BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021644
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
          Length = 458

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 21/73 (28%)

Query: 84  PFWLALYVEGTRFTEAK----------------LLAAQEYALSRGLPIPRNVLIPRTKGF 127
           P WL ++VEGT+FT  K                L+A ++Y ++    +PRN L+     F
Sbjct: 245 PHWL-IFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVN----LPRNKLVYSPHVF 299

Query: 128 VSAVNNMRSFVPA 140
              V N   F PA
Sbjct: 300 GPDVYNQPYFGPA 312


>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
           From The Archaeon Pyrococcus Horikoshii
 pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
           From The Archaeon Pyrococcus Horikoshii
 pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
           From The Archaeon Pyrococcus Horikoshii
          Length = 458

 Score = 28.1 bits (61), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 21/73 (28%)

Query: 84  PFWLALYVEGTRFTEAK----------------LLAAQEYALSRGLPIPRNVLIPRTKGF 127
           P WL ++VEGT+FT  K                L+A ++Y ++    +PRN L+     +
Sbjct: 245 PHWL-IFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVN----LPRNKLVYSPHVY 299

Query: 128 VSAVNNMRSFVPA 140
              V N   F PA
Sbjct: 300 GPDVYNQPYFGPA 312


>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
           E201a-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
           E201a-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
           E201a-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
          Length = 458

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 21/73 (28%)

Query: 84  PFWLALYVEGTRFTEAK----------------LLAAQEYALSRGLPIPRNVLIPRTKGF 127
           P WL ++VEGT+FT  K                L+A ++Y ++    +PRN L+     +
Sbjct: 245 PHWL-IFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVN----LPRNKLVYSPHVY 299

Query: 128 VSAVNNMRSFVPA 140
              V N   F PA
Sbjct: 300 GPDVYNQPYFGPA 312


>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
           E342a-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
           E342a-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
           E342a-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
          Length = 458

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 21/73 (28%)

Query: 84  PFWLALYVEGTRFTEAK----------------LLAAQEYALSRGLPIPRNVLIPRTKGF 127
           P WL ++VEGT+FT  K                L+A ++Y ++    +PRN L+     +
Sbjct: 245 PHWL-IFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVN----LPRNKLVYSPHVY 299

Query: 128 VSAVNNMRSFVPA 140
              V N   F PA
Sbjct: 300 GPDVYNQPYFGPA 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,607,796
Number of Sequences: 62578
Number of extensions: 327360
Number of successful extensions: 534
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 7
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)