Query 021645
Match_columns 309
No_of_seqs 149 out of 876
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 2.7E-39 5.8E-44 282.0 29.0 290 2-307 1-309 (311)
2 KOG3894 SNARE protein Syntaxin 100.0 3E-36 6.6E-41 267.2 30.6 289 5-309 1-315 (316)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.3E-32 2.9E-37 241.5 22.9 275 3-304 1-297 (305)
4 KOG0810 SNARE protein Syntaxin 100.0 5.6E-28 1.2E-32 218.6 22.1 246 42-305 33-285 (297)
5 KOG0811 SNARE protein PEP12/VA 99.9 2.8E-20 6E-25 165.8 26.7 240 43-305 15-259 (269)
6 COG5325 t-SNARE complex subuni 99.9 8E-20 1.7E-24 159.9 24.8 247 38-305 27-274 (283)
7 COG5074 t-SNARE complex subuni 99.8 2.7E-16 6E-21 134.1 21.7 221 45-289 21-248 (280)
8 PF10496 Syntaxin-18_N: SNARE- 99.4 1.7E-12 3.6E-17 97.8 6.8 80 5-86 1-87 (87)
9 PF05739 SNARE: SNARE domain; 99.3 2.2E-11 4.8E-16 85.9 9.9 63 223-285 1-63 (63)
10 cd00193 t_SNARE Soluble NSF (N 99.1 2.7E-10 5.9E-15 79.1 8.2 59 222-280 2-60 (60)
11 smart00397 t_SNARE Helical reg 99.0 4.2E-09 9.1E-14 74.4 9.1 62 219-280 5-66 (66)
12 KOG3202 SNARE protein TLG1/Syn 98.3 0.00075 1.6E-08 59.6 24.6 87 222-308 148-234 (235)
13 PF00804 Syntaxin: Syntaxin; 98.2 3.4E-05 7.5E-10 59.1 12.2 96 44-149 2-103 (103)
14 smart00503 SynN Syntaxin N-ter 98.2 6.1E-05 1.3E-09 59.3 13.5 107 44-162 3-115 (117)
15 cd00179 SynN Syntaxin N-termin 97.9 0.00077 1.7E-08 55.6 15.0 113 44-167 1-119 (151)
16 KOG3385 V-SNARE [Intracellular 97.2 0.004 8.7E-08 48.3 9.3 77 209-297 29-105 (118)
17 PF00957 Synaptobrevin: Synapt 96.8 0.06 1.3E-06 40.3 12.4 46 226-271 3-48 (89)
18 KOG1666 V-SNARE [Intracellular 96.5 0.45 9.7E-06 41.2 23.7 101 204-308 117-217 (220)
19 PF11416 Sed5p: Integral membr 96.3 0.0015 3.3E-08 37.8 0.6 21 1-21 1-21 (29)
20 KOG3208 SNARE protein GS28 [In 95.8 1.2 2.6E-05 38.8 22.7 217 45-309 8-231 (231)
21 KOG0860 Synaptobrevin/VAMP-lik 95.7 0.28 6E-06 38.4 11.1 40 226-265 29-68 (116)
22 PF03908 Sec20: Sec20; InterP 95.6 0.48 1E-05 35.7 12.1 62 246-307 28-89 (92)
23 PF09177 Syntaxin-6_N: Syntaxi 95.0 0.7 1.5E-05 35.1 11.3 96 45-148 1-96 (97)
24 KOG0810 SNARE protein Syntaxin 94.4 4.1 8.9E-05 37.6 20.3 64 218-281 205-268 (297)
25 PF09753 Use1: Membrane fusion 93.8 1.4 2.9E-05 39.6 12.2 55 225-282 169-223 (251)
26 PF14523 Syntaxin_2: Syntaxin- 93.5 2.5 5.5E-05 32.0 12.3 95 51-164 5-99 (102)
27 KOG0811 SNARE protein PEP12/VA 93.0 6.8 0.00015 35.6 24.6 86 219-308 180-265 (269)
28 COG5325 t-SNARE complex subuni 93.0 2.5 5.4E-05 38.1 12.2 85 219-307 195-280 (283)
29 KOG3251 Golgi SNAP receptor co 92.6 6.5 0.00014 34.2 23.2 62 247-308 150-212 (213)
30 COG5074 t-SNARE complex subuni 90.9 5.4 0.00012 35.2 11.5 72 224-297 190-261 (280)
31 PF12352 V-SNARE_C: Snare regi 90.6 4.3 9.4E-05 28.2 10.0 57 227-283 9-65 (66)
32 KOG3065 SNAP-25 (synaptosome-a 86.7 3.7 7.9E-05 37.4 8.1 54 226-279 218-271 (273)
33 PF09889 DUF2116: Uncharacteri 85.5 2.2 4.9E-05 29.3 4.7 35 274-308 25-59 (59)
34 KOG3850 Predicted membrane pro 77.3 68 0.0015 30.5 14.3 55 219-273 299-354 (455)
35 PF05478 Prominin: Prominin; 73.0 34 0.00073 36.2 10.9 55 227-283 358-412 (806)
36 KOG4812 Golgi-associated prote 72.7 3.1 6.7E-05 36.8 2.6 22 288-309 222-243 (262)
37 PF10046 BLOC1_2: Biogenesis o 68.9 49 0.0011 25.1 10.1 56 207-266 23-78 (99)
38 smart00806 AIP3 Actin interact 68.3 1.2E+02 0.0026 29.4 15.3 114 45-162 213-329 (426)
39 KOG3065 SNAP-25 (synaptosome-a 63.9 71 0.0015 29.1 9.6 52 228-279 81-132 (273)
40 PF09125 COX2-transmemb: Cytoc 63.7 12 0.00026 22.9 3.1 20 288-307 14-33 (38)
41 PHA03054 IMV membrane protein; 63.5 6.3 0.00014 27.9 2.1 16 284-299 43-58 (72)
42 PHA02844 putative transmembran 63.2 6.4 0.00014 28.2 2.2 14 286-299 45-58 (75)
43 PHA02650 hypothetical protein; 62.9 4.7 0.0001 29.2 1.5 15 284-298 44-58 (81)
44 PHA02819 hypothetical protein; 62.5 6.7 0.00015 27.8 2.1 16 284-299 41-56 (71)
45 PHA02975 hypothetical protein; 59.8 6.6 0.00014 27.7 1.7 15 285-299 40-54 (69)
46 PF10779 XhlA: Haemolysin XhlA 59.4 60 0.0013 22.9 9.0 43 252-298 18-60 (71)
47 PF04102 SlyX: SlyX; InterPro 59.0 61 0.0013 22.8 7.1 48 227-274 5-52 (69)
48 PF12575 DUF3753: Protein of u 58.4 7.3 0.00016 27.9 1.8 13 286-298 45-57 (72)
49 COG2966 Uncharacterized conser 57.5 13 0.00028 33.4 3.7 53 256-308 92-148 (250)
50 PF09889 DUF2116: Uncharacteri 57.4 20 0.00044 24.6 3.8 29 279-307 27-55 (59)
51 PF10779 XhlA: Haemolysin XhlA 55.1 72 0.0016 22.5 9.9 18 253-270 33-50 (71)
52 PF06143 Baculo_11_kDa: Baculo 54.4 29 0.00064 25.6 4.4 17 273-289 18-34 (84)
53 COG1256 FlgK Flagellar hook-as 53.9 2E+02 0.0043 29.1 11.7 77 43-142 132-211 (552)
54 PHA02675 ORF104 fusion protein 52.1 93 0.002 22.9 6.6 40 231-270 35-74 (90)
55 PF05478 Prominin: Prominin; 51.9 2.9E+02 0.0063 29.3 13.2 62 231-292 355-417 (806)
56 PF05624 LSR: Lipolysis stimul 51.5 4.8 0.0001 26.0 -0.1 16 290-305 2-17 (49)
57 COG4942 Membrane-bound metallo 50.2 1.8E+02 0.0038 28.3 10.1 61 220-280 39-99 (420)
58 PRK11637 AmiB activator; Provi 49.1 2.5E+02 0.0055 27.1 13.9 64 219-282 68-131 (428)
59 PF09753 Use1: Membrane fusion 48.2 2E+02 0.0043 25.6 11.6 42 54-109 29-70 (251)
60 PRK11677 hypothetical protein; 48.1 1.3E+02 0.0029 24.3 7.7 50 230-279 37-86 (134)
61 PF06295 DUF1043: Protein of u 47.9 1.3E+02 0.0028 23.9 7.7 49 230-278 33-81 (128)
62 cd00193 t_SNARE Soluble NSF (N 47.5 78 0.0017 20.7 7.9 52 232-283 5-56 (60)
63 KOG0859 Synaptobrevin/VAMP-lik 47.4 24 0.00052 30.4 3.5 62 225-290 124-185 (217)
64 PF02346 Vac_Fusion: Chordopox 46.7 92 0.002 21.3 6.3 42 228-269 3-44 (57)
65 COG5346 Predicted membrane pro 46.6 1.5E+02 0.0032 23.6 7.5 6 299-304 98-103 (136)
66 PF03908 Sec20: Sec20; InterP 44.8 1.3E+02 0.0027 22.3 10.6 10 298-307 77-86 (92)
67 KOG3894 SNARE protein Syntaxin 44.4 1.9E+02 0.0042 26.8 9.0 40 258-301 271-311 (316)
68 PRK00295 hypothetical protein; 43.0 1.2E+02 0.0025 21.4 7.8 46 228-273 7-52 (68)
69 PRK10404 hypothetical protein; 42.4 1.5E+02 0.0033 22.6 10.5 33 273-305 65-97 (101)
70 PF14992 TMCO5: TMCO5 family 42.2 2.7E+02 0.0059 25.4 13.5 50 221-270 125-174 (280)
71 PRK02793 phi X174 lysis protei 42.2 1.2E+02 0.0027 21.5 7.7 46 227-272 9-54 (72)
72 PHA02692 hypothetical protein; 41.8 23 0.00049 25.1 2.1 10 284-293 40-49 (70)
73 PF10146 zf-C4H2: Zinc finger- 41.5 2.5E+02 0.0055 24.9 11.2 38 209-246 36-73 (230)
74 PRK04325 hypothetical protein; 41.4 1.3E+02 0.0028 21.5 8.0 46 228-273 11-56 (74)
75 PRK10132 hypothetical protein; 40.9 1.7E+02 0.0037 22.7 11.0 34 272-305 70-103 (108)
76 PRK00736 hypothetical protein; 40.5 1.3E+02 0.0028 21.2 7.5 45 228-272 7-51 (68)
77 PF05957 DUF883: Bacterial pro 39.0 1.6E+02 0.0034 21.8 11.3 27 279-305 64-90 (94)
78 cd07912 Tweety_N N-terminal do 38.8 3.8E+02 0.0082 26.1 12.3 20 289-308 235-254 (418)
79 PRK07739 flgK flagellar hook-a 38.6 4.1E+02 0.0089 26.4 11.5 79 44-145 141-222 (507)
80 CHL00038 psbL photosystem II p 38.5 46 0.001 20.4 2.8 19 290-308 18-36 (38)
81 PF10267 Tmemb_cc2: Predicted 38.0 3.8E+02 0.0082 25.9 13.9 88 218-305 250-358 (395)
82 PF06716 DUF1201: Protein of u 37.7 48 0.001 21.5 2.9 16 290-305 16-31 (54)
83 PF06738 DUF1212: Protein of u 37.2 71 0.0015 27.0 5.0 38 257-294 71-108 (193)
84 PRK09793 methyl-accepting prot 37.2 3.9E+02 0.0084 26.5 11.0 51 222-272 432-482 (533)
85 PRK05683 flgK flagellar hook-a 37.1 4.8E+02 0.01 27.1 11.7 77 44-143 129-208 (676)
86 PF05008 V-SNARE: Vesicle tran 36.1 1.6E+02 0.0034 20.9 10.7 29 81-109 21-49 (79)
87 COG0818 DgkA Diacylglycerol ki 36.1 1.6E+02 0.0034 23.5 6.3 52 256-307 69-120 (123)
88 KOG0809 SNARE protein TLG2/Syn 35.4 2.6E+02 0.0056 25.8 8.3 80 221-304 220-300 (305)
89 PRK00753 psbL photosystem II r 35.3 55 0.0012 20.2 2.7 19 290-308 19-37 (39)
90 PF00804 Syntaxin: Syntaxin; 34.8 1.8E+02 0.0039 21.2 8.7 67 217-283 5-71 (103)
91 PF03915 AIP3: Actin interacti 34.8 4.4E+02 0.0096 25.7 12.1 111 45-159 209-322 (424)
92 PRK07191 flgK flagellar hook-a 34.8 4.5E+02 0.0097 25.7 11.5 77 44-143 129-208 (456)
93 PRK15041 methyl-accepting chem 34.5 4.8E+02 0.01 26.0 12.3 54 219-272 433-486 (554)
94 PF14812 PBP1_TM: Transmembran 34.2 2.6 5.6E-05 30.9 -3.7 12 284-295 61-72 (81)
95 TIGR03090 SASP_tlp small, acid 33.5 90 0.0019 22.2 4.0 28 254-281 8-35 (70)
96 PRK02119 hypothetical protein; 33.3 1.8E+02 0.0039 20.7 8.1 47 226-272 9-55 (73)
97 KOG0860 Synaptobrevin/VAMP-lik 33.0 2.1E+02 0.0046 22.5 6.5 14 266-279 72-85 (116)
98 KOG4433 Tweety transmembrane/c 33.0 2.9E+02 0.0062 27.3 8.6 19 290-308 237-255 (526)
99 PF06422 PDR_CDR: CDR ABC tran 32.7 64 0.0014 24.6 3.6 19 271-289 31-49 (103)
100 COG1459 PulF Type II secretory 32.7 2E+02 0.0044 27.7 7.7 57 217-273 96-152 (397)
101 KOG2678 Predicted membrane pro 32.5 3.5E+02 0.0077 23.9 12.6 41 245-285 174-214 (244)
102 TIGR02976 phageshock_pspB phag 31.4 49 0.0011 23.9 2.5 15 295-309 14-28 (75)
103 PRK10884 SH3 domain-containing 31.1 3.5E+02 0.0077 23.5 13.3 40 240-279 118-157 (206)
104 PF03310 Cauli_DNA-bind: Cauli 30.7 2.2E+02 0.0047 22.6 6.2 53 48-104 5-57 (121)
