pred EEEeCCcchHHHHHhhcCC--CEEEEecccCCc-ccHHHHHhcCc-----ch-hhhhccccCCCCC-CCcceeEeccc-c
Q 021643 170 VMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-----IG-MYHDWCESFNTYP-RTYDLLHSSFL-L 238 (309)
Q Consensus 170 VLD~GCG~G~faa~L~~~~--v~v~~V~p~d~s-~~l~~a~eRgl-----ig-~~~d~ce~~lpfP-~sFDlVh~~~v-~ 238 (309)
|||+|||+|..+..|.+.. ..-..+.++|.+ +++..+.++.- +. ...|. ..++++ ++||+|+|+.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~--~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA--RDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT--TCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH--hHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998742 011467788888 69998888762 11 22232 136677 89999999655 8
Q ss_pred ccccccCCHHHHHHHHhhcccCCe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGG 262 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG 262 (309)
+|+. +.+.+.++.++.++|||||
T Consensus 79 ~~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSS-HHHHHHHHHHHHHTEEEEE
T ss_pred CCCC-HHHHHHHHHHHHHHhCCCC
Confidence 8865 4568899999999999998
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.07 E-value=2.6e-10 Score=102.45 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=81.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCC--CC-CCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNT--YP-RTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lp--fP-~sFDlVh~ 234 (309)
...+|||+|||+|.++..|++..- ...+.++|.+ ++++.+.++ ++ +. ...|..+ .++ ++ ++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVE-VLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHH-HHHHHcCccccceEEE
Confidence 346899999999999999877421 1246677776 566666543 32 11 1122102 244 77 99999998
Q ss_pred cccccccc-----ccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHcCCCeeeee
Q 021643 235 SFLLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 235 ~~v~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
+....... .......+|.++.|+|||||.+++. +.......+.+.+..-.|.+...
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 75432111 1112467999999999999999986 55667777777777777776643
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.07 E-value=1.9e-10 Score=113.17 Aligned_cols=94 Identities=19% Similarity=0.307 Sum_probs=71.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC--cc--hhhhhccccCCCCCCCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG--LI--GMYHDWCESFNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg--li--g~~~d~ce~~lpfP~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|+++..+++. +. .|+++|.+ ++++.+.++. +. -...| ....+++||.|++..+|+|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D----~~~l~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQD----YRDLNGQFDRIVSVGMFEH 240 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECc----hhhcCCCCCEEEEeCchhh
Confidence 358999999999999999874 43 56777877 6888887764 21 11112 1222589999999999998
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.. .+...++.++.|+|||||++++.+
T Consensus 241 vg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 241 VGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 853 346789999999999999999964
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.07 E-value=1.5e-10 Score=120.33 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c-ch-hhhhccccCCC--CC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IG-MYHDWCESFNT--YP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l-ig-~~~d~ce~~lp--fP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+... -..+++++|.+ .|++.+.++. . +. ...| +. .+| |+ ++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~-dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AI-NLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hH-hCccccCCCCEEEEEEch
Confidence 4689999999999998887642 12367788888 6888877652 1 11 1122 11 255 77 9999999999
Q ss_pred ccccccc----------cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQ----------RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~----------~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++++.+ ..++..+|.++.|+|||||.+++.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8886521 23578999999999999999999974
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.05 E-value=1.2e-09 Score=96.21 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=79.8
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--hhhhhccccCCCCCCCcc
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GMYHDWCESFNTYPRTYD 230 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g~~~d~ce~~lpfP~sFD 230 (309)
+.+.+. ...+|||+|||+|.++..++.+.. ...+..+|.+ .+++.+.++ ++. ..... ....+++++||
T Consensus 25 ~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~--d~~~~~~~~~D 99 (187)
T PRK08287 25 SKLELH--RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG--EAPIELPGKAD 99 (187)
T ss_pred HhcCCC--CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec--CchhhcCcCCC
Confidence 344443 346899999999999998887421 1245666765 466665442 221 11111 11234558899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCCee
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~ 287 (309)
+|+++.... .+..++.++.|+|+|||++++.. ..+..+++.+++++..++.
T Consensus 100 ~v~~~~~~~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 100 AIFIGGSGG------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred EEEECCCcc------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 999876543 25668999999999999999976 4556778888888888853
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.05 E-value=2.6e-10 Score=101.27 Aligned_cols=109 Identities=15% Similarity=0.227 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH----hcCc--chhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGL--IGMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~----eRgl--ig~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|+..... ..|+.+|.+ ++++.+. +.|+ +.....-.+ .++..++||+|+|+. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hccccCCccEEEehh-hh
Confidence 368999999999988887653211 235666766 4554443 2344 111111112 133348999999875 33
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ 284 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~ 284 (309)
++.+++.++.|+|||||.+++........++..+.++++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 356689999999999999999987777777777776644
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.03 E-value=6.5e-10 Score=98.39 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----c-hhhhhccccCCCCC-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I-GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----i-g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+..+|||+|||+|.++..+++....-..+..+|.+ .++..+.++.- + -...+.. ..+++ ++||+|+++.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~--~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE--ALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh--cCCCCCCcEEEEEEeeee
Confidence 34689999999999999988753211245666665 46666665531 1 1122221 35677 899999999998
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|.. ++..++.++.++|||||++++.+.
T Consensus 117 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8765 477899999999999999998753
No 51
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=1.1e-09 Score=101.21 Aligned_cols=112 Identities=16% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC---CCcceeEecccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP---RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP---~sFDlVh~~~v~~~~~ 242 (309)
..+|||+|||+|.++.+++..+.. .+.++|.+ .+++.+.++.-.....+ ...++ .+||+|+|+....
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vvani~~~--- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVANILAN--- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEEcCcHH---
Confidence 468999999999999888776542 36677776 57777665421110111 12223 2799999874332
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeeeee
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
.+..++.++.|+|||||++++++... ..+.+...++...++....
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 24568999999999999999997543 4667777778877876543
No 52
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.02 E-value=3.5e-10 Score=106.03 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=73.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-----ch----hhhhccccCCCCCCCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IG----MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-----ig----~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
++|||+|||+|-++..|++.+. +|+++|.+ +++++|.++-- .+ .+.--|..---.-..||.|+|+.+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 6799999999999999999885 56788888 68888887621 11 010001111112245999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
++|+.+ +..++.-+.+.|||||.++|++-..
T Consensus 168 leHV~d---p~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 168 LEHVKD---PQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHhC---HHHHHHHHHHHhCCCCceEeeehhh
Confidence 999975 7789999999999999999997543
No 53
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.01 E-value=4.9e-10 Score=100.91 Aligned_cols=91 Identities=25% Similarity=0.357 Sum_probs=70.4
Q ss_pred CeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 168 RNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.+|||+|||.|.+.++|.+ +++.+..| +.. +.+..+.+||+....+|.-+....|| ++||.|+.+..+.++.+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 5899999999999999998 56655443 444 46888899999655555433334599 99999999999998864
Q ss_pred CCHHHHHHHHhhcccCCeEEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++.+|.||-|| |...|++
T Consensus 91 --P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 91 --PDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred --HHHHHHHHHHh---cCeEEEE
Confidence 67899999777 5566665
No 54
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.00 E-value=4.1e-10 Score=102.02 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=72.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhcccc------CCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCES------FNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~------~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++...-.-.|+++|.+.+... .++.-...|..+. .-+++ .+||+|+|+.+..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 358999999999999988875211113444444432211 1221112222110 01366 8999999986554
Q ss_pred cccccC-C-------HHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeeee-----cceEEEEE
Q 021643 240 DVTQRC-D-------IADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY-----HDQFLVGK 298 (309)
Q Consensus 240 ~~~~~~-~-------~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~-----~e~~li~~ 298 (309)
...+.. + .+.+|.++.|+|||||.|++... .+.+..++........-.... .|..+||+
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 322110 1 25689999999999999999643 234444443333333221111 56677765
No 55
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.00 E-value=9.7e-10 Score=103.93 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=85.0
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchh
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM 214 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~ 214 (309)
.|.....-..+.+.+ .+..+.. . ..+|||+|||+|.++.+++..+. ..+.++|.+ .+++.+.++. +...
T Consensus 137 aFgtG~h~tt~l~l~-~l~~~~~-~--g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~ 210 (288)
T TIGR00406 137 AFGTGTHPTTSLCLE-WLEDLDL-K--DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDR 210 (288)
T ss_pred cccCCCCHHHHHHHH-HHHhhcC-C--CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 454444444444443 3433221 2 26899999999999988877653 256677776 5777766542 2111
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeee
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~ 288 (309)
.........+++ +.||+|+++.+.. .+..++.++.|+|||||+++++... +-.+++.+.+++- |+..
T Consensus 211 ~~~~~~~~~~~~~~~fDlVvan~~~~------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 211 LQVKLIYLEQPIEGKADVIVANILAE------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred eEEEecccccccCCCceEEEEecCHH------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 111111134555 8999999986543 2456899999999999999998643 3455666665554 6543
No 56
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.99 E-value=9.7e-10 Score=99.13 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=80.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhcCcc--hhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGLI--GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eRgli--g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..++||+|||.|.-|.+|+++|.. |+++|.+ ...++|.++++. ....|.- ...+++.||+|++..+|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~--~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLN--DFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC--CBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecch--hccccCCcCEEEEEEEec
Confidence 458999999999999999999864 4555555 234566667762 2223321 234568999999998998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HHHHHHHHHHHHc-CCCeeeeecceEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHS-LQWSTNIYHDQFLVGKK 299 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~-l~W~~~~~~e~~li~~K 299 (309)
|++ +..+.+++..|..-++|||++++... .+..-+-.+|... -.|+.....|.+--..|
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNEDVGELHR 176 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEccccceee
Confidence 886 45688999999999999999888421 1222222333322 24988776666544443
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.99 E-value=2.1e-10 Score=105.94 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=98.1
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcch-hhhhccccCCC-CC-CCcceeEecccc
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-MYHDWCESFNT-YP-RTYDLLHSSFLL 238 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig-~~~d~ce~~lp-fP-~sFDlVh~~~v~ 238 (309)
..+..+++||+|||||-++.+|.+.- -.++++|.| ||+..|.+||+-. .++.-...|++ .. +.||+|.+..||
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34568999999999999999998853 357889999 8999999999832 22211122554 33 899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-------------H---HHHHHHHHHHcCCCeeeee------------
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------------E---MINKLKPVLHSLQWSTNIY------------ 290 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------------~---~~~~i~~l~~~l~W~~~~~------------ 290 (309)
.++.+ ++.++.-..+.|.|||.|.++-.. . -...++.++.+-..++...
T Consensus 199 ~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~p 275 (287)
T COG4976 199 PYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEP 275 (287)
T ss_pred Hhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCC
Confidence 98864 788999999999999999998321 0 1345677777777766543
Q ss_pred -cceEEEEEeC
Q 021643 291 -HDQFLVGKKG 300 (309)
Q Consensus 291 -~e~~li~~K~ 300 (309)
.+.+.|++|+
T Consensus 276 v~G~L~iark~ 286 (287)
T COG4976 276 VPGILVIARKK 286 (287)
T ss_pred CCCceEEEecC
Confidence 4556777664
No 58
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.98 E-value=7.1e-10 Score=98.32 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=64.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCC-CCC-CCcceeEecccccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-TYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~l-pfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.+|||+|||+|.++.+|++... .++.++|.+ +++..+.++++.-...+. +..+ +++ ++||+|+|+.+++|+.+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~-~~~l~~~~~~sfD~Vi~~~~l~~~~d- 90 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDL-DEGLEAFPDKSFDYVILSQTLQATRN- 90 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEh-hhcccccCCCCcCEEEEhhHhHcCcC-
Confidence 4899999999999999976421 134566766 578888777753222332 2223 587 89999999999998864
Q ss_pred CCHHHHHHHHhhcccCC
Q 021643 245 CDIADVAVEMDRILRPG 261 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPG 261 (309)
...+|.||.|+++++
T Consensus 91 --~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 --PEEILDEMLRVGRHA 105 (194)
T ss_pred --HHHHHHHHHHhCCeE
Confidence 678999999987753
No 59
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.97 E-value=1.1e-09 Score=103.65 Aligned_cols=100 Identities=17% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHh----cCcch----hhhhccccCCCCCCCcceeEecc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD----RGLIG----MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~e----Rglig----~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
.+.++|||+|||+|.++..++++.-. ..++.+|.+.+++.+.+ .|+.. ..+|.. ..++| .+|+|++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~--~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY--KESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCcc--CCCCC-CCCEEEeEh
Confidence 34579999999999999999875311 23455565555655543 35422 222311 13455 479999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++++.+ .....+|.++.|.|||||+++|.|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9987753 3356799999999999999999864
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.95 E-value=1.8e-09 Score=96.49 Aligned_cols=97 Identities=27% Similarity=0.394 Sum_probs=69.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c---ch-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IG-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l---ig-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..++........+..+|.+ .+++.+.++. + +. ...|. ...+++ ++||+|+++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccCCCCCCCccEEEEec
Confidence 3589999999999998887753111356667776 5666666542 1 11 11222 135677 8999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++++.. +...+|.++.++|+|||.+++.+
T Consensus 130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 888765 46789999999999999999865
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.95 E-value=3.2e-09 Score=85.40 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--hhh-hhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--GMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++...- ..+.++|.+ .+++.+.+ .++. ... .+. +...++. .+||.|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA-PEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc-cccChhhcCCCCEEEECCc
Confidence 358999999999999999875211 346667766 45555443 2221 111 111 1113444 79999998764
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+ ....++.++.|.|||||++++.
T Consensus 98 ~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 43 2457999999999999999985
No 62
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.94 E-value=1.4e-09 Score=95.98 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=57.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccC------CCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESF------NTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~------lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|+++..++++..-...|..+|.+.+. ...++.-...|..+.. -.++ ++||+|+++...+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~ 109 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN 109 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence 3589999999999988887642111124444544322 1122211112221110 1256 7899999865321
Q ss_pred --------cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 --------DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 --------~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|.......+.+|.++.|+|||||.+++.
T Consensus 110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1111112467999999999999999994
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.93 E-value=4.9e-09 Score=94.40 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhh---hhccccCC-CCCCCcceeEecccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMY---HDWCESFN-TYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~---~d~ce~~l-pfP~sFDlVh~~~v~~~ 240 (309)
+..+|||+|||+|.++..|++.+. .+.++|.+ +++..+.++...... ..+..... ..+++||+|++..+++|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 356899999999999999998754 46777877 688887765321000 01111111 12389999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++. .++..++.++.|+++||+++.+...
T Consensus 132 ~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 753 3577899999999999988887643
No 64
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.92 E-value=9.6e-09 Score=91.57 Aligned_cols=142 Identities=12% Similarity=0.148 Sum_probs=85.4
Q ss_pred hhhcc--cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc
Q 021643 139 EAFNK--DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL 211 (309)
Q Consensus 139 e~F~~--d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl 211 (309)
..|.. +...++..+...-+..+.+.. ..+|||+|||+|.++..++..-.....|..+|.+ .+++.+.++ |+
T Consensus 13 ~~~~~~~~~~~t~~~~r~~~l~~l~~~~--~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~ 90 (198)
T PRK00377 13 EEFERDEEIPMTKEEIRALALSKLRLRK--GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV 90 (198)
T ss_pred HHHccCCCCCCCHHHHHHHHHHHcCCCC--cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 34543 334665555431223344433 3589999999999988776521011245666776 466655443 32
Q ss_pred c---hh-hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHcCCC
Q 021643 212 I---GM-YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 212 i---g~-~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W 285 (309)
. .. ..|.. ..++.. ..||.|++... ..++..++.++.|+|||||++++. -..+.+.++...++...+
T Consensus 91 ~~~v~~~~~d~~-~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 91 LNNIVLIKGEAP-EILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred CCCeEEEEechh-hhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 1 11 11211 123333 78999988532 134678999999999999999884 245566777777777777
Q ss_pred eeee
Q 021643 286 STNI 289 (309)
Q Consensus 286 ~~~~ 289 (309)
+..+
T Consensus 164 ~~~~ 167 (198)
T PRK00377 164 NLEI 167 (198)
T ss_pred CeEE
Confidence 5443
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.91 E-value=4.2e-09 Score=100.03 Aligned_cols=100 Identities=22% Similarity=0.394 Sum_probs=74.6
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHH----HHHhcCcc----hhhhhccccCCCCCC
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLS----IIFDRGLI----GMYHDWCESFNTYPR 227 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~----~a~eRgli----g~~~d~ce~~lpfP~ 227 (309)
+.+++++| .+|||+|||-|+++.+++++ ++.| ++++.| ++.. .+.++|+. -.++|| -.+..
T Consensus 66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V---~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e 136 (283)
T COG2230 66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTV---VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEE 136 (283)
T ss_pred HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEE---EEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----ccccc
Confidence 35667665 58999999999999999985 6654 445555 4444 35566774 223443 23345
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.||-|++...|+|+.. ....+++.-++++|+|||.+++-
T Consensus 137 ~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 137 PFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 6999999999999874 56789999999999999998885
No 66
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=1.1e-08 Score=94.17 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH----Hhc-Ccchhhhhcccc--CCCCCCCcce
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDR-GLIGMYHDWCES--FNTYPRTYDL 231 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a----~eR-glig~~~d~ce~--~lpfP~sFDl 231 (309)
+.+.++ .+|||+|||+|.++..|++.-- ...|.++|.+ .|++.+ .++ ++.....|..+. ..+++.+||+
T Consensus 68 l~i~~g--~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 68 FPIKKG--SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCC--CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 445444 5899999999999999987521 1246666776 455533 333 222222232111 1233467999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
|++.. .+......+|.|+.|+|||||+++|
T Consensus 145 i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 145 IYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEECC-----CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 97542 2211234568999999999999999
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=88.31 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=77.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-----chhhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-----IGMYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-----ig~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|+.++ .++..+|.+ +++..+.++ ++ .....|+ ..+++ ++||+|.++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FEPFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cccccccCceEEEEC
Confidence 3589999999999999998874 356667776 566665432 22 1122332 34566 789999987
Q ss_pred cccccccc------------------cCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVTQ------------------RCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~~------------------~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~ 289 (309)
.-+.+..+ ...+..++.++.|+|||||.+++.... ...+.+..++....++...
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 54432110 112567899999999999998876432 2345677777777776543
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.87 E-value=4.6e-09 Score=94.04 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCC-CCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTY-PRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpf-P~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++.+. .++.+|.+ .++..+.++ +. +. ...+. +..... +++||+|+++.+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV-EDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhcCCCCCccEEEehhH
Confidence 45899999999999998887653 35566666 466665543 22 11 11111 111222 389999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|.. +...+|.++.++|+|||.+++.+.
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 98876 467899999999999999998753
No 69
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.87 E-value=5.7e-09 Score=93.61 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.+. .+..+|.+ ++++.+.++- +.... .+-...++++ ++||+|++..+++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNI-TFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCc-EEEEcCchhccCCcCEEEEcchhhc
Confidence 46899999999999999988764 36777877 6888777652 11111 1111235566 89999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++ .++..++.++.|++++|+.+.+..
T Consensus 140 ~~~-~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YPQ-EDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CCH-HHHHHHHHHHHhhcCCeEEEEECC
Confidence 764 357789999999887666555443
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.86 E-value=6.2e-09 Score=92.73 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--chhhhhccccC--CCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDWCESF--NTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig~~~d~ce~~--lpfP-~sFDlVh~~~ 236 (309)
...|||+|||+|.++..|+.+... .++.++|.+ .++..+.+ .|+ +...+.-.... ..++ ++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 358999999999999999875311 256666666 46655543 333 11111101111 1256 7999998874
Q ss_pred ccccc-----cccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHH
Q 021643 237 LLSDV-----TQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLH 281 (309)
Q Consensus 237 v~~~~-----~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~ 281 (309)
-..+. ..+...+.++.++.|+|||||.+++. |.....+.+.+.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 33211 11122357899999999999999886 55555555544443
No 71
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.84 E-value=8.2e-09 Score=94.81 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=98.5
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc-----chhhhhccccCCCCC-CCcceeE
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl-----ig~~~d~ce~~lpfP-~sFDlVh 233 (309)
+...+.++|.|+|||+|.....|.++ +. -.|+++|.| +|++.|.+|.. .+.+++|| | +.+|+++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~dllf 97 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPTDLLF 97 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCccchhh
Confidence 44466889999999999999999986 32 247899999 79999999986 35666665 5 8899999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC--HH--HHHHHHHHHHcCCCeeeee-------------------
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--LE--MINKLKPVLHSLQWSTNIY------------------- 290 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--~~--~~~~i~~l~~~l~W~~~~~------------------- 290 (309)
++-+|+-+++ ..++|.-.---|.|||.+.+.-. .+ .=.-|++.++..-|.....
T Consensus 98 aNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 98 ANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 9999987764 45688888899999999999722 11 2234556666556653322
Q ss_pred ---cceEEEEEeCcCCCC
Q 021643 291 ---HDQFLVGKKGFWRPT 305 (309)
Q Consensus 291 ---~e~~li~~K~~w~~~ 305 (309)
..++=||.+.|-.+-
T Consensus 175 a~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 175 APLACRVDIWHTTYYHQL 192 (257)
T ss_pred CcccceeeeeeeeccccC
Confidence 456777877776543
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.83 E-value=8.3e-09 Score=93.33 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..+.+.+. .++.+|.+ .++..+.++ ++.. ...+.. .....+ ++||+|+++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAE-ELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHH-HhhhhcCCCccEEEEhhH
Confidence 346799999999999999988754 45666766 466666554 2211 111211 122234 89999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|..+ ...+|.++.|+|+|||.+++.+.
T Consensus 124 l~~~~~---~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 LEHVPD---PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhccCC---HHHHHHHHHHHcCCCcEEEEEec
Confidence 998764 67799999999999999999753
No 73
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.82 E-value=7.7e-09 Score=94.23 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=66.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH-HhcCcch------------------hhhhccccCCCCC-
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII-FDRGLIG------------------MYHDWCESFNTYP- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a-~eRglig------------------~~~d~ce~~lpfP- 226 (309)
.+|||+|||.|..+.+|+++|. +|+++|.+ .+++.+ .+.|+.. ...|..+ ..+..
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~ 111 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LTAADL 111 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CCcccC
Confidence 5899999999999999999875 56777777 456553 3334310 1222111 11112
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+||.|+-..+++|++. .....++..|.|.|||||++++.
T Consensus 112 ~~fD~i~D~~~~~~l~~-~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALPE-EMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCCH-HHHHHHHHHHHHHcCCCCeEEEE
Confidence 67999999999998863 45678999999999999975443
No 74
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.82 E-value=1.1e-08 Score=93.61 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=68.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH-HhcCcchh--------------hhhccccCCCC---C-C
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII-FDRGLIGM--------------YHDWCESFNTY---P-R 227 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a-~eRglig~--------------~~d~ce~~lpf---P-~ 227 (309)
.+|||+|||.|..+.+|+++|. +|+++|.+ .+++.+ .++|+... +.-++.....+ . .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 5899999999999999999885 56777877 456644 45565211 00011122322 4 6
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
+||+|+-..+|+|++. ....+++..+.++|||||.+++
T Consensus 116 ~fd~v~D~~~~~~l~~-~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPE-EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCH-HHHHHHHHHHHHHcCCCCeEEE
Confidence 8999999999999863 4567899999999999986444
No 75
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.80 E-value=1.9e-08 Score=96.43 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=66.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC-EEEEecccCCcccHHHHHhcCcch------hhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAPDTLSIIFDRGLIG------MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p~d~s~~l~~a~eRglig------~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.++|||+|||.|.++-.++.++. .|+.|.|.... ..++..-+.+++ .+-.--| .+|..++||+|+|-+||.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE-~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVE-DLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchh-hccccCCcCEEEEeeehh
Confidence 47999999999999988888765 45555554332 223322222211 0000001 355569999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|..+ +...|.++...|||||.+|+-
T Consensus 194 Hrr~---Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 HRRS---PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ccCC---HHHHHHHHHHhhCCCCEEEEE
Confidence 8764 678999999999999999985
No 76
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.76 E-value=2.8e-08 Score=98.00 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=73.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-----chhhhhccccCCCCC-CCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-----IGMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-----ig~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
.+|||+|||+|..+..++++... ..|+.+|.+ .+++.+.+. +. +..+.+ .....++ .+||+|+|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCCCEEEEEECc
Confidence 58999999999999999875311 256777877 577776643 11 111111 1123345 7999999987
Q ss_pred cccccc--ccCCHHHHHHHHhhcccCCeEEEEEe--CHHHHHHHHHHHH
Q 021643 237 LLSDVT--QRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLH 281 (309)
Q Consensus 237 v~~~~~--~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~ 281 (309)
-|+... ......+++.+..|+|||||.+++.- ..++..+++++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg 355 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 355 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC
Confidence 775322 11124678999999999999988874 3455666666543
No 77
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.76 E-value=7.3e-09 Score=96.24 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhc---cc-cCCCC---CCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDW---CE-SFNTY---PRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~---ce-~~lpf---P~sFDlVh~~~v~ 238 (309)
-+.++|+|||+|-.+..+++.. -+|+++|.+ .||+++.+.-.+...|.- .+ ...++ ++|.|||.|..++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 4589999999994444445543 357788888 699988765433212110 00 01222 4999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCe-EEEE---EeCHHHHHHHHHHHHcCCCe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGG-YVLV---QDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG-~lii---~D~~~~~~~i~~l~~~l~W~ 286 (309)
| ++++++++.+++|||||.| .+.+ +|..-...++.++..+++|+
T Consensus 111 H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 111 H----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred H----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 6 5678999999999999977 4333 44433455566666666665
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.74 E-value=7e-08 Score=89.10 Aligned_cols=129 Identities=21% Similarity=0.407 Sum_probs=81.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc---Cc---ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GL---IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR---gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..++.... ...+..+|.+ .+++.+.++ +. +. ...|+ ..+++ ++||+|+++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45799999999999999987531 1246667776 566666654 21 11 11222 34555 89999998622
Q ss_pred ccc------ccc-----------------cCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe-eeee---
Q 021643 238 LSD------VTQ-----------------RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS-TNIY--- 290 (309)
Q Consensus 238 ~~~------~~~-----------------~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~-~~~~--- 290 (309)
+.. ... ......++.++.++|||||++++.-....-+.++.++....+. +...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 110 000 0114578899999999999999976555556677777766654 2221
Q ss_pred --cceEEEEEe
Q 021643 291 --HDQFLVGKK 299 (309)
Q Consensus 291 --~e~~li~~K 299 (309)
.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 566666654
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.73 E-value=3.2e-08 Score=89.75 Aligned_cols=115 Identities=20% Similarity=0.352 Sum_probs=76.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--hh-hhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GM-YHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g~-~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..++.... ...+.++|.+ .+++.+.+. |+. .. ..| ...+++ ++||+|+|+--+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d---~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSD---WFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc---hhccCcCCceeEEEECCCC
Confidence 4799999999999999987521 1245666765 466555432 331 11 122 123577 899999996332
Q ss_pred cc------cccc-----------------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe
Q 021643 239 SD------VTQR-----------------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~~------~~~~-----------------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 286 (309)
.. +... .....++.++.|+|+|||.+++.......+.++++++...++
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFA 235 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence 21 1100 012467899999999999999987666667788888777775
No 80
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.73 E-value=2.5e-08 Score=74.91 Aligned_cols=94 Identities=24% Similarity=0.360 Sum_probs=62.6
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH---hcCc---chhh-hhccccCCCCC-CCcceeEeccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF---DRGL---IGMY-HDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~---eRgl---ig~~-~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
+|+|+|||+|.++..+...+ ...+..+|.+ +.+..+. +.+. +..+ .+.. ...+.+ ++||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAE-ELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChh-hhccccCCceEEEEEcccee
Confidence 48999999999999888732 1345556655 3444443 1111 1111 2221 122234 8999999999988
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+. ......++..+.+.|||||.+++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 63 234678999999999999999886
No 81
>PTZ00146 fibrillarin; Provisional
Probab=98.72 E-value=1.9e-08 Score=96.00 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=64.3
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhc-Ccchhhhhcccc-CCCCC-CCcce
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDR-GLIGMYHDWCES-FNTYP-RTYDL 231 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eR-glig~~~d~ce~-~lpfP-~sFDl 231 (309)
+.|.++ .+|||+|||+|.|+..+++.--..-.|.++|.+ +++..+.+| ++.....|.... ....+ .+||+
T Consensus 128 l~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 345444 589999999999999998852000123444544 356666654 444444443211 12234 78999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|+++... ..+...++.|++|+|||||+|+|.
T Consensus 206 V~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9987632 223445778999999999999994
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=2e-08 Score=90.27 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=58.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhh-hhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.+++.|++.-.-.-.|..+|.+ ++++.+.++ |+. ... .|. . ....+ ++||.|++..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-~-~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-K-RGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc-c-cCCccCCCccEEEEcc
Confidence 3589999999999998887631000135556665 455555432 331 111 221 1 12223 8999999987
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+.++ ..|+.|+|+|||++++..
T Consensus 151 ~~~~~---------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTI---------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchh---------hHHHHHhcCcCcEEEEEE
Confidence 77544 347889999999998864
No 83
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.7e-08 Score=92.27 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----c--c-hhhhhccccCCC-CC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----L--I-GMYHDWCESFNT-YP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----l--i-g~~~d~ce~~lp-fP-~sFDlVh~~ 235 (309)
...||.+|||||.--.++-..+. -+|+.+|.+ +|-+++..+- + . -++++ .| .+| .+ .|||.|+|.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~-ge-~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVAD-GE-NLPQLADGSYDTVVCT 152 (252)
T ss_pred ccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeec-hh-cCcccccCCeeeEEEE
Confidence 34689999999976555543332 245556665 4555544331 1 1 12222 23 566 78 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.++-... +.++.|.|+.|+|||||.+++-++.