105 PF02419 PsbL: PsbL protein; 30.7 70 0.0015 19.6 2.7 19 290-308 17-35 (37)
106 PRK14749 hypothetical protein; 30.1 78 0.0017 18.5 2.7 19 290-308 6-24 (30)
107 PF00523 Fusion_gly: Fusion gl 30.0 46 0.00099 33.0 2.9 31 256-286 440-470 (490)
108 PF06694 Plant_NMP1: Plant nuc 29.8 1.6E+02 0.0035 27.2 6.1 66 44-109 250-315 (325)
109 PHA03240 envelope glycoprotein 29.5 49 0.0011 28.9 2.6 16 290-305 215-231 (258)
110 PRK06665 flgK flagellar hook-a 29.4 6.4E+02 0.014 25.9 11.6 77 44-143 141-220 (627)
111 PF06024 DUF912: Nucleopolyhed 29.0 40 0.00087 25.7 1.9 20 289-308 64-83 (101)
112 PRK11637 AmiB activator; Provi 28.9 5.3E+02 0.012 24.8 13.3 80 207-286 49-128 (428)
113 KOG4559 Uncharacterized conser 28.9 2.7E+02 0.0058 21.3 8.8 61 209-277 55-115 (120)
114 PRK04406 hypothetical protein; 28.7 2.2E+02 0.0049 20.4 8.2 46 227-272 12-57 (75)
115 PF04728 LPP: Lipoprotein leuc 28.4 2E+02 0.0042 19.6 7.1 30 254-283 17-46 (56)
116 PRK07521 flgK flagellar hook-a 27.9 6E+02 0.013 25.1 11.3 76 44-142 124-202 (483)
117 PF12911 OppC_N: N-terminal TM 27.8 1.1E+02 0.0024 20.1 3.7 16 277-292 5-20 (56)
118 TIGR02120 GspF general secreti 27.2 3.1E+02 0.0067 26.0 8.1 45 230-274 112-156 (399)
119 COG4068 Uncharacterized protei 27.1 1.5E+02 0.0033 20.3 4.1 15 274-288 30-44 (64)
120 PRK03830 small acid-soluble sp 26.6 1.4E+02 0.003 21.5 4.0 25 254-278 9-33 (73)
121 KOG0812 SNARE protein SED5/Syn 26.6 5.1E+02 0.011 23.8 10.1 59 212-273 223-281 (311)
122 PRK10573 type IV pilin biogene 26.0 3.4E+02 0.0075 25.7 8.2 46 224-269 104-149 (399)
123 PF05814 DUF843: Baculovirus p 25.7 69 0.0015 23.6 2.5 21 288-308 24-44 (83)
124 PF14715 FixP_N: N-terminal do 25.6 92 0.002 20.7 2.9 22 287-308 21-42 (51)
125 PF06667 PspB: Phage shock pro 25.2 68 0.0015 23.2 2.4 13 297-309 16-28 (75)
126 PF13198 DUF4014: Protein of u 25.2 1E+02 0.0022 22.0 3.1 8 300-307 31-38 (72)
127 CHL00066 psbH photosystem II p 25.1 91 0.002 22.3 2.9 18 292-309 45-62 (73)
128 PF00482 T2SF: Type II secreti 25.1 1.7E+02 0.0037 21.6 5.0 29 243-271 60-88 (124)
129 PF05531 NPV_P10: Nucleopolyhe 24.8 2.7E+02 0.0059 20.1 6.5 49 219-267 11-62 (75)
130 PF07851 TMPIT: TMPIT-like pro 24.2 6E+02 0.013 23.9 11.2 25 252-276 66-90 (330)
131 PF13150 DUF3989: Protein of u 24.1 2E+02 0.0044 21.2 4.8 36 271-306 9-44 (85)
132 PLN00055 photosystem II reacti 24.1 97 0.0021 22.2 2.9 18 292-309 45-62 (73)
133 PF05739 SNARE: SNARE domain; 23.7 2.3E+02 0.005 18.8 8.8 49 227-275 12-60 (63)
134 PF07352 Phage_Mu_Gam: Bacteri 23.4 4E+02 0.0087 21.5 8.1 52 230-281 4-55 (149)
135 PF04505 Dispanin: Interferon- 23.4 86 0.0019 22.9 2.7 22 276-297 52-73 (82)
136 KOG0250 DNA repair protein RAD 23.2 7.8E+02 0.017 27.0 10.4 88 49-159 351-438 (1074)
137 COG4238 Murein lipoprotein [Ce 23.0 3E+02 0.0065 19.9 6.8 43 244-286 29-71 (78)
138 PF08580 KAR9: Yeast cortical 22.9 8.8E+02 0.019 25.3 12.8 34 130-163 124-157 (683)
139 PF05393 Hum_adeno_E3A: Human 22.8 75 0.0016 23.7 2.2 15 294-308 38-52 (94)
140 PRK13751 putative mercuric tra 22.5 64 0.0014 25.4 1.9 23 286-308 89-111 (116)
141 PF10717 ODV-E18: Occlusion-de 22.4 97 0.0021 22.8 2.7 8 292-299 28-35 (85)
142 cd00179 SynN Syntaxin N-termin 22.3 4E+02 0.0087 21.1 9.2 63 218-280 5-67 (151)
143 PF07106 TBPIP: Tat binding pr 22.2 4.5E+02 0.0097 21.7 8.5 63 44-106 74-137 (169)
144 TIGR02492 flgK_ends flagellar 22.0 6.3E+02 0.014 23.3 11.8 52 44-109 129-183 (322)
145 PF14142 YrzO: YrzO-like prote 21.8 2.2E+02 0.0047 17.9 3.9 28 236-263 15-42 (46)
146 PRK15048 methyl-accepting chem 21.7 7.9E+02 0.017 24.3 13.9 51 221-271 433-483 (553)
147 PF01765 RRF: Ribosome recycli 21.6 4.7E+02 0.01 21.6 8.3 58 49-106 94-158 (165)
148 PRK02624 psbH photosystem II r 21.5 1.2E+02 0.0027 20.9 2.9 18 292-309 33-50 (64)
149 PF06459 RR_TM4-6: Ryanodine R 21.4 2.3E+02 0.0049 25.9 5.5 31 277-307 162-193 (274)
150 smart00283 MA Methyl-accepting 20.8 5.4E+02 0.012 22.0 11.5 41 227-267 194-234 (262)
151 PF05377 FlaC_arch: Flagella a 20.7 2.8E+02 0.0061 18.8 6.3 21 225-245 27-47 (55)
152 PF08173 YbgT_YccB: Membrane b 20.6 1.6E+02 0.0034 17.1 2.8 19 290-308 6-24 (28)
153 PRK00846 hypothetical protein; 20.6 3.4E+02 0.0074 19.7 8.5 48 226-273 13-60 (77)
154 PF00695 vMSA: Major surface a 20.6 33 0.00072 32.0 0.0 11 297-307 235-245 (364)
155 KOG3385 V-SNARE [Intracellular 20.3 4.4E+02 0.0095 20.8 8.7 26 224-249 55-80 (118)
156 PF02411 MerT: MerT mercuric t 20.3 83 0.0018 24.8 2.2 22 287-308 90-111 (116)
157 PRK12715 flgK flagellar hook-a 20.2 9.7E+02 0.021 24.8 11.2 73 44-143 129-204 (649)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-39 Score=281.98 Aligned_cols=290 Identities=19% Similarity=0.227 Sum_probs=217.2
Q ss_pred CccCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhhcCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChH
Q 021645 2 ARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQ 81 (309)
Q Consensus 2 ~~~~DrT~~F~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~ 81 (309)
|+++|||.||+++++++......+.- ....+...+...+.++|.+.|..|.++|..+..+|.+| +.|++.++.++
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~---~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kL--a~lAKrks~f~ 75 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGV---NQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKL--AQLAKRKSLFD 75 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhcccc---ccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccccc
Confidence 56999999999999999885321111 00011123445567899999999999999999999999 88999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 82 ERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQ 161 (309)
Q Consensus 82 erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k 161 (309)
||..-..+++.+|+ +.|..|+..+..++...+ .-|.. ++.+...|..+||..|..+|.++++.|+++++.|.+
T Consensus 76 Dr~VeI~eLT~iik---qdi~sln~~i~~Lqei~~-~~gn~---s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rte 148 (311)
T KOG0812|consen 76 DRPVEIQELTFIIK---QDITSLNSQIAQLQEIVK-ANGNL---SNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTE 148 (311)
T ss_pred CcchhhHHHHHHHh---cchHHHHHHHHHHHHHHH-Hhccc---cchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99988888888888 777777777765544321 11221 225678999999999999999999999999999999
Q ss_pred HHHHhcCccccccccccC-C--CCCCCCC----C----C--CCcc----ccccCCCCcc-hHHHHHHHHHhHHHHHHHHH
Q 021645 162 DAINRAMPRRKLKRETVS-K--SADISTP----N----K--SDIR----ELDEIQPEPL-TVQQQLLDDETRALQVELTS 223 (309)
Q Consensus 162 ~~~~~~~~r~~~~~~~~~-~--~~~~~~~----~----~--~~~~----~~~~~~~~~~-~~q~q~~~~en~~l~~~~~~ 223 (309)
.+++.+.++.++....+. + |..+.+. + . ++.. ..+...+..+ ++|++++++. .+|+++
T Consensus 149 nmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll~es----~~Y~Q~ 224 (311)
T KOG0812|consen 149 NMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMALLDES----DEYVQE 224 (311)
T ss_pred HHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHHHHHH----HHHHHH
Confidence 998877655555442111 1 2211100 0 0 0000 0111112222 3344444433 489999
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHH-HHHH
Q 021645 224 LLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL-TFSI 302 (309)
Q Consensus 224 r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~-~~~l 302 (309)
|..++++||.+|.||++||++||+||.+|||+|.|||+|++++..||+.|+.+|.|+.++.+++||+++.||+++ +|+|
T Consensus 225 R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFfl 304 (311)
T KOG0812|consen 225 RAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFL 304 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888764 6666
Q ss_pred HHHhh
Q 021645 303 LFLDW 307 (309)
Q Consensus 303 lfl~~ 307 (309)
+|+-|
T Consensus 305 vfvlf 309 (311)
T KOG0812|consen 305 VFVLF 309 (311)
T ss_pred HHHHh
Confidence 66655
No 2
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-36 Score=267.20 Aligned_cols=289 Identities=30% Similarity=0.430 Sum_probs=231.0
Q ss_pred CCChHHHHHHHHHHHHhcCCChhHHHHhhhhhhcCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhH
Q 021645 5 RDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERD 84 (309)
Q Consensus 5 ~DrT~~F~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd 84 (309)
+|+|+.|+.+|++++..++.+....... .+....+|.+..+|.+.|.++...|.++..||.++|.+|.+. .|++.++|
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~~~~~-~~~~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d~-~mtd~ekd 78 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGGDAHV-ERKQEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKDF-RMTDAEKD 78 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccCCCCc-chhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHH
Confidence 5999999999999999876443221111 122456788899999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 85 SIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI 164 (309)
Q Consensus 85 ~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~ 164 (309)
.+|.+....+..|...|..|....... . +.+..+|+.+|..+|...++...+.+......|.+...
T Consensus 79 ~id~e~~~fi~~~t~~~~~l~~~~~~~-h-------------~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l 144 (316)
T KOG3894|consen 79 EIDQECRLFIQQYTEKIEQLINYEMEE-H-------------SLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENEL 144 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------------hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999887642 1 24678999999999999999998888887777777654
Q ss_pred Hhc-Cccccccc---cccC--CCCC--C----------------CCCCCCCccccccCCC--CcchHHHHHHHHHhHHHH
Q 021645 165 NRA-MPRRKLKR---ETVS--KSAD--I----------------STPNKSDIRELDEIQP--EPLTVQQQLLDDETRALQ 218 (309)
Q Consensus 165 ~~~-~~r~~~~~---~~~~--~~~~--~----------------~~~~~~~~~~~~~~~~--~~~~~q~q~~~~en~~l~ 218 (309)
... ...+++.. +++. .+.+ . .+..+++...+++... ..+.+|.|+++.||..|+
T Consensus 145 ~~~rl~vl~~~~~~~~~s~~~~~~~~~~~~~~~en~~~~~~~~~~s~~~~e~~~~~~~~~e~~~s~e~~Q~~E~En~~l~ 224 (316)
T KOG3894|consen 145 SEKRLSVLACLDIKYVESKFQTIQNERLSKDNKENTLSERADDNRSLADSELGQDEEKHYEDPLSKEQVQLLETENQRLL 224 (316)
T ss_pred HHHHHhhHhhcchhhccCchhhhhhhcchhhhHHHHHhhcchhhhcccchhhcCcccccCCccccHHHHHHHHHHHHHHH
Confidence 432 11111111 0000 0000 0 0011111122222222 223568899999999999
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL 298 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~ 298 (309)
+.+++..++|++||+.|+||++|+..|+++|.+|.+.||.|.+++..++.||+.||++|+||+.++.+.|.|++++++||
T Consensus 225 ~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvl 304 (316)
T KOG3894|consen 225 NELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVL 304 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 021645 299 TFSILFLDWYS 309 (309)
Q Consensus 299 ~~~llfl~~~~ 309 (309)
+|+|||+|||+
T Consensus 305 sf~lLFldwy~ 315 (316)
T KOG3894|consen 305 SFSLLFLDWYY 315 (316)
T ss_pred HHHHHHHhhcC
Confidence 99999999996
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=241.51 Aligned_cols=275 Identities=15% Similarity=0.192 Sum_probs=198.9
Q ss_pred ccCCChHHHHHHHHHHHHhcCC-------ChhHH-H-Hh--hhhhhc---CCCCCCcHHHHHHHHHHHhHHHHHHHHHHh
Q 021645 3 RIRDRTEDFKDVARHTAVSLGY-------DESKL-A-AI--MASFII---HKPRERSSFTKAALKTLESIGALEQFILNH 68 (309)
Q Consensus 3 ~~~DrT~~F~~~~~~~~~~~g~-------~~~~~-~-~~--~~~~~~---~~~~~~~~F~~~a~~I~~~I~~l~~~l~~l 68 (309)
++||||.+|..|.+...++..+ .|..+ . .+ ++.... .....+|.|..-+.+|...|.++..++.+|
T Consensus 1 atRnrT~lF~~~Rn~~~~~r~~~~~~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eL 80 (305)
T KOG0809|consen 1 ATRNRTELFLLYRNNASHNRQPLGDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDEL 80 (305)
T ss_pred CcchHHHHHHHHHhhhhhhccccccccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 3799999999999998875321 11110 1 00 111111 112237889999999999999999999999
Q ss_pred HHHHhcccCCChHhh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHH
Q 021645 69 RKDYVEMQRTTEQER-------DSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLIL 141 (309)
Q Consensus 69 r~~yl~~~~~~~~er-------d~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L 141 (309)
.+.|.....|+|+|+ +.+..+|+.+++.|...|+.+.....+ .++...-.+.|+..+|
T Consensus 81 gk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~---------------~~~~e~~~~~n~~~~l 145 (305)
T KOG0809|consen 81 GKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ---------------LSPSERLLRKNAQGYL 145 (305)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------------CChHHHHHHHHHHHHH
Confidence 999988877777554 355578899999999999888775421 2344567788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCccccccCCCCcchHHHHHHHHHhHHHHHHH
Q 021645 142 SEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPEPLTVQQQLLDDETRALQVEL 221 (309)
Q Consensus 142 ~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~~en~~l~~~~ 221 (309)
...|+..+..|+..|..|++++..+++.-..+... . .+.....+.++++....++++.++.+.|+ ..+
T Consensus 146 a~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~-----~----~~~~~~~dd~d~~~~~~qe~ql~~~e~~~---~~~ 213 (305)
T KOG0809|consen 146 ALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDS-----L----DNTVDLPDDEDFSDRTFQEQQLMLFENNE---EVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhh-----c----cccccCcchhhhhhhhHHHHHHHHHhcch---HHH
Confidence 99999999999999999999987766421111110 0 11111111223332222233333333444 556
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHH-HHH
Q 021645 222 TSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFV-LTF 300 (309)
Q Consensus 222 ~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~-~~~ 300 (309)
.+|.++|.++-++|.||++||.+|+.+|.+||.+|||||+|++++...|+.|.+||.||..|+|+++++.|+++++ ++|
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii 293 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999999976655443 334
Q ss_pred HHHH
Q 021645 301 SILF 304 (309)
Q Consensus 301 ~llf 304 (309)
++|+
T Consensus 294 ~llv 297 (305)
T KOG0809|consen 294 ALLV 297 (305)
T ss_pred HHHH
Confidence 4443
No 4
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-28 Score=218.56 Aligned_cols=246 Identities=15% Similarity=0.232 Sum_probs=167.0
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc---cCCChHhhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhcc
Q 021645 42 RERSSFTKAALKTLESIGALEQFILNHRKDYVEM---QRTTEQERDSIEHEVTAFIKTCKE---QIDILQNSINDDEANS 115 (309)
Q Consensus 42 ~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~---~~~~~~erd~id~ei~~~i~~~~~---~I~~L~~~~~~~~~~~ 115 (309)
...+.|+..+++|...|..+...+.+++..|... +.+....+.+++..+..+.+.... +|+.+++.........
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 4478999999999999999999999997777332 344456678888777666665544 4555555443221111
Q ss_pred CCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCcccc
Q 021645 116 KGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIREL 195 (309)
Q Consensus 116 ~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (309)
++.++ ......+. ..+..+|.+++..|+.++..|-.+-+++- +|++.......+.+... .+..+.
T Consensus 113 ----~~~~~---~r~rrtq~---~~~~kkf~~~M~~f~~~~~~~r~~~k~~i--~Rql~i~~~~~~~de~i---e~~ie~ 177 (297)
T KOG0810|consen 113 ----RSSAG---LRTRRTQT---SALSKKLKELMNEFNRTQSKYREEYKERI--QRQLFIVGGEETTDEEI---EEMIES 177 (297)
T ss_pred ----CCCcc---chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhCCCcCChHHH---HHHHHC
Confidence 11111 12233333 34669999999999999999766554443 23333332211111000 000000
Q ss_pred ccCCCCcchHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 196 DEIQPEPLTVQQQLL-DDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGN 274 (309)
Q Consensus 196 ~~~~~~~~~~q~q~~-~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~ 274 (309)
.. .....|-.+. -.+....+.++++||++|..||++|.||++||.+|+.+|..||||||+|+.||++|..+|++|+
T Consensus 178 g~---~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~ 254 (297)
T KOG0810|consen 178 GG---SEVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGV 254 (297)
T ss_pred CC---hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 00 0012222221 2344567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcchhhhHHHHHHHHHHHHHHHH
Q 021645 275 KELSQAIRRNTSSRTFLLLFLFVLTFSILFL 305 (309)
Q Consensus 275 ~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl 305 (309)
.+|.+|+.|++++|+|.|+++++++++++++
T Consensus 255 ~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 255 DHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 9999999999999999877776654444333
No 5
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-20 Score=165.76 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=149.3
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCC
Q 021645 43 ERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRK 122 (309)
Q Consensus 43 ~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~ 122 (309)
++..|..-+.+|...|..+..-...+-+..... .+..|.-++-..+...-..|.+.++.+...++......
T Consensus 15 ~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~l--gt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~------- 85 (269)
T KOG0811|consen 15 EPFDFQQLAQEIAANIQRINQQVLSLLRFLNSL--GTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLR------- 85 (269)
T ss_pred CCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHc--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 356899999999999999888888774433322 22223233333333344444455555555444322111
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCC-C-CCCCCCCCCccccccCCC
Q 021645 123 GDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKS-A-DISTPNKSDIRELDEIQP 200 (309)
Q Consensus 123 ~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 200 (309)
. .+...+.......|..-+..+.+.|..+|-.-.++.+ ..+ +-+ .+..++ . +.+... ....-...