T Consensus 153 lvLCSve---~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 153 LVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEeccC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9997544 4789999999999999999999875
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=98.71 E-value=6.7e-08 Score=87.68 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=70.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..++..+. ..++.+|.+ .++..+.++ |+. . ...|+ ...++ ++||+|+++--+.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---ARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hhhccCCCeeEEEECCCCC
Confidence 5899999999999999887653 246667776 466655442 331 1 11232 12356 8999999974322
Q ss_pred cccc------------------cCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCe
Q 021643 240 DVTQ------------------RCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWS 286 (309)
Q Consensus 240 ~~~~------------------~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~ 286 (309)
+-.. ...+.+++.++.|+|||||.+++..... ...++.+++++-.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD 178 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence 1110 0015678899999999999999843221 233444444444554
No 85
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=1.6e-08 Score=87.75 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=53.0
Q ss_pred ccCCc-ccHHHHHhcCc---------chhhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEE
Q 021643 196 PIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV 264 (309)
Q Consensus 196 p~d~s-~~l~~a~eRgl---------ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~l 264 (309)
++|.+ +|++.|.+|.- +.....-++ .+||+ ++||+|.+..+++++. +...+|+|++|+|||||.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI-DLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechh-hCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 46777 69998865521 111111122 58999 8999999999998876 4688999999999999999
Q ss_pred EEEeC
Q 021643 265 LVQDT 269 (309)
Q Consensus 265 ii~D~ 269 (309)
+|.|-
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 99874
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.70 E-value=7e-08 Score=90.98 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=84.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC-CCcceeEec--
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP-RTYDLLHSS-- 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP-~sFDlVh~~-- 235 (309)
.+|||+|||+|.++..|+...- ...+.++|.+ .++..+.+. |+. -...|+ ..+++ +.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hccCcCCCccEEEECCC
Confidence 4799999999999999987421 1246677777 577666653 331 112343 23556 589999986
Q ss_pred -----------ccccccccc---------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHH-cCCCee-eee---
Q 021643 236 -----------FLLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH-SLQWST-NIY--- 290 (309)
Q Consensus 236 -----------~v~~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~-~l~W~~-~~~--- 290 (309)
.++.|.+.. .....++.+..+.|+|||++++......-+.+..+.. ...|.. ...
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 122222210 1256789999999999999999877666677787776 456643 233
Q ss_pred --cceEEEEEeC
Q 021643 291 --HDQFLVGKKG 300 (309)
Q Consensus 291 --~e~~li~~K~ 300 (309)
.++++++++.
T Consensus 272 ~g~~R~~~~~~~ 283 (284)
T TIGR00536 272 NGKERVVLGFYH 283 (284)
T ss_pred CCCceEEEEEec
Confidence 5777777653
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.69 E-value=1.9e-08 Score=95.68 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------Cc--chhhhhccccCCCCCCC-----ccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL--IGMYHDWCESFNTYPRT-----YDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------gl--ig~~~d~ce~~lpfP~s-----FDlV 232 (309)
..+|||+|||+|.++..|++.......++++|.| +||+.+.++ ++ .+...|..+ .++++.. ..++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~-~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ-PLALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc-hhhhhcccccCCeEEE
Confidence 3589999999999999998753112467899999 688888765 12 123344322 2445522 3345
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++...+.++. ..+...+|+++.++|+|||.|+|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5556677765 345678999999999999999984
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.69 E-value=6.1e-08 Score=94.35 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=76.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
.+|||+|||+|.++..++++.-. ..++.+|.+ .++..+.+ .++.+.... .......++.||+|+|+--||+..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~-~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFA-SNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-cccccccCCCccEEEECCCccCCc
Confidence 47999999999999999875311 246677776 56666543 233221111 111122248999999998887532
Q ss_pred c--cCCHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHHHHHcCCCeeeeecceEEE
Q 021643 243 Q--RCDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVLHSLQWSTNIYHDQFLV 296 (309)
Q Consensus 243 ~--~~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~~~l~W~~~~~~e~~li 296 (309)
. ....++++.++.|.|||||.++|..+ ..+-..+++.... .+......++-|
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~--~~~la~~~~f~v 331 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS--HEVLAQTGRFKV 331 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC--eEEEEeCCCEEE
Confidence 1 22367899999999999999977643 2333444444332 244444444433
No 89
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.68 E-value=1.4e-07 Score=82.42 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=69.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|..+..++.+... ..|..+|.+ ++++.+.+. ++. . ..+|+ ..+.+ ..||+|+|+-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~---~~~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDL---FEALPDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST---TTTCCTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccc---cccccccceeEEEEccc
Confidence 458999999999999999986432 236667776 566665442 332 1 22232 34556 99999999844
Q ss_pred cccccc--cCCHHHHHHHHhhcccCCeEEEEE--eCHHHHHHHHHHHH
Q 021643 238 LSDVTQ--RCDIADVAVEMDRILRPGGYVLVQ--DTLEMINKLKPVLH 281 (309)
Q Consensus 238 ~~~~~~--~~~~~~~L~Em~RVLRPGG~lii~--D~~~~~~~i~~l~~ 281 (309)
++.-.+ ..-..+++.+..+.|||||.+++. .....-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 332111 112578999999999999988543 33334444555544
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.68 E-value=6.9e-08 Score=95.52 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=69.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccH----HHHHhcCcc--h-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL----SIIFDRGLI--G-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l----~~a~eRgli--g-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+||+|||+|.++..++...-. .++.++|.+ .++ ..+.++|+. . +..|.-+-...+| ++||.|++++-.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 47999999999999999975311 245566665 344 344445551 1 1222111123578 999999986432
Q ss_pred ccccccC----CHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHH
Q 021643 239 SDVTQRC----DIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVL 280 (309)
Q Consensus 239 ~~~~~~~----~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~ 280 (309)
. |+... -...+|.|+.|+|||||.+.++ |..++.+.+.+..
T Consensus 203 P-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 203 P-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF 248 (390)
T ss_pred C-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence 2 22111 1257999999999999998886 5555555544444
No 91
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.6e-07 Score=89.93 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=76.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC--CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP--RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP--~sFDlVh~~~v~ 238 (309)
+.++|||+|||+|-++.+.++.|.. .+.++|.- .+++.+++. |+....+.-.-..+..+ +.||+|+||- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 3579999999999999888887642 24455553 355555543 33210111011135566 5999999985 4
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
.+. +..+..++.|.|||||+++++--.+ ..+.+.+.+.+-.|++.-.
T Consensus 239 A~v-----l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 AEV-----LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHH-----HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 322 4568999999999999999995432 3556666666667776543
No 92
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=5.7e-08 Score=90.37 Aligned_cols=101 Identities=17% Similarity=0.294 Sum_probs=74.2
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc------chhhhhccccCC--CCC-CCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFN--TYP-RTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl------ig~~~d~ce~~l--pfP-~sFDlVh~~~ 236 (309)
.+||.+|||.|...--|.+. +---+.|-+.|.+ +++.+..++-- .....|.+...+ |.+ +++|+|.+.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999987666652 2112456777887 67777665532 223345444433 334 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+.++. ..+..++..+.|+|||||.++++|-
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 9998863 5688999999999999999999983
No 93
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.64 E-value=6.6e-08 Score=89.16 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=82.0
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhh--hhccccCCCCC-CCcceeEe
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMY--HDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~--~d~ce~~lpfP-~sFDlVh~ 234 (309)
.++++.+..+-|||||||+|--+..|.+.+- -.+++|.| .||++|.+|-+.|.+ .|-. .-+||+ +|||-+++
T Consensus 43 LLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG-~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 43 LLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMG-EGLPFRPGTFDGVIS 118 (270)
T ss_pred HhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecC-CCCCCCCCccceEEE
Confidence 4555555568899999999999999988762 23566777 699999987654322 2322 369998 99999998
Q ss_pred cccccccc--------ccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHH
Q 021643 235 SFLLSDVT--------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH 281 (309)
Q Consensus 235 ~~v~~~~~--------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~ 281 (309)
...+.-+- ....+..++.-++..|++|+..++.=-.+..+.++.|.+
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~ 173 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQ 173 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHH
Confidence 65553111 011255678889999999999999854443344444443
No 94
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.62 E-value=1.4e-07 Score=86.34 Aligned_cols=106 Identities=15% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.-.|-|+|||-+.+|..+... .|...++++.... ++ .-|. +..|.+ ++.|++++...| ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~----------Vt--acdi--a~vPL~~~svDv~VfcLSL--MG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR----------VT--ACDI--ANVPLEDESVDVAVFCLSL--MG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT----------EE--ES-T--TS-S--TT-EEEEEEES-----S--
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC----------EE--EecC--ccCcCCCCceeEEEEEhhh--hC--
Confidence 458999999999999887542 3444444443211 11 1121 368999 999999875444 32
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEeCHH---HHHHHHHHHHcCCCeeeee
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~~ 290 (309)
.++.++|.|.+|||||||.+.|.+-.. -++..-+..+++..+....
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence 357889999999999999999997544 3445556667888887765
No 95
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.61 E-value=6.4e-08 Score=93.31 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-------hhhhhccccCCCC-CCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-------GMYHDWCESFNTY-PRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-------g~~~d~ce~~lpf-P~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++++. +|+++|.+ +|++.+.++.-. ....++....++. +++||+|+|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 35899999999999999998764 57788888 689888776321 0111111112333 489999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++|+++. ....++..+.+ +.+||.++.
T Consensus 222 L~H~p~~-~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEecCHH-HHHHHHHHHHh-hcCCEEEEE
Confidence 9998642 34456677765 456666443
No 96
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.60 E-value=8e-08 Score=87.02 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.+++.|+....-...|+.+|.+ ++++.+.++ |+ +. ...|- . ..+.+ +.||+|++...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~-~-~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG-T-LGYEENAPYDRIYVTAA 154 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-c-cCCCcCCCcCEEEECCC
Confidence 4689999999999998887641101134555655 466666543 32 11 11221 1 12334 89999998766
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.++ ..++.+.|||||.+++--
T Consensus 155 ~~~~---------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDI---------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccc---------hHHHHHhhCCCcEEEEEE
Confidence 5432 346677899999998853
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.58 E-value=1.3e-07 Score=90.43 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=80.6
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCC---EEEEecccCCcccHHHHHhcCcchhhh
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL---WVMNVVPIDAPDTLSIIFDRGLIGMYH 216 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v---~v~~V~p~d~s~~l~~a~eRglig~~~ 216 (309)
.|-..+.---+.+.+ ++..+. .. ..+|||+|||+|-+|.+-++.|. ...++.|.....+.+.+...|+...+.
T Consensus 139 AFGTG~H~TT~lcl~-~l~~~~-~~--g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLE-LLEKYV-KP--GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp SS-SSHCHHHHHHHH-HHHHHS-ST--TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred cccCCCCHHHHHHHH-HHHHhc-cC--CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 565554444455553 554432 12 35999999999998776666553 333333332222334444445422111
Q ss_pred hccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeeeee----
Q 021643 217 DWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNIY---- 290 (309)
Q Consensus 217 d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~~---- 290 (309)
. ......+ ..||+|.|+-... -+..++.++.+.|+|||+++++--. +..+.+.+..+. .++..-.
T Consensus 215 -v-~~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 215 -V-SLSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG 285 (295)
T ss_dssp -E-SCTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET
T ss_pred -E-EEecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC
Confidence 0 0124456 9999999985443 1456888999999999999998432 233455555555 6665433
Q ss_pred cceEEEEEeC
Q 021643 291 HDQFLVGKKG 300 (309)
Q Consensus 291 ~e~~li~~K~ 300 (309)
.--.++++|+
T Consensus 286 ~W~~l~~~Kk 295 (295)
T PF06325_consen 286 EWVALVFKKK 295 (295)
T ss_dssp TEEEEEEEE-
T ss_pred CEEEEEEEeC
Confidence 2224555553
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.58 E-value=2.5e-07 Score=92.41 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=84.3
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc-c-hhhhhccccCCCCCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl-i-g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..|+.. +. ..+.++|.+ .+++.+.++ |. + -...|+.+...+-.++||+|+|+-=+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 48999999999999988763 21 246677777 577776654 32 1 122333221122126899999963111
Q ss_pred -------------ccc------ccCC---HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee-e-----c
Q 021643 240 -------------DVT------QRCD---IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI-Y-----H 291 (309)
Q Consensus 240 -------------~~~------~~~~---~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~-~-----~ 291 (309)
|.+ ...+ ...++.+..+.|+|||++++.-..+.-+.+++++++..|+... . .
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGL 410 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCC
Confidence 000 0011 3477888889999999998876666677888888888776432 2 6
Q ss_pred ceEEEEEeC
Q 021643 292 DQFLVGKKG 300 (309)
Q Consensus 292 e~~li~~K~ 300 (309)
++++++++.
T Consensus 411 dR~v~~~~~ 419 (423)
T PRK14966 411 DRVTLGKYM 419 (423)
T ss_pred cEEEEEEEh
Confidence 788887753
No 99
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.58 E-value=1e-07 Score=86.02 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=57.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.+++.|++..-....|..+|.+ ++++.+.++ |+ +. ...|.. ..... ..||+|+++..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~--~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT--QGWEPLAPYDRIYVTAA 155 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc--cCCcccCCCCEEEEcCC
Confidence 4589999999999999998752111124555655 466655543 43 11 122321 11223 78999998765
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
..+ +..++.+.|+|||++++.
T Consensus 156 ~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 GPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred ccc---------ccHHHHHhcCcCcEEEEE
Confidence 443 345678999999999885
No 100
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.56 E-value=7.5e-08 Score=87.91 Aligned_cols=101 Identities=23% Similarity=0.389 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCCCCcceeEeccccc
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
+...+.++|+|+|+|+|.++.+++++ +-. .++-.|.+..++.+.+.. +.-.-+|+ +-|+|. +|+++.+++||
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence 34556789999999999999999873 311 233345554444444421 22223342 467788 99999999999
Q ss_pred cccccCCHHHHHHHHhhcccCC--eEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPG--GYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPG--G~lii~D~ 269 (309)
+|.+ .+...+|+.+.+.|+|| |.++|.|.
T Consensus 170 ~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9975 45678999999999999 99999874
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.53 E-value=4.4e-07 Score=80.55 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..++...- ...|..+|.+ .+++.+.++ |+ +.....-++..++.. ..+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 46899999999999988875310 1245666665 466655442 33 111111011112222 4467665421
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQ 284 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~ 284 (309)
...+..++.++.|+|+|||++++.... +.+..+.+..+.+.
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 134678999999999999999988643 34455556665543
No 102
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.53 E-value=2.3e-07 Score=87.82 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++.+|+.... ...+.++|.+ .+++.+.++ |+. . ...|. ..+++ ++||+|+++=
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 35899999999999999987521 1246677777 577666554 431 1 11221 23456 7899999861
Q ss_pred ------cc-------ccccc------c---CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCC
Q 021643 237 ------LL-------SDVTQ------R---CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 237 ------v~-------~~~~~------~---~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 285 (309)
.+ .|.+. . .....++.++.++|+|||++++.-.... +.++++.....|
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 11 11110 0 0135789999999999999998655433 677777765433
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.52 E-value=2.3e-07 Score=89.23 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=71.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--h-hhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--M-YHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~-~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||.|||+|+++...+..+. .+.++|.+ .++..+..+ |+.. . ..|. ..+|++ ++||+|+++-=
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~--~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA--TKLPLSSESVDAIATDPP 257 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch--hcCCcccCCCCEEEECCC
Confidence 35899999999999877665543 45666776 466654432 3321 1 2232 247787 89999999622
Q ss_pred cc---cccc--c-CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCC
Q 021643 238 LS---DVTQ--R-CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 238 ~~---~~~~--~-~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 285 (309)
+. .... . .-..++|.++.|+|||||++++....+ ..++++++.-.|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 11 1110 0 114789999999999999988876543 244556666666
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.50 E-value=4.2e-07 Score=85.05 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---chhhh-hccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYH-DWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~-d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|..+..|+++ +- ..|++++.. .+.+.|.+. ++ +.+++ |.-+-.-..+ .+||+|+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 678999999999999999987 31 234555554 233333321 12 22222 2111122344 689999997
Q ss_pred ccc---------------ccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 236 FLL---------------SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~---------------~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
==+ .++.-.++++++++=..++|||||++.+.-..+-+.++-.++++++|....
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 111 122334679999999999999999999999999999999999999999754
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.48 E-value=4.6e-07 Score=86.89 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=70.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEecc-
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSSF- 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~- 236 (309)
.+|||+|||+|.++.+|+.... ...++++|.+ .+++.|.+. |+ +. ...|+ ..++| ++||+|+|+=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~---~~~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL---FAALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch---hhhCCCCCccEEEECCC
Confidence 5799999999999999987421 1356777877 567666544 43 11 11232 22456 7999999861
Q ss_pred -----c-------cccccc------cC---CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcC
Q 021643 237 -----L-------LSDVTQ------RC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSL 283 (309)
Q Consensus 237 -----v-------~~~~~~------~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l 283 (309)
- +.|.+. .. ....++.++.+.|+|||++++....+ ..++.++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 0 112111 01 13578999999999999999864433 34576666543
No 106
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.47 E-value=1e-07 Score=76.56 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=60.8
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+|||+|.++.++++.+ ...+..+|.. ..++.+..+ ++ +. ...|..+...+++ ++||+|+++--+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 79999999999999988765 2355666665 345555443 22 11 1112211112467 999999998655
Q ss_pred cccc-----ccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVT-----QRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.... .......++.++.|+|||||.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4321 1123567899999999999998875
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=98.46 E-value=4.8e-07 Score=86.69 Aligned_cols=132 Identities=10% Similarity=0.095 Sum_probs=77.3
Q ss_pred CCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHh-----cCcc----hhhhhccccCCCCC-CCcceeE
Q 021643 166 SVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFD-----RGLI----GMYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~e-----Rgli----g~~~d~ce~~lpfP-~sFDlVh 233 (309)
..++|+|+|||.|++.+.+.. .-.-...+..+|.+ ++++.|++ .|+- -..+|..+ .+-+ +.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~--~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD--VTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh--cccccCCcCEEE
Confidence 568999999998876555432 11111235556665 45554443 2331 11123211 2223 8899999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH---HHHHHHHHHHcCCCeeeee-------cceEEEEEeCc
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNIY-------HDQFLVGKKGF 301 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~~-------~e~~li~~K~~ 301 (309)
+. +++++. ..+..++|..+.|.|||||+++++-... .+-..-....--.|+.... -.-+.|++|.-
T Consensus 201 ~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 201 LA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred Ee-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 99 887773 3467899999999999999999985211 1111000001116765443 34578888865
No 108
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.45 E-value=5.3e-07 Score=80.91 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=58.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chh-hhhccccCCCCC--CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGM-YHDWCESFNTYP--RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~-~~d~ce~~lpfP--~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+.... .+..+|.+ ++++.+.++ |+ +.. ..| ...+++ ++||+|++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD---GWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC---cccCCCcCCCcCEEEEcc
Confidence 46899999999999988877532 35555655 466655543 33 111 112 122333 7999999876
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+.+ +..++.+.|+|||.+++.-.
T Consensus 153 ~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 5543 34567899999999998644
No 109
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.43 E-value=2.8e-07 Score=89.49 Aligned_cols=132 Identities=18% Similarity=0.291 Sum_probs=74.7
Q ss_pred cchhHHHHHH-HHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----------
Q 021643 144 DTTHWYALVS-DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----------- 210 (309)
Q Consensus 144 d~~~W~~~v~-~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----------- 210 (309)
.=.+|.+.+. ..|...+. ...+..+|||+|||-||=..-....++ -.++++|.+ ..++.|.+|-
T Consensus 40 ~fNNwvKs~LI~~~~~~~~-~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~ 116 (331)
T PF03291_consen 40 NFNNWVKSVLIQKYAKKVK-QNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQ 116 (331)
T ss_dssp HHHHHHHHHHHHHHCHCCC-CTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT
T ss_pred HHhHHHHHHHHHHHHHhhh-ccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhcccccccc
Confidence 3356766443 23544322 112457999999999883333333332 345666776 4677776664
Q ss_pred ----cch--hhhhccc----cCCCCC-CCcceeEecccccccc-ccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHH
Q 021643 211 ----LIG--MYHDWCE----SFNTYP-RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKL 276 (309)
Q Consensus 211 ----lig--~~~d~ce----~~lpfP-~sFDlVh~~~v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i 276 (309)
... ...|-.. ..++.+ ..||+|-|.++||+.- .......+|.-+.+.|||||+||.+... .++.++
T Consensus 117 ~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l 196 (331)
T PF03291_consen 117 YRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRL 196 (331)
T ss_dssp SEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCH
T ss_pred ccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHH
Confidence 110 1111000 123333 5999999999998743 3334667999999999999999998543 344555
Q ss_pred HH
Q 021643 277 KP 278 (309)
Q Consensus 277 ~~ 278 (309)
++
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 110
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.3e-06 Score=82.90 Aligned_cols=113 Identities=21% Similarity=0.364 Sum_probs=79.2
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhhhhccccCCCCCCCcceeEec--ccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMYHDWCESFNTYPRTYDLLHSS--FLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~~d~ce~~lpfP~sFDlVh~~--~v~ 238 (309)
+|||+|||+|-.|.+|+..... .+|.++|.+ +++..|.+ .|+. .+..|| +.+.+++||+|+|| ++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl---f~~~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL---FEPLRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec---ccccCCceeEEEeCCCCCC
Confidence 7999999999999999986421 367788887 56666644 3531 112233 45566799999987 111
Q ss_pred c-----------ccc------ccC---CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCC
Q 021643 239 S-----------DVT------QRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 239 ~-----------~~~------~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 285 (309)
. |.+ ..+ -..+++.+..++|+|||.+++.-.....+.++++.....+
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF 255 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC
Confidence 1 110 111 2567899999999999999998777777888888888884
No 111
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=1.2e-06 Score=87.33 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccchhh--hhccccCCCC--C-CCcceeEec-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMY--HDWCESFNTY--P-RTYDLLHSS- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~--~d~ce~~lpf--P-~sFDlVh~~- 235 (309)
..+|||+|||+|+.+..+++.-- ...|+++|.+ +++..+.++ |+.... .+-.....++ + ++||.|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46899999999999988887421 1246777776 466555433 442101 1100111233 5 889999853
Q ss_pred -----ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 236 -----FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 236 -----~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
+++++.++- .+ -.++|.++.|+|||||++++++. .+.-..|+.+++
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 345433210 00 25699999999999999999853 233344455543
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.38 E-value=1e-06 Score=82.06 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=77.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCC--CCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNT--YPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lp--fP~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..++.. +. ..++.+|.+ .+++.+.+. |..-...|+.+ .++ +.+.||+|+++-=+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~-~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYD-ALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechh-hcchhcCCCEeEEEECCCCC
Confidence 47999999999999988763 21 245667776 566665543 22111223211 122 236799999872111
Q ss_pred ------cccc--------------cC---CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 240 ------DVTQ--------------RC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 240 ------~~~~--------------~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
..++ .. -+.+++....++|+|||.+++.-..+....+..+++..+|+..+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceee
Confidence 0000 00 035788888899999999999877666778888888877876655
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.37 E-value=1.3e-06 Score=89.11 Aligned_cols=116 Identities=15% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..++.. +- ..++++|.+ .+++.|.+. |+.. ...|+ ..+++ ++||+|+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 357999999999999888753 21 246677776 577776654 3311 11232 23455 789999995
Q ss_pred c--------------cccccc------ccCC---HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee
Q 021643 236 F--------------LLSDVT------QRCD---IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~--------------v~~~~~------~~~~---~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 287 (309)
- +..|.+ ...+ ...++.++.++|+|||.+++.-....-+.+..++....|+.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNI 288 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCc
Confidence 1 111111 0111 34578899999999999998765556677888887777764
No 114
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.32 E-value=8.2e-07 Score=83.68 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccccC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~ 245 (309)
...|-|+|||-|-+|.. ....|..+++++++.. -. .-|. +..|.+ +|.|++++ ||+.+. .
T Consensus 181 ~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~---------V~---~cDm--~~vPl~d~svDvaV~--CLSLMg--t 241 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-ERHKVHSFDLVAVNER---------VI---ACDM--RNVPLEDESVDVAVF--CLSLMG--T 241 (325)
T ss_pred ceEEEecccchhhhhhc-cccceeeeeeecCCCc---------ee---eccc--cCCcCccCcccEEEe--eHhhhc--c
Confidence 35799999999987751 1245677777766432 01 0111 258999 99999875 455443 4
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCHHHHH---HHHHHHHcCCCeeeee
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTLEMIN---KLKPVLHSLQWSTNIY 290 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~~~~~---~i~~l~~~l~W~~~~~ 290 (309)
++.+++.|.+|||||||.++|.+-..-.. ...+-+.+|.++....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 68899999999999999999987654333 3444457788877655
No 115
>PRK04457 spermidine synthase; Provisional
Probab=98.30 E-value=3e-06 Score=79.44 Aligned_cols=131 Identities=8% Similarity=0.052 Sum_probs=75.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-cc------hhh-hhccccCC-CCCCCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-LI------GMY-HDWCESFN-TYPRTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-li------g~~-~d~ce~~l-pfP~sFDlVh~~ 235 (309)
..++|||+|||+|.++.+++.... ...++.+|.. .+++.+.+.. +. .+. .|. ..++ ..+++||+|+++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da-~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADG-AEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH-HHHHHhCCCCCCEEEEe
Confidence 357899999999999998876421 1345666665 5777776652 11 111 221 1122 234789999986
Q ss_pred ccccc--ccccCCHHHHHHHHhhcccCCeEEEEE---eCHHHHHHHHHHHHcCC---Ceeeee--cceEEEEEe
Q 021643 236 FLLSD--VTQRCDIADVAVEMDRILRPGGYVLVQ---DTLEMINKLKPVLHSLQ---WSTNIY--HDQFLVGKK 299 (309)
Q Consensus 236 ~v~~~--~~~~~~~~~~L~Em~RVLRPGG~lii~---D~~~~~~~i~~l~~~l~---W~~~~~--~e~~li~~K 299 (309)
. +.. .+.......++.++.++|+|||.+++. ........++.+.+.+. +..... ...++++.|
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 3 321 111112368999999999999999984 22222333444444333 222221 235677766
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=2.2e-06 Score=85.51 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=67.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCC-CC-CCcceeEecc-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNT-YP-RTYDLLHSSF- 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lp-fP-~sFDlVh~~~- 236 (309)
..+|||+|||+|+.+..+++...- ..|+.+|.+ .+++.+.++ |+ +. ..+|..+ ..+ ++ ++||.|+++-
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~-~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD-PAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc-chhhcccCCCCEEEECCC
Confidence 468999999999999998875311 246677776 466655443 33 11 1223211 122 45 7899999432
Q ss_pred -----cccccc------ccCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 237 -----LLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 237 -----v~~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
++.+-+ ...+ ..++|.+..++|||||++++++. .+..+.++..++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 121110 0011 23689999999999999999864 333445555553
No 117
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.29 E-value=1.2e-06 Score=80.47 Aligned_cols=121 Identities=16% Similarity=0.276 Sum_probs=71.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEe-cccCCcccHHHHHh-----cCcch-hhhhccccCCCCCCCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNV-VPIDAPDTLSIIFD-----RGLIG-MYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V-~p~d~s~~l~~a~e-----Rglig-~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
...++||.|||.|..+..|+-.-...+++ .|+ +.-++.|.+ .+-++ .+..--+.+-|-++.||+|++..|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999998886654333343 232 134555552 22111 1111011234555899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCHH----------------HHHHHHHHHHcCCCeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~~ 289 (309)
.|+.+ .++.++|.-....|+|+|.+++-|+.. .-+.+++|.+.=..++..
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 99986 578999999999999999999975421 245566666655555443
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.27 E-value=1.1e-06 Score=83.08 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC------c-----ch-hhhhccccCCCCC-CCc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L-----IG-MYHDWCESFNTYP-RTY 229 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg------l-----ig-~~~d~ce~~lpfP-~sF 229 (309)
...++|||+|||.|+++..++++ ++ ..|+.++.. .+++.+.+.- . +. ...| +...+..+ ++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D-a~~~l~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD-GIKFVAETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc-hHHHHhhCCCcc
Confidence 34679999999999999999886 33 245556665 4666665431 1 00 1122 11234445 899
Q ss_pred ceeEeccccccccccCC--HHHHHHHHhhcccCCeEEEEE
Q 021643 230 DLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 267 (309)
|+|++...-. ...... -+.++.++.|.|+|||.+++.