T Consensus 86 ---~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek-~~~-~a~---~s~~s~~~~~~~~~~----~~~~~~~~ 152 (269)
T KOG0811|consen 86 ---L-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK-IPM-VAR---GSQNSQQLDEESPRV----DELSNNGS 152 (269)
T ss_pred ---c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-ccc-ccc---ccccchhhhhhhhhh----hhhhccch
Confidence 0 2233555666677888888888888888776544433 110 000 000000 0 000000 00000000
Q ss_pred CcchHHHHHHHHHhH---HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 201 EPLTVQQQLLDDETR---ALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKEL 277 (309)
Q Consensus 201 ~~~~~q~q~~~~en~---~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L 277 (309)
. ...|+++-.+.|+ ..+..+++|.+++++||+.|.|+++||.+|+.||.+||++||.|++|+++|..||+.|+.+|
T Consensus 153 ~-~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L 231 (269)
T KOG0811|consen 153 Q-SQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENL 231 (269)
T ss_pred h-hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111111112222 24677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcchhhhHHHHHHHHHHHHHHHH
Q 021645 278 SQAIRRNTSSRTFLLLFLFVLTFSILFL 305 (309)
Q Consensus 278 ~ka~~~~~~~r~~i~~~~~~~~~~llfl 305 (309)
.||.+|++++|+|.|++++++++++|++
T Consensus 232 ~kA~~yq~~~~k~~~~ll~v~~~v~lii 259 (269)
T KOG0811|consen 232 RKAAKYQRKARKKKCILLLVGGPVGLII 259 (269)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHH
Confidence 9999999999999877776665555443
No 6
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.87 E-value=8e-20 Score=159.92 Aligned_cols=247 Identities=13% Similarity=0.184 Sum_probs=161.6
Q ss_pred cCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 38 IHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 38 ~~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
.......|.|...+..|...+..+...+..+...|...+.+++.++.+=+.++..+....+.++.+..+..+........
T Consensus 27 ~e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s 106 (283)
T COG5325 27 KEDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQS 106 (283)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577899999999999999999999999999888888887776666666666666666666666555422210000
Q ss_pred ccCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCccccc
Q 021645 118 WLGRKGDNSNADTIAH-KHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELD 196 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h-~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (309)
.-.+.+.. -.+-......+.+.-+..|++.+..|.+..+. ...+..|.+...... .. +
T Consensus 107 --------~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~---------~~~~~~~l~eee~e~---~~-~ 165 (283)
T COG5325 107 --------SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN---------KNNDQHPLEEEEDEE---SL-S 165 (283)
T ss_pred --------HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh---------cccccCchhhhhhhh---hh-h
Confidence 00000000 01223345566677777777777777665411 111222221100000 00 0
Q ss_pred cCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 197 EIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKE 276 (309)
Q Consensus 197 ~~~~~~~~~q~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~ 276 (309)
...+..+.+|..+...+-+.-..-+.+|.++|.+|.++|.|+++||.+|+++|.+||+.||+||+|++++..|++.|++|
T Consensus 166 ~~~sq~~lqq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kE 245 (283)
T COG5325 166 SLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKE 245 (283)
T ss_pred ccchhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHH
Confidence 01111112222223333222223367899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHHH
Q 021645 277 LSQAIRRNTSSRTFLLLFLFVLTFSILFL 305 (309)
Q Consensus 277 L~ka~~~~~~~r~~i~~~~~~~~~~llfl 305 (309)
|.||-.|+++.++|-+++|+++.++++|+
T Consensus 246 L~kA~~hqrrt~k~~~~~Llil~vv~lfv 274 (283)
T COG5325 246 LEKAPAHQRRTKKCRFYLLLILLVVLLFV 274 (283)
T ss_pred HHHhHHHHhhhccchhhHHHHHHHHHHHH
Confidence 99999999999999777776665555544
No 7
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.76 E-value=2.7e-16 Score=134.09 Aligned_cols=221 Identities=16% Similarity=0.232 Sum_probs=137.6
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh--hccCCccCC
Q 021645 45 SSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERD-SIEHEVTAFIKTCKEQIDILQNSINDDE--ANSKGWLGR 121 (309)
Q Consensus 45 ~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd-~id~ei~~~i~~~~~~I~~L~~~~~~~~--~~~~~~~g~ 121 (309)
-.|..+-..|.+++..++.-+..+ ..++...+ .+++ +....++.-+....+.-..|+...+..- +.+.
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi--~~~h~d~L--~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~----- 91 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQI--DNLHKDLL--TEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERD----- 91 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc-----
Confidence 456669999999999999988888 44443111 2222 1222333333333344444443333210 0000
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCccccccCCCC
Q 021645 122 KGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPE 201 (309)
Q Consensus 122 ~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (309)
+-+. ..+..-....+.+|.+..+.|+..+..|-+..+++- ||++ ... .|..+...-...+.+.++ .
T Consensus 92 -----~ihl-~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~--rrQy-~Ia--~P~ATEdeve~aInd~nG---~ 157 (280)
T COG5074 92 -----GIHL-ANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQA--RRQY-IIA--QPEATEDEVEAAINDVNG---Q 157 (280)
T ss_pred -----ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHhh-hhc--CCccchHHHHHHhcccch---H
Confidence 0111 112233345678999999999999998765544443 3332 221 121110000000011011 0
Q ss_pred cchHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 202 PLTVQQQLLD----DETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKEL 277 (309)
Q Consensus 202 ~~~~q~q~~~----~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L 277 (309)
...+|. .|- .|.+..+.+++.|+.++.+||++|.||.+||++|+++|.+|.|++|.|+.|++++..||++|+.++
T Consensus 158 qvfsqa-lL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~ 236 (280)
T COG5074 158 QVFSQA-LLNANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHT 236 (280)
T ss_pred HHHHHH-HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhH
Confidence 112221 111 245567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcchhhh
Q 021645 278 SQAIRRNTSSRT 289 (309)
Q Consensus 278 ~ka~~~~~~~r~ 289 (309)
.+|+++.+.+|+
T Consensus 237 d~AvksaRaaRk 248 (280)
T COG5074 237 DKAVKSARAARK 248 (280)
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 8
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=99.36 E-value=1.7e-12 Score=97.77 Aligned_cols=80 Identities=29% Similarity=0.344 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHHHHhcCCChhHHHHhhhhhhcCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhc-------ccC
Q 021645 5 RDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVE-------MQR 77 (309)
Q Consensus 5 ~DrT~~F~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~-------~~~ 77 (309)
+|+|++|++||+.++...+..+. .........+++.+.++|+++|++|..+|.+|..||.++|++||. .+.
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~~~~~~~~~~~ 78 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGK--APSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLSTSSHLSSSSS 78 (87)
T ss_pred CCccHHHHHHHHHHHhhcccccc--ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 69999999999999875432221 001112234566779999999999999999999999999999999 567
Q ss_pred CChHhhHHH
Q 021645 78 TTEQERDSI 86 (309)
Q Consensus 78 ~~~~erd~i 86 (309)
|++.+||.|
T Consensus 79 ~t~~erD~i 87 (87)
T PF10496_consen 79 MTDAERDDI 87 (87)
T ss_pred CCccccCCC
Confidence 888888864
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.31 E-value=2.2e-11 Score=85.86 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021645 223 SLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNT 285 (309)
Q Consensus 223 ~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~ 285 (309)
++.+++..|+++|.+|.+||.+|+.+|.+|+++||+|+++++.|..+|..|+.+|.+|.+++|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999999999999999999999999999999999999999999999875
No 10
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.14 E-value=2.7e-10 Score=79.10 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 222 TSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQA 280 (309)
Q Consensus 222 ~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka 280 (309)
+++++++..|+.+|.+|+.||.+|+.+|.+|+++||+|+++++.+..+++.|+.+|.||
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999999999999999999999875
No 11
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.98 E-value=4.2e-09 Score=74.41 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQA 280 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka 280 (309)
..+.++.+++..++..|.++..||.+|+.+|.+|+++||+|+++++.+..++..|+..|.+|
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 44667899999999999999999999999999999999999999999999999999999875
No 12
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00075 Score=59.61 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHH
Q 021645 222 TSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFS 301 (309)
Q Consensus 222 ~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~~~~ 301 (309)
++..+.+..|+.+|.-+.++=..++.-+.+|+.+||..+..++.+...+..+.+.|.+-.+..+..+.|+.+++++..++
T Consensus 148 ~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~ 227 (235)
T KOG3202|consen 148 QEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLL 227 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999997777776666655555555
Q ss_pred HHHHhhc
Q 021645 302 ILFLDWY 308 (309)
Q Consensus 302 llfl~~~ 308 (309)
|+.+-|+
T Consensus 228 lvv~i~~ 234 (235)
T KOG3202|consen 228 LVVIIFI 234 (235)
T ss_pred HHHHHhc
Confidence 5555554
No 13
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.22 E-value=3.4e-05 Score=59.05 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=69.7
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCCh---HhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTE---QERD---SIEHEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~---~erd---~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
++.|+.++.+|...|..+...+.+|+..|-.....++ +.+. .+..+++..+..|...|+.|+....... ..
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~--~~- 78 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSE--GE- 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cc-
Confidence 4689999999999999999999999877755422222 2344 4457889999999999999998865111 11
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 021645 118 WLGRKGDNSNADTIAHKHGVVLILSEKLHSVT 149 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~ 149 (309)
..+....+.+.+.+..|..+|++++
T Consensus 79 -------~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 79 -------EPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp -------T--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1234467777788888888888764
No 14
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=98.20 E-value=6.1e-05 Score=59.30 Aligned_cols=107 Identities=13% Similarity=0.188 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCCh---HhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTE---QERD---SIEHEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~---~erd---~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
++.|+..+..|..+|..+...+..|+..+-....+++ ..++ .+..++....+.|...|+.|+........
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~---- 78 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA---- 78 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc----
Confidence 5799999999999999999999999777655432232 2233 44567778888888888888776542211
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 118 WLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQD 162 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~ 162 (309)
.+....+.+.+++..|..+|++++..|+.+|..+.++
T Consensus 79 --------~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 79 --------SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred --------cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123456778888999999999999999999997553
No 15
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=97.90 E-value=0.00077 Score=55.56 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCC---hHhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTT---EQERD---SIEHEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~---~~erd---~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
++.|+..+..|...|..+...+..|+..+-.....+ ..-++ .+..++...++.+...|+.|+.........
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~--- 77 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEAL--- 77 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 468999999999999999999999977664442222 22343 344677778888888888887765422110
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021645 118 WLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRA 167 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~ 167 (309)
.+....+++.+.+..|..+|++++..|+.+|..+-++.+++-
T Consensus 78 --------~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i 119 (151)
T cd00179 78 --------NGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERI 119 (151)
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012345777788899999999999999999999877665544
No 16
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.004 Score=48.30 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Q 021645 209 LLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSR 288 (309)
Q Consensus 209 ~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r 288 (309)
.+|.||++..+. +...|.-|-.|=-++..-|..|...+|.++++.+.+...+...-.-+..-.++ +.+
T Consensus 29 ~le~ENee~~e~----------L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~ 96 (118)
T KOG3385|consen 29 SLERENEEAAES----------LQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGI 96 (118)
T ss_pred HHHhhhHHHHHH----------HHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCc
Confidence 455677655444 44555556666678888999999999999999999999999998888776666 666
Q ss_pred hHHHHHHHH
Q 021645 289 TFLLLFLFV 297 (309)
Q Consensus 289 ~~i~~~~~~ 297 (309)
+..||+++.
T Consensus 97 ~l~~~m~~f 105 (118)
T KOG3385|consen 97 SLLCWMAVF 105 (118)
T ss_pred chHHHHHHH
Confidence 666655443
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.77 E-value=0.06 Score=40.27 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=36.8
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVE 271 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~ 271 (309)
+.+.+++..+.|+..++.+=-..+.+-||.++.+++.+++-...-.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhH
Confidence 4577888888888888888888889999999999988776554433
No 18
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.45 Score=41.18 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 204 TVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 204 ~~q~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
..|-++|-+..+ -++.-..|..+-..| ..|--+|=..+-.-+..|-|.+.+=.+-..++..||+++.+-|..-.++
T Consensus 117 ~dQR~rLl~nTe-rLeRst~rl~ds~Ri---a~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR 192 (220)
T KOG1666|consen 117 ADQRARLLQNTE-RLERSTDRLKDSQRI---ALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRR 192 (220)
T ss_pred hhHHHHHHhhhH-HHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence 445555543333 245544455544444 4455454457777778899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhc
Q 021645 284 NTSSRTFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 284 ~~~~r~~i~~~~~~~~~~llfl~~~ 308 (309)
.-.+++.+..++++++++++++-|+
T Consensus 193 ~~~nk~~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 193 LIRNKFTLTAIIALLVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777777777777665
No 19
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=96.26 E-value=0.0015 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.9
Q ss_pred CCccCCChHHHHHHHHHHHHh
Q 021645 1 MARIRDRTEDFKDVARHTAVS 21 (309)
Q Consensus 1 m~~~~DrT~~F~~~~~~~~~~ 21 (309)
|+.+.|||.||+.||.++...
T Consensus 1 m~~IqdRT~EFqqcV~s~~k~ 21 (29)
T PF11416_consen 1 MTSIQDRTIEFQQCVSSYKKR 21 (29)
T ss_dssp H-HHHB-HHHHHHHHHHHHHH
T ss_pred CcchhHhhHHHHHHHHHHHHH
Confidence 567899999999999999864
No 20
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=1.2 Score=38.79 Aligned_cols=217 Identities=12% Similarity=0.141 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhHHH----HhcccCC-C--hHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 45 SSFTKAALKTLESIGALEQFILNHRKD----YVEMQRT-T--EQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 45 ~~F~~~a~~I~~~I~~l~~~l~~lr~~----yl~~~~~-~--~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
+..=++|..+...|........++... |-..+.+ + +..-.-++.++..++.+.....+.+.... ..+
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~-----~s~- 81 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCA-----SSP- 81 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhc-----cCC-
Confidence 345578888888888777777776433 2111111 1 11223556777777776666666665511 000
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCcccccc
Q 021645 118 WLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDE 197 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (309)
.+. .....+..+|++ .|++-++.|+..+.. +..++++... ...+.......+.
T Consensus 82 -a~~--aa~~htL~RHrE--------ILqdy~qef~rir~n-~~a~~e~~~L---l~s~~~~~~~~~~------------ 134 (231)
T KOG3208|consen 82 -ANS--AAVMHTLQRHRE--------ILQDYTQEFRRIRSN-IDAKRERESL---LESVRADISSYPS------------ 134 (231)
T ss_pred -CCc--HHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHhhhhccCCc------------
Confidence 000 001123467775 466777777777776 3333333310 0000000000000
Q ss_pred CCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 198 IQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKEL 277 (309)
Q Consensus 198 ~~~~~~~~q~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L 277 (309)
.+.+... +++..|+..+-+. .+.+... |++-+..- ..+..|.-++..|..-+.++...+=.-|. |
T Consensus 135 -~~~~~~~--e~~lkE~~~in~s-------~~~vde~---Is~A~aTr-e~l~~Qrs~l~~i~~k~~~~a~r~P~IN~-L 199 (231)
T KOG3208|consen 135 -ASGFNRG--EMYLKEHDHINNS-------IRLVDEL---ISQAQATR-ENLHSQRSVLGGINNKVNNIANRFPAINQ-L 199 (231)
T ss_pred -cCCCchH--HHHHHHhccccch-------HHHHHHH---HHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhcchHHH-H
Confidence 0111111 2344555433221 1111111 11112222 24467999999999999888888766554 5
Q ss_pred HHHHHHcchhhhHHHHHHHHHHHHHHHHhhcC
Q 021645 278 SQAIRRNTSSRTFLLLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 278 ~ka~~~~~~~r~~i~~~~~~~~~~llfl~~~~ 309 (309)
...++..|+.--+|+-.++.++.+||||-|||
T Consensus 200 l~kIk~kkrrdslILa~Vis~C~llllfy~~~ 231 (231)
T KOG3208|consen 200 LQKIKIKKRRDSLILAAVISVCTLLLLFYWIN 231 (231)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence 55555555555566665554445555555654
No 21
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.28 Score=38.39 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=34.2
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVE 265 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~ 265 (309)
+.+++++.++.|+-.++.+=-..|.+=||.++.+++-++.
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~ 68 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH
Confidence 3467778888999999999999999999999999887654
No 22
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=95.65 E-value=0.48 Score=35.66 Aligned_cols=62 Identities=11% Similarity=0.299 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHhh
Q 021645 246 STHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDW 307 (309)
Q Consensus 246 ~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl~~ 307 (309)
...+.+|.+.+..+.+.-......+..+.+=+.+..++...-|+++++.|+++..+++|+-|
T Consensus 28 ~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 28 LQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 34566789999999999999999999999888888888888877766555554444444433
No 23
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=94.98 E-value=0.7 Score=35.10 Aligned_cols=96 Identities=11% Similarity=0.213 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCC
Q 021645 45 SSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGD 124 (309)
Q Consensus 45 ~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~ 124 (309)
|+|+....+|...|..+...+... ..+.....+..+......++...++.+...|.-|++.+.--..++..| |
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~--~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~---- 73 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRW--QRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-N---- 73 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH--HHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH--HHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-C----
Confidence 689999999999999999999988 445443336677778888999999999999999999887433222222 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 021645 125 NSNADTIAHKHGVVLILSEKLHSV 148 (309)
Q Consensus 125 ~~~~~~~~h~~~Vv~~L~~~L~~~ 148 (309)
.+.....-|...+..+...+.++
T Consensus 74 -l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 74 -LSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhc
Confidence 22334444445556666666543
No 24
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=4.1 Score=37.56 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 218 QVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
.+.+..-...++.++.-..+++.|-..=+.+|..=+-.+.+-.++|+.++.+++.|...=++|.
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR 268 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888999999999999999999999999999999999999999999999955544443
No 25
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.75 E-value=1.4 Score=39.63 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=44.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIR 282 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~ 282 (309)
.+++-.+-+++-+=+.. |+..|.+-..++++....++.....++..+.-|.+...
T Consensus 169 ~~em~~La~~LK~~s~~---~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~ 223 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLA---FSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS 223 (251)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666553 56689999999999999999999999999999988754
No 26
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=93.52 E-value=2.5 Score=32.00 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=55.8
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhH
Q 021645 51 ALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADT 130 (309)
Q Consensus 51 a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~ 130 (309)
...|...+..+...+..| ..+ .|-.++-..+...+..|...++.+...+....... .....
T Consensus 5 l~~in~~v~~l~k~~~~l-----Gt~----~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~ 65 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQL-----GTP----RDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSN 65 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH------SS----S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------H
T ss_pred HHHHHHHHHHHHHHHHHh-----CCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhh
Confidence 345555666666666555 122 33333344444566666666666666665443210 01223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 131 IAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI 164 (309)
Q Consensus 131 ~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~ 164 (309)
..+......-|..-+..+...|+..+..+.+..+
T Consensus 66 ~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 66 DRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566678999999999999999999877644
No 27
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=6.8 Score=35.56 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL 298 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~ 298 (309)
..+..-+.+|..+..-..||+.|..+=+.+|..=++.|++-..||++++.++.+|..+=+++... ..+.++|++++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~----~~~ll~v~~~v 255 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK----KCILLLVGGPV 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----hhhhhHHHHHH
Confidence 33445567788888889999999999999999999999999999999999999998776655433 38888888777
Q ss_pred HHHHHHHhhc
Q 021645 299 TFSILFLDWY 308 (309)
Q Consensus 299 ~~~llfl~~~ 308 (309)
++++.+.-|+
T Consensus 256 ~lii~l~i~~ 265 (269)
T KOG0811|consen 256 GLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 28
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=92.99 E-value=2.5 Score=38.14 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHH-HHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLL-LFLFV 297 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~-~~~~~ 297 (309)
.++..-++.|..+..-..|++.+..+=+.+|.-=+..|+++..|+.+|...+..|..+=++ .++-|.+.+ +++++
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrr----t~k~~~~~Llil~vv 270 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRR----TKKCRFYLLLILLVV 270 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhh----hccchhhHHHHHHHH
Confidence 5666778899999999999999999999999999999999999999999999999877554 455566544 44455
Q ss_pred HHHHHHHHhh
Q 021645 298 LTFSILFLDW 307 (309)
Q Consensus 298 ~~~~llfl~~ 307 (309)
+.|+++.+--
T Consensus 271 ~lfv~l~~kl 280 (283)
T COG5325 271 LLFVSLIKKL 280 (283)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 29
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=6.5 Score=34.23 Aligned_cols=62 Identities=15% Similarity=0.295 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhH-HHHHHHHHHHHHHHHhhc
Q 021645 247 THILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTF-LLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 247 ~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~-i~~~~~~~~~~llfl~~~ 308 (309)
.-+.+|.-.+-.+..-+-+...-+.-.|.-|.--.++...-+++ ++.++++++|+-+|+-|+
T Consensus 150 e~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~wl 212 (213)
T KOG3251|consen 150 ENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRWL 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567999999999999999999999998888888877777654 444555566777777775
No 30
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=90.90 E-value=5.4 Score=35.15 Aligned_cols=72 Identities=10% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHH
Q 021645 224 LLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFV 297 (309)
Q Consensus 224 r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~ 297 (309)
-.+-+..+-.=..++++|..+=..+|.-=...+..-..|++..+.+++.|-+..++|. .++-|.|.+||+++
T Consensus 190 iEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR--kkki~c~gI~~iii 261 (280)
T COG5074 190 IEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR--KKKIRCYGICFIII 261 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH--hcceehhhhHHHHH
Confidence 3444555555556666666666666666666677788999999999999988865554 34445554444333
No 31
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=90.57 E-value=4.3 Score=28.19 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
.+....+.+.|.-++=.....-+..|.+.+.++...+.++..++..++.-|.+-..+
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 344455555555555567777888999999999999999999999999888775543
No 32
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=3.7 Score=37.36 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=45.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
+.+.+|-.-+..|-.|=-+|+.-|..|.+.+|+|.++|+..-..|...|.-+++
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 345555666666677777999999999999999999999999999999987765
No 33
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=85.46 E-value=2.2 Score=29.33 Aligned_cols=35 Identities=9% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHhhc
Q 021645 274 NKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 274 ~~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl~~~ 308 (309)
.+...+..++.++.+++++.+++++.++++|+-|+
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555556666656666555555555666666554
No 34
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=77.28 E-value=68 Score=30.54 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALN-HLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~-~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
+-+++.-..-..+|.++.|+.+|+ ++++++=.++.-|=++|+|..-+=..+|.++
T Consensus 299 etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEa 354 (455)
T KOG3850|consen 299 ETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEA 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445668888998888885 4788888888888888887766555555544
No 35
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.99 E-value=34 Score=36.19 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=35.8
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
.+..+.+.+..+..-+..++..+..+ ....+..-..++...+........++..|
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 44466666777777777777777665 44455566666666777767777776655
No 36
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=72.74 E-value=3.1 Score=36.76 Aligned_cols=22 Identities=14% Similarity=0.387 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC
Q 021645 288 RTFLLLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 288 r~~i~~~~~~~~~~llfl~~~~ 309 (309)
..|++|||++++|+|.+-++||
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~ 243 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFIN 243 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999998887764
No 37
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=68.86 E-value=49 Score=25.11 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=45.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 207 QQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEA 266 (309)
Q Consensus 207 ~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a 266 (309)
...++..|...-..+.+-.+.+..++..+.++.+.+..|...+ ..||.|+..|..-
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l----~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL----QQIDQIEEQVTEL 78 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4568888888888888889999999999999999998887766 5677777766543
No 38
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=68.28 E-value=1.2e+02 Score=29.41 Aligned_cols=114 Identities=15% Similarity=0.247 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CccCCC
Q 021645 45 SSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSK-GWLGRK 122 (309)
Q Consensus 45 ~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~-~~~g~~ 122 (309)
.....++..+...+.+|...+..||++-... .+|....-+. +..-|..|...|+.|+.+++.....++ .|-.-+
T Consensus 213 ~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~----v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL 288 (426)
T smart00806 213 KKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLET----VQKELETARKELKKMEEYIDIEKPIWKKIWEAEL 288 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 4567788999999999999999999987775 3455554443 455667788899999999874332221 120000
Q ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 123 GDNS-NADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQD 162 (309)
Q Consensus 123 ~~~~-~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~ 162 (309)
.... .-+.-.|.+-.+.-|..-|..++.+|.-+.+.--++
T Consensus 289 ~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ 329 (426)
T smart00806 289 DKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCCEEQ 329 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 012346777778889999999999999888875443
No 39
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.91 E-value=71 Score=29.13 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.+..=..+.|.-..=..-..++.+|+|.|++|+.+++........|...|..