T Consensus 152 DvIi~D~~dp-~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDP-VGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCC-CCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999864322 211111 256889999999999999985
No 119
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.27 E-value=2.9e-06 Score=84.87 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCCCCcceeEecc--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYPRTYDLLHSSF-- 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP~sFDlVh~~~-- 236 (309)
..+|||+|||+|+++..+++.-.....|+.+|.+ ++++.+.+ .|+. . ...|..+...+++++||+|+++-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 4689999999999998888641001246677776 45555543 2431 1 12232111113458999998752
Q ss_pred ----ccccccc------cCC-------HHHHHHHHhhcccCCeEEEEEeCH----HHHHHHHHHHHc
Q 021643 237 ----LLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDTL----EMINKLKPVLHS 282 (309)
Q Consensus 237 ----v~~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~l~~~ 282 (309)
.+.+-++ ..+ -..+|.++.|+|||||.++.+... +.-..++.+++.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 2222110 011 135799999999999999987532 334455555544
No 120
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.27 E-value=1.5e-06 Score=78.27 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=65.9
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhcCcc--hhhhhccccC--CCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGLI--GMYHDWCESF--NTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eRgli--g~~~d~ce~~--lpfP-~sFDlVh~~~v~ 238 (309)
.+||+|||.|.|...++...-. .++.+++.. .....+.++|+. ..+..-+... .-++ +++|.|+..+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999873211 234444443 245556666661 1111101111 1244 999999876322
Q ss_pred c-----cccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHc
Q 021643 239 S-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS 282 (309)
Q Consensus 239 ~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~ 282 (309)
- |.+.+---..+|.++.|+|+|||.+.+. |..++.+.+.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 1 2222222357999999999999999886 555566666655544
No 121
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.25 E-value=2.4e-06 Score=80.48 Aligned_cols=91 Identities=20% Similarity=0.366 Sum_probs=68.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-hhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
+..++||+|+|-|+-...|+..- -.|.....| .|...-.+||.. -...+|-+. +..||+|.|-+++ |
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 45789999999999999997731 235555666 577777789972 223344221 3679999999988 4
Q ss_pred cCC-HHHHHHHHhhcccCCeEEEEE
Q 021643 244 RCD-IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 244 ~~~-~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+ +..+|.+|++.|+|+|.+++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 553 778999999999999999996
No 122
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.22 E-value=6.8e-06 Score=62.64 Aligned_cols=94 Identities=26% Similarity=0.390 Sum_probs=57.7
Q ss_pred EEEeCCcchHH--HHHhhcCCCEEEEecccCCc-ccHHHHHhcC-------cchhhhhccccCCCCCC--CcceeEeccc
Q 021643 170 VMDMNASYGGF--AAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LIGMYHDWCESFNTYPR--TYDLLHSSFL 237 (309)
Q Consensus 170 VLD~GCG~G~f--aa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-------lig~~~d~ce~~lpfP~--sFDlVh~~~v 237 (309)
++|+|||+|.. ...+...+..+ .++|.+ .++..+..+. ......+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYV---VGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceE---EEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999984 44444433223 335555 3444433332 11122221111266663 89999 6655
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
..++.. ....+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 554433 678999999999999999998654
No 123
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.21 E-value=5.8e-06 Score=76.25 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcc---hhh-hhccccCCC-----CC-CCc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLI---GMY-HDWCESFNT-----YP-RTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~-~d~ce~~lp-----fP-~sF 229 (309)
+.++|||+|||+|.-+.+|+.. +.. ..++.+|.. ++++.|.+ .|+. ... +|..+ .++ .+ .+|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~-~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS-ALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHHhCCCCCCC
Confidence 3578999999999866666542 110 134444544 34444433 3431 111 11111 111 23 789
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------------HHHHHHHHH----HHcCCCeee
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------EMINKLKPV----LHSLQWSTN 288 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------~~~~~i~~l----~~~l~W~~~ 288 (309)
|+|++..- ......++.++.|.|||||.+++.+.. .....++++ ...=+++..
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~ 219 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEIS 219 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEE
Confidence 99987532 234567899999999999998874310 122344443 344455554
Q ss_pred ee--cceEEEEEeC
Q 021643 289 IY--HDQFLVGKKG 300 (309)
Q Consensus 289 ~~--~e~~li~~K~ 300 (309)
+. .+.+++++|.
T Consensus 220 ~lp~gdG~~i~~k~ 233 (234)
T PLN02781 220 QISIGDGVTLCRRL 233 (234)
T ss_pred EEEeCCccEEEEEe
Confidence 44 7888888885
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=5e-06 Score=83.08 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=69.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC----CC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT----YP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp----fP-~sFDlVh 233 (309)
..+|||+|||+|+.+.+|++.--....|+++|.+ .+++.+.++ |+. . ...|. . .++ ++ ++||.|+
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-~-~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS-R-NLLELKPQWRGYFDRIL 330 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-h-hcccccccccccCCEEE
Confidence 3589999999999998887641001246677776 466555433 431 1 11221 1 122 44 8999999
Q ss_pred ec------ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHc
Q 021643 234 SS------FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 282 (309)
Q Consensus 234 ~~------~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 282 (309)
+. .++.+-++. .+ ..++|.++.|+|||||+++.++. .+..+.++..+++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 63 344332210 01 25789999999999999998763 2445666666654
No 125
>PRK01581 speE spermidine synthase; Validated
Probab=98.20 E-value=9.7e-06 Score=79.90 Aligned_cols=103 Identities=14% Similarity=0.189 Sum_probs=65.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc--------C-c----ch-hhhhccccCCCCC-CC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--------G-L----IG-MYHDWCESFNTYP-RT 228 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR--------g-l----ig-~~~d~ce~~lpfP-~s 228 (309)
...++||++|||+|+.++.+.+.+ .+..|+.+|.. .++++|.+. + + +. ...|- ..++.-. +.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da-~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA-KEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH-HHHHHhcCCC
Confidence 446799999999999998888764 12356666766 578888751 1 1 00 11221 1234444 78
Q ss_pred cceeEeccccccc--cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 229 YDLLHSSFLLSDV--TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 229 FDlVh~~~v~~~~--~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
||+|++...-..- ...---..++..+.|.|+|||.+++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999987321100 0011125689999999999999988744
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.19 E-value=5e-06 Score=83.34 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEec--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSS-- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~-- 235 (309)
..+|||+|||+|+.+..+++.---...|+++|.+ .+++.+.++ |+. . ..+|. . .. .+ ++||.|++.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da-~-~~-~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA-R-SF-SPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc-c-cc-ccCCCCCEEEEcCC
Confidence 4689999999999887777521001246677777 466555433 441 1 12221 1 12 25 889999953
Q ss_pred ----ccccccc------ccCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHc
Q 021643 236 ----FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 282 (309)
Q Consensus 236 ----~v~~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 282 (309)
..+...+ ...+ -..+|.++.|.|||||++++++. .+....++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2222111 0011 13589999999999999999873 2335556666654
No 127
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.19 E-value=7.5e-06 Score=74.68 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=85.6
Q ss_pred eEEEeCCcchHHHHHhhcC-CCEEEEecccCCcc-cH----HHHHhcCcc----hhhhhccccCC------CCC-CCcce
Q 021643 169 NVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD-TL----SIIFDRGLI----GMYHDWCESFN------TYP-RTYDL 231 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~-~l----~~a~eRgli----g~~~d~ce~~l------pfP-~sFDl 231 (309)
+||.+|||||--+++++.. +- +.-.|.|... .+ ..+.+.|+. ....|.+.... ++. ++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999998888874 31 2356777652 22 223344541 11222222111 223 79999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEE-----------eC----------------HHHHHHHHHHHHcCC
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-----------DT----------------LEMINKLKPVLHSLQ 284 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~-----------D~----------------~~~~~~i~~l~~~l~ 284 (309)
|+|..++|-. .+...+.++.+..|+|+|||.|++= +. ..-++.+..+|.+-.
T Consensus 106 i~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9999988644 3445688999999999999999992 11 123778999998877
Q ss_pred Ceeeee-----cceEEEEEe
Q 021643 285 WSTNIY-----HDQFLVGKK 299 (309)
Q Consensus 285 W~~~~~-----~e~~li~~K 299 (309)
.+.... ...+||++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 765433 789999997
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.19 E-value=2.2e-06 Score=85.81 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC-CC-CCcceeEec-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT-YP-RTYDLLHSS- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp-fP-~sFDlVh~~- 235 (309)
..+|||+|||+|+.+.+++..---...|+++|.+ ++++.+.++ |+. . ...|.. .++ +. ++||.|++.
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~--~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE--RLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh--hhhhhhhccCCEEEECC
Confidence 4689999999999988887631001246777877 566665443 441 1 122321 233 44 889999863
Q ss_pred -----cccccccc------cC-------CHHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 236 -----FLLSDVTQ------RC-------DIADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 236 -----~v~~~~~~------~~-------~~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
+.+.+-++ .. .-.++|.+..+.|||||+++.+.. .+..+.|+.++.
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 22221110 00 114679999999999999999864 233444555543
No 129
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.15 E-value=4.6e-06 Score=75.41 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=71.1
Q ss_pred hhcccchhHHHHHHHHHHh-ccC-CCCCCCCeEEEeCCcchH----HHHHhhc--C--CCEEEEecccCCc-ccHHHHHh
Q 021643 140 AFNKDTTHWYALVSDVYVG-GLA-INWSSVRNVMDMNASYGG----FAAALID--Q--PLWVMNVVPIDAP-DTLSIIFD 208 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~-~l~-i~~~~~r~VLD~GCG~G~----faa~L~~--~--~v~v~~V~p~d~s-~~l~~a~e 208 (309)
.|--+...|...... .+. .+. ...++.-+|..+||++|. .|..|.+ . ..+-..|.+.|.+ .+++.|.+
T Consensus 4 ~FFRd~~~f~~l~~~-vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDE-VLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -TTTTTTHHHHHHHH-HH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHH-HHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 455666777665543 331 221 122345789999999994 5655555 1 2234678888988 57776642
Q ss_pred cCc----------ch--------------------------hhhhccccCCCCCCCcceeEeccccccccccCCHHHHHH
Q 021643 209 RGL----------IG--------------------------MYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAV 252 (309)
Q Consensus 209 Rgl----------ig--------------------------~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~ 252 (309)
|. .. ..|+..+ ..|.++.||+|+|.+||.++.. ....+++.
T Consensus 83 -G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~ 159 (196)
T PF01739_consen 83 -GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLR 159 (196)
T ss_dssp -TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHH
T ss_pred -CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHH
Confidence 21 00 1123222 1222399999999999999864 34578999
Q ss_pred HHhhcccCCeEEEEEeCH
Q 021643 253 EMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 253 Em~RVLRPGG~lii~D~~ 270 (309)
-+++.|+|||++++-...
T Consensus 160 ~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 160 RLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHGGGEEEEEEEEE-TT-
T ss_pred HHHHHcCCCCEEEEecCc
Confidence 999999999999997543
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.13 E-value=5.2e-06 Score=87.80 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h----hhhhccccCCC-CCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G----MYHDWCESFNT-YPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g----~~~d~ce~~lp-fP~sFDlVh~~~ 236 (309)
++|||+|||+|+|+.+++..+.. .|+.+|.+ .+++.+.+. |+. . ...|.. ..+. +.++||+|+++=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~-~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL-AWLKEAREQFDLIFIDP 616 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH-HHHHHcCCCcCEEEECC
Confidence 68999999999999999987642 46777887 567666543 331 0 111211 1121 247899999861
Q ss_pred -cccc-------ccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 237 -LLSD-------VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 237 -v~~~-------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
.|.. +....+..+++....|+|+|||.+++.....-+....+.+..-.++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 1110 0001135678889999999999999876655444445556555666544
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.10 E-value=6.9e-06 Score=76.86 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhh-hhccccCCCCC-CCcceeEec--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMY-HDWCESFNTYP-RTYDLLHSS-- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~-~d~ce~~lpfP-~sFDlVh~~-- 235 (309)
..+|||+|||+|+.+..|++.--....|..+|.+ .+++.+.++ |+ +... .|. . ..+.+ +.||.|++.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~-~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-R-VFGAAVPKFDAILLDAP 149 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-H-HhhhhccCCCEEEEcCC
Confidence 3589999999999998887631000146677776 455554432 43 1112 221 1 23444 779999863
Q ss_pred ----ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 236 ----FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 236 ----~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.++.+-++. .+ -.++|.++.+.|||||+++.+..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 222221110 01 13589999999999999999854
No 132
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=1.3e-06 Score=81.21 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=73.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc---CcchhhhhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR---glig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
.-.++|+|||.|..+..|...+| -.+.-.|.| .|++-+.+- ++...+-.--|++++|. ++||+|+++..+| |
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-W 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-W 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-h
Confidence 45799999999999999999874 345566777 677776554 44333322236799999 9999999997765 4
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+ ++...+..++-+|||.|.|+-+
T Consensus 150 ~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 150 TN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hc--cCchHHHHHHHhcCCCccchhH
Confidence 43 4677899999999999999875
No 133
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.08 E-value=6.7e-06 Score=79.62 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc-cHHHHHhcC---------cc--hh-hhhccc-----cCCCCC-
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-TLSIIFDRG---------LI--GM-YHDWCE-----SFNTYP- 226 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~-~l~~a~eRg---------li--g~-~~d~ce-----~~lpfP- 226 (309)
+...++|+|||-||=+...-+.++ -.++++|..+ .++.|..|- .+ .. +..-|. ..++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 356799999999984333222221 1233444432 344443331 10 00 000011 257777
Q ss_pred CCcceeEecccccc-ccccCCHHHHHHHHhhcccCCeEEEEEe--CHHHHHHHHHHHHcCCCe
Q 021643 227 RTYDLLHSSFLLSD-VTQRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 227 ~sFDlVh~~~v~~~-~~~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~~l~W~ 286 (309)
..||+|-|.++||+ +........+|.-+.+-|||||+||-+- ...++.+++.. ...+|-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~g 256 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFG 256 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhc
Confidence 56999999999986 3333345668999999999999999884 44577777766 333443
No 134
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.07 E-value=1.8e-05 Score=69.25 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=66.6
Q ss_pred ccC-CCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccc--------cCCCCC-CC
Q 021643 159 GLA-INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCE--------SFNTYP-RT 228 (309)
Q Consensus 159 ~l~-i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce--------~~lpfP-~s 228 (309)
... ++.+...+|||+||++|||+..+.++......|.++|...+-+. ++......|..+ ..++=. +.
T Consensus 15 ~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 15 KFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred HCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccC
Confidence 344 44556689999999999999999987611122333333211000 111000011000 112212 68
Q ss_pred cceeEecccccccc--cc------CCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCeeeee-----
Q 021643 229 YDLLHSSFLLSDVT--QR------CDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY----- 290 (309)
Q Consensus 229 FDlVh~~~v~~~~~--~~------~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~----- 290 (309)
||+|+|.....--. +. .-....|.=+.+.|||||.+++.- ..+.+..++..-+..++-.-..
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s 171 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSES 171 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTC
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCc
Confidence 99999987332110 00 012233444457799999888842 2356666666555544322111
Q ss_pred cceEEEEEe
Q 021643 291 HDQFLVGKK 299 (309)
Q Consensus 291 ~e~~li~~K 299 (309)
.|..+||++
T Consensus 172 ~E~Ylv~~~ 180 (181)
T PF01728_consen 172 SEEYLVCRG 180 (181)
T ss_dssp BEEEEESEE
T ss_pred cEEEEEEcC
Confidence 566666653
No 135
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.06 E-value=0.00011 Score=66.26 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=79.8
Q ss_pred hhhccc--chhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc----ccHHHHHhc-Cc
Q 021643 139 EAFNKD--TTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDR-GL 211 (309)
Q Consensus 139 e~F~~d--~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s----~~l~~a~eR-gl 211 (309)
+.|..+ ...-|+-+..--+..|.+.+ ...++|+|||||+.+..++..+- ...+.+++.. +..+...+| |+
T Consensus 7 ~~F~~~~~~p~TK~EIRal~ls~L~~~~--g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~ 83 (187)
T COG2242 7 ELFERDEGGPMTKEEIRALTLSKLRPRP--GDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV 83 (187)
T ss_pred hhhccCCCCCCcHHHHHHHHHHhhCCCC--CCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC
Confidence 344444 33333433321234555544 45899999999999888773211 1234444543 233333333 32
Q ss_pred --chhhhhccccCC-CCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCC
Q 021643 212 --IGMYHDWCESFN-TYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQW 285 (309)
Q Consensus 212 --ig~~~d~ce~~l-pfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W 285 (309)
+.+...++-..+ .. .+||.|+.... . +++.+|.-....|||||.+++.- ..+....+-+..+.+.+
T Consensus 84 ~n~~vv~g~Ap~~L~~~-~~~daiFIGGg-~------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 84 DNLEVVEGDAPEALPDL-PSPDAIFIGGG-G------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CcEEEEeccchHhhcCC-CCCCEEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 112222111122 23 38999987755 2 36779999999999999999974 56667777777777777
No 136
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.3e-05 Score=75.27 Aligned_cols=110 Identities=17% Similarity=0.300 Sum_probs=70.6
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCCCCcceeEeccccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
+|||+|||+|-.++.|++..- -..++-+|.+ .+++.+++. ++.+ ++++ .-..+-.+.||+|+|+==||.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCccCC
Confidence 899999999999999998643 2356666776 456655432 3322 2222 1123333799999998666532
Q ss_pred cccC--CHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHHHHH
Q 021643 242 TQRC--DIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVLH 281 (309)
Q Consensus 242 ~~~~--~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~~ 281 (309)
.+-. --++++.+..+-|++||.+.|--+ ..+-.+++++-.
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 2110 124789999999999998777544 445566666544
No 137
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.04 E-value=1e-05 Score=78.46 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=59.1
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCC-CC
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYP-RT 228 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP-~s 228 (309)
+.+.+.. ..+|||+|||+|.+++.+++.....-.|+.+|.+ ++++.+.+ .|+. . ...|.. ..+.+ ..
T Consensus 74 ~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~--~~~~~~~~ 149 (322)
T PRK13943 74 EWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY--YGVPEFAP 149 (322)
T ss_pred HhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh--hcccccCC
Confidence 3444443 3589999999999999988632100124555665 46665554 2431 1 122211 12333 78
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
||+|++...+.+ +...+.|.|||||.+++..
T Consensus 150 fD~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDE---------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHH---------hHHHHHHhcCCCCEEEEEe
Confidence 999998754432 3345678999999988853
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.04 E-value=8.5e-06 Score=76.40 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=62.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----chh-hhhccccCCCC-CCCcce
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGM-YHDWCESFNTY-PRTYDL 231 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l----ig~-~~d~ce~~lpf-P~sFDl 231 (309)
.+.++|||+|||+|+++..+.+... +..++.+|.. ++++.+.+.- + +.. ..|. ...+.. +++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~-~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG-FKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch-HHHHHhCCCCccE
Confidence 3456999999999999988877641 2345555555 4556555431 0 000 1111 112222 489999
Q ss_pred eEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D 268 (309)
|++..... ...... ...++..+.|+|+|||.+++..
T Consensus 149 Ii~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99875422 111112 3578899999999999999863
No 139
>PHA03411 putative methyltransferase; Provisional
Probab=98.01 E-value=9.6e-06 Score=77.15 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-c-hhhhhccccCCCC-C-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-I-GMYHDWCESFNTY-P-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-i-g~~~d~ce~~lpf-P-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..++.+.. ...|+.+|.+ .+++.+.++-. + -...| ...+ . ++||+|+++--|.|.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D----~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSD----VFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECc----hhhhcccCCCcEEEEcCCcccc
Confidence 35899999999999888866421 1356777777 68888876521 1 11122 2222 3 789999998777664
Q ss_pred ccc--CC---------------HHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQR--CD---------------IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~--~~---------------~~~~L~Em~RVLRPGG~lii~ 267 (309)
... .+ +.+.+....++|+|+|.+++.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 311 01 357889999999999987665
No 140
>PRK03612 spermidine synthase; Provisional
Probab=98.01 E-value=2.1e-05 Score=80.55 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-c------------ch-hhhhccccCCC-CCCCc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L------------IG-MYHDWCESFNT-YPRTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-l------------ig-~~~d~ce~~lp-fP~sF 229 (309)
+.++|||+|||+|..+..+.+++. +..++.+|.. ++++.+++.. + +. ...| ....+. .+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D-a~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD-AFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh-HHHHHHhCCCCC
Confidence 457899999999999999887642 2345666665 5777777621 1 00 1112 111233 24899
Q ss_pred ceeEeccccccccc--cCCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCee
Q 021643 230 DLLHSSFLLSDVTQ--RCDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 230 DlVh~~~v~~~~~~--~~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~ 287 (309)
|+|+++......+. .---++++.++.|.|||||.+++.. ..+...++.+.+++....+
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 99999743221110 0012458899999999999999853 2444555556566654543
No 141
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.00 E-value=2.1e-05 Score=72.76 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=67.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc-Ccc--------------hhhhhccccCCCCC-----
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-GLI--------------GMYHDWCESFNTYP----- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR-gli--------------g~~~d~ce~~lpfP----- 226 (309)
.+||+.|||.|.=+.+|+++|. +|+++|.| ..++.++++ ++. +.+.-+|..+..++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 5899999999999999999985 46677777 355554442 110 01111122233332
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+.||+|.=..+|.+++. ....++..-|.++|||||.+++.
T Consensus 122 ~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999999999999864 44678999999999999987664
No 142
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.97 E-value=1.6e-05 Score=71.84 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=72.9
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHH----HHHhcCcch----hhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLS----IIFDRGLIG----MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~----~a~eRglig----~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+|||.|++...|++.+... .++++|.+ .++. +|..+|+.. ...|... ..|- +.||+|+=-..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~--~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD--PDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC--CcccccceeEEeecCce
Confidence 89999999999999999987532 37888888 3443 344455521 1223211 1343 888888754433
Q ss_pred cc-----ccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCC
Q 021643 239 SD-----VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ 284 (309)
Q Consensus 239 ~~-----~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~ 284 (309)
-. -.....+.-++--+.++|+|||+|+|+...-..+++.+....-.
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 21 11112234578889999999999999987766666655554443
No 143
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.96 E-value=3.1e-05 Score=71.68 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc----h--h--hhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI----G--M--YHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli----g--~--~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||||+|+..|+++++ -.|.++|.+ +|+.....+..- + . +.+|.+ .+.. ..||+++++.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~--~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD--IFPDFATFDVSFISL 151 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH--cCCCceeeeEEEeeh
Confidence 46899999999999999999864 346777887 466553333210 0 1 112211 2223 4667666553
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEE-------------------e---CHHHHHHHHHHHHcCCCeee
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-------------------D---TLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------D---~~~~~~~i~~l~~~l~W~~~ 288 (309)
.. +|..+.+.|+| |.+++- | ....++++...+....|+..
T Consensus 152 ~~-----------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 152 IS-----------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred Hh-----------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 22 57788888888 776653 2 12356777777777777653
No 144
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.96 E-value=1.1e-05 Score=77.10 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=79.0
Q ss_pred chhhhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchH----HHHHhhcC-CC--EEEEecccCCc-ccHHHHHh
Q 021643 137 SEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ-PL--WVMNVVPIDAP-DTLSIIFD 208 (309)
Q Consensus 137 ~~e~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~----faa~L~~~-~v--~v~~V~p~d~s-~~l~~a~e 208 (309)
....|=-|...|..... .+.. ..+.-+|...||.||. .|..|.+. +. .-..|.+.|.+ ++++.|.+
T Consensus 92 neT~FFRd~~~f~~L~~--~~~~----~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 92 NLTAFFREAHHFPILAE--HARR----RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CCCCccCCcHHHHHHHH--HHHh----cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 33456667777765543 2211 1123589999999994 55555552 11 12468888887 56666543
Q ss_pred c--------Cc-------------------------c-----hhhhhccccCCCCC--CCcceeEeccccccccccCCHH
Q 021643 209 R--------GL-------------------------I-----GMYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIA 248 (309)
Q Consensus 209 R--------gl-------------------------i-----g~~~d~ce~~lpfP--~sFDlVh~~~v~~~~~~~~~~~ 248 (309)
- ++ + -..|+.. ..+|| +.||+|+|.++|.|+.. ....
T Consensus 166 G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~--~~~~~~~~~fD~I~cRNvliyF~~-~~~~ 242 (287)
T PRK10611 166 GIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLL--AKQWAVPGPFDAIFCRNVMIYFDK-TTQE 242 (287)
T ss_pred CCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCC--CCCCccCCCcceeeHhhHHhcCCH-HHHH
Confidence 1 10 0 0112221 12454 89999999999999853 4567
Q ss_pred HHHHHHhhcccCCeEEEEEeC
Q 021643 249 DVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 249 ~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++..+.+.|+|||++++-..
T Consensus 243 ~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHHHHhCCCcEEEEeCc
Confidence 899999999999999887653
No 145
>PLN02366 spermidine synthase
Probab=97.95 E-value=1.6e-05 Score=76.53 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------Cc----ch-hhhhccccCC-CCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IG-MYHDWCESFN-TYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------gl----ig-~~~d~ce~~l-pfP-~sFD 230 (309)
.+.++|||+|||.|+++..+++.+ .+..|+-++.. .+++.+++. ++ +. ...| +...+ ..+ +.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D-a~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD-GVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh-HHHHHhhccCCCCC
Confidence 346799999999999999998864 12334444444 355555443 11 00 1112 10111 234 7899
Q ss_pred eeEecccccccccc-CCHHHHHHHHhhcccCCeEEEEE
Q 021643 231 LLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 231 lVh~~~v~~~~~~~-~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|++...-.+-+.. ---..++..+.|.|+|||.+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99986432211100 01246899999999999999873
No 146
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.94 E-value=7.9e-06 Score=74.57 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=54.7
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC--C-CEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCC
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ--P-LWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT 224 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~--~-v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lp 224 (309)
.++.+.+.++ .+|||+|||+|.+++.|+.. . ..|.+ ++.. ...+.|.++ |+ .-..+| ....
T Consensus 64 ~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~---vE~~~~l~~~A~~~l~~~~~~nv~~~~gd---g~~g 135 (209)
T PF01135_consen 64 MLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVS---VERDPELAERARRNLARLGIDNVEVVVGD---GSEG 135 (209)
T ss_dssp HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEE---EESBHHHHHHHHHHHHHHTTHSEEEEES----GGGT
T ss_pred HHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEE---ECccHHHHHHHHHHHHHhccCceeEEEcc---hhhc
Confidence 3444555554 58999999999999988863 2 22333 3333 233444333 33 112223 2345
Q ss_pred CC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 225 YP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 225 fP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+| ..||.||+.......+ .++.+-|||||++++--
T Consensus 136 ~~~~apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TGGG-SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEE
Confidence 55 7899999987775332 33556699999999843
No 147
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.88 E-value=2.1e-05 Score=77.54 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=62.7
Q ss_pred eEEEeCCcchHHHHHhhcC---CCEEEEecccCCcccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 169 NVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAPDTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
.++|+|||+|+...++... ++...+..+......-......++ .-+.++. ...||+ ++||.+-+..+..|
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~--~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF--GKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh--hcCCCCccccCcEEEEeeccc
Confidence 7899999999998888763 222222222211110111111111 1133332 258999 99999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.++ ...++.|++||++|||+++.-+
T Consensus 191 ~~~---~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 191 APD---LEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred CCc---HHHHHHHHhcccCCCceEEeHH
Confidence 874 7889999999999999999853
No 148
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=6.1e-06 Score=78.47 Aligned_cols=93 Identities=23% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-chhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
...++|+|||.|- ++...+. ..+.+.|.+ ..+..+...|- .-...|. ..+||+ .+||.+.+..++||+..
T Consensus 46 gsv~~d~gCGngk---y~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad~--l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGK---YLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRADA--LKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCcc---cCcCCCc--ceeeecchhhhhccccccCCCceeehhhh--hcCCCCCCccccchhhhhhhhhhh
Confidence 3579999999986 3333331 134556666 34555555554 2222231 268999 99999999999999988
Q ss_pred cCCHHHHHHHHhhcccCCeEEEE
Q 021643 244 RCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++.-+.++.|+-|+|||||...|
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEE
Confidence 88788999999999999998555
No 149
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.87 E-value=2e-05 Score=68.39 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=57.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++++. .++++|.+ .+++.+.++. +.-...|.. ..+++ ..||.|+++--++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~--~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL--KFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchh--cCCccccCCCEEEECCCcc
Confidence 35899999999999999998743 45666666 4666665542 111222321 35667 6799998874443
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.. ...+..++.+. -+.++|.+++...
T Consensus 89 -~~-~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 89 -IS-TPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred -cH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence 21 12233444332 2568888888643
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.83 E-value=4.9e-05 Score=76.14 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhccc--cCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCE--SFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce--~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++... .|.++|.+ .+++.|.+. |+. -...|+.+ ...+++ ++||+|+++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 35899999999999999998753 56677777 577766643 331 11122211 124566 789999765
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~ 287 (309)
+.+.++...+..+.+ ++|++.++++=.+. .-..++.+.+ -.|++
T Consensus 375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l 419 (443)
T PRK13168 375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRL 419 (443)
T ss_pred ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEE
Confidence 223344556666655 69999999995554 3334555532 23554
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.81 E-value=2.8e-05 Score=72.01 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCC--EEEEecccCCc--ccHHHHHhcCc-c-hhhhhccccCCC--CC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAP--DTLSIIFDRGL-I-GMYHDWCESFNT--YP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v--~v~~V~p~d~s--~~l~~a~eRgl-i-g~~~d~ce~~lp--fP-~sFDlVh~~~v~ 238 (309)
..+|+||||.|.|...++.++- ..++|...... ..+..+.+.|+ . .++..-+...+. +| +|.|-|+.++-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 3799999999999999998532 22233332222 46777888887 2 222211222232 34 599999876222
Q ss_pred c-----cccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHH-HHHHH
Q 021643 239 S-----DVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINK-LKPVL 280 (309)
Q Consensus 239 ~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~-i~~l~ 280 (309)
- |.+.+---..+|.++.|+|+|||.+.+..+ .++.+. +...+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 1 222221235689999999999999998754 444444 44444
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=97.80 E-value=4.5e-05 Score=71.21 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=58.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-C-CEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCCCCcceeEeccccccc-
Q 021643 168 RNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSFLLSDV- 241 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~-v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP~sFDlVh~~~v~~~~- 241 (309)
.+|||+|||+|.++.+++.+ . .....|..+|.. .+++.|.+... +. ...|.. ..+++.+||+|+++==|...
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~--~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADAL--TTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchh--cccccCCccEEEECCCCCCcc
Confidence 58999999999999988753 1 011357777776 57777775432 11 112211 12234799999998222111
Q ss_pred -cc------cCC-HHHHHHHHhhcccCCeEEEE
Q 021643 242 -TQ------RCD-IADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 242 -~~------~~~-~~~~L~Em~RVLRPGG~lii 266 (309)
.+ ... ...++....|.++||+. |+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 11 111 44588888998888886 44
No 153
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.77 E-value=8.3e-05 Score=76.06 Aligned_cols=114 Identities=9% Similarity=0.104 Sum_probs=69.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhcCcch--hh-hhccccCCCCC-CCcceeEecc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGLIG--MY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eRglig--~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
....+||+|||.|.|...++...-. .++.+++.. ..+..+.++|+.. .+ .+...-..-|| +++|-|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3578999999999999999975311 133333333 3555666666521 11 11100112378 9999998763
Q ss_pred ccc-----cccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHH
Q 021643 237 LLS-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVL 280 (309)
Q Consensus 237 v~~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~ 280 (309)
-=- |.+.+---..+|.++.|+|||||.+.+. |..++.+.+....