T Consensus 81 t~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 81 TRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 3333334444444444566788899999999999999999888888877754
No 40
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=63.70 E-value=12 Score=22.92 Aligned_cols=20 Identities=15% Similarity=0.374 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 021645 288 RTFLLLFLFVLTFSILFLDW 307 (309)
Q Consensus 288 r~~i~~~~~~~~~~llfl~~ 307 (309)
|.|+++-+..+.+++.++.|
T Consensus 14 r~Wi~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 56776655544444444443
No 41
>PHA03054 IMV membrane protein; Provisional
Probab=63.48 E-value=6.3 Score=27.91 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=7.5
Q ss_pred cchhhhHHHHHHHHHH
Q 021645 284 NTSSRTFLLLFLFVLT 299 (309)
Q Consensus 284 ~~~~r~~i~~~~~~~~ 299 (309)
.++..|++++++++++
T Consensus 43 ~~~~~~~~~ii~l~~v 58 (72)
T PHA03054 43 TGCWGWYWLIIIFFIV 58 (72)
T ss_pred cCCchHHHHHHHHHHH
Confidence 4455555544444443
No 42
>PHA02844 putative transmembrane protein; Provisional
Probab=63.17 E-value=6.4 Score=28.18 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHHH
Q 021645 286 SSRTFLLLFLFVLT 299 (309)
Q Consensus 286 ~~r~~i~~~~~~~~ 299 (309)
+..+++++++++++
T Consensus 45 ~~~~~~~ii~i~~v 58 (75)
T PHA02844 45 SSSTKIWILTIIFV 58 (75)
T ss_pred ChhHHHHHHHHHHH
Confidence 34444444444433
No 43
>PHA02650 hypothetical protein; Provisional
Probab=62.89 E-value=4.7 Score=29.20 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=6.7
Q ss_pred cchhhhHHHHHHHHH
Q 021645 284 NTSSRTFLLLFLFVL 298 (309)
Q Consensus 284 ~~~~r~~i~~~~~~~ 298 (309)
.++..++++++++++
T Consensus 44 ~~~~~~~~~ii~i~~ 58 (81)
T PHA02650 44 VSWFNGQNFIFLIFS 58 (81)
T ss_pred cCCchHHHHHHHHHH
Confidence 444555444444333
No 44
>PHA02819 hypothetical protein; Provisional
Probab=62.49 E-value=6.7 Score=27.78 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=7.2
Q ss_pred cchhhhHHHHHHHHHH
Q 021645 284 NTSSRTFLLLFLFVLT 299 (309)
Q Consensus 284 ~~~~r~~i~~~~~~~~ 299 (309)
.++..|+++++.++++
T Consensus 41 ~~~~~~~~~ii~l~~~ 56 (71)
T PHA02819 41 KKSFLRYYLIIGLVTI 56 (71)
T ss_pred cCChhHHHHHHHHHHH
Confidence 3344455444444433
No 45
>PHA02975 hypothetical protein; Provisional
Probab=59.75 E-value=6.6 Score=27.66 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=6.9
Q ss_pred chhhhHHHHHHHHHH
Q 021645 285 TSSRTFLLLFLFVLT 299 (309)
Q Consensus 285 ~~~r~~i~~~~~~~~ 299 (309)
++..+++++++++++
T Consensus 40 ~~~~~~~~ii~i~~v 54 (69)
T PHA02975 40 KSSLSIILIIFIIFI 54 (69)
T ss_pred CCchHHHHHHHHHHH
Confidence 444454444444433
No 46
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.41 E-value=60 Score=22.92 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHH
Q 021645 252 QAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL 298 (309)
Q Consensus 252 Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~ 298 (309)
-.+.++.++.+.......+...+.+|.+ -+.+-+|++.+++.+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~----I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEK----IKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3344555555555544455555555544 555667777666543
No 47
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.03 E-value=61 Score=22.83 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGN 274 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~ 274 (309)
.|..+|..+.-.-.....|...|..|...|+++...+......+....
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777778888899999999999888888777776654
No 48
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=58.43 E-value=7.3 Score=27.86 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=5.2
Q ss_pred hhhhHHHHHHHHH
Q 021645 286 SSRTFLLLFLFVL 298 (309)
Q Consensus 286 ~~r~~i~~~~~~~ 298 (309)
+..++++++.+++
T Consensus 45 ~~~~~~~ii~ii~ 57 (72)
T PF12575_consen 45 NFNWIILIISIIF 57 (72)
T ss_pred cchHHHHHHHHHH
Confidence 3344444443333
No 49
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=57.52 E-value=13 Score=33.41 Aligned_cols=53 Identities=17% Similarity=0.380 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHH---HHHHHHHH-hhc
Q 021645 256 IEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFV---LTFSILFL-DWY 308 (309)
Q Consensus 256 id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~---~~~~llfl-~~~ 308 (309)
+++|.-.+++=...+++|+..|.+-.+...+.++|.+.+... .+|.+||- +|+
T Consensus 92 v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~~f~~l~gG~w~ 148 (250)
T COG2966 92 VNRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAAAFALLFGGGWL 148 (250)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHHHHHHHcCCchH
Confidence 344445555555678888888888887777777776655432 35667766 664
No 50
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=57.37 E-value=20 Score=24.63 Aligned_cols=29 Identities=10% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHcchhhhHHHHHHHHHHHHHHHHhh
Q 021645 279 QAIRRNTSSRTFLLLFLFVLTFSILFLDW 307 (309)
Q Consensus 279 ka~~~~~~~r~~i~~~~~~~~~~llfl~~ 307 (309)
++.+++++.++.-.++++++.++|+.+-|
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776777777776666666554
No 51
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.10 E-value=72 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021645 253 AQQIEHLYEQAVEATKNV 270 (309)
Q Consensus 253 ~e~id~I~~~~~~a~~~v 270 (309)
...|..+......-..|.
T Consensus 33 e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 33 EKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 52
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=54.45 E-value=29 Score=25.63 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcchhhh
Q 021645 273 GNKELSQAIRRNTSSRT 289 (309)
Q Consensus 273 g~~~L~ka~~~~~~~r~ 289 (309)
...||.+-+.++++.=+
T Consensus 18 d~DQL~qlVsrN~sfir 34 (84)
T PF06143_consen 18 DYDQLEQLVSRNRSFIR 34 (84)
T ss_pred cHHHHHHHHHhChHHHH
Confidence 35788888877766654
No 53
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=53.89 E-value=2e+02 Score=29.10 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhccCCcc
Q 021645 43 ERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQ---IDILQNSINDDEANSKGWL 119 (309)
Q Consensus 43 ~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~---I~~L~~~~~~~~~~~~~~~ 119 (309)
....++..|..+...|..+...|.+++. .++.++...+.+++.. |..|.+.|..... .
T Consensus 132 ~r~~vl~~a~~l~~~in~~~~~L~~l~~--------------~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~-----~ 192 (552)
T COG1256 132 ARQAVLSKAQTLVNQINNTYEQLTDLRK--------------DINAEIAATVDEVNSLLKQIADLNKQIRKVKA-----A 192 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C
Confidence 3568999999999999999999999844 3445555555555554 4555555543211 1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHH
Q 021645 120 GRKGDNSNADTIAHKHGVVLILS 142 (309)
Q Consensus 120 g~~~~~~~~~~~~h~~~Vv~~L~ 142 (309)
| ....+...-|+..|.-|+
T Consensus 193 g----~~~NdLlDqRD~Lv~eLs 211 (552)
T COG1256 193 G----NDPNDLLDQRDQLVDELS 211 (552)
T ss_pred C----CCchhHHHHHHHHHHHHH
Confidence 1 133556666665555444
No 54
>PHA02675 ORF104 fusion protein; Provisional
Probab=52.06 E-value=93 Score=22.89 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 231 TETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNV 270 (309)
Q Consensus 231 ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v 270 (309)
+|..+..|..+|..+...-..=++.|+|++.+++..-.++
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555557788888888888999999998887654443
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=51.93 E-value=2.9e+02 Score=29.25 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHH
Q 021645 231 TETKMVEVSALNHLMSTHILHQAQQIEH-LYEQAVEATKNVELGNKELSQAIRRNTSSRTFLL 292 (309)
Q Consensus 231 ie~~i~ei~~l~~~l~~~V~~Q~e~id~-I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~ 292 (309)
+...+.++-.........+..+.+.|.. ++.++.+...++...-..-...++.-...||.+.
T Consensus 355 t~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~ 417 (806)
T PF05478_consen 355 TSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIVG 417 (806)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 3444445555555666666666665554 3333444444444443333333333334455433
No 56
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=51.51 E-value=4.8 Score=26.00 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021645 290 FLLLFLFVLTFSILFL 305 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl 305 (309)
|+..++++++++|+|+
T Consensus 2 Wl~V~~iilg~~ll~~ 17 (49)
T PF05624_consen 2 WLFVVLIILGALLLLL 17 (49)
T ss_pred eEEEeHHHHHHHHHHH
Confidence 3445566666555554
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.22 E-value=1.8e+02 Score=28.28 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 220 ELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQA 280 (309)
Q Consensus 220 ~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka 280 (309)
.+.+-..++...++.|.+...-+..|-..+.++.+.|..|+.....+...+..-+..|...
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3445567788888999999999999999999999999999988888877766665555433
No 58
>PRK11637 AmiB activator; Provisional
Probab=49.13 E-value=2.5e+02 Score=27.06 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIR 282 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~ 282 (309)
..+.+-..++..+++.|.++..-.......+..-...|+.+...+......++.....|.+-..
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555667777777777777777777777777777777777777777777777776655444
No 59
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=48.16 E-value=2e+02 Score=25.59 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021645 54 TLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSIN 109 (309)
Q Consensus 54 I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~ 109 (309)
+.+.|..|...|.+|+..... ..+ ..++.+.++|+.|+..+.
T Consensus 29 l~~yv~~L~~~l~~L~~~~~~------~s~--------e~l~eY~~ri~~Lk~l~~ 70 (251)
T PF09753_consen 29 LEKYVETLREMLEELEESLSK------PSK--------EVLNEYSERIDFLKGLIE 70 (251)
T ss_pred HHHHHHHHHHHHHHHHhccCC------CCH--------HHHHHHHHHHHHHHHHHh
Confidence 445577777777777443111 112 256777788888877664
No 60
>PRK11677 hypothetical protein; Provisional
Probab=48.05 E-value=1.3e+02 Score=24.27 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=42.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 230 QTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 230 ~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.+|+.-.|+.+..++++.|..+=.+.++.+-.+=.+...|+..|...|.-
T Consensus 37 eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~Llp 86 (134)
T PRK11677 37 ELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSELLP 86 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45556667888888999999999999999999999999999999988865
No 61
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.87 E-value=1.3e+02 Score=23.94 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=40.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 230 QTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELS 278 (309)
Q Consensus 230 ~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ 278 (309)
.+++.=.||.+..+++..|...-.+.++.+..+-.+...++..|...|.