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~ 475 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELI 475 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 222 2222222357999999999999988876 5555555544443
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.71 E-value=0.00015 Score=72.06 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=68.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h---h-hhhccccCC-CC--C-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G---M-YHDWCESFN-TY--P-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g---~-~~d~ce~~l-pf--P-~sFDlV 232 (309)
..+|||+|||+|+|+.+.+..+. ..|+.+|.+ .+++.+.+. |+. . . ..|..+ .+ .+ . ++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~-~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK-LLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH-HHHHHHhcCCCCCEE
Confidence 36899999999999877555442 245667776 466555432 331 0 1 112111 11 12 2 589999
Q ss_pred Eeccc-ccccc-----ccCCHHHHHHHHhhcccCCeEEEEEeC------HHHHHHHHHHHHcCCCeeee
Q 021643 233 HSSFL-LSDVT-----QRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 233 h~~~v-~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~~~~ 289 (309)
+++== |..-. ...+..+++.-..++|+|||.++.... .+..+.+.+-+..-.-+.++
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 98711 11000 001345566678899999999998543 33556666666555554443
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.68 E-value=0.00021 Score=65.05 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c-cHHHHHhcCcch---hh-hhccccCCC-----C-CCCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D-TLSIIFDRGLIG---MY-HDWCESFNT-----Y-PRTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~-~l~~a~eRglig---~~-~d~ce~~lp-----f-P~sFD 230 (309)
+.++||++|+++|..+.+|+.. +..+..+...... + +.+....-|+.. .. .+..+ .++ . +++||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~-~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE-VLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH-HHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh-hHHHHHhccCCCcee
Confidence 4579999999999999888852 3444444432221 1 223334445411 11 11111 111 2 36899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH----------------HHHHHHHHHHHcCCCeeeee--cc
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTNIY--HD 292 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~~~--~e 292 (309)
+|+...- ..+...++..+.+.|||||.+++.+.. .+.+-.+.+.+.=+.++.+. .+
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 9987642 234567888899999999999997521 12223334445556666555 78
Q ss_pred eEEEEEeC
Q 021643 293 QFLVGKKG 300 (309)
Q Consensus 293 ~~li~~K~ 300 (309)
.+++++|+
T Consensus 198 Gl~l~~K~ 205 (205)
T PF01596_consen 198 GLTLARKR 205 (205)
T ss_dssp EEEEEEE-
T ss_pred eeEEEEEC
Confidence 89999984
No 156
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.68 E-value=7.6e-05 Score=68.48 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=81.3
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh-cCcc------hhh--------hhcc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-RGLI------GMY--------HDWC 219 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e-Rgli------g~~--------~d~c 219 (309)
|++.++.. ...+||+-|||.|.-+.+|+++|. +|+++|.+ ..++.+++ +++. +.+ .-+|
T Consensus 29 ~~~~l~~~--~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 29 YLDSLALK--PGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHTTS--TSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHhcCCC--CCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 55554332 235899999999999999999984 67888888 46766643 4431 100 0122
Q ss_pred ccCCCCC----CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEE--EEEeCH----------HHHHHHHHHHHcC
Q 021643 220 ESFNTYP----RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV--LVQDTL----------EMINKLKPVLHSL 283 (309)
Q Consensus 220 e~~lpfP----~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~l--ii~D~~----------~~~~~i~~l~~~l 283 (309)
..+..++ +.||+|+=..+|.-++ ...-.++..-|.++|||||.+ +..+.. -..++|+++.. -
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~ 181 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-P 181 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-T
T ss_pred cccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-C
Confidence 2344433 5699999888887775 356789999999999999993 332210 13566777776 5
Q ss_pred CCeee
Q 021643 284 QWSTN 288 (309)
Q Consensus 284 ~W~~~ 288 (309)
.|++.
T Consensus 182 ~f~i~ 186 (218)
T PF05724_consen 182 GFEIE 186 (218)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 66654
No 157
>PLN02476 O-methyltransferase
Probab=97.66 E-value=0.00052 Score=65.40 Aligned_cols=126 Identities=14% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHH----HHhcCcc-------hhhhhccccC--CCCCCC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSI----IFDRGLI-------GMYHDWCESF--NTYPRT 228 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~----a~eRgli-------g~~~d~ce~~--lpfP~s 228 (309)
+.++||++|+|+|..+.+++.. +.. |+.++.. +..++ ..+-|+. |...+.-... ....++
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3579999999999999888762 222 3333333 23333 3334541 2221110000 011368
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHH----HHHcCCCeeeee--
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKP----VLHSLQWSTNIY-- 290 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~----l~~~l~W~~~~~-- 290 (309)
||+|+... +..+...++....+.|||||.+++.+-. .-...+++ +.+.=+++..+.
T Consensus 195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 99997652 2335677899999999999999886320 11123333 445556776655
Q ss_pred cceEEEEEeC
Q 021643 291 HDQFLVGKKG 300 (309)
Q Consensus 291 ~e~~li~~K~ 300 (309)
.+.+++++|.
T Consensus 269 gDGl~i~~K~ 278 (278)
T PLN02476 269 GDGMTICRKR 278 (278)
T ss_pred CCeeEEEEEC
Confidence 6888888874
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.60 E-value=0.00025 Score=70.64 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--ch-hhhhccc--cCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IG-MYHDWCE--SFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig-~~~d~ce--~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++... .|+++|.+ ++++.|.+ .|+ +. ...|..+ ...++. ++||+|+.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 35899999999999999987643 35566665 46655554 233 11 1122211 012344 689999864
Q ss_pred cccccccccCC-HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee
Q 021643 236 FLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~v~~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 287 (309)
- .+.+ ...++.++.+ |+|+|.++++-+...+.+--+++..-.|+.
T Consensus 370 P------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 370 P------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI 415 (431)
T ss_pred c------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence 2 1222 3456666665 899999999877666555444444445654
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00018 Score=66.45 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=77.6
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHH----hcCcc---hhh--hhccccCCCCC-CCcceeE
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIF----DRGLI---GMY--HDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~----eRgli---g~~--~d~ce~~lpfP-~sFDlVh 233 (309)
+.++||.+|.+.|..+..|+.. +--. .++-++.. ++.+.|+ +-|+. ..+ .|.-+...-.. ++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4679999999999988888752 2000 23444443 3444443 33441 111 23333222244 9999997
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC--------------HHHHHHHHHHHHcCCC----eeeee--cce
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--------------LEMINKLKPVLHSLQW----STNIY--HDQ 293 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--------------~~~~~~i~~l~~~l~W----~~~~~--~e~ 293 (309)
... ++.+..+++.+.-+.|||||.+++.+- .....+++....-+.+ +.... .+.
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDG 211 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDG 211 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCc
Confidence 653 233456799999999999999998641 1344445555554444 44444 488
Q ss_pred EEEEEeC
Q 021643 294 FLVGKKG 300 (309)
Q Consensus 294 ~li~~K~ 300 (309)
++++.|.
T Consensus 212 l~v~~k~ 218 (219)
T COG4122 212 LLLSRKR 218 (219)
T ss_pred eEEEeec
Confidence 9999885
No 160
>PLN02672 methionine S-methyltransferase
Probab=97.57 E-value=0.00026 Score=78.15 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=72.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc------------------ch-hhhhccccCC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL------------------IG-MYHDWCESFN 223 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl------------------ig-~~~d~ce~~l 223 (309)
.+|||+|||+|..+..|+.+.-. ..++++|.+ ++++.|.+. ++ +. ...|+. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~---~ 195 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL---G 195 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh---h
Confidence 47999999999999999874211 246677777 566655322 11 01 122332 2
Q ss_pred CCC---CCcceeEec--cccc------------ccc--------c----------cCC---HHHHHHHHhhcccCCeEEE
Q 021643 224 TYP---RTYDLLHSS--FLLS------------DVT--------Q----------RCD---IADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 224 pfP---~sFDlVh~~--~v~~------------~~~--------~----------~~~---~~~~L~Em~RVLRPGG~li 265 (309)
+++ ..||+|+++ ++-. |.+ + ..+ ..+++.+..++|||||+++
T Consensus 196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 233 269999987 2111 100 0 111 3678999999999999999
Q ss_pred EEeCHHHHHHHH-HHHHcCCCee
Q 021643 266 VQDTLEMINKLK-PVLHSLQWST 287 (309)
Q Consensus 266 i~D~~~~~~~i~-~l~~~l~W~~ 287 (309)
+--..+.-+.+. ++..+..|+.
T Consensus 276 lEiG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 276 FNMGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred EEECccHHHHHHHHHHHHCCCCe
Confidence 987666666777 5777666653
No 161
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.57 E-value=0.00057 Score=61.33 Aligned_cols=135 Identities=18% Similarity=0.259 Sum_probs=73.7
Q ss_pred cchhHHHHHHHHHHhccC-CCCCCCCeEEEeCCcchH--HHHHhhcCCCEEEEecccCCc-ccH-HHHHhcCc--chhhh
Q 021643 144 DTTHWYALVSDVYVGGLA-INWSSVRNVMDMNASYGG--FAAALIDQPLWVMNVVPIDAP-DTL-SIIFDRGL--IGMYH 216 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~-i~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~~V~p~d~s-~~l-~~a~eRgl--ig~~~ 216 (309)
..+.|.+++.+.-. .+. +... ..+++|+|+|-|- .-.++......+.=+.+..-. .-+ .++.+=|| +.+++
T Consensus 27 ~~~~~~~Hi~DSL~-~~~~~~~~-~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~ 104 (184)
T PF02527_consen 27 PEEIWERHILDSLA-LLPFLPDF-GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVIN 104 (184)
T ss_dssp HHHHHHHHHHHHHG-GGGCS-CC-CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEE
T ss_pred HHHHHHHHHHHHHH-hhhhhccC-CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 34667666654211 111 2222 2279999999883 333333333332223232111 223 33444466 33555
Q ss_pred hccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH---HHHHHHHHHHHcCCCeee
Q 021643 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 217 d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~~~~~i~~l~~~l~W~~~ 288 (309)
.-.|. ..++.+||+|.|.-+- .+..++.-+.+.|+|||.+++---. +.+++.++-.+.+.++..
T Consensus 105 ~R~E~-~~~~~~fd~v~aRAv~-------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARAVA-------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEESSS-------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred eeecc-cccCCCccEEEeehhc-------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 55554 3445999999987543 2566888889999999999887543 445555555566666543
No 162
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.48 E-value=0.00021 Score=68.51 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=62.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..|++++. .|.++|.+ .+++.+.+ .|+. . ...|. +...+-+ +.||+|+++
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~-~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDS-TQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH-HHHHHhcCCCCeEEEEC---
Confidence 6899999999999999998753 46667776 56665543 3431 1 11121 1112213 679999876
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHH
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPV 279 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l 279 (309)
+++.++...+.++-.-++|++.++++-.... ...++.+
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 3344444445555566889999999865553 3334444
No 163
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.48 E-value=0.00021 Score=67.70 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCCeEEEeCCcch----HHHHHhhcCCC----EEEEecccCCc-ccHHHHH----h-----cCcc-------------h-
Q 021643 166 SVRNVMDMNASYG----GFAAALIDQPL----WVMNVVPIDAP-DTLSIIF----D-----RGLI-------------G- 213 (309)
Q Consensus 166 ~~r~VLD~GCG~G----~faa~L~~~~v----~v~~V~p~d~s-~~l~~a~----e-----Rgli-------------g- 213 (309)
+.-+|.-+||+|| +.|..|.+... +.+.|.+.|.+ ..|+.|. . +|+. +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3567999999999 46666666432 35678888887 4565543 1 3321 1
Q ss_pred -------------hhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 214 -------------MYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 214 -------------~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
..|+-- ...++++-||+|+|.+|+.++.. ..-.+++..++..|+|||++++-.+..
T Consensus 176 y~v~~~ir~~V~F~~~NLl-~~~~~~~~fD~IfCRNVLIYFd~-~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLL-DDSPFLGKFDLIFCRNVLIYFDE-ETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCC-CCccccCCCCEEEEcceEEeeCH-HHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 112211 12236699999999999998753 345789999999999999999965543
No 164
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00047 Score=64.55 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=78.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC-EEEEecccCCcccHHHH----HhcCc----ch-hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAPDTLSII----FDRGL----IG-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p~d~s~~l~~a----~eRgl----ig-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
-.+|||.+.|.|.+|..-.+++. .|..|.-. . +.|+.| ..|++ +. .++|..+.--.|+ .|||+|+-.
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd-p-~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKD-P-NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeC-C-CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 46899999999999999888876 55443211 1 111111 12222 11 2233223345688 899998642
Q ss_pred -cccccccccCCHHHHHHHHhhcccCCeEEEEEe--------CHHHHHHHHHHHHcCCCeeeee-cceE-EEEEeC
Q 021643 236 -FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD--------TLEMINKLKPVLHSLQWSTNIY-HDQF-LVGKKG 300 (309)
Q Consensus 236 -~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D--------~~~~~~~i~~l~~~l~W~~~~~-~e~~-li~~K~ 300 (309)
==|++-. .---+.+-.|++|||||||.++--. -.+....+.+.+++..+.+... .+.. ++++|+
T Consensus 213 PPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~k~ 287 (287)
T COG2521 213 PPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALGVVAVKP 287 (287)
T ss_pred CCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccceEEecC
Confidence 1122111 0113678999999999999877532 1356778888888888884433 4444 667764
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.41 E-value=0.00023 Score=62.66 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcc---cHHHHHhcCc-------chhhhhccccC--CCCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD---TLSIIFDRGL-------IGMYHDWCESF--NTYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~---~l~~a~eRgl-------ig~~~d~ce~~--lpfP-~sFD 230 (309)
.+..+||++|||+|-.+..++.. +. ..|+-.|.++ .++...++.. .....+|.+.. .... +.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCC--ceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34579999999999666666554 21 1233344432 2222222211 12334675421 1123 7899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+++.|+..- ...+.++.=+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999743 3467788889999999999887643
No 166
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0013 Score=61.83 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=67.3
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCCCC
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRT 228 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP~s 228 (309)
.+++.++ .+|||.|.|+|.++++|+.. +-+ -.|...+.. +..+.|.+. |+.. ...|.++ .-++..
T Consensus 89 ~~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~-G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~--~~~~~~ 163 (256)
T COG2519 89 RLGISPG--SRVLEAGTGSGALTAYLARAVGPE-GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE--GIDEED 163 (256)
T ss_pred HcCCCCC--CEEEEcccCchHHHHHHHHhhCCC-ceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc--cccccc
Confidence 4556554 58999999999999999951 111 123333333 334444332 4421 1234433 334479
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCC
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQW 285 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W 285 (309)
||.|+.. ++ ++.++|.-++.+|+|||.+++-- ..+.+++.-.-++..+|
T Consensus 164 vDav~LD-----mp---~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 164 VDAVFLD-----LP---DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cCEEEEc-----CC---ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 9998653 33 46779999999999999888753 34434443333333344
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.00042 Score=65.09 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=35.5
Q ss_pred CCCCC-CCcceeEecccc--cccc-ccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 222 FNTYP-RTYDLLHSSFLL--SDVT-QRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 222 ~lpfP-~sFDlVh~~~v~--~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++-+- +-||+|.|-.+- .|+. .+.++..++.-+.|.|+|||++|+--+
T Consensus 159 fl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 159 FLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred hhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 34455 789999985432 2332 335699999999999999999999643
No 168
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.39 E-value=0.0015 Score=62.53 Aligned_cols=121 Identities=21% Similarity=0.376 Sum_probs=73.1
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---ch
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IG 213 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---ig 213 (309)
-+++.|...|.+ -+++.. ......+||+|||+|-.+..|+.. + . ..++++|.+ .++..|.+. ++ ++
T Consensus 128 pETEE~V~~Vid-~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 128 PETEEWVEAVID-ALNNSE--HSKHTHILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred ccHHHHHHHHHH-HHhhhh--hcccceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 356778888876 333321 122237999999999998888763 2 1 135566666 344444433 22 44
Q ss_pred hhhhcc--ccCCCCC---CCcceeEec--cccc------------ccc-------cc--CCHHHHHHHHhhcccCCeEEE
Q 021643 214 MYHDWC--ESFNTYP---RTYDLLHSS--FLLS------------DVT-------QR--CDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 214 ~~~d~c--e~~lpfP---~sFDlVh~~--~v~~------------~~~-------~~--~~~~~~L~Em~RVLRPGG~li 265 (309)
+.|..- +...|+| +.+|+++|+ ++.+ |.+ .. ..+..++.=.-|.|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 443311 2345665 999999987 3332 110 00 114456777889999999999
Q ss_pred EEe
Q 021643 266 VQD 268 (309)
Q Consensus 266 i~D 268 (309)
+.-
T Consensus 283 le~ 285 (328)
T KOG2904|consen 283 LEL 285 (328)
T ss_pred EEe
Confidence 974
No 169
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00056 Score=62.72 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=61.1
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc--chhhhhccccCCCCC--C
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL--IGMYHDWCESFNTYP--R 227 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl--ig~~~d~ce~~lpfP--~ 227 (309)
.++.|.++++ .+||++|||+|..+|-|++..-.|.+|.-.. ...+.|.++ |+ +.+.+. ....-|| .
T Consensus 64 m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V~siEr~~--~L~~~A~~~L~~lg~~nV~v~~g--DG~~G~~~~a 137 (209)
T COG2518 64 MLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIE--ELAEQARRNLETLGYENVTVRHG--DGSKGWPEEA 137 (209)
T ss_pred HHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeEEEEEEcH--HHHHHHHHHHHHcCCCceEEEEC--CcccCCCCCC
Confidence 3444555544 6899999999999999988543443332221 122333322 33 222221 1346677 8
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.||.|+.......++. .| .+-|||||.+++-.-
T Consensus 138 PyD~I~Vtaaa~~vP~------~L---l~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE------AL---LDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH------HH---HHhcccCCEEEEEEc
Confidence 9999999888876552 23 346999999998543
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.34 E-value=0.00049 Score=69.56 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=66.4
Q ss_pred CchhhhcccchhHHHHHHH--HHHhccCCCCC----CCCeEEEeCCcchHHHHHhhcC------CCEEEEecccCCc-cc
Q 021643 136 DSEEAFNKDTTHWYALVSD--VYVGGLAINWS----SVRNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DT 202 (309)
Q Consensus 136 ~~~e~F~~d~~~W~~~v~~--~y~~~l~i~~~----~~r~VLD~GCG~G~faa~L~~~------~v~v~~V~p~d~s-~~ 202 (309)
.+-|.|+.|.-.-...-.. ..+.... ... +...|||+|||+|-++..-++. .+.|..|...... .+
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~-~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRV-RKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHH-TTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhh-hhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 4567899888766543321 1222111 111 2357999999999886443322 2344444433222 23
Q ss_pred HH-HHHhcCc---chhhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 203 LS-IIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 203 l~-~a~eRgl---ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
++ .+.+.|. +.+++.-.+ ....|...|+|++-.+=+ +-+.+-+...|.-.+|.|||||.+|
T Consensus 230 l~~~v~~n~w~~~V~vi~~d~r-~v~lpekvDIIVSElLGs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 230 LQKRVNANGWGDKVTVIHGDMR-EVELPEKVDIIVSELLGS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHTTTTTTEEEEES-TT-TSCHSS-EEEEEE---BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHhcCCCCeEEEEeCccc-CCCCCCceeEEEEeccCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 2244454 333332111 344467999999864333 3344456778999999999999865
No 171
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.27 E-value=0.00028 Score=68.86 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=61.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc----cHHHHHhcCc---chhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD----TLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~----~l~~a~eRgl---ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
-+.|||+|||||-++..-++.|. ..|.+++.++ ..+++.+.|+ +.++..--| ..-.| ...|+|++-..=
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvE-di~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVE-DIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceE-EEecCccceeEEeehhhh
Confidence 46899999999998887777663 2344555553 4556666676 222222122 13445 999999986322
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
..+-....+..+|.-=+|=|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2211112355678888999999998653
No 172
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=7.2e-05 Score=65.98 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=40.3
Q ss_pred CCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 222 FNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 222 ~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.++|. +|.|+|.|.++++|+.-+ +-..++.|.+|+|||||++-|+
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 58898 999999999999998753 4578999999999999999997
No 173
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.20 E-value=0.0011 Score=65.37 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=63.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||++||+|.|+..++.++. .|+++|.+ .+++.+.+. |+ +. ...|. +..++-. +.||+|+.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEEC---
Confidence 5899999999999999997653 45566665 455555432 32 11 11111 1122212 569999876
Q ss_pred ccccccCCH-HHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCeee
Q 021643 239 SDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTN 288 (309)
Q Consensus 239 ~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~ 288 (309)
+++.++ ..++..+. -++|++.++++-.... ...++.+ -.|+..
T Consensus 308 ---PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 308 ---PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ---CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 233332 34444443 4899999999977664 3445555 246544
No 174
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.15 E-value=0.0017 Score=61.70 Aligned_cols=118 Identities=17% Similarity=0.290 Sum_probs=75.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccH---HHHHhc----C----------------------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---SIIFDR----G---------------------------- 210 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l---~~a~eR----g---------------------------- 210 (309)
.-+||==|||.|.++-.++.+|..+ .+.+.| -|+ .+++.. +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~---~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAV---QGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceE---EEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999987643 333333 221 222221 0
Q ss_pred ------------cchhhhhccccCCCC--CCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE--------e
Q 021643 211 ------------LIGMYHDWCESFNTY--PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ--------D 268 (309)
Q Consensus 211 ------------lig~~~d~ce~~lpf--P~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~--------D 268 (309)
+.-..+|+++-..+- -++||.|.+.+++--. .++.++|..|.++|||||++|=. +
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 011223333321111 1599998887544322 35889999999999999976642 2
Q ss_pred C-------HH-HHHHHHHHHHcCCCeeeee
Q 021643 269 T-------LE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 269 ~-------~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
. .+ ..++|..+++++.|+...+
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2 22 4899999999999987654
No 175
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.15 E-value=0.0033 Score=59.45 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh--cCcchhh-----hhccccCCCCCCCcceeEec
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD--RGLIGMY-----HDWCESFNTYPRTYDLLHSS 235 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e--Rglig~~-----~d~ce~~lpfP~sFDlVh~~ 235 (309)
...++|||+|||+|...-+..+. + ....+..+|.+ .|++++.. +...... ...-....+++ ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP-PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC-CCcEEEEe
Confidence 34578999999999766555441 2 23456777877 46655432 1111100 00001123333 33999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~ 289 (309)
++|..+.+ ....+++..+.+-+.+ ++||.|. -+.+.++++.+....+.+.+
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 99998887 6677888888887766 8888875 34678888887655555444
No 176
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.11 E-value=0.00097 Score=65.17 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=65.6
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCCCCcceeEeccccccccccC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~ 245 (309)
.....+|+|.|.|..+..+..+--+ +..+..|.+..++.+..-+ .|+-|-.+.-+-.-| .=|+|+...+++||.| .
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD-e 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD-E 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCCh-H
Confidence 4678999999999999888873212 2333344442222222211 222222122222234 3359999999999986 5
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+..++|.-++.-|+|||.+++-|.
T Consensus 253 dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Confidence 688999999999999999999875
No 177
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.07 E-value=0.0015 Score=59.27 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=51.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..++.++. ..|+.++.+ ..++.+.+ .|+ +. ...|. ...++.+ ++||+|+++==+
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~-~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA-LSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH-HHHHhhcCCCceEEEECCCC
Confidence 4899999999999975444432 234555554 34433332 222 11 11222 1223334 679999876222
Q ss_pred ccccccCC-HHHHHHHHh--hcccCCeEEEEEeCH
Q 021643 239 SDVTQRCD-IADVAVEMD--RILRPGGYVLVQDTL 270 (309)
Q Consensus 239 ~~~~~~~~-~~~~L~Em~--RVLRPGG~lii~D~~ 270 (309)
. .+ .+.++.-+. .+|+|+|.+++.-..
T Consensus 132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 12 233444333 348999999988544
No 178
>PRK04148 hypothetical protein; Provisional
Probab=97.06 E-value=0.001 Score=57.10 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCeEEEeCCcchH-HHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC--CCcceeEeccccccc
Q 021643 166 SVRNVMDMNASYGG-FAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP--RTYDLLHSSFLLSDV 241 (309)
Q Consensus 166 ~~r~VLD~GCG~G~-faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP--~sFDlVh~~~v~~~~ 241 (309)
+..+|||+|||+|. +|..|.+.+. +|+++|.+ +.++.+.++++..+..|.-+ .++. +.+|+|.+.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysirp---- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSIRP---- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEeCC----
Confidence 34689999999995 9999998775 56667777 57888888887666666432 2233 88999876432
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
..++...+.++.+-+ |.-++|.
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEE
Confidence 224555666666543 3444443
No 179
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.00 E-value=0.0018 Score=62.34 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCCCCeEEEeCCcchHHHHHh-hcCCCEEEEecccCCc--c---cHHHHHhcCcchh--hh-hccccCCCCC---CCcce
Q 021643 164 WSSVRNVMDMNASYGGFAAAL-IDQPLWVMNVVPIDAP--D---TLSIIFDRGLIGM--YH-DWCESFNTYP---RTYDL 231 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L-~~~~v~v~~V~p~d~s--~---~l~~a~eRglig~--~~-d~ce~~lpfP---~sFDl 231 (309)
.+..-+||||.||.|...-.. .+.+....+|.-.|.+ + .-+.+.+||+..+ ++ .-|-..-.|. -..++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 355678999999999864333 3333323355555665 2 3467888998443 11 0011111232 45699
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHHHHHHHc----CCCeeeee
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHS----LQWSTNIY 290 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~----l~W~~~~~ 290 (309)
++.+.+++.+++..-+...|.-+.+.|.|||++|.+.++ .-++.|...+.+ .-|-++-.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 999999999987666777899999999999999999753 345566666654 35765543
No 180
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.92 E-value=0.0019 Score=59.56 Aligned_cols=112 Identities=18% Similarity=0.255 Sum_probs=75.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCC-C-CCcceeEeccccccccccC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTY-P-RTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpf-P-~sFDlVh~~~v~~~~~~~~ 245 (309)
-++|||||=....+ +...+ ..+|+++|...+-+-+. ..|+-+..+|- + +.||+|.++.|+..+++..
T Consensus 53 lrlLEVGals~~N~--~s~~~--~fdvt~IDLns~~~~I~-------qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSG--WFDVTRIDLNSQHPGIL-------QQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCc--ccccC--ceeeEEeecCCCCCCce-------eeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 57999998744322 22222 24677777763222222 22444433443 3 8999999999999998766
Q ss_pred CHHHHHHHHhhcccCCeE-----EEEEeCH------H--HHHHHHHHHHcCCCeeeee
Q 021643 246 DIADVAVEMDRILRPGGY-----VLVQDTL------E--MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~-----lii~D~~------~--~~~~i~~l~~~l~W~~~~~ 290 (309)
+--+.+.-+++.|||+|. ++|.-+. . ..++++.|..+|.......
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 666789999999999999 6665321 1 2567889999999886554
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.84 E-value=0.0073 Score=56.61 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c-cHHHHHhcCcc-------hhhhhccccC---CCCCCCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D-TLSIIFDRGLI-------GMYHDWCESF---NTYPRTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~-~l~~a~eRgli-------g~~~d~ce~~---lpfP~sFD 230 (309)
+.++||++|+++|..+.+|+.. +..+..+...... . ..+...+-|+. |...+.-... ..+.++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 3578999999999888777652 2334444432211 1 22233334541 2111110000 11347999
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC---------H-----HHHH----HH----HHHHHcCCCeee
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---------L-----EMIN----KL----KPVLHSLQWSTN 288 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---------~-----~~~~----~i----~~l~~~l~W~~~ 288 (309)
+|+...- +.....++....+.|||||.+++.+. . .... .+ +.+...=+++..
T Consensus 159 ~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~ 232 (247)
T PLN02589 159 FIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEIC 232 (247)
T ss_pred EEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9986532 23355677788899999999887531 0 1111 12 233455567665
Q ss_pred ee--cceEEEEEeC
Q 021643 289 IY--HDQFLVGKKG 300 (309)
Q Consensus 289 ~~--~e~~li~~K~ 300 (309)
+. .+.+++++|.
T Consensus 233 llPigDGl~l~~k~ 246 (247)
T PLN02589 233 MLPVGDGITLCRRI 246 (247)
T ss_pred EEEeCCccEEEEEe
Confidence 54 6788888885
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.81 E-value=0.004 Score=63.45 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-c---cHHHHHhc-Ccch--h-hhhccccCCCCCCCcceeE---
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-D---TLSIIFDR-GLIG--M-YHDWCESFNTYPRTYDLLH--- 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~---~l~~a~eR-glig--~-~~d~ce~~lpfP~sFDlVh--- 233 (309)
...+|||++||.|+=+.+|++. +-. ..|+++|.+ . .+....+| |+.. + ..|-......+|.+||.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3468999999999977776652 100 135666665 2 23322333 5421 1 1221110124568899999
Q ss_pred -ec--ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 234 -SS--FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 234 -~~--~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+ .+|..-++. .+ =.++|....+.|||||+++.+..
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55 333321110 00 04678889999999999999864
No 183
>PLN02823 spermine synthase
Probab=96.77 E-value=0.0024 Score=62.43 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=58.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhcCc-c---------h-hhhhccccCCCCC-CCcce
Q 021643 166 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRGL-I---------G-MYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eRgl-i---------g-~~~d~ce~~lpfP-~sFDl 231 (309)
..++||-+|+|.|+.+..+.+.+ + ..|+-++.. ..++++.+.-. . . ...| +-.++.-. ++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D-a~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND-ARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh-hHHHHhhCCCCccE
Confidence 46799999999999999888753 3 234444444 35666654321 0 0 1111 11133334 78999
Q ss_pred eEeccccccccc-cC---CHHHHHH-HHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQ-RC---DIADVAV-EMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~-~~---~~~~~L~-Em~RVLRPGG~lii~ 267 (309)
|++.. ...... .+ --..++. .+.|.|+|||.+++.
T Consensus 180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99873 221100 00 0135676 899999999999875
No 184
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.77 E-value=0.0021 Score=60.37 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchhhhhccccCCCCCC-CcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYPR-TYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~~~d~ce~~lpfP~-sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++++. .++++|.+ ++++.+.++. +.-..+|.. ..+++. .+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~--~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL--KVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhh--cCCHHHcCcceEEEe
Confidence 35899999999999999998753 45666766 5777776642 222233432 245552 26888877
No 185
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.70 E-value=0.0034 Score=58.54 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++++. .++.+|.. .+++.+.++- +.-...| .+.++ ..||.|+++--+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D----~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGD----ALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEec----cccCCchhceEEEEcCCc
Confidence 46899999999999999998753 45566665 4666665542 1112223 33344 468999887443
No 186
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0084 Score=56.14 Aligned_cols=113 Identities=17% Similarity=0.282 Sum_probs=76.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-chhhhhccccCCC----CCCCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNT----YPRTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~~d~ce~~lp----fP~sFDlVh~~~v~~~ 240 (309)
.+.+||+|+-||||.--+.+++. --|.++|.. +++.--.+... +-++.. +..+.- |....|++.|.-.|..
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~-tN~r~l~~~~~~~~~d~~v~DvSFIS 156 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLER-TNVRYLTPEDFTEKPDLIVIDVSFIS 156 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEec-CChhhCCHHHcccCCCeEEEEeehhh
Confidence 57999999999999999999875 235566665 45544443333 101100 011111 1145689999877763
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEE-------------------e---CHHHHHHHHHHHHcCCCeee
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQ-------------------D---TLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------D---~~~~~~~i~~l~~~l~W~~~ 288 (309)
+..+|-.+..+|.|+|.++.. | +..+++++.+.+....|.+.
T Consensus 157 ------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 157 ------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred ------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 456899999999999988874 2 24578999999999999864
No 187
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.50 E-value=0.011 Score=55.58 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=64.8
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHH----HhcCcc----hhhhhccccCCC--
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGLI----GMYHDWCESFNT-- 224 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a----~eRgli----g~~~d~ce~~lp-- 224 (309)
.+++.+| .+||+.|.|+|+++.+|+.. ...+ .-.+.+ +..+.| .+.|+. ....|.|+.-.+
T Consensus 35 ~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v---~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 35 RLDIRPG--SRVLEAGTGSGSLTHALARAVGPTGHV---YTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEE---EEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCeEE---EccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4556665 58999999999999999852 1233 233444 333333 334552 234566643221
Q ss_pred CCCCcceeEeccccccccccCCHHHHHHHHhhcc-cCCeEEEEE-eCHHHHHHHHHHHHcCCCee
Q 021643 225 YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRIL-RPGGYVLVQ-DTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 225 fP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVL-RPGG~lii~-D~~~~~~~i~~l~~~l~W~~ 287 (309)
..+.||.|+.. +++ +-.++.-+.++| ||||++.+- -..+.+.+.-.-++...|.-
T Consensus 110 ~~~~~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 23789988643 332 344899999999 999987765 44554445444445556653
No 188
>PRK00536 speE spermidine synthase; Provisional
Probab=96.43 E-value=0.0097 Score=56.34 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=60.1
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhc-c---ccCCC-CCCCcceeEe
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDW-C---ESFNT-YPRTYDLLHS 234 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~-c---e~~lp-fP~sFDlVh~ 234 (309)
..+..++||=+|-|-|+.++.+.+.+- .|+-++.- ..++.+++--. .+.+.|- . ..... ..++||+|+.
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIv 145 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIIC 145 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEE
Confidence 345679999999999999999999863 34444443 34444443111 0001110 0 00111 1378999998
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...+. +.+...+.|.|+|||.++..-
T Consensus 146 Ds~~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQEPD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCCC--------hHHHHHHHHhcCCCcEEEECC
Confidence 85432 347789999999999999964
No 189
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.01 Score=58.22 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=67.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhh--hhcc-ccCCCCC-CCcceeEec--c
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMY--HDWC-ESFNTYP-RTYDLLHSS--F 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~--~d~c-e~~lpfP-~sFDlVh~~--~ 236 (309)
.+|||==||||+|+....=.| .++.+.|.. .|++-|.. ++ +..+ ...| -..+|++ ++||.|.+. +
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~-Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKI-NLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred CEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhh-hhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 489999999999875543333 466777887 56655432 22 1111 1111 1368999 889999986 1
Q ss_pred ccccccccCC----HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHH
Q 021643 237 LLSDVTQRCD----IADVAVEMDRILRPGGYVLVQDTLEMINKLKP 278 (309)
Q Consensus 237 v~~~~~~~~~----~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~ 278 (309)
.-+.-..... ..++|.++.++|++||++++.-+.....+..+
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~ 320 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE 320 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh
Confidence 1111111112 66899999999999999999876444444443
No 190
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.28 E-value=0.015 Score=56.66 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=27.3
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHH
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~ 207 (309)
.+...+|||+|||+|..+..|+.+ ..| .++++|.. .+++.|.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~ 155 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQ 155 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHH
Confidence 344578999999999888887653 222 45666665 3444443
No 191
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.03 E-value=0.043 Score=51.06 Aligned_cols=93 Identities=20% Similarity=0.361 Sum_probs=61.5
Q ss_pred CCeEEEeCCcchHHHHHhhc----CC-CEEEEecccCCcccHHHHHhcC-cchhhhhccccCCC--CC---CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALID----QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT--YP---RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~----~~-v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lp--fP---~sFDlVh~~ 235 (309)
..+||-+|+.+|.+..++++ .| |..+...|....+.+..|.+|- ++..+.| ++.| |. ...|+|++.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D---Ar~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED---ARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES----TTSGGGGTTTS--EEEEEEE
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc---CCChHHhhcccccccEEEec
Confidence 45899999999999888876 22 3333444443346788888885 5566666 2333 22 678888765
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+.+..+.+-++.-+..-||+||.++|.
T Consensus 151 -----VaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 151 -----VAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp ------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 233445566888888999999999986
No 192
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.01 E-value=0.016 Score=53.65 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|.++..|+++... ++.+|.. ++++.+.++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKL 70 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHH
Confidence 468999999999999999987543 4444554 455555443
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.96 E-value=0.1 Score=51.43 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhh-hhccccCCCCCCCcceeEeccccccccccC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMY-HDWCESFNTYPRTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~-~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~ 245 (309)
..++||+||++|||+-.|.+++.. |+++|...+-+...+.+-+..+ .+-. ...|-++.+|+++|..+-.
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~L~~~~~V~h~~~d~f-r~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQSLMDTGQVEHLRADGF-KFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHhhhCCCCEEEEeccCc-ccCCCCCCCCEEEEecccC------
Confidence 468999999999999999999864 5555644433333333332111 1111 1233248899999986543
Q ss_pred CHHHHHHHHhhcccCC--eEEEEE
Q 021643 246 DIADVAVEMDRILRPG--GYVLVQ 267 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPG--G~lii~ 267 (309)
+.+++.=|.+-|..| ..+|+.
T Consensus 282 -P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 282 -PARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -HHHHHHHHHHHHhcCcccEEEEE
Confidence 455666666777665 456665
No 194
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.94 E-value=0.0084 Score=59.87 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=81.3
Q ss_pred hhcccchhHHHHHHH-HHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch
Q 021643 140 AFNKDTTHWYALVSD-VYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG 213 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~-~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig 213 (309)
.+..++..|-..-.. .++..+ +. -++|||+=|-||+|+.+-+..|. -.++.+|.| ..|+.+.+. |+..
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~-~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~ 267 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGEL-AA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDG 267 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhh-cc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCc
Confidence 344566666553322 133222 11 35899999999999998888775 245667887 467776654 3322
Q ss_pred hhhhccc----cCCCCC-C---CcceeEec---ccccc---ccccCCHHHHHHHHhhcccCCeEEEEEeCH------HHH
Q 021643 214 MYHDWCE----SFNTYP-R---TYDLLHSS---FLLSD---VTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMI 273 (309)
Q Consensus 214 ~~~d~ce----~~lpfP-~---sFDlVh~~---~v~~~---~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~ 273 (309)
.-|.|-. ..+.+- + +||+|+.. +.=+- +.-..+..+++.+..++|+|||.++++... ..+
T Consensus 268 ~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~ 347 (393)
T COG1092 268 DRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFL 347 (393)
T ss_pred cceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHH
Confidence 1122211 123333 3 99999874 11110 111124667899999999999999998653 345
Q ss_pred HHHHHHHHcC
Q 021643 274 NKLKPVLHSL 283 (309)
Q Consensus 274 ~~i~~l~~~l 283 (309)
+.+.+-+...
T Consensus 348 ~~i~~a~~~~ 357 (393)
T COG1092 348 EIIARAAAAA 357 (393)
T ss_pred HHHHHHHHhc
Confidence 5555554444
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.93 E-value=0.015 Score=52.87 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=54.6
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhc--CCCEEEEecccCCc-ccH-HHHHhcCcch--
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTL-SIIFDRGLIG-- 213 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~--~~v~v~~V~p~d~s-~~l-~~a~eRglig-- 213 (309)
+|......-+.++.+ . +.. ..+|+||-||.|.|+..+++ ++..|..+.-...+ +.+ +.+...++.+
T Consensus 83 yfs~rl~~Er~Ri~~-~-----v~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i 154 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN-L-----VKP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRI 154 (200)
T ss_dssp ---GGGHHHHHHHHT-C-------T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTE
T ss_pred EEccccHHHHHHHHh-c-----CCc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeE
Confidence 455554555555543 1 222 46899999999999999887 44444333222112 222 3333334422
Q ss_pred --hhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 214 --MYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 214 --~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
...| |...++ ...||-|+++. +.. ...+|.+..+.+|+||.+-
T Consensus 155 ~~~~~D-~~~~~~-~~~~drvim~l-----p~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 155 EVINGD-AREFLP-EGKFDRVIMNL-----PES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEES--GGG----TT-EEEEEE-------TSS--GGGGHHHHHHHEEEEEEEE
T ss_pred EEEcCC-HHHhcC-ccccCEEEECC-----hHH--HHHHHHHHHHHhcCCcEEE
Confidence 2233 332333 58999887753 211 1237899999999999874
No 196
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.011 Score=58.54 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEE--EEecccCCcccHHH---HHhcCcchh-----hhhccccCCCCC--CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWV--MNVVPIDAPDTLSI---IFDRGLIGM-----YHDWCESFNTYP--RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v--~~V~p~d~s~~l~~---a~eRglig~-----~~d~ce~~lpfP--~sFDlVh~ 234 (309)
...|||+|.|.|.-+.++.+ +|- -+++-+..+..+.. -.++..... ..+..+.++++| ..|++|+.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 45699999999986655543 220 11122222322211 112222111 112223467887 99999988
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----HHHHHHHHHH
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----EMINKLKPVL 280 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~l~ 280 (309)
.+=+-|....-.+...+.-...+++|||.++|.+.- +.|.+.+.++
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~l 242 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQIL 242 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHH
Confidence 766665554444666888899999999999998753 3455555554
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.92 E-value=0.0099 Score=59.01 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=55.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcch--hhhhccccCCCCCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLIG--MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rglig--~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.+|||++||+|.++..++.. ++ ..|..+|.. ++++.+.+ .|+.. .+..-++..+.-.+.||+|..+= +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 47999999999999998753 32 235556665 34444432 23311 11111111121145699998752 1
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.....++....+.+||||++.++
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12345777767889999999997
No 198
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.90 E-value=0.013 Score=56.07 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++.+. .+..+|.. ++++.+.++ ++ +. ...| .+.++ ..||.|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D----al~~~~~~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD----ALKTEFPYFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC----HhhhcccccCEEEec
Confidence 35899999999999999988653 34555665 466655543 21 11 2223 34455 679999887
No 199
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.88 E-value=0.12 Score=47.66 Aligned_cols=136 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHH--hhcCCCEEEEecccCCc----ccHH-HHHhcCc--ch
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAA--LIDQPLWVMNVVPIDAP----DTLS-IIFDRGL--IG 213 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~--L~~~~v~v~~V~p~d~s----~~l~-~a~eRgl--ig 213 (309)
...+.|.+++.+.-.-...+... ..+++|+|+|.|-=+.- +...... ++-+|.. .-|+ .+.+=|+ +.
T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred CHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 34577877665421100011111 36899999999843333 3333332 3444443 2233 3344466 34
Q ss_pred hhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEE---EeCHHHHHHHHHHHHcCCCeeee
Q 021643 214 MYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV---QDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 214 ~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii---~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
+++.-.|.+-+-+ . ||+|.|..+-+ +..++.=....||+||.++. .-..+.+.+++.......+.+..
T Consensus 121 i~~~RaE~~~~~~~~-~D~vtsRAva~-------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 121 IVHGRAEEFGQEKKQ-YDVVTSRAVAS-------LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred EehhhHhhccccccc-CcEEEeehccc-------hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence 4555444333222 2 99998864332 44456666789999998753 34456677777777777777654
Q ss_pred e
Q 021643 290 Y 290 (309)
Q Consensus 290 ~ 290 (309)
+
T Consensus 193 ~ 193 (215)
T COG0357 193 V 193 (215)
T ss_pred E
Confidence 4
No 200
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.73 E-value=0.03 Score=54.41 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=58.3
Q ss_pred CeEEEeCCcchHHHHH----hhcCCCEEEEecccCCc-ccHHHHHhcC------------cchhhhhccccCCCC---CC
Q 021643 168 RNVMDMNASYGGFAAA----LIDQPLWVMNVVPIDAP-DTLSIIFDRG------------LIGMYHDWCESFNTY---PR 227 (309)
Q Consensus 168 r~VLD~GCG~G~faa~----L~~~~v~v~~V~p~d~s-~~l~~a~eRg------------lig~~~d~ce~~lpf---P~ 227 (309)
..++|+|||.|.=... |...+. ...-+|+|.| +.|+.+.++- +.|.|.+- -..++= +.
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~-l~~l~~~~~~~ 155 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG-LAWLKRPENRS 155 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH-HhhcccccccC
Confidence 4799999999975443 332221 1356899998 5676655431 12333220 011221 23
Q ss_pred CcceeEe-ccccccccccCCHHHHHHHHhh-cccCCeEEEEE
Q 021643 228 TYDLLHS-SFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~-~~v~~~~~~~~~~~~~L~Em~R-VLRPGG~lii~ 267 (309)
...++.. ...+.++.. .+...+|.++.+ .|+|||.++|.
T Consensus 156 ~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 4555544 335555543 346689999999 99999999994
No 201
>PRK13699 putative methylase; Provisional
Probab=95.54 E-value=0.033 Score=51.38 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=36.3
Q ss_pred CCC-CCcceeEec--ccc--cccccc--------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe
Q 021643 224 TYP-RTYDLLHSS--FLL--SDVTQR--------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 224 pfP-~sFDlVh~~--~v~--~~~~~~--------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 286 (309)
.+| +|+|+|+++ +.. .+...+ +-++.++.|++|||||||.+++.-....+..+....+...|.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 567 888888876 111 110000 114578999999999999988743322223333344444443
No 202
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.026 Score=51.77 Aligned_cols=129 Identities=14% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC---C--CEEEEecccCCcccHHHHHhcCc-chhhhhccccCCCCC-CCcceeEecccc-
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---P--LWVMNVVPIDAPDTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL- 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~--v~v~~V~p~d~s~~l~~a~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~- 238 (309)
...|+|+||-.|||+..++++ + +.+.++.|.+....+.++...-. .....+. .--++ ..+|+|.+...=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l---~~~l~~~~~DvV~sD~ap~ 122 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKL---LEALGGAPVDVVLSDMAPN 122 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHH---HHHcCCCCcceEEecCCCC
Confidence 458999999999999888763 2 56667777776532221110000 0001110 11233 447888865222
Q ss_pred -------ccccccCCHHHHHHHHh-hcccCCeEEEEEe-----CHHHHHHHHHHHHcCC----Ceeeee-cceEEEEEe
Q 021643 239 -------SDVTQRCDIADVAVEMD-RILRPGGYVLVQD-----TLEMINKLKPVLHSLQ----WSTNIY-HDQFLVGKK 299 (309)
Q Consensus 239 -------~~~~~~~~~~~~L~Em~-RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~----W~~~~~-~e~~li~~K 299 (309)
.|... -.+.....|+. ++|+|||-|++-+ ..+.+..++.+.+.++ |..+.. .|-.+++.+
T Consensus 123 ~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 123 TSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred cCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 12111 12344555555 5999999999974 4567777777766554 222222 455555543
No 203
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.41 E-value=0.012 Score=52.16 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCeEEEeCCcchHHH--HHhhcCCCE------EEEecccCCc-ccHHHHHhc----Ccchh--hhhccccCCCCC-CCcc
Q 021643 167 VRNVMDMNASYGGFA--AALIDQPLW------VMNVVPIDAP-DTLSIIFDR----GLIGM--YHDWCESFNTYP-RTYD 230 (309)
Q Consensus 167 ~r~VLD~GCG~G~fa--a~L~~~~v~------v~~V~p~d~s-~~l~~a~eR----glig~--~~d~ce~~lpfP-~sFD 230 (309)
...|||-=||+|++. +++...++. -..+.+.|.. ++++.+.+. |+... +..+--..++++ ++||
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 458999999999987 333333322 1113455555 455544432 33211 111111247766 9999
Q ss_pred eeEecccc--cccc---ccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 231 LLHSSFLL--SDVT---QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 231 lVh~~~v~--~~~~---~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
.|+++-=+ ..-. ...-..+++.|+.|+|+|...+++....+. ++.+....|+..
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~ 167 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR 167 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence 99997211 1000 001134678999999999666666665544 333333356543
No 204
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.23 E-value=0.027 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHhhcccCCeEEEEEeCHH
Q 021643 249 DVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 249 ~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
.++.|..=+||+||.++....+.
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHH
Confidence 47889999999999988775543
No 205
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.20 E-value=0.041 Score=54.01 Aligned_cols=107 Identities=8% Similarity=0.185 Sum_probs=60.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc------chhhhhccccC---CCC--------
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL------IGMYHDWCESF---NTY-------- 225 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl------ig~~~d~ce~~---lpf-------- 225 (309)
.+|||++||+|.|+.+|++..- .|.++|.+ .+++.+.+. |+ .+...++.... ..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3599999999999999987532 35556665 466555543 33 11111111100 011
Q ss_pred -CCCcceeEeccccccccccCCH-HHHHHHHhhcccCCeEEEEEeCHHHHHH-HHHHHHcCCCeee
Q 021643 226 -PRTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMINK-LKPVLHSLQWSTN 288 (309)
Q Consensus 226 -P~sFDlVh~~~v~~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~~~-i~~l~~~l~W~~~ 288 (309)
...||+|+.. +++.++ +.++.-+ ++|++.++++=+...+.+ ++.+.+ .|+..
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1258998764 223332 3344444 448999999977665444 666654 46543
No 206
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.19 E-value=0.076 Score=48.82 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=66.2
Q ss_pred CCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc--------ccHHHHHhcCc--chhhhhccccCCCCCC
Q 021643 161 AINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--------DTLSIIFDRGL--IGMYHDWCESFNTYPR 227 (309)
Q Consensus 161 ~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s--------~~l~~a~eRgl--ig~~~d~ce~~lpfP~ 227 (309)
+++++ .+|.|+=-|.|.|.+-|+.. ...|-+++|.+.. .+-..++|.+. ...+..- .-.++-|+
T Consensus 45 Glkpg--~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~-~~A~~~pq 121 (238)
T COG4798 45 GLKPG--ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP-LVALGAPQ 121 (238)
T ss_pred ccCCC--CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc-ccccCCCC
Confidence 35544 58999999999999888763 1256778887662 12223333333 1122110 01244237
Q ss_pred CcceeEecccccccc----ccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 228 TYDLLHSSFLLSDVT----QRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 228 sFDlVh~~~v~~~~~----~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
-.|++..+...+.++ +.....++-.++++.|||||.+.+.|+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 778777654443222 2345778999999999999999998753
No 207
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.03 E-value=0.049 Score=48.95 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-chhhhhccccCCCCC-CCcceeEe
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
+.+.+...||.+|.|||-|..++.++++---++..+..+ +-...-.++ .+ .|..-+.-...--++ .-||.|+|
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 444555689999999999999999987644445555444 222221111 11 222222100123467 88999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.-=+-.++-. .-.++|.+..--|++||-++-.
T Consensus 124 ~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 124 GLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 7555544422 2356899999999999988764
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.98 E-value=0.0076 Score=55.84 Aligned_cols=89 Identities=19% Similarity=0.327 Sum_probs=58.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
..++||+|+|-|.....++..- -.|-+...| .|...-..++. ++ ..+|.+. .=.||+|.|-.++ +
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~ynVl~-~~ew~~t----~~k~dli~clNlL----D 180 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKNYNVLT-EIEWLQT----DVKLDLILCLNLL----D 180 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcCCceee-ehhhhhc----CceeehHHHHHHH----H
Confidence 4789999999999877765421 123344445 35555555554 22 2233210 0239999998777 3
Q ss_pred cC-CHHHHHHHHhhcccC-CeEEEEE
Q 021643 244 RC-DIADVAVEMDRILRP-GGYVLVQ 267 (309)
Q Consensus 244 ~~-~~~~~L~Em~RVLRP-GG~lii~ 267 (309)
+| +.-.+|.+++-||+| .|.+|+.
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEE
Confidence 44 356799999999999 9998885
No 209
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.038 Score=51.18 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHH----------------HhcCcc-hhhhhccccCCCCC--
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSII----------------FDRGLI-GMYHDWCESFNTYP-- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a----------------~eRgli-g~~~d~ce~~lpfP-- 226 (309)
.+.||+|.|+|.+.+.++.. +....+..+++.. +.++.+ +++|-. -+..| | +.-|+
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD-g--r~g~~e~ 160 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD-G--RKGYAEQ 160 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC-c--cccCCcc
Confidence 47999999999877665521 1111223445443 223222 223311 11222 2 45565
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
..||.||+.-.- .+..+++--.|+|||.++|--
T Consensus 161 a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 161 APYDAIHVGAAA---------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCcceEEEccCc---------cccHHHHHHhhccCCeEEEee
Confidence 899999997322 235778888899999988853
No 210
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.038 Score=50.24 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--cchhhhhccccCCC-CCCCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMYHDWCESFNT-YPRTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--lig~~~d~ce~~lp-fP~sFDlVh~~ 235 (309)
+.|+|+|||||.++...+-.+.. .|.++|.- ++++++++.- +.+... +-++... |..-||.++.|
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~-f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVE-FVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceE-EEEcchhhcCCccceEEEC
Confidence 57999999999887555544421 12333332 3444443321 222111 1122333 44889988876
No 211
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.64 E-value=0.023 Score=50.51 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCCCcceeEecccccccc--------ccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 224 TYPRTYDLLHSSFLLSDVT--------QRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 224 pfP~sFDlVh~~~v~~~~~--------~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
-|+++||.+.|-+.++|.. +...-.+.+.++.|+|||||.+++.-+
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 5678899999998898742 223346789999999999999999754
No 212
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.64 E-value=0.025 Score=54.26 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=62.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h----hhhhccccCCC-C--CCCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G----MYHDWCESFNT-Y--PRTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g----~~~d~ce~~lp-f--P~sFDlVh~ 234 (309)
++|||+=|-||+|+.+-+..|. ..|+.+|.| ..++.+.+. |+. . ...|.-+ .+. . .+.||+|++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~-~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK-FLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH-HHHHHHHTT-EEEEEE
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH-HHHHHhcCCCCCEEEE
Confidence 5899999999999998777664 245666777 466666554 331 1 0111100 011 1 278999987
Q ss_pred c---cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHc
Q 021643 235 S---FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHS 282 (309)
Q Consensus 235 ~---~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~ 282 (309)
. +.=+...-..+..+++...-++|+|||.+++.... ..++.+..-+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~ 258 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAARE 258 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCcc
Confidence 4 11111111123567888899999999999887543 234445555543
No 213
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.59 E-value=0.026 Score=54.35 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
.++.+.+.++ ..++|++||.|+.+.++++..--...|.++|.. .++..+.++
T Consensus 11 vl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 11 VVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 4444544433 489999999999999998752111246777877 688887765
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.52 E-value=0.11 Score=53.12 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-------CEEEEecccCCc-ccHHHHH
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-------LWVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-------v~v~~V~p~d~s-~~l~~a~ 207 (309)
..+|||-+||+|+|..++.++. ....++.+.|.. ..+..+.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 4589999999999998887531 123567777776 3555444
No 215
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=0.62 Score=43.12 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=72.5
Q ss_pred HHHHHHHhccC-CCCCCCCeEEEeCCcchHHHHHhhc---CC-CEEEEecccCCcccHHHHHhcC-cchhhhhccccCCC
Q 021643 151 LVSDVYVGGLA-INWSSVRNVMDMNASYGGFAAALID---QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT 224 (309)
Q Consensus 151 ~v~~~y~~~l~-i~~~~~r~VLD~GCG~G~faa~L~~---~~-v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lp 224 (309)
......+..|. +.-....+||=+|+-+|....+.++ .| +..+.++|....+.+..+.+|- ++..+.| +..|
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D---A~~P 136 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED---ARKP 136 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc---cCCc
Confidence 33333444443 2223346899999999999888876 34 4555666766667888888885 5566666 2333
Q ss_pred --CC---CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 225 --YP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 225 --fP---~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|. ...|+|++. +.++.+.+-+..-++.-||+||++++.
T Consensus 137 ~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 137 EKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred HHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 22 556777543 445556666888899999999988875
No 216
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=94.40 E-value=0.053 Score=53.56 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc---chhhhhccccCCCCCCCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl---ig~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+.|||+|||.|.++-.-+..|. -.|-++.+++|.+.|..- .+ |.++-.=-| ....|...|+|++--.=
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE-dieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIE-DIELPEKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccc-cccCchhccEEEeccch
Confidence 357899999999976544444332 234556667776665431 11 111111011 46778899999885222
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE-------eCHHHHHHHHHHHHcCCCe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ-------DTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~-------D~~~~~~~i~~l~~~l~W~ 286 (309)
..+-+. .+..--.-..|-|+|.|..+=+ -..+..--++...+++-|-
T Consensus 254 ~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 254 YMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred hhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 222222 2223333456999999986532 2233344455555666664
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.23 E-value=0.11 Score=48.53 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCeEEEeCCcchHHHHHhh----cCC-CEEEEecccCCcccHHHHHhcCc---ch-hhhhcccc----CCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALI----DQP-LWVMNVVPIDAPDTLSIIFDRGL---IG-MYHDWCES----FNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~----~~~-v~v~~V~p~d~s~~l~~a~eRgl---ig-~~~d~ce~----~lpfP-~sFDlV 232 (309)
.++.||+|.-||..+.+.+ +.| +..+++.+....-..++....|. +. ....-|++ .--+. +|||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 4689999987776443333 333 23333332222224555555554 11 11111221 12246 999999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+. -|+++ .-.....+.-|.|||||.+++..