T Consensus 33 eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 33 ELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556777888888899999999999999999999999999988874
No 62
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=47.55 E-value=78 Score=20.65 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=29.3
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 232 ETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 232 e~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
.+.+..|.....++..+..+=+..|..=..-++....+++.+...+.+|..+
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555556666666555555544
No 63
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=24 Score=30.42 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=41.7
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTF 290 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~ 290 (309)
.+.+.++..+|.|+-.++-+==..|.+-||.|+-+-+.+++-.. -...-++..++-++.-||
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~----~s~~fr~q~r~~~r~mw~ 185 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRS----KSFDFRTQGRKLRRKMWF 185 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhh----hhHHHHHHHHHHHHHHHH
Confidence 45577788888888888888788888889888777665554443 344555555444444443
No 64
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=46.74 E-value=92 Score=21.26 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=34.6
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKN 269 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~ 269 (309)
++.++..+..|-..|.....--..+++.|+|++.+++..-.+
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 567788888888888888888899999999999888765443
No 65
>COG5346 Predicted membrane protein [Function unknown]
Probab=46.57 E-value=1.5e+02 Score=23.60 Aligned_cols=6 Identities=0% Similarity=0.102 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021645 299 TFSILF 304 (309)
Q Consensus 299 ~~~llf 304 (309)
+|+|++
T Consensus 98 gi~LVv 103 (136)
T COG5346 98 GIFLVV 103 (136)
T ss_pred HHHHHH
Confidence 333333
No 66
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=44.85 E-value=1.3e+02 Score=22.33 Aligned_cols=10 Identities=20% Similarity=0.457 Sum_probs=3.9
Q ss_pred HHHHHHHHhh
Q 021645 298 LTFSILFLDW 307 (309)
Q Consensus 298 ~~~~llfl~~ 307 (309)
+.|+++.+-|
T Consensus 77 ~~~f~~~v~y 86 (92)
T PF03908_consen 77 FLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 67
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=1.9e+02 Score=26.78 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHH
Q 021645 258 HLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFL-FVLTFS 301 (309)
Q Consensus 258 ~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~-~~~~~~ 301 (309)
++..|+.+..+.|.+| .++....+..--+.++++ +++.|+
T Consensus 271 ~~teNIk~gNe~irka----~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 271 GATENIKDGNEEIRKA----KRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred cchhhhhhhHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHH
Confidence 4566666666666655 445555666665544433 444443
No 68
>PRK00295 hypothetical protein; Provisional
Probab=42.97 E-value=1.2e+02 Score=21.39 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=35.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
|..+|-.+.-.-....+|...|..|...|+++...+......+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777777888889999999988887777766666553
No 69
>PRK10404 hypothetical protein; Provisional
Probab=42.38 E-value=1.5e+02 Score=22.60 Aligned_cols=33 Identities=6% Similarity=-0.147 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHH
Q 021645 273 GNKELSQAIRRNTSSRTFLLLFLFVLTFSILFL 305 (309)
Q Consensus 273 g~~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl 305 (309)
+......+..|.+.+.|--+.+-.+++|+|=+|
T Consensus 65 ~k~aa~~td~yV~e~Pw~avGiaagvGlllG~L 97 (101)
T PRK10404 65 AKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 455566667777788887777777777776554
No 70
>PF14992 TMCO5: TMCO5 family
Probab=42.22 E-value=2.7e+02 Score=25.44 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 221 LTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNV 270 (309)
Q Consensus 221 ~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v 270 (309)
+.....++.+++....+++++-.+=+.-+..=.|.+.+|++.-+...-+-
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~ 174 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEK 174 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555544445555555444444433
No 71
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.17 E-value=1.2e+02 Score=21.50 Aligned_cols=46 Identities=7% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVEL 272 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~ 272 (309)
.+..+|..+.-......+|...|.+|...|+++...+......+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777788888999999998888777766665544
No 72
>PHA02692 hypothetical protein; Provisional
Probab=41.80 E-value=23 Score=25.14 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=4.2
Q ss_pred cchhhhHHHH
Q 021645 284 NTSSRTFLLL 293 (309)
Q Consensus 284 ~~~~r~~i~~ 293 (309)
.++..|++++
T Consensus 40 ~~~~~~~~~i 49 (70)
T PHA02692 40 SKGVPWTTVF 49 (70)
T ss_pred cCCcchHHHH
Confidence 3444444333
No 73
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.48 E-value=2.5e+02 Score=24.85 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 021645 209 LLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMS 246 (309)
Q Consensus 209 ~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~ 246 (309)
.+..|-..|+.+-....++++.|...|..|..++...-
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777888888888877776665543
No 74
>PRK04325 hypothetical protein; Provisional
Probab=41.37 E-value=1.3e+02 Score=21.52 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
|..+|..+.-.-....+|...|.+|...|+++...+......+...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777777788888999988888887776666655543
No 75
>PRK10132 hypothetical protein; Provisional
Probab=40.90 E-value=1.7e+02 Score=22.68 Aligned_cols=34 Identities=9% Similarity=-0.218 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHH
Q 021645 272 LGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFL 305 (309)
Q Consensus 272 ~g~~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl 305 (309)
.+..-...+..|...+.|.-+.|-.+++|+|=+|
T Consensus 70 ~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~L 103 (108)
T PRK10132 70 AARDAVGCADTFVRERPWCSVGTAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3444455666677888887777777777777554
No 76
>PRK00736 hypothetical protein; Provisional
Probab=40.48 E-value=1.3e+02 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=34.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVEL 272 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~ 272 (309)
|..+|..+...-....+|...|..|...|+.+...+......+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777778888899999998888777766666654
No 77
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=39.02 E-value=1.6e+02 Score=21.80 Aligned_cols=27 Identities=11% Similarity=-0.124 Sum_probs=16.0
Q ss_pred HHHHHcchhhhHHHHHHHHHHHHHHHH
Q 021645 279 QAIRRNTSSRTFLLLFLFVLTFSILFL 305 (309)
Q Consensus 279 ka~~~~~~~r~~i~~~~~~~~~~llfl 305 (309)
.+..|.+.+.+.-+.+-++++|+|=+|
T Consensus 64 ~~~~~V~e~P~~svgiAagvG~llG~L 90 (94)
T PF05957_consen 64 QTEDYVRENPWQSVGIAAGVGFLLGLL 90 (94)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 344456666666666666667666443
No 78
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=38.78 E-value=3.8e+02 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 021645 289 TFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 289 ~~i~~~~~~~~~~llfl~~~ 308 (309)
||.+++|.+++++.+++-|+
T Consensus 235 r~~li~~s~~g~l~l~~~W~ 254 (418)
T cd07912 235 RCLLIVFSVCGLFALIISWL 254 (418)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666664
No 79
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.65 E-value=4.1e+02 Score=26.43 Aligned_cols=79 Identities=22% Similarity=0.220 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhccCCccC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKE---QIDILQNSINDDEANSKGWLG 120 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~---~I~~L~~~~~~~~~~~~~~~g 120 (309)
...++..|+.+...|..+...|.+++. .++.++...+.+++. .|..|++.|......
T Consensus 141 r~~vl~~a~~La~~~n~~~~~L~~~~~--------------~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~------ 200 (507)
T PRK07739 141 RSVVRQRAQALAETFNYLSQSLTDIQN--------------DLKSEIDVTVKEINSLASQISDLNKQIAKVEPN------ 200 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 567888999999999999888888843 344445545554444 445555555432111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHH
Q 021645 121 RKGDNSNADTIAHKHGVVLILSEKL 145 (309)
Q Consensus 121 ~~~~~~~~~~~~h~~~Vv~~L~~~L 145 (309)
+....+....|+..+.-|...+
T Consensus 201 ---g~~~ndLlDqRD~ll~~LS~~v 222 (507)
T PRK07739 201 ---GYLPNDLYDQRDLLLDELSKIV 222 (507)
T ss_pred ---CCCCchhHHHHHHHHHHHHhhc
Confidence 1134567778887776666443
No 80
>CHL00038 psbL photosystem II protein L
Probab=38.55 E-value=46 Score=20.44 Aligned_cols=19 Identities=16% Similarity=0.640 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
+.+.+++|++..+||-.|+
T Consensus 18 Ly~GLLlifvl~vlfssyf 36 (38)
T CHL00038 18 LYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445566666777777665
No 81
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.02 E-value=3.8e+02 Score=25.87 Aligned_cols=88 Identities=14% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhcHHHHH--------HHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--
Q 021645 218 QVELTSLLDAVQQTETKMVEVS--------ALNHLMSTH---IL-HQAQQIEHLYEQAVEATKNVELGN-KELSQAIR-- 282 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~--------~l~~~l~~~---V~-~Q~e~id~I~~~~~~a~~~v~~g~-~~L~ka~~-- 282 (309)
...+++.-...+.+|.+|.|+- .|-++|+.+ |. +=.|....|.++++.-...|.+=. .++.+++.
T Consensus 250 ~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e 329 (395)
T PF10267_consen 250 LEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLE 329 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3344444445556666666544 444555432 22 445677778888888877777655 44555533
Q ss_pred --HcchhhhHHHHH----HHHHHHHHHHH
Q 021645 283 --RNTSSRTFLLLF----LFVLTFSILFL 305 (309)
Q Consensus 283 --~~~~~r~~i~~~----~~~~~~~llfl 305 (309)
.+...|.++..| +.++.++|+|+
T Consensus 330 ~~~n~~~r~~l~k~inllL~l~~vlLv~v 358 (395)
T PF10267_consen 330 GTENSRARALLGKLINLLLTLLTVLLVFV 358 (395)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345444433 33344555554
No 82
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=37.72 E-value=48 Score=21.49 Aligned_cols=16 Identities=44% Similarity=0.806 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021645 290 FLLLFLFVLTFSILFL 305 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl 305 (309)
+||+|++++..++.|+
T Consensus 16 lIC~Fl~~~~~F~~F~ 31 (54)
T PF06716_consen 16 LICLFLFCLVVFIWFV 31 (54)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555655555443
No 83
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=37.19 E-value=71 Score=26.98 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHH
Q 021645 257 EHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLF 294 (309)
Q Consensus 257 d~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~ 294 (309)
+++-..+..-.-.++++.++|.+-.+......+|+.++
T Consensus 71 ~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l 108 (193)
T PF06738_consen 71 NRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVIL 108 (193)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 34444444455567788888888887775566554433
No 84
>PRK09793 methyl-accepting protein IV; Provisional
Probab=37.17 E-value=3.9e+02 Score=26.54 Aligned_cols=51 Identities=8% Similarity=0.103 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 222 TSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVEL 272 (309)
Q Consensus 222 ~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~ 272 (309)
..-...+..|...+.++.....+++..+.+|...++.|..++.+...-+++
T Consensus 432 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~ 482 (533)
T PRK09793 432 NNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777888888899999999999999999988887777665443333
No 85
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.08 E-value=4.8e+02 Score=27.15 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhccCCccC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAF---IKTCKEQIDILQNSINDDEANSKGWLG 120 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~---i~~~~~~I~~L~~~~~~~~~~~~~~~g 120 (309)
...++..|+.+...+..+...|.+++. .++.++... |..+-+.|..|++.|......