T Consensus 154 Fv----DadK~--nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DADKD--NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccchH--HHHHHHHHHHhhcccccEEEEec
Confidence 74 34443 34478999999999999999864
No 218
>PRK11524 putative methyltransferase; Provisional
Probab=94.19 E-value=0.17 Score=47.85 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHH
Q 021643 247 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPV 279 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l 279 (309)
+..+|.|+.|+|||||.+++.-....+..+..+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~ 91 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLY 91 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHH
Confidence 357999999999999999987554444434333
No 219
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.16 E-value=0.21 Score=48.90 Aligned_cols=106 Identities=9% Similarity=0.171 Sum_probs=60.0
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc------chhhhhccccCC---CCC--------
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL------IGMYHDWCESFN---TYP-------- 226 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl------ig~~~d~ce~~l---pfP-------- 226 (309)
+|||++||+|.|+..|++... .|+++|.+ ++++.+.+. |+ .+...++..... .++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999999987642 45666666 566665543 32 111122111100 010
Q ss_pred -CCcceeEeccccccccccCCH-HHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCeee
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTN 288 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~ 288 (309)
..||+|+.. +++.++ ..++.- +++|++.++++=.+.. -..++.+.++ |++.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 127887653 234443 334444 4458999999966654 4446666544 6543
No 220
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.08 E-value=0.38 Score=43.83 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEE--EecccCCcccHHHHHhcCc-c-hhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVM--NVVPIDAPDTLSIIFDRGL-I-GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~--~V~p~d~s~~l~~a~eRgl-i-g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
...+|++|||+|.-..+|++. ++..+ ++.|....-+++-|.-.+. + .+..|. ....- ++.|++.-+-=+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl---~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDL---LSGLRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhH---HhhhccCCccEEEECCCc
Confidence 457999999999999888874 22222 2333322224555544432 1 111111 11111 556655544111
Q ss_pred --------------cccc---c-cCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeeeee
Q 021643 239 --------------SDVT---Q-RCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 239 --------------~~~~---~-~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
+.|. + +.-+.++|..+.-+|-|-|.|++.-... -.++|=++.+.-.|.+++.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 1111 0 1115567888888999999998864332 2334444666677766544
No 221
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.05 E-value=0.19 Score=48.08 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc---h--------hhhhccccCCC-CCCCc
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI---G--------MYHDWCESFNT-YPRTY 229 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli---g--------~~~d~ce~~lp-fP~sF 229 (309)
..+..++||=+|-|.|++++.+.+.+- +-.++-++.- ..++.+++.-.. + .+.|- -..+. ++++|
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-~~~v~~~~~~f 150 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-VEFLRDCEEKF 150 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-HHHHHhCCCcC
Confidence 345558999999999999999998752 1233333333 244554433210 0 01110 01232 44799
Q ss_pred ceeEeccccccccccC--CHHHHHHHHhhcccCCeEEEEEeCH-----HHHHHHHHHHHcC
Q 021643 230 DLLHSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQDTL-----EMINKLKPVLHSL 283 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~l~~~l 283 (309)
|+|++...=. ..... --..++..+.|.|+|+|.++..... +.+..+.+-.+++
T Consensus 151 DvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v 210 (282)
T COG0421 151 DVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV 210 (282)
T ss_pred CEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh
Confidence 9998763211 11000 0157899999999999999998221 2334444445555
No 222
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.73 E-value=0.11 Score=52.02 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.0
Q ss_pred CCC-CCcceeEecccccccc
Q 021643 224 TYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 224 pfP-~sFDlVh~~~v~~~~~ 242 (309)
-|| +|.+++|++..+|-+.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccCCCceEEEEeeccceecc
Confidence 489 9999999999997543
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.65 E-value=0.07 Score=52.95 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+-||+|.++...+.+ ++ -.|+.+|.. ++++.+.+. ++ +.+++.-+...+... +.||+|...= |
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 7999999999999998876 33 245556665 344444332 22 111211112223333 6799998753 3
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. ....++...-+.+++||++.++
T Consensus 124 G------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C------CcHHHHHHHHHhcccCCEEEEE
Confidence 1 2345899999999999999997
No 224
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.58 E-value=0.24 Score=46.20 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhcCc----------ch-hhhhccccCC-CCCC-Ccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRGL----------IG-MYHDWCESFN-TYPR-TYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eRgl----------ig-~~~d~ce~~l-pfP~-sFD 230 (309)
+.++||=+|-|.|+.+..+.+.+ +. .|+.++.. ..++.+.+--. .. ...| +-.++ ..++ +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D-g~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD-GRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST-HHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh-hHHHHHhccCCccc
Confidence 56899999999999999999865 32 23333333 24444433110 00 1111 11112 2344 999
Q ss_pred eeEeccccccccc-cCCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCeeeee
Q 021643 231 LLHSSFLLSDVTQ-RCDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 231 lVh~~~v~~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
+|+....-..... .---..+++.+.|.|+|||.+++.- ..+.+..+.+.+++..-.+...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~ 218 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY 218 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence 9987533211100 0012568999999999999999863 3445666666666665555443
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.21 E-value=0.21 Score=47.30 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC------CCEEEEecccCCc-ccHHHHHh----cCcchh-hhhccccCC---CC--CC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DTLSIIFD----RGLIGM-YHDWCESFN---TY--PR 227 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~------~v~v~~V~p~d~s-~~l~~a~e----Rglig~-~~d~ce~~l---pf--P~ 227 (309)
....+|+|-.||+|+|..+..++ ...-.++.+.|.. .+...+.- +|.... .+-.+...+ .+ .+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 33457999999999998777651 0011345555554 34444332 232111 000011111 11 15
Q ss_pred CcceeEeccccccc--c---------------ccCCH-HHHHHHHhhcccCCeEEEEEeCHHH
Q 021643 228 TYDLLHSSFLLSDV--T---------------QRCDI-ADVAVEMDRILRPGGYVLVQDTLEM 272 (309)
Q Consensus 228 sFDlVh~~~v~~~~--~---------------~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~ 272 (309)
.||+|+++==|... . ..... ..++.-+.+.|++||++++.-+...
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 89999987222111 0 00011 2477889999999999776655443
No 226
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.14 E-value=0.029 Score=46.68 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=35.2
Q ss_pred CcceeEeccccc--ccc-ccCCHHHHHHHHhhcccCCeEEEEEeCH--------HHHHHHHHHHHcCCCe
Q 021643 228 TYDLLHSSFLLS--DVT-QRCDIADVAVEMDRILRPGGYVLVQDTL--------EMINKLKPVLHSLQWS 286 (309)
Q Consensus 228 sFDlVh~~~v~~--~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~--------~~~~~i~~l~~~l~W~ 286 (309)
.||+|.|-.+-- |+. -++++..++.-+++.|||||.||+--+. ...+++..-.+++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEC
Confidence 389999865542 443 2346889999999999999999997542 1233444444555554
No 227
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.11 Score=46.62 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=68.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCC---c-ccHHHHHhcCcch--------hhhhccccCCCCC-CCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDA---P-DTLSIIFDRGLIG--------MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~---s-~~l~~a~eRglig--------~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
+.||.+|.|.-++|..|....+..-+|--.|. + ..++-+..+.-.. -.+-| .+.+.-. ++||.|.|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEEe
Confidence 68999999998888777654322222322333 2 3445554444210 11112 2345555 89999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHHHHHHHcCCCeee
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~l~W~~~ 288 (309)
+.|+-.-.. .+.++.-|++.|||.|..++..+. +.+++.-+.+......+.
T Consensus 110 ADClFfdE~---h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 110 ADCLFFDEH---HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred ccchhHHHH---HHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEE
Confidence 987743222 356788999999999987776542 244444444444444433
No 228
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.60 E-value=0.29 Score=50.13 Aligned_cols=97 Identities=13% Similarity=0.281 Sum_probs=66.7
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCcc-cHHHHHhcCc-----c-hhhhhccccCCCCC-CCcceeEecccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-TLSIIFDRGL-----I-GMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~-~l~~a~eRgl-----i-g~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
++|=+|||.-.+...+.+.+. -+|.-+|.|. .+.....++. . -...|. ..+.|+ .+||+|+.-..+.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~--~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM--DQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecc--hhccCCCcceeEEEecCcccc
Confidence 899999999999888888664 3556666663 4555555542 1 112221 258999 99999998777766
Q ss_pred ccccC-------CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRC-------DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~-------~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+-... ...+.+.|+.|+|+|||+++.-..
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 43211 234678999999999999776544
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.54 E-value=0.44 Score=44.63 Aligned_cols=97 Identities=21% Similarity=0.366 Sum_probs=64.2
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCC---EEEEecccCCcccHHHHHhcCc------chhhhhccccCCCCC-CCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPL---WVMNVVPIDAPDTLSIIFDRGL------IGMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v---~v~~V~p~d~s~~l~~a~eRgl------ig~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
.+.++||.+|-|.|-...++.+++. |+ |.+. ++.++.-++-|. +-....|-....+.| +.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~h--p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAH--PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEE--EecC--HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 3457899999999998888877653 22 2221 134555555443 223334433356788 99999986
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...-.+.. ++..+.+-+-|.|||||.+-+..
T Consensus 176 DTy~e~yE---dl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 176 DTYSELYE---DLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred echhhHHH---HHHHHHHHHhhhcCCCceEEEec
Confidence 54434443 47778889999999999987753
No 230
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.04 E-value=0.061 Score=50.87 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=34.5
Q ss_pred CCcceeEecccccccc-ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.||.|.+.+|++... +......++.-+-+.|||||.|++..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4699999999997643 33457789999999999999999963
No 231
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=91.79 E-value=0.4 Score=46.95 Aligned_cols=61 Identities=25% Similarity=0.441 Sum_probs=45.8
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE--------eC--------HH-HHHHHHHHHHcCCCeeee
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ--------DT--------LE-MINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~--------D~--------~~-~~~~i~~l~~~l~W~~~~ 289 (309)
++||+|...+++--- .++-++|.-|..+|+|||.+|=. |. .+ ..+.+..+++.+.|++..
T Consensus 258 ~~~d~VvTcfFIDTa---~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA---HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeech---HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 369999877544322 24788999999999999998753 31 12 478899999999998765
Q ss_pred e
Q 021643 290 Y 290 (309)
Q Consensus 290 ~ 290 (309)
+
T Consensus 335 e 335 (369)
T KOG2798|consen 335 E 335 (369)
T ss_pred e
Confidence 5
No 232
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.75 E-value=0.65 Score=47.04 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc--ccHHHHHhcCcch-hhh-hccccCCCC--C-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLIG-MYH-DWCESFNTY--P-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s--~~l~~a~eRglig-~~~-d~ce~~lpf--P-~sFDlVh~~~v~ 238 (309)
+..++||+=||.|+|+..|+++.-.|..+..+..+ .+-+.|...|+.. .+. .-.|.+.+= - ..||.|+..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD--- 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD--- 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---
Confidence 34689999999999999999865444444443333 3444455555521 110 111222221 2 578998754
Q ss_pred ccccccCCHH-HHHHHHhhcccCCeEEEEEeCHHHHHH
Q 021643 239 SDVTQRCDIA-DVAVEMDRILRPGGYVLVQDTLEMINK 275 (309)
Q Consensus 239 ~~~~~~~~~~-~~L~Em~RVLRPGG~lii~D~~~~~~~ 275 (309)
+.+.+.. .++.++.+ ++|...++||=++..+.+
T Consensus 370 ---PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 370 ---PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLAR 403 (432)
T ss_pred ---CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHH
Confidence 4555555 55555554 678889999966664443
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.57 E-value=0.36 Score=47.44 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=59.1
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-c---cHHHHHhc-Ccc---hhhhhccccCCCCC--CCcce
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-D---TLSIIFDR-GLI---GMYHDWCESFNTYP--RTYDL 231 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~---~l~~a~eR-gli---g~~~d~ce~~lpfP--~sFDl 231 (309)
...+...||||.++.||=+.+|+..- ....-|+++|.+ + .+....+| |+. -..+|-......++ ..||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 33444799999999998666666531 111225777776 2 23322333 542 22223111011233 35999
Q ss_pred eEec------cccccccc------cCC-------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 232 LHSS------FLLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 232 Vh~~------~v~~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|... ++++.-++ ..+ -.++|....++|||||.++.+..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9752 44421110 000 13578889999999999999854
No 234
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=91.24 E-value=0.23 Score=44.38 Aligned_cols=96 Identities=6% Similarity=-0.033 Sum_probs=52.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhh-hhccccCCC-C--C-CCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMY-HDWCESFNT-Y--P-RTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~-~d~ce~~lp-f--P-~sFDlVh~ 234 (309)
.+|||++||+|.++..++.++.. .++.+|.+ .+++.+.+ -++. ..+ .| ....+. + . ..||+|+.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D-~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNS-ALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehh-HHHHHHHhhccCCCceEEEE
Confidence 57999999999999999998752 35555655 34443332 1221 111 11 111121 2 2 24788876
Q ss_pred ccccccccccCCHHHHHHHH--hhcccCCeEEEEEeCH
Q 021643 235 SFLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTL 270 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~ 270 (309)
.==+. ......++.-+ ..+|++||.+++....
T Consensus 128 DPPy~----~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF----NGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCC----CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 42221 11123333322 4589999988886543
No 235
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=91.11 E-value=0.13 Score=45.99 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=51.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch---hh-hhcccc--CCCCC-CCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG---MY-HDWCES--FNTYP-RTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig---~~-~d~ce~--~lpfP-~sFDlVh~~ 235 (309)
.++||+=||+|.++..-+++|.. .++-++.+ ..+..+.+. ++.. ++ .|.... .+... ..||+|++.
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 58999999999999887888742 34444554 233333221 2211 11 111000 11124 899999875
Q ss_pred cccccccccCC-HHHHHHHHh--hcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCD-IADVAVEMD--RILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~-~~~~L~Em~--RVLRPGG~lii~D~~ 270 (309)
-.+.. .. ...++.-+. .+|+++|.+++-...
T Consensus 122 ---PPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 122 ---PPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp ----STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ---CCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 11211 11 255666665 899999999997544
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.90 E-value=0.061 Score=42.64 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=32.1
Q ss_pred EEeCCcchHHHHHhhcC----C-CEEEEecccCCc-ccHHHHHhcCcchhh----hhccccCCCCC-CCcceeEeccccc
Q 021643 171 MDMNASYGGFAAALIDQ----P-LWVMNVVPIDAP-DTLSIIFDRGLIGMY----HDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 171 LD~GCG~G~faa~L~~~----~-v~v~~V~p~d~s-~~l~~a~eRglig~~----~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
|.+|+..|..+..+++. + ..+..|.+.... ...+.+.+.++...+ .+.-+....++ +.||+++...-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 57898899887777652 2 133445444421 122333333331111 11101112455 89999987642
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|- .......+..+.+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1234567888999999999999876
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.75 E-value=0.29 Score=41.32 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhc
Q 021643 165 SSVRNVMDMNASYGGFAAALID 186 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~ 186 (309)
.+...|+|+|||-|.++..|+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 4567999999999999999987
No 238
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=89.86 E-value=0.3 Score=40.37 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred eEEEeCCcchHHHHHhhcCCC--EEEEecccCC
Q 021643 169 NVMDMNASYGGFAAALIDQPL--WVMNVVPIDA 199 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v--~v~~V~p~d~ 199 (309)
++||+|||+|.++..++..+. .+..+.|...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 489999999999999887542 3555655543
No 239
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.44 E-value=0.57 Score=45.69 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=11.9
Q ss_pred CCCC-CCcceeEeccccccc
Q 021643 223 NTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~ 241 (309)
--|| +|.|++|++.++|.+
T Consensus 101 rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 101 RLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp --S-TT-EEEEEEES-TTB-
T ss_pred ccCCCCceEEEEEechhhhc
Confidence 3478 999999999999754
No 240
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.02 E-value=0.88 Score=46.57 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCCeEEEeCCcch--HHHHHhhcCCCEEEEecccCCc-ccHHHHH--hcC-----c---ch-hhhhccccCCCCC--CCc
Q 021643 166 SVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP-DTLSIIF--DRG-----L---IG-MYHDWCESFNTYP--RTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G--~faa~L~~~~v~v~~V~p~d~s-~~l~~a~--eRg-----l---ig-~~~d~ce~~lpfP--~sF 229 (309)
....++|+|.|.| ++++.+.-+. ..-.++-+|-+ .|+..+- -|+ - -. ..++ .++|-+ +.|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y 275 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY 275 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence 4467888887765 5666665443 11112233333 2322221 122 0 11 2333 478887 569
Q ss_pred ceeEeccccccccccCCHHHHHHHHhh-cccCCeEEEEEeC
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQDT 269 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~R-VLRPGG~lii~D~ 269 (309)
|+|+|++.+++..+...-.++..+..| ..||||++++.+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999999999998765555566666655 6899999999864
No 241
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.02 E-value=1.6 Score=44.22 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEeCCcchH---HHHHhhc-CCCEEEEecccCCc-ccH----HHHHhcCc---chhhhhcccc-CCCCCCC
Q 021643 162 INWSSVRNVMDMNASYGG---FAAALID-QPLWVMNVVPIDAP-DTL----SIIFDRGL---IGMYHDWCES-FNTYPRT 228 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~---faa~L~~-~~v~v~~V~p~d~s-~~l----~~a~eRgl---ig~~~d~ce~-~lpfP~s 228 (309)
+.+....+||||.|-.|| +.|+|.+ .|+ |.+.|.. +-+ +.+..-|. +...+|--|. .--||++
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGS 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcc
Confidence 556667899999999996 4455544 453 4555654 222 23333454 3333442110 0125679
Q ss_pred cceeE----ecc--ccccccccCC-------------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 229 YDLLH----SSF--LLSDVTQRCD-------------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 229 FDlVh----~~~--v~~~~~~~~~-------------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
||-|. |+. +.+--+..+. -.++|...-..+||||+++.+..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 99986 554 4431111000 02456666778999999999864
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=88.53 E-value=0.92 Score=41.80 Aligned_cols=95 Identities=25% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHH-----HhcCc-chhhhhccccCCCCC-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSII-----FDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a-----~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+-++|||+|+|.|--+.+-+..+. ..++..|...-+..+ ...|. +...|. ..... ..||++.++.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~----d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHA----DLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeec----cccCCCcceeEEEeecee
Confidence 347899999999965444333321 112233332111111 12232 222332 34446 999999999988
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..- ..-.+++.=.+|+..-|-.+++-|.
T Consensus 153 y~~---~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 153 YNH---TEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cCc---hHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 632 2233456644444445556666665
No 243
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.36 E-value=1.2 Score=42.14 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCCeEEEeCCcchH--HHHHhhcCCCEEEEecccCCc---ccHHHHHhcCc----------chhhhhcccc--CCCCCCC
Q 021643 166 SVRNVMDMNASYGG--FAAALIDQPLWVMNVVPIDAP---DTLSIIFDRGL----------IGMYHDWCES--FNTYPRT 228 (309)
Q Consensus 166 ~~r~VLD~GCG~G~--faa~L~~~~v~v~~V~p~d~s---~~l~~a~eRgl----------ig~~~d~ce~--~lpfP~s 228 (309)
...+||.+|+|+|- .++++.... +++-.|.+ ..++...+++. +....+|.++ ...++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~----~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGA----EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcc----eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 45789999999983 344443221 22223333 23444433322 1122345442 1223333
Q ss_pred -cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 229 -YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 229 -FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
||+|.++.++.+....+++ +.=|.-.|--+|.+++.-
T Consensus 162 ~~DlilasDvvy~~~~~e~L---v~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGL---VKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cccEEEEeeeeecCCcchhH---HHHHHHHHhcCCeEEEEE
Confidence 9999999999876655554 444555677777655543
No 244
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=88.26 E-value=0.71 Score=42.12 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred CcceeEecc-ccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSF-LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~-v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.-|+|+++. +|. .++...|.++.+-||||-++|-.
T Consensus 122 ~AdvVf~Nn~~F~-----~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 122 DADVVFVNNTCFD-----PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp C-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CCCEEEEeccccC-----HHHHHHHHHHHhcCCCCCEEEEC
Confidence 358888874 342 23566778888899998877653
No 245
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=88.10 E-value=1.9 Score=42.23 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=53.3
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc--ccHHHHHhcCcch--hhhhccccCC---------------CCC-CC
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLIG--MYHDWCESFN---------------TYP-RT 228 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s--~~l~~a~eRglig--~~~d~ce~~l---------------pfP-~s 228 (309)
+|||+-||+|.|+..|++..-.|+.|.....+ ++..-+...|+.. .+..-++... ... ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 278 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFK 278 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcC
Confidence 79999999999999999976555555433222 2333444445411 0100011110 112 25
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeee
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~ 288 (309)
+|+|+.. |++.++...+.+.- .++.=.++++=.+. ....++.|.+ .|++.
T Consensus 279 ~d~vilD------PPR~G~~~~~~~~~--~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 279 FDAVILD------PPRAGLDEKVIELI--KKLKRIVYVSCNPATLARDLKILKE--GYKLE 329 (352)
T ss_dssp ESEEEE---------TT-SCHHHHHHH--HHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred CCEEEEc------CCCCCchHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence 7777543 34444433333332 35666778874444 4455665544 46543
No 246
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=86.21 E-value=2.2 Score=38.91 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=67.2
Q ss_pred EEEeCCcchHHHHHhhcCCCEEEEecccCCc-c----cHHHHHhcCcchhhhhcccc-CCCCC-C-CcceeEeccccccc
Q 021643 170 VMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDRGLIGMYHDWCES-FNTYP-R-TYDLLHSSFLLSDV 241 (309)
Q Consensus 170 VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~----~l~~a~eRglig~~~d~ce~-~lpfP-~-sFDlVh~~~v~~~~ 241 (309)
|.|+||--|.+..+|.+++. +-.+.+.|.. . ..+.+...|+.......+.. ..+++ + ..|.|+.+++=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH-
Confidence 68999999999999999874 2234455554 2 33344445653322221221 33555 4 4788877654432
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
-+.++|.+....++..-.||+.-. .-...+++-+....|...-.
T Consensus 79 ----lI~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ----LIIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ----HHHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEE
T ss_pred ----HHHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEe
Confidence 256788888888887778888654 45678999999999976544
No 247
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.07 E-value=0.48 Score=41.52 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcccCCeEEEEE
Q 021643 247 IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~ 267 (309)
+...+.|+.|+|||||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 577999999999999998886
No 248
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=85.94 E-value=0.32 Score=43.06 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.8
Q ss_pred CeEEEeCCcchHHHHHhhcCC
Q 021643 168 RNVMDMNASYGGFAAALIDQP 188 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~ 188 (309)
+.|+|+.||.||-+..++...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~ 21 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF 21 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT
T ss_pred CEEEEeccCcCHHHHHHHHhC
Confidence 379999999999999999875
No 249
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.77 E-value=1.6 Score=46.69 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=39.7
Q ss_pred EecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEecccc-ccccccCCHHHHHHH---Hhhcc
Q 021643 193 NVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHSSFLL-SDVTQRCDIADVAVE---MDRIL 258 (309)
Q Consensus 193 ~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~~~v~-~~~~~~~~~~~~L~E---m~RVL 258 (309)
.+.++|.. .++..|.+. |+.. ...|+.+...+++ ++||+|+++==+ ..+.+..++..+..+ +.|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 46777776 466555443 5421 1223332223444 689999998111 111111233334344 44444
Q ss_pred cCCeEEEEEeCHH
Q 021643 259 RPGGYVLVQDTLE 271 (309)
Q Consensus 259 RPGG~lii~D~~~ 271 (309)
.||+.+++-....
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4998876665544
No 250
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=85.54 E-value=1.4 Score=40.00 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCCCC---CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP---RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lpfP---~sFDlVh~~ 235 (309)
..++||+=||+|..+..-++++.- .++-++.+ .+.+++.+. ++ ...+..-....++-. ..||+|+..
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 358999999999999888888753 23334444 333333332 21 111221111233333 349999875
Q ss_pred cccccccccCCH--HHH--HHHHhhcccCCeEEEEEeCHH
Q 021643 236 FLLSDVTQRCDI--ADV--AVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 236 ~v~~~~~~~~~~--~~~--L~Em~RVLRPGG~lii~D~~~ 271 (309)
==|. .+-. +.. +.+-...|+|+|.+++-...+
T Consensus 122 PPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2222 1111 222 333678899999999976654
No 251
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.49 E-value=0.29 Score=46.57 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=63.4
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c---cHHHHHhc-Cc--chhh-hhccccCCC-CC-CCcc
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D---TLSIIFDR-GL--IGMY-HDWCESFNT-YP-RTYD 230 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~---~l~~a~eR-gl--ig~~-~d~ce~~lp-fP-~sFD 230 (309)
......|||++||.||-+..|++. .. .|++.|.+ + .+....+| |+ +.+. +|... ..+ ++ ..||
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g---~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~-~~~~~~~~~fd 158 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKG---EIVANDISPKRLKRLKENLKRLGVFNVIVINADARK-LDPKKPESKFD 158 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTS---EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHH-HHHHHHTTTEE
T ss_pred ccccccccccccCCCCceeeeeecccchh---HHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccc-ccccccccccc
Confidence 344567999999999977777652 22 35566665 3 22222223 44 1122 33211 122 23 4699
Q ss_pred eeEec------cccccccc------cCC-------HHHHHHHHhhcc----cCCeEEEEEeCH----HHHHHHHHHHHc
Q 021643 231 LLHSS------FLLSDVTQ------RCD-------IADVAVEMDRIL----RPGGYVLVQDTL----EMINKLKPVLHS 282 (309)
Q Consensus 231 lVh~~------~v~~~~~~------~~~-------~~~~L~Em~RVL----RPGG~lii~D~~----~~~~~i~~l~~~ 282 (309)
.|... +++..-++ ..+ -.++|....+.| ||||+++.+... +.-+.|+.++++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~ 237 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR 237 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 99852 22322110 011 135788889999 999999999753 234455555544
No 252
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.80 E-value=3 Score=39.85 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=62.3
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc--ccHHHHHhc-CcchhhhhccccCCCCC-----C
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--DTLSIIFDR-GLIGMYHDWCESFNTYP-----R 227 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s--~~l~~a~eR-glig~~~d~ce~~lpfP-----~ 227 (309)
++-|+++ .+||=+|+++|..-....+- .-.|-.|.-..-+ +.+..|..| +++.++.| ++.|+. .
T Consensus 151 nihikpG--sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED---ArhP~KYRmlVg 225 (317)
T KOG1596|consen 151 NIHIKPG--SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED---ARHPAKYRMLVG 225 (317)
T ss_pred ceeecCC--ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc---CCCchheeeeee
Confidence 3335554 48999999999877776652 1122223222223 456667666 45666666 355544 3
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
-.|+|++ .+.+.++..-+.+-..--||+||-|+|+-
T Consensus 226 mVDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 226 MVDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eEEEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 4566644 44444555557788888999999999974
No 253
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.57 E-value=0.31 Score=45.97 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=65.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CC--E-EE--EecccCCcccHHHHHhcCcchhhhhc-----cccCC-CCC-CCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PL--W-VM--NVVPIDAPDTLSIIFDRGLIGMYHDW-----CESFN-TYP-RTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v--~-v~--~V~p~d~s~~l~~a~eRglig~~~d~-----ce~~l-pfP-~sFD 230 (309)
.+.+|.|+.+..|+|+..|.++ +. - .- -|+++|...|.++ +|++....|. .|..+ -|. .--|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 3788999999999999888763 10 0 00 1556666544443 2332111111 11112 344 5789
Q ss_pred eeEeccc-----ccccc---ccCCHHHHHHHHhhcccCCeEEEEE-----eCHHHHHHHHHHHHcC
Q 021643 231 LLHSSFL-----LSDVT---QRCDIADVAVEMDRILRPGGYVLVQ-----DTLEMINKLKPVLHSL 283 (309)
Q Consensus 231 lVh~~~v-----~~~~~---~~~~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~l~~~l 283 (309)
+|+|... +|.+. +..-+..+|.=.-+||||||.|+-- |..-.-..++.+.+++
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhce
Confidence 9999743 22221 1112445666778999999999863 4444455666666544
No 254
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=79.62 E-value=6 Score=39.04 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccH----HHHHhcCcc----hhhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL----SIIFDRGLI----GMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l----~~a~eRgli----g~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|+||=||.|.|+..++..+.- .|.++|.. .+. +.+.-.++. ...+| |. ..+.. +.||-|+...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD-~r-ev~~~~~~aDrIim~~ 264 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD-AR-EVAPELGVADRIIMGL 264 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEecc-HH-HhhhccccCCEEEeCC
Confidence 358999999999999998886532 13344442 222 222222331 23334 22 23444 8999998764
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCH---H----HHHHHHHHHHcCCCe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---E----MINKLKPVLHSLQWS 286 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~----~~~~i~~l~~~l~W~ 286 (309)
.-. -..++-..-+.||+||.+.+-+.. + ....+++.+.++.-+
T Consensus 265 p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 265 PKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK 314 (341)
T ss_pred CCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCc
Confidence 332 133788888899999998875432 1 567888888777543
No 255
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.17 E-value=2.1 Score=42.71 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.4
Q ss_pred CC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 225 YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 225 fP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.| ++||.++-+..+..+. ..+....+.++.|.+||||.++++.-
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~-~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMD-PEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCCCeeEEEecchhhhCC-HHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 56 9999998888777554 36688999999999999999999854
No 256
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.05 E-value=8.1 Score=37.55 Aligned_cols=99 Identities=22% Similarity=0.214 Sum_probs=55.1
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhc-Cc--chhhh--hccccCCCC-C-CCcceeEeccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR-GL--IGMYH--DWCESFNTY-P-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eR-gl--ig~~~--d~ce~~lpf-P-~sFDlVh~~~v 237 (309)
.+||..|||. |.++..+++ .+.. .+..++.+ ..++.+.+. +. +.... ++.+....+ + +.+|+|+-...
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 5799999987 777777776 4432 13333433 466777766 32 11111 111111122 2 57998876321
Q ss_pred c-----------ccc-cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 L-----------SDV-TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~-----------~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
- .|. ....+....+.++.|.|+|||.+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 010 001122457999999999999998863
No 257
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=76.47 E-value=8.9 Score=35.50 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=51.2
Q ss_pred CeEEEeCCc-chHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhc----cccCCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDW----CESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG-~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~----ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
.+||..|+| .|.++..+++ .+..+..+ +.+ ...+.+.+.|....+... .+.....+ +.+|+++....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~---~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAV---DIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC--
Confidence 578888876 4777777776 45544333 333 455666666652211110 00000124 77898864211
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
....+.++.|.|+|||.++..
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 242 -------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEE
Confidence 134789999999999999875
No 258
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=75.37 E-value=14 Score=35.88 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=69.1
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc-----cHHHHHhcCcc----hhhhhccccCCCCC---
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-----TLSIIFDRGLI----GMYHDWCESFNTYP--- 226 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~-----~l~~a~eRgli----g~~~d~ce~~lpfP--- 226 (309)
.|.+.+| ..|+..|.|+|+++-+++..-.-.-.+--.+.++ .++--++.|+. ....|.|. ..|+
T Consensus 100 ~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~--~GF~~ks 175 (314)
T KOG2915|consen 100 MLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG--SGFLIKS 175 (314)
T ss_pred HhcCCCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc--CCccccc
Confidence 3445555 5899999999999888876310001223334442 34444555642 23446775 5555
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCe-EEE-EEeCHHHHHHHHHHHHcCCCeeee
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG-YVL-VQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG-~li-i~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
..+|.|+-. ++. +-.++=-.+.+||-+| +++ |+-..+.+++--..+.+..|....
T Consensus 176 ~~aDaVFLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 176 LKADAVFLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIE 232 (314)
T ss_pred cccceEEEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEE
Confidence 788887543 332 2234555566898877 333 334455566666777888887543
No 259
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=75.33 E-value=5.1 Score=38.07 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWV 191 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v 191 (309)
..+||.+|+|.|.++..|+++...+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v 55 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARV 55 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeE
Confidence 5689999999999999999976443
No 260
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=73.18 E-value=17 Score=36.30 Aligned_cols=126 Identities=20% Similarity=0.104 Sum_probs=69.5
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCC--CE-EEEecccCCc----ccHHHHHhcCc----chhhhhc-----cc--cCCCCC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQP--LW-VMNVVPIDAP----DTLSIIFDRGL----IGMYHDW-----CE--SFNTYP 226 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~--v~-v~~V~p~d~s----~~l~~a~eRgl----ig~~~d~-----ce--~~lpfP 226 (309)
.+..+||||.|-.|+=.+.|.+.- -+ --.|+..|.. ++|.....|-. ..+-|+. +. ...++.
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 345689999999999887777521 11 0135566664 35555444422 1122221 00 001344
Q ss_pred -CCcceeEec------ccccccc----c-----c-CC----HHHHHHHHhhcccCCeEEEEEeCH-------H-HHHHHH
Q 021643 227 -RTYDLLHSS------FLLSDVT----Q-----R-CD----IADVAVEMDRILRPGGYVLVQDTL-------E-MINKLK 277 (309)
Q Consensus 227 -~sFDlVh~~------~v~~~~~----~-----~-~~----~~~~L~Em~RVLRPGG~lii~D~~-------~-~~~~i~ 277 (309)
-.||=|.|. ..+.+-. . + -+ -..+|.---|.|||||.+|.+... . +.+.++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~ 313 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQ 313 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHH
Confidence 678988764 2222211 0 0 01 124677778999999999998631 2 334455
Q ss_pred HHHHcCCCeeeee
Q 021643 278 PVLHSLQWSTNIY 290 (309)
Q Consensus 278 ~l~~~l~W~~~~~ 290 (309)
++..++.|-....
T Consensus 314 ~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 314 KVGGAVELVDVSG 326 (375)
T ss_pred HhcCcccceeecc
Confidence 6667777765544
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=72.78 E-value=8.9 Score=39.89 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=35.0
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcCC--CEEEEecccCCcccHHHHHhcCc
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAPDTLSIIFDRGL 211 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~~--v~v~~V~p~d~s~~l~~a~eRgl 211 (309)
..+++.+ ..+||+-||||.++.+|++.- |.++.+.|.+.+++-.-|...|+
T Consensus 378 ~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 378 WAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI 430 (534)
T ss_pred HhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc
Confidence 3445544 589999999999999999853 44445556555555555566665
No 262
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=72.35 E-value=12 Score=36.35 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=58.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcC--c-----chhhhhccccCCCCC-CCcceeEec---
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG--L-----IGMYHDWCESFNTYP-RTYDLLHSS--- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRg--l-----ig~~~d~ce~~lpfP-~sFDlVh~~--- 235 (309)
...||.+|-|||.+...|.+.+..|+.+.- | +.|+....+|+ . ..+++. .++--+ -.||.++++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~-D-prmvael~krv~gtp~~~kLqV~~g---D~lK~d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKVVAVEI-D-PRMVAELEKRVQGTPKSGKLQVLHG---DFLKTDLPRFDGCVSNLPY 133 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeEEEEec-C-cHHHHHHHHHhcCCCccceeeEEec---ccccCCCcccceeeccCCc
Confidence 468999999999999999998765544321 1 13555555553 2 122221 245445 567877763
Q ss_pred -----ccccccc----ccCCHHHHHHHH-h-hcccCCeEEEEEeC--HHHHHHHHHHH
Q 021643 236 -----FLLSDVT----QRCDIADVAVEM-D-RILRPGGYVLVQDT--LEMINKLKPVL 280 (309)
Q Consensus 236 -----~v~~~~~----~~~~~~~~L~Em-~-RVLRPGG~lii~D~--~~~~~~i~~l~ 280 (309)
.+|-.+. .+|..--+=.|. . =+-|||-.++.+-+ .+++.+++.+.
T Consensus 134 qISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~ 191 (315)
T KOG0820|consen 134 QISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIM 191 (315)
T ss_pred cccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhhe
Confidence 1221111 123211111121 1 25578887776644 34566666655
No 263
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=71.53 E-value=17 Score=34.56 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=51.4
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccC---CCCCCCcceeEeccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF---NTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~---lpfP~sFDlVh~~~v~~~~ 241 (309)
.+||=.|+|. |.++..+++ .+..+..+...+.+ +.++++.+-|...+ +.-+.. ....+.||+|+-..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~----- 246 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT----- 246 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc-----
Confidence 5788889875 667777765 45544444433323 45667777665321 110100 01124578775431
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. -...+.+..++|||||.+++.
T Consensus 247 g----~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 G----VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C----CHHHHHHHHHHccCCcEEEEE
Confidence 1 123688999999999998874
No 264
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=70.37 E-value=13 Score=34.39 Aligned_cols=128 Identities=18% Similarity=0.355 Sum_probs=60.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC----C-CEEEEecccCCcccHHHHHhcCc--chhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ----P-LWVMNVVPIDAPDTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~----~-v~v~~V~p~d~s~~l~~a~eRgl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+||..|+|+.--.++ + +.++++.++..++-..++.-..+ ...+... +--.| +..|+|++...-
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki---~e~lp~r~VdvVlSDMap 146 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKI---FEALPNRPVDVVLSDMAP 146 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHH---HHhCCCCcccEEEeccCC
Confidence 468999999999998655442 1 23333333322211111110000 0111111 11237 889999875321
Q ss_pred --------cccc--ccCCHHHHHHHHhhcccCCeEEEEE-----eCHHHHHHHHHHHHcCC-Ceeeee----cceEEEEE
Q 021643 239 --------SDVT--QRCDIADVAVEMDRILRPGGYVLVQ-----DTLEMINKLKPVLHSLQ-WSTNIY----HDQFLVGK 298 (309)
Q Consensus 239 --------~~~~--~~~~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~l~~~l~-W~~~~~----~e~~li~~ 298 (309)
-|.. +-|+ .+|.=.--.++|+|.|+.- +......++.+.-..++ -+..+. .|-.++|.
T Consensus 147 naTGvr~~Dh~~~i~LC~--s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~ 224 (232)
T KOG4589|consen 147 NATGVRIRDHYRSIELCD--SALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCL 224 (232)
T ss_pred CCcCcchhhHHHHHHHHH--HHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeeee
Confidence 1111 1121 1222223457799999985 34445555555443332 111111 56777776
Q ss_pred e
Q 021643 299 K 299 (309)
Q Consensus 299 K 299 (309)
+
T Consensus 225 ~ 225 (232)
T KOG4589|consen 225 N 225 (232)
T ss_pred e
Confidence 5
No 265
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=70.34 E-value=4.6 Score=37.67 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPL 189 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v 189 (309)
....|+|+|+|+|.++..|.+.+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~ 53 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGK 53 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSS
T ss_pred CCCEEEEeCCCCccchhhHhcccC
Confidence 356899999999999999998763
No 266
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=69.34 E-value=17 Score=34.79 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=44.4
Q ss_pred CCeEEEeCCcchHHH-HHhhcCCCEEEEecccCCc-ccHHHH----H-hcCcch--hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFA-AALIDQPLWVMNVVPIDAP-DTLSII----F-DRGLIG--MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~fa-a~L~~~~v~v~~V~p~d~s-~~l~~a----~-eRglig--~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
.++|+=+|+|.=-++ ..|+++......|..+|.. ...+.+ . .-|+.. .++.--....++. ..||+|+-+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999964444 3444331111223344443 222222 2 113311 1111001124566 8999998765
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.... +..+.+++|..+.+.++||..+++|...
T Consensus 201 lVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 201 LVGM--DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred hccc--ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 5532 2346789999999999999999999543
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=67.86 E-value=6.3 Score=38.90 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=54.5
Q ss_pred CeEEEeCCc-chHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccC-CCCCCCcceeEeccccccccc
Q 021643 168 RNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF-NTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 168 r~VLD~GCG-~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~-lpfP~sFDlVh~~~v~~~~~~ 243 (309)
..|+=+|+| .|+.|..+++ .+ ..|..+|.+ +.++.|++-|-.-.+..--+.. -.....||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~------ 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG------ 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC------
Confidence 356656655 5677877777 44 456677777 5788888877532221100111 122245999875432
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...+...-+.||+||.+++.-
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEEC
Confidence 225778889999999999863
No 268
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=66.50 E-value=13 Score=31.28 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=44.3
Q ss_pred CCcceeEeccccccccccCC-HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee-----cceEEEEEeC
Q 021643 227 RTYDLLHSSFLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY-----HDQFLVGKKG 300 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~-----~e~~li~~K~ 300 (309)
..||+++-.. |+.-.+.+- -.+++.++.|+++|||.+.--.... .|++-+..-.+++... +.+++++.|+
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~---~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYSSAG---AVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BH---HHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechH---HHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 4577776543 443222110 1579999999999999887755543 4777777788887654 6678888774
No 269
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=65.86 E-value=11 Score=37.58 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=63.5
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc---c-cHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccccc-c
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP---D-TLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT-Q 243 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s---~-~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~-~ 243 (309)
+||=+|=.+|-++..|+..++..+ .|.- . +.+.....|+.+....+-....++|+.+|+|... ++ .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~----~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~-----~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI----GDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK-----VPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee----ehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEE-----eCCC
Confidence 689999999999999997654322 2221 1 2233333344322111212345677779988542 33 2
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeCHH-----HHHHHHHHH
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDTLE-----MINKLKPVL 280 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~l~ 280 (309)
...++..|..+.++|.||+.+++-.... +++.+++++
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k~l 159 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVL 159 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHHHh
Confidence 2346778888999999999988776543 356666665
No 270
>PHA01634 hypothetical protein
Probab=64.27 E-value=13 Score=32.40 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCC-EEEEecc
Q 021643 144 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL-WVMNVVP 196 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p 196 (309)
+-..|+....+ |- .+.+ ..++|+|+|++.|..|.+++-+|. .|..+.|
T Consensus 11 ~c~ywrey~~~-Y~-~idv---k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~ 59 (156)
T PHA01634 11 ECDYWREYPHA-YG-MLNV---YQRTIQIVGADCGSSALYFLLRGASFVVQYEK 59 (156)
T ss_pred cchHHHHHHHH-hh-heee---cCCEEEEecCCccchhhHHhhcCccEEEEecc
Confidence 56778877754 53 2332 247899999999999999987764 3444444
No 271
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=60.71 E-value=11 Score=36.39 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=42.3
Q ss_pred CCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HHHHHHHHHHHHcCCCeee
Q 021643 223 NTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 223 lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~l~W~~~ 288 (309)
.-|.+-||+|+.+.-..|.- =-|+.++++|||.+++-.. ..+.++|+++|+.-.|+..
T Consensus 217 ~ky~~~Fd~ifvs~s~vh~L--------~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 217 SKYQNFFDLIFVSCSMVHFL--------KPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred HhhcCCCCEEEEhhhhHhhc--------chHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 34557899998775554432 1158889999999999642 3478999999999888753
No 272
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=60.09 E-value=32 Score=36.34 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=35.9
Q ss_pred CCcceeEeccccccccccCC-HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 227 RTYDLLHSSFLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
..||+++... |+.-++.+- -++++.+|.|.++|||.++--.... .|++-+..-..++.
T Consensus 165 ~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~---~vr~~l~~~GF~v~ 223 (662)
T PRK01747 165 ARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATFTSAG---FVRRGLQEAGFTVR 223 (662)
T ss_pred ccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEeehHH---HHHHHHHHcCCeee
Confidence 5589888653 554332221 2579999999999999998654433 33444444444443
No 273
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=60.09 E-value=23 Score=32.75 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeeecceEEEEEeC
Q 021643 247 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKG 300 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~~e~~li~~K~ 300 (309)
+...+.|+.|+|+|+|.+.+...-.....+..+++.+.|+..- ..||.|+
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~~----~iiw~k~ 127 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILG----KIIWKKP 127 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEee----eEEEeCC
Confidence 5678999999999999999999888888888888888887542 4455554
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=58.80 E-value=16 Score=34.39 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=36.1
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcch--hhhhccccCCC--CCCCcceeEec
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIG--MYHDWCESFNT--YPRTYDLLHSS 235 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig--~~~d~ce~~lp--fP~sFDlVh~~ 235 (309)
+|+|+-||.|++...|...+..+ +..+|........+++.... ...|..+ ..+ .+..+|+++++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~~~~~N~~~~~~~~Di~~-~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAETYEANFPNKLIEGDITK-IDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHHHHHHhCCCCCccCcccc-CchhhcCCCCCEEEeC
Confidence 58999999999998888877433 44555543222333333211 1122211 111 14569999876
No 275
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=58.58 E-value=23 Score=33.62 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=49.0
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhcccc--CCCCC-CCcceeEeccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCES--FNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~--~lpfP-~sFDlVh~~~v~~~~ 241 (309)
.+||=.|||. |.++..+++ .+.. .|..++.+ +.++.+.+.|...++..--+. ...-. +.||+|+-. .
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~-----~ 243 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV-----S 243 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC-----C
Confidence 5788888864 556666665 3431 23334444 467778777742211100000 01111 348877532 1
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. -...+.+..+.|||||.+++.
T Consensus 244 G----~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 244 G----HPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred C----CHHHHHHHHHHhhcCCEEEEE
Confidence 1 123678889999999999875
No 276
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.19 E-value=13 Score=29.74 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=48.1
Q ss_pred cchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhh----ccccC-CCCC-CCcceeEeccccccccccCCH
Q 021643 176 SYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHD----WCESF-NTYP-RTYDLLHSSFLLSDVTQRCDI 247 (309)
Q Consensus 176 G~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d----~ce~~-lpfP-~sFDlVh~~~v~~~~~~~~~~ 247 (309)
|.|.++..+++ .+. +|...+.+ ..++.+.+-|...++.. +.+.. -.++ +.+|+|+=. .. -
T Consensus 1 ~vG~~a~q~ak~~G~---~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g----~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA---KVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VG----S 68 (130)
T ss_dssp HHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----SS----S
T ss_pred ChHHHHHHHHHHcCC---EEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe-----cC----c
Confidence 56888888876 453 34444444 46778887774211111 11111 1234 578888532 11 1
Q ss_pred HHHHHHHhhcccCCeEEEEE
Q 021643 248 ADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 248 ~~~L~Em~RVLRPGG~lii~ 267 (309)
...+.+.-.+|||||.+++-
T Consensus 69 ~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEEE
Confidence 45899999999999999885
No 277
>PRK10742 putative methyltransferase; Provisional
Probab=57.81 E-value=42 Score=31.82 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=25.8
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEE
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWV 191 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v 191 (309)
+..+++.+..-+|||.=+|+|.-|--++.++..|
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V 113 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV 113 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEE
Confidence 3455555443489999999999999999888654
No 278
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=57.22 E-value=54 Score=31.08 Aligned_cols=85 Identities=13% Similarity=-0.034 Sum_probs=48.5
Q ss_pred CCeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 167 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
..+||=.|+|. |.+++.+++ .+..++. .+.+ +.++.+++-|...++.. + -+-++.||+++-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~---~~~~~~~~~~a~~~Ga~~vi~~--~--~~~~~~~d~~i~~~~------ 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHV---MTRGAAARRLALALGAASAGGA--Y--DTPPEPLDAAILFAP------ 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEE---EeCChHHHHHHHHhCCceeccc--c--ccCcccceEEEECCC------
Confidence 35788889764 445555655 4544333 3333 35677777775322211 0 011255786542111
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEE
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
....+.+..+.|||||.+++.
T Consensus 233 ---~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 ---AGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ---cHHHHHHHHHhhCCCcEEEEE
Confidence 123688899999999999874
No 279
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.73 E-value=15 Score=32.73 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=36.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-----chhhhhcccc-CCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCES-FNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-----ig~~~d~ce~-~lpfP-~sFDlVh~~~v~~ 239 (309)
..++|+|||.|-+.-+..-.+. -.+.++|.. ++|++...... +..+. |.- .+-+. +.||.++.+-=|-
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLq--cdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQ--CDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheee--eeccchhccCCeEeeEEecCCCC
Confidence 5799999999987644433221 134455554 45655433221 11111 211 12233 8999988775554
No 280
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=56.72 E-value=27 Score=33.40 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=28.5
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+....+++|+++..+...++......|-||.+++|+
T Consensus 154 vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 154 VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 455678899988788999999999999999999998
No 281
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=55.48 E-value=51 Score=30.43 Aligned_cols=115 Identities=20% Similarity=0.269 Sum_probs=58.5
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCcc----cHHHHHhcCcchhhhhccccCCCCCCCcceeEec---ccccc-
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD----TLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSS---FLLSD- 240 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~----~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~---~v~~~- 240 (309)
+++|+=||.|++...|...+..+ +.++|... +.+.-+.....+.+.+.-. ..+|+.+|++++. .-||.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~--~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~--~~l~~~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEV--VWAVEIDPDACETYKANFPEVICGDITEIDP--SDLPKDVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEE--EEEEESSHHHHHHHHHHHTEEEESHGGGCHH--HHHHHT-SEEEEE---TTTSTT
T ss_pred cEEEEccCccHHHHHHHhcCcEE--EEEeecCHHHHHhhhhccccccccccccccc--ccccccceEEEeccCCceEecc
Confidence 68999999999999999988433 33444432 2333222111222222111 1334358888865 22221
Q ss_pred -----cc-ccCCHHHHHHHHhhcccCCeEEEEEeCH---------HHHHHHHHHHHcCCCeeee
Q 021643 241 -----VT-QRCDIADVAVEMDRILRPGGYVLVQDTL---------EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 241 -----~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~---------~~~~~i~~l~~~l~W~~~~ 289 (309)
.. .+..+-.-+.++-+.+||-- |++ +++ ..++.+.+.+..+...+..
T Consensus 78 g~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~-ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 78 GKRKGFDDPRNSLFFEFLRIVKELKPKY-FLL-ENVPGLLSSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp STHHCCCCHTTSHHHHHHHHHHHHS-SE-EEE-EEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccccccccchhhHHHHHHHhhccceE-EEe-cccceeeccccccccccccccccccceeehh
Confidence 11 22234445555566678843 333 322 3566666777777766543
No 282
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.78 E-value=27 Score=33.35 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=70.6
Q ss_pred CeEEEeCCcc--hHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 168 RNVMDMNASY--GGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 168 r~VLD~GCG~--G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
.+|.=+|.|- |+|+.+|...+. ...|.+.|.+ ..+..+.+.|++..+.. ...--. ...|+|+-+-=+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~---~~~~~~~~~aD~VivavPi----- 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTV---AGLAEAAAEADLVIVAVPI----- 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCccccccc---chhhhhcccCCEEEEeccH-----
Confidence 3566677775 678888888774 4577888887 57888888887543211 111223 678999765222
Q ss_pred cCCHHHHHHHHhhcccCCeEEEE--EeCHHHHHHHHHHHHcCC
Q 021643 244 RCDIADVAVEMDRILRPGGYVLV--QDTLEMINKLKPVLHSLQ 284 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii--~D~~~~~~~i~~l~~~l~ 284 (309)
.....++.|+..-|+||-.+.= +....+++.+++......
T Consensus 75 -~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~ 116 (279)
T COG0287 75 -EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV 116 (279)
T ss_pred -HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC
Confidence 2356789999999999876532 234557777887775544
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=53.99 E-value=8.9 Score=32.10 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=18.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPL 189 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v 189 (309)
....-.|+|||.|-+.--|...|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy 81 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY 81 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC
Confidence 345699999999988766766554
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=53.91 E-value=7.6 Score=36.40 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=40.4
Q ss_pred hhcccchhHHHHHH----HHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCc----
Q 021643 140 AFNKDTTHWYALVS----DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGL---- 211 (309)
Q Consensus 140 ~F~~d~~~W~~~v~----~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRgl---- 211 (309)
+|......++..-. +..++..++..+...+|||.=||.|.=|.-|+..|..| +.+..+..+....+.||
T Consensus 45 DF~~g~~~~R~~~~~g~~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V---~~lErspvia~Ll~dGL~r~~ 121 (234)
T PF04445_consen 45 DFHPGAAAYRRKHGGGKGDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKV---TGLERSPVIAALLKDGLKRAQ 121 (234)
T ss_dssp -SSSHHHHHHHHHSSGGGSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--E---EEEE--HHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHhhcCCCccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeE---EEEECCHHHHHHHHHHHHHHH
Confidence 56665555544321 11233455666544589999999998555444444333 33333322222222222
Q ss_pred ------------chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 212 ------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 212 ------------ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
+..++.-....+..+ ++||+|...=.|.+
T Consensus 122 ~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 122 QDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred hCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 111121111245566 99999998877765
No 285
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=51.83 E-value=29 Score=35.18 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc--------Cc-----chhhhhccccCCCCC-CCc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--------GL-----IGMYHDWCESFNTYP-RTY 229 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR--------gl-----ig~~~d~ce~~lpfP-~sF 229 (309)
.+.|+||=+|-|-|--++.|.+++ .++.|+-+|.. .|++++... |- ..++.|-+-..+-=. +.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 347899999999999999999987 23556555554 466665521 21 111111000012223 789
Q ss_pred ceeEeccccccccccC----CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 230 DLLHSSFLLSDVTQRC----DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~----~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|.|+.. |..-.+.. --+.+-.-..|-|+++|.+++.-.
T Consensus 367 D~vIVD--l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVD--LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEe--CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 999865 21111000 013345556678889999999754
No 286
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=51.10 E-value=36 Score=32.47 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=44.2
Q ss_pred CeEEEeCCcc-hHHHHHhhcC--C-CEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 168 RNVMDMNASY-GGFAAALIDQ--P-LWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~~--~-v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
.+||=.|||. |.++..++++ + ..+ ..++.+ ..++.+.+-+......++.+ ...||+|+=.. .
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~v---i~~~~~~~k~~~a~~~~~~~~~~~~~~-----~~g~d~viD~~-----G 231 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKL---VVFGKHQEKLDLFSFADETYLIDDIPE-----DLAVDHAFECV-----G 231 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcE---EEEeCcHhHHHHHhhcCceeehhhhhh-----ccCCcEEEECC-----C
Confidence 5788899886 5455555542 2 222 222333 34555543222111111111 12478775321 1
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. ......+.+..+.|||||.+++-
T Consensus 232 ~-~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 232 G-RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred C-CccHHHHHHHHHhCcCCcEEEEE
Confidence 0 00234788899999999998874
No 287
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=50.24 E-value=61 Score=30.40 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=45.0
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
.+||=+|||. |.++..+++ .+..++-+ ++.. +.++.+.+.+.+. ..+ .-.+.||+|+-. .
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~--~~~~~~rl~~a~~~~~i~-~~~------~~~~g~Dvvid~--~------ 208 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAV--WETNPRRRDGATGYEVLD-PEK------DPRRDYRAIYDA--S------ 208 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEE--eCCCHHHHHhhhhccccC-hhh------ccCCCCCEEEEC--C------
Confidence 4577778875 667777765 45543222 2333 3344443322211 000 012568887532 1
Q ss_pred CCHHHHHHHHhhcccCCeEEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.-...+.+..+.|||||.+++-
T Consensus 209 -G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 -GDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred -CCHHHHHHHHHhhhcCcEEEEE
Confidence 1123678888999999999864
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=47.22 E-value=33 Score=33.34 Aligned_cols=88 Identities=23% Similarity=0.170 Sum_probs=53.3
Q ss_pred eEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhh-----cccc--CCCCCCCcceeEecccc
Q 021643 169 NVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHD-----WCES--FNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d-----~ce~--~lpfP~sFDlVh~~~v~ 238 (309)
+|+=+|||. |-++..+++ .+. ..|..+|.+ +.++.|.+.+-.....+ .-+. ..+-.+.||+++=..-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga--~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA--SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 899999998 666655555 332 234444666 57888888553111100 0000 1222256888853221
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
...++.++-+++||||.+++.
T Consensus 248 --------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 248 --------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred --------CHHHHHHHHHHhcCCCEEEEE
Confidence 234899999999999999885
No 289
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=46.97 E-value=37 Score=29.45 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCcceeEeccccccc------cccCCHHHHHHHHhhcccCCeEEEEEe------CHHHHHHHHHHHHcCC
Q 021643 227 RTYDLLHSSFLLSDV------TQRCDIADVAVEMDRILRPGGYVLVQD------TLEMINKLKPVLHSLQ 284 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~------~~~~~~~~~L~Em~RVLRPGG~lii~D------~~~~~~~i~~l~~~l~ 284 (309)
+.+|+++-+...-.- .....-..+|...-++|+|||.++|.- -.+..+.+.+.++++.
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 489999887333211 111224578999999999999999863 1345556666666554
No 290
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=46.78 E-value=38 Score=29.76 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=31.3
Q ss_pred CC-CCcceeEecccccccc-----cc-------CCHHHHHHHHhhcccCCeEEEEEe
Q 021643 225 YP-RTYDLLHSSFLLSDVT-----QR-------CDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 225 fP-~sFDlVh~~~v~~~~~-----~~-------~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.. +.||.|+-+ |.|.. .. .-+..++.-..++|+|+|.+.|+-
T Consensus 71 ~~~~~FDrIiFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 71 LKNQRFDRIIFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred ccCCcCCEEEEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 35 999999876 55554 11 125678888999999999999973
No 291
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=46.02 E-value=40 Score=33.14 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc---cHHHHHhcCc------------chhhhhccccCCCCC-CCc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD---TLSIIFDRGL------------IGMYHDWCESFNTYP-RTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~---~l~~a~eRgl------------ig~~~d~ce~~lpfP-~sF 229 (309)
+..+||=+|-|-|++.+.-..+. .+-++.-.+.-. .+..++-+.+ +|.-..+|+ -++ ++|
T Consensus 121 npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~---~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE---DLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH---HhccCCc
Confidence 46889999999999887766653 333333333321 1222222221 232222222 345 999
Q ss_pred ceeEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHH
Q 021643 230 DLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVL 280 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~ 280 (309)
|+|+....= ...+.|. .+.+...+.|-|||||++++... .+++.++++..
T Consensus 197 dVii~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~ 253 (337)
T KOG1562|consen 197 DVIITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFC 253 (337)
T ss_pred eEEEEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhH
Confidence 999864211 1112222 35678889999999999988742 34566666554
No 292
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=44.45 E-value=26 Score=35.54 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhc-CCCEEEEeccc
Q 021643 165 SSVRNVMDMNASYGGFAAALID-QPLWVMNVVPI 197 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~ 197 (309)
.++..|.|+|+|-|.++..|.= ++..|+.|.+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 4577899999999999999874 56555555444
No 293
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=42.12 E-value=56 Score=30.31 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=48.1
Q ss_pred CeEEEeCCc-chHHHHHhhc-CCCEEEEecccCCcccHHHHHhcCcchhhhhccccCC-CCCCCcceeEecccccccccc
Q 021643 168 RNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFN-TYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG-~G~faa~L~~-~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~l-pfP~sFDlVh~~~v~~~~~~~ 244 (309)
.+||-.||| .|..+..+++ .+..+..+... .+.++.+.+.|....+.+-.+... .-++.+|+++... .
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~-~------ 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRS--PDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV-V------ 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-C------
Confidence 578888987 5666666665 45554433322 234555555553111111000000 0115688876421 1
Q ss_pred CCHHHHHHHHhhcccCCeEEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
-...+.++.|.|+++|.++..
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEE
Confidence 123688889999999998865
No 294
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=41.60 E-value=92 Score=28.82 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=47.6
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhh----ccccCCCCCCCcceeEecccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHD----WCESFNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d----~ce~~lpfP~sFDlVh~~~v~~~ 240 (309)
.+||-.|+|. |..++.+++ .+..+ +...+.+ +..+.+.+.|....+.. ..+....-.+.+|+++....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~--- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATG--- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCC---
Confidence 5888888652 555555555 45431 1222222 34556666664211111 00000111267898874311
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
-...+.++.|.|+|+|.++..
T Consensus 236 ------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 236 ------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEE
Confidence 124788999999999999864
No 295
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=40.87 E-value=91 Score=28.64 Aligned_cols=89 Identities=20% Similarity=0.121 Sum_probs=48.5
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhh--hcccc--CCCCCCCcceeEecccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYH--DWCES--FNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~--d~ce~--~lpfP~sFDlVh~~~v~~~ 240 (309)
.+||=+|+|. |.+++.+++ .+.. .|..++.+ +.++.+.+-|...++. +..+. .++-.+.||+++-.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~----- 194 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAA--RVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF----- 194 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC-----
Confidence 4788888864 556666655 4543 12222433 4566777666522111 10000 12222568887532
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.. -...+.+..+.|||||.+++.
T Consensus 195 ~G----~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 195 SG----ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CC----ChHHHHHHHHHhcCCCEEEEe
Confidence 11 133688889999999999864
No 296
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=40.58 E-value=13 Score=34.35 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=48.1
Q ss_pred CeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+-|+|+|+|-++..-+.. .|..+...|. ....+.+. |+. . +..| .+.|. ..-|+|+|-.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk----~a~~a~eN~~v~g~~n~evv~gD----A~~y~fe~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPK----RARLAEENLHVPGDVNWEVVVGD----ARDYDFENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcH----HHHHhhhcCCCCCCcceEEEecc----cccccccccceeHHHHh
Confidence 46899999999765444332 2333333332 22333333 221 1 2222 57788 88999999754
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
=+.+.+.. ...++.-+-.-||-.|.+|
T Consensus 106 DTaLi~E~-qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEK-QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhccc-ccHHHHHHHHHhhcCCccc
Confidence 44333221 2334555555677777765
No 297
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=40.53 E-value=55 Score=26.33 Aligned_cols=46 Identities=28% Similarity=0.453 Sum_probs=28.1
Q ss_pred CCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe----CHHHHHHHHHHHH
Q 021643 222 FNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLH 281 (309)
Q Consensus 222 ~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~ 281 (309)
...++..+|++.++.= +-.|+..+ |.|++++.. ..++.+++.++++
T Consensus 43 ~~~~~~~aDiiv~s~~------------l~~~~~~~--~~~~v~~~~~~~d~~ei~~~l~~~L~ 92 (93)
T COG3414 43 IKALTDGADIIVTSTK------------LADEFEDI--PKGYVVITGNGMDIEEIKQKLLEILK 92 (93)
T ss_pred cccCCCcccEEEEehH------------hhhhcCcC--CCceEEEEcccCCHHHHHHHHHHHHh
Confidence 4556688899988632 33344333 448888764 3556666666654
No 298
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=40.44 E-value=73 Score=29.75 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=49.3
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCcccHHHHHhcCcchhh--h--hccccCCC-CC-CCcceeEeccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMY--H--DWCESFNT-YP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s~~l~~a~eRglig~~--~--d~ce~~lp-fP-~sFDlVh~~~v~~ 239 (309)
.+||-.|+|. |.++..|++ .+..+..++.. ++..+.+.+.|....+ + ++.+.... .+ +.+|+++...
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s--~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~--- 235 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARGARVIVVDID--DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT--- 235 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECC---
Confidence 4788888764 667777766 45555444332 2344555555531111 1 11111111 23 5688886431
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. -...+.++.+.|+++|.++..
T Consensus 236 --g----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 236 --G----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred --C----CHHHHHHHHHHHhcCCEEEEE
Confidence 0 134689999999999998864
No 299
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=40.38 E-value=48 Score=31.65 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=48.5
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhh--h--hccccC--CCCCCCcceeEecccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMY--H--DWCESF--NTYPRTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~--~--d~ce~~--lpfP~sFDlVh~~~v~ 238 (309)
.+||=.|||. |.++..+++ .+.. .|..++.+ ..++++.+-|...++ + ++.+.. ++-.+.+|+|+-. .
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~--~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~--~ 253 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGAS--KIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA--V 253 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC--C
Confidence 5788888864 556666665 3442 13333433 456777666642111 1 111111 1111468877532 1
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. -...+.+..+.|||||.+++.
T Consensus 254 ---g----~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 254 ---G----RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ---C----CHHHHHHHHHHhccCCEEEEE
Confidence 1 123678888999999999875
No 300
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=39.07 E-value=91 Score=30.01 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=44.8
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCcccHHHHHhcCcchhhhhcc-ccCCCCCCCcceeEecccccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWC-ESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~c-e~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
.+||=.|+|. |.++..+++ .+..++-+...+ ......+.+-|...++..-- +......+.+|+|+-. ..
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~-----~g-- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS-NKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDT-----VS-- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-chhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEEC-----CC--
Confidence 4677789875 556666665 454433222221 12234444555421111000 0000001247777532 11
Q ss_pred CCHHHHHHHHhhcccCCeEEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
-...+.+..+.|||||.++..
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEe
Confidence 123688899999999998864
No 301
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=36.65 E-value=86 Score=31.60 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCcceeEec--cccccccccCCHH----HHHHHHhhcccCCeEEEEEeCHHHHHHH
Q 021643 227 RTYDLLHSS--FLLSDVTQRCDIA----DVAVEMDRILRPGGYVLVQDTLEMINKL 276 (309)
Q Consensus 227 ~sFDlVh~~--~v~~~~~~~~~~~----~~L~Em~RVLRPGG~lii~D~~~~~~~i 276 (309)
+.||+|+|+ +-.. +.+...++ .+..+|.|.++--+.++++.+.+....+
T Consensus 298 ~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~~ 352 (381)
T COG0116 298 EEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFCL 352 (381)
T ss_pred CcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHHHHHHH
Confidence 899999998 2221 11212222 3455677777777888888777654443
No 302
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.30 E-value=3.6e+02 Score=25.84 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.0
Q ss_pred EEEeCCcchHHHHHhhcCCCE
Q 021643 170 VMDMNASYGGFAAALIDQPLW 190 (309)
Q Consensus 170 VLD~GCG~G~faa~L~~~~v~ 190 (309)
|+|+=||.|++...|...+..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~ 21 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK 21 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe
Confidence 689999999999999887743
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=36.22 E-value=90 Score=27.37 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=49.1
Q ss_pred CCeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCcccHHHHHhcCcchhhhh----ccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHD----WCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s~~l~~a~eRglig~~~d----~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+||..|+|. |..++.++. .+..+..+... ....+.+.+.|....+.. ..+...... +.||+++.. ..
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~--~~ 210 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS--DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA--VG 210 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC--HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC--CC
Confidence 46899999985 666666655 45443333222 134455555543111110 000000123 679998743 11
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ...+....+.|+++|.++...
T Consensus 211 ---~----~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 211 ---G----PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ---C----HHHHHHHHHhcccCCEEEEEc
Confidence 1 136777889999999998764
No 304
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=34.59 E-value=17 Score=32.26 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred CeEEEeCCcchHHHHHhhc----CCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccc
Q 021643 168 RNVMDMNASYGGFAAALID----QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~----~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~ 242 (309)
.-|||+|=|.|..=-.|.+ +.++|++-+-...++..+- .++-+.|.+.+--.. +++- ..--++|+..-..+-.
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~-~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~G~g~~~ 107 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPP-EEDLILGDIRETLPA-LARFGAGAALAHADIGTGDKE 107 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHHHHH-HHHH-S-EEEEEE----S-HH
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCc-hHheeeccHHHHhHH-HHhcCCceEEEEeecCCCCcc
Confidence 4699999999987777765 5688876321111111110 122223333321111 3333 6677888876554322
Q ss_pred ccCCHHH-HHHHHhhcccCCeEEEEEeCHH
Q 021643 243 QRCDIAD-VAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 243 ~~~~~~~-~L~Em~RVLRPGG~lii~D~~~ 271 (309)
.+..... +=-=|..+|.|||+++-.+..+
T Consensus 108 ~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 108 KDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred hhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 1111112 2234688999999988765544
No 305
>PLN02827 Alcohol dehydrogenase-like
Probab=33.93 E-value=68 Score=31.18 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=46.9
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhh--h----hccccCCCC-CCCcceeEeccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMY--H----DWCESFNTY-PRTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~--~----d~ce~~lpf-P~sFDlVh~~~v 237 (309)
.+||=.|+|. |.++..+++ .++. .|..++.+ ..++++.+-|....+ + ++.+...-. ++.+|+|+-.
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~--~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~-- 270 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGAS--QIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC-- 270 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC--
Confidence 5788888865 555555555 4542 12333433 456677666652111 1 111100001 1357877532
Q ss_pred cccccccCCHHHHHHHHhhcccCC-eEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPG-GYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPG-G~lii~ 267 (309)
. .-...+.+..+.|||| |.+++-
T Consensus 271 ---~----G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 271 ---V----GDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred ---C----CChHHHHHHHHhhccCCCEEEEE
Confidence 1 1123577888899999 999863
No 306
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=32.46 E-value=1e+02 Score=32.13 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCeEEEeCCcchHHHHH-hhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccc--------------c-----CCC
Q 021643 167 VRNVMDMNASYGGFAAA-LID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCE--------------S-----FNT 224 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~-L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce--------------~-----~lp 224 (309)
..+|+=+|||.-|.++. .++ .|. .|..+|.. +.++.+.+-|......+..+ . ...
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 57899999999665543 333 454 35556665 46677766554210000000 0 001
Q ss_pred C-C--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 225 Y-P--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 225 f-P--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
| . +.+|+|+.......-+ ...-+..|+-+.+||||.++..
T Consensus 242 ~~~~~~gaDVVIetag~pg~~---aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKP---APKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHhccCCCCEEEECCCCCccc---CcchHHHHHHHhcCCCCEEEEE
Confidence 1 1 4699998764432111 1112459999999999998764
No 307
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=32.41 E-value=32 Score=31.74 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCeEEEeCCcchHHHHHhhc
Q 021643 167 VRNVMDMNASYGGFAAALID 186 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~ 186 (309)
.-+|+++|+|.|.++..+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHH
Confidence 35899999999999988875
No 308
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=31.85 E-value=1.2e+02 Score=28.24 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=47.1
Q ss_pred CCeEEEeCCcc-hHHHHHhhc-CCC-EEEEecccCCc-ccHHHHHhcCcchhhhhccc--cCCC-CCCCcceeEeccccc
Q 021643 167 VRNVMDMNASY-GGFAAALID-QPL-WVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCE--SFNT-YPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~-G~faa~L~~-~~v-~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce--~~lp-fP~sFDlVh~~~v~~ 239 (309)
..+||-.|||. |.++..+++ .++ .+. .++.+ +..+.+.+.|...++..-.+ ..+. ..+.||+++.....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~---~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~- 241 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIV---ATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA- 241 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEE---EECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC-
Confidence 46788888765 556555655 454 332 22333 34455555553111110000 0111 12458888643111
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
...+.++.+.|+++|.++.-
T Consensus 242 --------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 242 --------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred --------HHHHHHHHHHHhcCCEEEEE
Confidence 23688999999999999864
No 309
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=30.29 E-value=62 Score=32.46 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=17.5
Q ss_pred CCeEEEeCCcchHHHHHhhc
Q 021643 167 VRNVMDMNASYGGFAAALID 186 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~ 186 (309)
...++.+|+|.|.++..++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred CceEEEeCCCcChHHHHHHH
Confidence 45799999999999988875
No 310
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.92 E-value=64 Score=31.41 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.4
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.++.+|..+-.+|+|||.+++..-.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4788999999999999998887644
No 311
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=28.80 E-value=86 Score=30.72 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=56.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccccc-ccCC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT-QRCD 246 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~-~~~~ 246 (309)
++||=+|--...|...|....+.+. -.+.+.........|....++. +...+.+..||+|+. .++ .+..
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~~~~d~~~~-----~~pk~k~~ 90 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAASVRVH---TQQFHHWQVLSRQMGDNARFSL--VATAEDVADCDTLIY-----YWPKNKQE 90 (342)
T ss_pred CcEEEEcCcchhhHHhhhccceEEe---hhhhHHHHHHHhhcCCceEecc--ccCCccCCCCCEEEE-----ECCCCHHH
Confidence 5788888888888887763322221 1122211111111121111110 111233378998853 233 3344
Q ss_pred HHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcC
Q 021643 247 IADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSL 283 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l 283 (309)
.+..|.++.+.|+|||.+++.-. .+-++.+.++++..
T Consensus 91 ~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~ 128 (342)
T PRK09489 91 AQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADY 128 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHh
Confidence 66789999999999999888744 34455555555443
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=28.47 E-value=69 Score=30.78 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=47.4
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhh----hccccCCCC-CCCcceeEeccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYH----DWCESFNTY-PRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~----d~ce~~lpf-P~sFDlVh~~~v~~ 239 (309)
.+||=.|+|. |.++..+++ .+.. .|..++.+ +.++++.+-|...++. ++.+..... ++.+|+|+-..
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~--- 267 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGAS--QVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA--- 267 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC---
Confidence 4666688864 556666665 4441 12333443 4566776666422111 111110111 13578775321
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. -...+.+..+.|||||.+++.
T Consensus 268 --G----~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 268 --G----SVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred --C----ChHHHHHHHHHHhcCCEEEEE
Confidence 1 123688888999999998874
No 313
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=26.18 E-value=68 Score=30.52 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=58.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh---c-Ccc--hhhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD---R-GLI--GMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e---R-gli--g~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
...+|+|+|||.==++.......-- ....+.|.. .++++... . |.. ..+.| ...-=| .+.|+.+.--+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~D---l~~~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRD---LLSDPPKEPADLALLLKT 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE----TTTSHTTSEESEEEEET-
T ss_pred CCchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCCCcceeEee---eeccCCCCCcchhhHHHH
Confidence 3689999999999998877664311 134556665 33333321 1 211 11122 112224 88999987555
Q ss_pred ccccc-ccCCH-HHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHHHHHcCCCeeee
Q 021643 238 LSDVT-QRCDI-ADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 238 ~~~~~-~~~~~-~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~~~ 289 (309)
++-+. ++.+. .++|.+++ .=.++++-.. .+...++..+..=.|++.-
T Consensus 181 lp~le~q~~g~g~~ll~~~~-----~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALR-----SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSC-----ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHhcchHHHHHHHhC-----CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence 54332 11222 23333332 2356666431 2567788888888887543
No 314
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=25.90 E-value=57 Score=30.91 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=17.7
Q ss_pred CCeEEEeCCcchHHHHHhhc
Q 021643 167 VRNVMDMNASYGGFAAALID 186 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~ 186 (309)
...++++|||.|.++.+++.
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred CCEEEEECCCchHHHHHHHH
Confidence 45899999999999988875
No 315
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=25.60 E-value=1.9e+02 Score=26.94 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=45.1
Q ss_pred CeEEEeCCc-chHHHHHhhc-CCC-EEEEecccCCc-ccHHHHHhcCcchhh--h--hccccCCC-CC-CCcceeEeccc
Q 021643 168 RNVMDMNAS-YGGFAAALID-QPL-WVMNVVPIDAP-DTLSIIFDRGLIGMY--H--DWCESFNT-YP-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG-~G~faa~L~~-~~v-~v~~V~p~d~s-~~l~~a~eRglig~~--~--d~ce~~lp-fP-~sFDlVh~~~v 237 (309)
.+||-.|+| .|.++..+++ .+. .+..+ +.+ .....+.+-|...++ + ++.+.... .+ +.||+++-.
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~---~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~-- 243 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAV---DSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA-- 243 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE---eCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc--
Confidence 477887765 3556655655 343 23222 222 334444444421111 1 11111111 23 678988642
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.. -...+.++.+.|+++|.++..
T Consensus 244 ~g-------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 VG-------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 11 013789999999999998864
No 316
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=25.15 E-value=1.4e+02 Score=29.13 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=33.5
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
-++.|.+..+ ..++|.=+|.||-+.++++.--. ..|.++|.. .++..+.++
T Consensus 12 vl~~L~~~~g--giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 12 VVEGLNIKPD--GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred HHHhcCcCCC--CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 3444544433 47999999999999988874111 246667776 566666554
No 317
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.67 E-value=1.3e+02 Score=30.57 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=53.6
Q ss_pred CCCeEEEeCCc-chHH-HHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccc-cc
Q 021643 166 SVRNVMDMNAS-YGGF-AAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSD-VT 242 (309)
Q Consensus 166 ~~r~VLD~GCG-~G~f-aa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~-~~ 242 (309)
...+||=+|+| .|.. +.+|..+++..+-|.........+.|.+-|. .+... +....|=+.+|+|+++..=.| .-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~--~~~~l-~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA--EAVAL-EELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC--eeecH-HHHHHhhhhCCEEEEecCCCcccc
Confidence 35789999999 7764 5677788877667777766556666666662 12111 011223378999999855444 33
Q ss_pred ccCCHHHHHHHHhh
Q 021643 243 QRCDIADVAVEMDR 256 (309)
Q Consensus 243 ~~~~~~~~L~Em~R 256 (309)
....++.++..-+|
T Consensus 254 ~~~~ve~a~~~r~~ 267 (414)
T COG0373 254 TREMVERALKIRKR 267 (414)
T ss_pred CHHHHHHHHhcccC
Confidence 33445555555444
No 318
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.65 E-value=1.6e+02 Score=28.68 Aligned_cols=111 Identities=12% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCCeEEEeCCcc--hHHHHHhhcCCCEEE--EecccCCcc---cH----HHHHhcCcchhhhhccccCCCCCCCc-cee-
Q 021643 166 SVRNVMDMNASY--GGFAAALIDQPLWVM--NVVPIDAPD---TL----SIIFDRGLIGMYHDWCESFNTYPRTY-DLL- 232 (309)
Q Consensus 166 ~~r~VLD~GCG~--G~faa~L~~~~v~v~--~V~p~d~s~---~l----~~a~eRglig~~~d~ce~~lpfP~sF-DlV- 232 (309)
.+++|-=+|+|+ .++|+.++..|..|. ++.|..... .+ +...++|+.. +-...++.+-.++ |.+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAP---GASPARLRFVATIEACVA 82 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHhhceecCCHHHHhc
Confidence 467888899996 457777777765432 332221111 11 1111223211 0001123332333 222
Q ss_pred EeccccccccccCC-HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHc
Q 021643 233 HSSFLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHS 282 (309)
Q Consensus 233 h~~~v~~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~ 282 (309)
-|..+++..+++-+ ...++.|++++++|+- ++-+.+... .+.+++..
T Consensus 83 ~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l--~~s~la~~ 130 (321)
T PRK07066 83 DADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL--LPTDFYAR 130 (321)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc--CHHHHHHh
Confidence 33445555554433 3467899999999987 444443332 34444443
No 319
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=24.55 E-value=82 Score=30.46 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.9
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
.++.+|.....+|+|||.+++..-..
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 47889999999999999988876543
No 320
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=24.28 E-value=1.8e+02 Score=28.23 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=57.2
Q ss_pred CCeEEEeCCcchHHHHHhhc----CCCEEEEecccCCc-ccH----HHHHhc--Cc--chhhhhccccCCCCCC--Ccce
Q 021643 167 VRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTL----SIIFDR--GL--IGMYHDWCESFNTYPR--TYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~----~~v~v~~V~p~d~s-~~l----~~a~eR--gl--ig~~~d~ce~~lpfP~--sFDl 231 (309)
..+..|+|.|+-.=++.|.+ ++. ....+|+|.+ .-| ..+... ++ .+...|.|.+.-..|+ .==+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 56899999999887766654 332 3457788887 222 222222 22 3555566553222221 1111
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++-...+-.+.+ .+-..+|..+.-.|+||-+|.+-
T Consensus 158 ~flGStlGN~tp-~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTP-GECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCCh-HHHHHHHHHHHhcCCCcceEEEe
Confidence 222233444432 22345899999999999999985
No 321
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=24.17 E-value=1.3e+02 Score=28.12 Aligned_cols=89 Identities=16% Similarity=0.012 Sum_probs=46.3
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhh--hhc-ccc--CCCCCCCcceeEeccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMY--HDW-CES--FNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~--~d~-ce~--~lpfP~sFDlVh~~~v~~ 239 (309)
.+||=.|+|. |.++..+++ .+.. .|..++.+ +.++.+.+-|...++ ++- .+. .+.-.+.||+|+-..
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~--~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~--- 239 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAE--DVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS--- 239 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC---
Confidence 4677778764 445555554 4433 13333333 355666666642111 110 000 011124688886321
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. -...+.+..+.|+++|.+++.
T Consensus 240 --g----~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 --G----NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred --C----CHHHHHHHHHHhhcCCEEEEE
Confidence 1 123567888999999999864
No 322
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=24.12 E-value=84 Score=30.73 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.0
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCHHHHHH
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTLEMINK 275 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~~~~~~ 275 (309)
.++.+|..+..+|+|||.+++..-...-++
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLEDR 248 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLEDR 248 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchhhH
Confidence 478899999999999999988776554333
No 323
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=23.18 E-value=2.9e+02 Score=25.74 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=46.1
Q ss_pred EEEeCCcc--hHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCCCCcceeEeccccccccccCC
Q 021643 170 VMDMNASY--GGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCD 246 (309)
Q Consensus 170 VLD~GCG~--G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~ 246 (309)
|.=+|+|. |+++.+|.+.+.. |...|.+ +.++.+.++|.+....+ ....-...|+|+... +. ..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~---V~~~d~~~~~~~~a~~~g~~~~~~~----~~~~~~~aDlVilav-----p~-~~ 69 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHT---VYGVSRRESTCERAIERGLVDEAST----DLSLLKDCDLVILAL-----PI-GL 69 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHCCCcccccC----CHhHhcCCCEEEEcC-----CH-HH
Confidence 44468875 5688888887653 3444444 45677777775422111 011115578876542 21 23
Q ss_pred HHHHHHHHhhcccCCe
Q 021643 247 IADVAVEMDRILRPGG 262 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG 262 (309)
..+++.++...++|+-
T Consensus 70 ~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 70 LLPPSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 4567888888888774
No 324
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=23.15 E-value=1.5e+02 Score=28.88 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCCcceeEecccccccc-ccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHcCCCee
Q 021643 226 PRTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 226 P~sFDlVh~~~v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~ 287 (309)
|+.||++.. .++ ++...+..|.++.+.|.|||.+++. +..+-+..+++++.+.-+..
T Consensus 35 ~~~~d~~l~-----~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~ 93 (300)
T COG2813 35 PDDFDAVLL-----YWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPT 93 (300)
T ss_pred cCCCCEEEE-----EccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCcc
Confidence 367888753 232 4456788999999999999988886 44456666666665555543
No 325
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.05 E-value=1e+02 Score=30.31 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.0
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
.++.+|.-.-++|+|||++++.....
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 47889999999999999988876543
No 326
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=22.87 E-value=2e+02 Score=23.59 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=54.8
Q ss_pred EEeCCcc-hH-HHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccc-------cCCC--CC-CCcceeEecccc
Q 021643 171 MDMNASY-GG-FAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCE-------SFNT--YP-RTYDLLHSSFLL 238 (309)
Q Consensus 171 LD~GCG~-G~-faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce-------~~lp--fP-~sFDlVh~~~v~ 238 (309)
+=+|+|. |. +|.+|.+.+..| .-+.-++.++...++|+.-...+ .+ .... .. ..||+|+...
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V---~l~~r~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~v-- 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDV---TLVSRSPRLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAV-- 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEE---EEEESHHHHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-S--
T ss_pred EEECcCHHHHHHHHHHHHCCCce---EEEEccccHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEe--
Confidence 4467775 54 566665655432 22222234555677776211111 00 0111 24 8899987641
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHH
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVL 280 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~ 280 (309)
+ .-+.+.++..+.+.+.|+..+++.- -....+.+++..
T Consensus 76 ---K-a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 76 ---K-AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp ---S-GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred ---c-ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 1 1236779999999999997776653 345555555544
No 327
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=22.73 E-value=2.6e+02 Score=26.27 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=53.4
Q ss_pred CCeEEEeCCcc-h-HHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccc
Q 021643 167 VRNVMDMNASY-G-GFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~-G-~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~ 242 (309)
..+|.=+|+|. | .++..|...+. ...|...|.+ +.++.+.+.|+.....+ ...-. +..|+|+... +
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~~----~~~~~~~~aDvViiav-----p 75 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVTT----SAAEAVKGADLVILCV-----P 75 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceecC----CHHHHhcCCCEEEECC-----C
Confidence 35788889887 3 46666766653 1123334444 35566666665321111 01111 5678886542 1
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHH
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKP 278 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~ 278 (309)
. .....++.++...++||+.++..-. .+.++.+.+
T Consensus 76 ~-~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~ 112 (307)
T PRK07502 76 V-GASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAP 112 (307)
T ss_pred H-HHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHH
Confidence 1 1245577888788899986654322 334444433
No 328
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=22.58 E-value=1.6e+02 Score=28.79 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=44.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
....+|.=-|.||-+.++++. +- ..+.++|-- .+++.+.++ ..+|.+.|-++|++ |+
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~--~~li~~DrD~~a~~~a~~~------------l~~~~~r~~~~~~~--F~----- 79 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPN--GRLIGIDRDPEALERAKER------------LKKFDDRFIFIHGN--FS----- 79 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT---EEEEEES-HHHHHHHHCC------------TCCCCTTEEEEES---GG-----
T ss_pred CceEEeecCCcHHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHH------------HhhccceEEEEecc--HH-----
Confidence 458999999999999998874 32 346666665 567776544 23455677777776 33
Q ss_pred CCHHHHHHHHhhcccCCeEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~li 265 (309)
++...|.+...+=+..|.++
T Consensus 80 -~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 80 -NLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp -GHHHHHHHTTTTS-EEEEEE
T ss_pred -HHHHHHHHccCCCccCEEEE
Confidence 23445555533334455443
No 329
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=22.58 E-value=1.5e+02 Score=27.84 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHH----HHhcCc--------c--hhhhhcccc--CCCCC-CCc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSI----IFDRGL--------I--GMYHDWCES--FNTYP-RTY 229 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~----a~eRgl--------i--g~~~d~ce~--~lpfP-~sF 229 (309)
.+.|+.+|||.=..+-.|.... .+.+.-+|.++++++ ..+.|. + ....+|.+. ...|. ..-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 6789999999988887775432 124556677754332 222111 1 111345442 12354 445
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
=++++-+++.+++. .+...+|..+.+..-||+.+++.
T Consensus 160 tl~i~EGvl~YL~~-~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 160 TAWLWEGLLMYLTE-EAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred eeeeecchhhcCCH-HHHHHHHHHHHHhCCCCcEEEEE
Confidence 57777788877753 45778999999988899998886
No 330
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=21.95 E-value=4.6e+02 Score=24.11 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=45.1
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.+||=.|||. |.++..+++ .+..+..+...+ +..+.+.+-|....+.. ...+ +.+|+++.. ..
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~--~~~~~~~~~g~~~~~~~-----~~~~~~~vD~vi~~---~~---- 234 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSG--EHQELARELGADWAGDS-----DDLPPEPLDAAIIF---AP---- 234 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh--HHHHHHHHhCCcEEecc-----CccCCCcccEEEEc---CC----
Confidence 3555567653 334444444 455544443332 34455544453111111 1124 678877532 10
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEe
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
....+.++.|.|+++|.+++..
T Consensus 235 --~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 --VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred --cHHHHHHHHHHhhcCCEEEEEc
Confidence 1237899999999999998753
No 331
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=21.49 E-value=1.2e+02 Score=26.62 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=24.6
Q ss_pred CCCC--CCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 222 FNTY--PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 222 ~lpf--P~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..|+ +++.|+++|..-. .+.....-|||||++++...
T Consensus 59 ~~~~~~~~~~D~lva~d~~-----------~~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 59 SSPLIPEGQADLLLALEPA-----------EVARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCccCCCCCCEEEEcCHH-----------HHHHHHhhcCCCcEEEEECC
Confidence 4566 3899999875322 22334456999999988753
No 332
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=21.33 E-value=2.7e+02 Score=24.91 Aligned_cols=86 Identities=20% Similarity=0.117 Sum_probs=47.0
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCc-chhhhhccccCCCCC-CCcceeEecccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~ 242 (309)
.+||=.|||. |..+..+++ .+.. .+..++.+ +.+..+.+.|. ...... .+ .. .+ +.+|+++-...
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~~-~~-~~-~~~~~~d~vl~~~~----- 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAAD-TA-DE-IGGRGADVVIEASG----- 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCcccccc-ch-hh-hcCCCCCEEEEccC-----
Confidence 5677778765 555555554 4543 12333433 35567666662 111110 01 11 13 66888864211
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
....+.+..+.|+++|.++..
T Consensus 169 ----~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 ----SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ----ChHHHHHHHHHhcCCcEEEEE
Confidence 123688899999999998864
No 333
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.27 E-value=2.4e+02 Score=25.99 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=17.2
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.....|.-...++.||+|+|+-|..
T Consensus 125 hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 125 HVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHHHhCccCCCCCEEEEEecc
Confidence 3556677788999999999998863
No 334
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.17 E-value=3.8e+02 Score=25.77 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=61.8
Q ss_pred eEEEeCCcc--hHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhh-h----ccc-cCCCCC-CCcceeEeccccc
Q 021643 169 NVMDMNASY--GGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH-D----WCE-SFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 169 ~VLD~GCG~--G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~-d----~ce-~~lpfP-~sFDlVh~~~v~~ 239 (309)
+|+=+|||. |.||++|.+.+ ....+... ++.++...+.|+.-.-. . -+. ...+-. ..+|+|+..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R--~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~---- 74 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVR--SRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT---- 74 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEec--HHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEE----
Confidence 466678885 45788888877 32222222 23467777788721110 0 000 011222 567877643
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEE-EeCHHHHHHHHHHHHcC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLV-QDTLEMINKLKPVLHSL 283 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii-~D~~~~~~~i~~l~~~l 283 (309)
.+ .-+.+.++..+.++++|.-.+++ .+-...++.++++..+-
T Consensus 75 -vK-a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 75 -VK-AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred -ec-cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 22 22478899999999999986554 45566666777765443
No 335
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=20.85 E-value=7.1e+02 Score=23.42 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=76.1
Q ss_pred eEEEeCCcchHHHHHhhcCCC--EEEEecccCCc--ccHHHHHhcCcchhhhhccc-cCCCCC--CCcceeEeccccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPL--WVMNVVPIDAP--DTLSIIFDRGLIGMYHDWCE-SFNTYP--RTYDLLHSSFLLSDV 241 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v--~v~~V~p~d~s--~~l~~a~eRglig~~~d~ce-~~lpfP--~sFDlVh~~~v~~~~ 241 (309)
++.|+||-.|.+..+|.+.+. .+++..=++.+ .........++.......+. -+.++- ..+|.++..++=-.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG~- 97 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGGT- 97 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcHH-
Confidence 399999999999999998763 22222222222 23344444455221111111 145554 48999877643321
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee---c-----ceEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY---H-----DQFLVGKKG 300 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~---~-----e~~li~~K~ 300 (309)
-+..+|.|-...|+-==++|+.-.. -...+++-+....|+...+ . -.++++.|.
T Consensus 98 ----lI~~ILee~~~~l~~~~rlILQPn~-~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 98 ----LIREILEEGKEKLKGVERLILQPNI-HTYELREWLSANSYEIKAETILEEDGKIYEILVVEKS 159 (226)
T ss_pred ----HHHHHHHHhhhhhcCcceEEECCCC-CHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecC
Confidence 2567888888888754466665332 2457889999999988766 2 246788776
No 336
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.48 E-value=2.2e+02 Score=27.98 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
-++.|.+.++ ...+|.==|.||-+.++.++..-.-.+.++|.- +++++|.++
T Consensus 15 ~i~~L~~~~~--giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 15 VVELLAPKPD--GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred HHHhcccCCC--cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 4445555443 689999999999999998753222235666665 577777665
No 337
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=20.44 E-value=2.2e+02 Score=27.73 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=44.9
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCcccHHHHHhcCcchhhhhc-cccCCCCCCCcceeEecccccccccc
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDW-CESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~-ce~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
.+||=.|+|. |.+++.+++ .+..++.+...+ ....+++.+-|...++..- -+......+.+|+|+-. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~-----~G-- 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS-EKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDT-----VS-- 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh-HHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEEC-----CC--
Confidence 4677778764 556666665 455443332221 1224555555542111100 00000001247777532 11
Q ss_pred CCHHHHHHHHhhcccCCeEEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
-...+.+..+.|||||.++..
T Consensus 252 --~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 252 --AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred --cHHHHHHHHHhhcCCCEEEEE
Confidence 123678888999999998864
No 338
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=20.26 E-value=37 Score=27.98 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=11.6
Q ss_pred EEEeCCcchHHH-HHhhc
Q 021643 170 VMDMNASYGGFA-AALID 186 (309)
Q Consensus 170 VLD~GCG~G~fa-a~L~~ 186 (309)
-+|+|||.|... +.+..
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 369999999754 44443
Done!