T Consensus 129 Rq~vl~~A~~La~~fn~~~~~L~~l~~--------------~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~------ 188 (676)
T PRK05683 129 RQLLLTQAQGLSKRFNSLSSQLNQQNS--------------NINSQLSAMTDQVNNLTTSIASYNKQIAQASAS------ 188 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 557888888888888888888888743 334444444 444445566666666532111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH
Q 021645 121 RKGDNSNADTIAHKHGVVLILSE 143 (309)
Q Consensus 121 ~~~~~~~~~~~~h~~~Vv~~L~~ 143 (309)
+....+....|+..+.-|..
T Consensus 189 ---G~~~NdLlDqRD~Ll~eLS~ 208 (676)
T PRK05683 189 ---GATPNDLLDARDEAVRQLNE 208 (676)
T ss_pred ---CCCchHhHHHHHHHHHHHHh
Confidence 11345667777766655553
No 86
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.14 E-value=1.6e+02 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021645 81 QERDSIEHEVTAFIKTCKEQIDILQNSIN 109 (309)
Q Consensus 81 ~erd~id~ei~~~i~~~~~~I~~L~~~~~ 109 (309)
++|.....++...+..|...|+.|+-.+.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999988775
No 87
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=36.12 E-value=1.6e+02 Score=23.48 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHhh
Q 021645 256 IEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLDW 307 (309)
Q Consensus 256 id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl~~ 307 (309)
++-+...+|.+.+-+..=..+|.|-.+--.+.-.++..++.+++.+++|+.+
T Consensus 69 vEllNTAIEa~VD~~s~e~helak~AKD~as~AVli~~l~a~~v~~~il~~~ 120 (123)
T COG0818 69 VELLNTAIEAVVDLISPEYHELAKRAKDMGSAAVLIASLFAVIVWLIILLPK 120 (123)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777776666666655555543
No 88
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.37 E-value=2.6e+02 Score=25.78 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhh-HHHHHHHHHH
Q 021645 221 LTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRT-FLLLFLFVLT 299 (309)
Q Consensus 221 ~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~-~i~~~~~~~~ 299 (309)
+..-.+.|..+..-..|++.|.-+=++.|.-=+-.|+++--.++++...+.+|.. +.+++++-.. +++++++++.
T Consensus 220 V~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~----yQk~~~k~~~i~~L~l~ii~l 295 (305)
T KOG0809|consen 220 VTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER----YQKRNKKMKVILMLTLLIIAL 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH----HHhcCCceEehHHHHHHHHHH
Confidence 4444556677777778888888888888877777888888888888888888853 4556666664 3445555444
Q ss_pred HHHHH
Q 021645 300 FSILF 304 (309)
Q Consensus 300 ~~llf 304 (309)
|++|+
T Consensus 296 lvlli 300 (305)
T KOG0809|consen 296 LVLLI 300 (305)
T ss_pred HHHHH
Confidence 44444
No 89
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=35.29 E-value=55 Score=20.21 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
+.+.+++|+++.+||-.||
T Consensus 19 Ly~GlLlifvl~vLFssYf 37 (39)
T PRK00753 19 LYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4455666777788887775
No 90
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=34.78 E-value=1.8e+02 Score=21.17 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 217 LQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 217 l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
.+..+.+-...|..|+..|.+|..+....-.-...-.+.=+.|+.-+.++..........|......
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677788888888888888877665554112444555555555555555555555554443
No 91
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=34.77 E-value=4.4e+02 Score=25.69 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CccCCC
Q 021645 45 SSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSK-GWLGRK 122 (309)
Q Consensus 45 ~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~-~~~g~~ 122 (309)
......+..+...+.+|...+..||.+-+.. .+++...-.. +..-+..+...|+.|+.++......++ .|-.-+
T Consensus 209 ~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~----v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL 284 (424)
T PF03915_consen 209 KKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLET----VAKDISRASKELKKMKEYIKTEKPIWKKIWESEL 284 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4677888899999999999999999887765 3444444333 333444555566666666654332211 110000
Q ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 123 GDNS-NADTIAHKHGVVLILSEKLHSVTAQFDQMRAIR 159 (309)
Q Consensus 123 ~~~~-~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R 159 (309)
.... .-+.-.|.+..+.-|...|..++.+|.-+...-
T Consensus 285 ~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 285 QKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 012245667777889999999999998887764
No 92
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.77 E-value=4.5e+02 Score=25.73 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhccCCccC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQ---IDILQNSINDDEANSKGWLG 120 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~---I~~L~~~~~~~~~~~~~~~g 120 (309)
...++..|+.+...+..+...|.++| +.++.++...+..++.. |..|+..+......
T Consensus 129 r~~vl~~a~~la~~~n~~~~~l~~~~--------------~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~------ 188 (456)
T PRK07191 129 RQQVIESANAMALRFNNVNNFIVQQK--------------KSIGQQRDATVKQINSLTRSIADYNQKILKNRSD------ 188 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 55788888888888888888887773 34455555555555554 55555555422111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH
Q 021645 121 RKGDNSNADTIAHKHGVVLILSE 143 (309)
Q Consensus 121 ~~~~~~~~~~~~h~~~Vv~~L~~ 143 (309)
+....+....|+..+.-|..
T Consensus 189 ---g~~~ndL~DqRD~ll~eLS~ 208 (456)
T PRK07191 189 ---GNNISDLLDQRDLQIKKLSG 208 (456)
T ss_pred ---CCCCchhHHHHHHHHHHHHh
Confidence 11335667777766555543
No 93
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=34.47 E-value=4.8e+02 Score=26.05 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVEL 272 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~ 272 (309)
..+..-.+.+..|...+.++..+..+++..+.+|...++.|..++.+...-.+.
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567888889999999999999999999999999998877665544333
No 94
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=34.20 E-value=2.6 Score=30.91 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=0.7
Q ss_pred cchhhhHHHHHH
Q 021645 284 NTSSRTFLLLFL 295 (309)
Q Consensus 284 ~~~~r~~i~~~~ 295 (309)
.++.|+|+++|+
T Consensus 61 ~rkKrrwlwLli 72 (81)
T PF14812_consen 61 PRKKRRWLWLLI 72 (81)
T ss_dssp ----------TT
T ss_pred ccccchhHHHHH
Confidence 445555544433
No 95
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=33.51 E-value=90 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 254 QQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 254 e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
..+++|.+.+.+|..|++.|...|..+.
T Consensus 8 DNVEkLQ~mi~nTieN~~eAee~l~~~~ 35 (70)
T TIGR03090 8 DNVEKLQQMIDNTIENMEEANEYIEAHA 35 (70)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888999999999999988887654
No 96
>PRK02119 hypothetical protein; Provisional
Probab=33.29 E-value=1.8e+02 Score=20.75 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVEL 272 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~ 272 (309)
+.+..+|..+.-......+|...|..|...|+++...+......+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777788888899998888888777766665544
No 97
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.03 E-value=2.1e+02 Score=22.47 Aligned_cols=14 Identities=14% Similarity=0.174 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 021645 266 ATKNVELGNKELSQ 279 (309)
Q Consensus 266 a~~~v~~g~~~L~k 279 (309)
++..-+.+...|++
T Consensus 72 ~as~F~~~A~klkr 85 (116)
T KOG0860|consen 72 GASQFEKTAVKLKR 85 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 98
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=33.00 E-value=2.9e+02 Score=27.35 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
|.+++|.+++++.|.+.|.
T Consensus 237 c~li~fsv~Gll~lvisWl 255 (526)
T KOG4433|consen 237 CLLIVFSVCGLLALVISWL 255 (526)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3344444556666666664
No 99
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=32.68 E-value=64 Score=24.64 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcchhhh
Q 021645 271 ELGNKELSQAIRRNTSSRT 289 (309)
Q Consensus 271 ~~g~~~L~ka~~~~~~~r~ 289 (309)
-.|...|..+..+..+.+|
T Consensus 31 V~G~~YL~~~y~y~~sh~W 49 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSHRW 49 (103)
T ss_pred EeHHHHHhhhccccccchh
Confidence 3577788888888888776
No 100
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.67 E-value=2e+02 Score=27.70 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 217 LQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 217 l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
.+..+.+..+.=..+-..+.....+|.++-.....-||.--+++.-.++..++.++-
T Consensus 96 ~l~~i~~~l~~G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~~ 152 (397)
T COG1459 96 VLTSILEELESGKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEKQ 152 (397)
T ss_pred HHHHHHHHHHCCCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344444455555566777777788888888888888888888888888877777654
No 101
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=32.47 E-value=3.5e+02 Score=23.89 Aligned_cols=41 Identities=2% Similarity=-0.039 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021645 245 MSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNT 285 (309)
Q Consensus 245 l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~ 285 (309)
+..-+.+-.+++.+-.--++.....+...+.-+.++.+...
T Consensus 174 fqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 174 FQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh
Confidence 44466677777777777777777777777777877766554
No 102
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.42 E-value=49 Score=23.94 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhcC
Q 021645 295 LFVLTFSILFLDWYS 309 (309)
Q Consensus 295 ~~~~~~~llfl~~~~ 309 (309)
+++++.+-||+||.+
T Consensus 14 ~ifVap~wl~lHY~~ 28 (75)
T TIGR02976 14 VIFVAPLWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334456667888863
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.13 E-value=3.5e+02 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 240 ALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 240 ~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
+.-.++...+.+-...|..+...-......+.....++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555655655555555555555555543
No 104
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=30.71 E-value=2.2e+02 Score=22.60 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHH
Q 021645 48 TKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDIL 104 (309)
Q Consensus 48 ~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L 104 (309)
.++..++..++.++...|..+ +.....+..+.+.++.-...+|+.....|+.-
T Consensus 5 ~kEi~~l~~~lk~~~~~i~ai----lek~~s~~~~~e~lEsiAAKIIkDisdkIdkC 57 (121)
T PF03310_consen 5 IKEISELIQELKKIESDIKAI----LEKLQSTEQDQENLESIAAKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555566666666666555 33322233344444544455555444444433
No 105
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=30.67 E-value=70 Score=19.61 Aligned_cols=19 Identities=16% Similarity=0.611 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
+.+.+++|+++.+||-.|+
T Consensus 17 LY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4445556666777776664
No 106
>PRK14749 hypothetical protein; Provisional
Probab=30.12 E-value=78 Score=18.53 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
||+.+.+.|+|.+|-.-|+
T Consensus 6 WiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 6 WFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667777788888776665
No 107
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=29.97 E-value=46 Score=33.01 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 021645 256 IEHLYEQAVEATKNVELGNKELSQAIRRNTS 286 (309)
Q Consensus 256 id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~ 286 (309)
+..+...+++|.++++++|+-|.+......+
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~ 470 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVNPGISS 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4566677788888888888888866654443
No 108
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=29.85 E-value=1.6e+02 Score=27.24 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSIN 109 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~ 109 (309)
..+-++++.+..+.+..+..-|..+|..|.+...-+.+....--..++.++..|...+..|+..+.
T Consensus 250 LGPAa~Rlle~y~~l~klL~nL~~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~ 315 (325)
T PF06694_consen 250 LGPAANRLLELYKMLLKLLGNLATLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLA 315 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhH
Confidence 345566777777777788888888899998763222211111234677889999888888887664
No 109
>PHA03240 envelope glycoprotein M; Provisional
Probab=29.52 E-value=49 Score=28.92 Aligned_cols=16 Identities=6% Similarity=0.658 Sum_probs=8.0
Q ss_pred HHHHHHHH-HHHHHHHH
Q 021645 290 FLLLFLFV-LTFSILFL 305 (309)
Q Consensus 290 ~i~~~~~~-~~~~llfl 305 (309)
||++++++ .+|+|+||
T Consensus 215 WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 215 WIFIAIIIIIVIILFFF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55544444 44555554
No 110
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.41 E-value=6.4e+02 Score=25.89 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhccCCccC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQ---IDILQNSINDDEANSKGWLG 120 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~---I~~L~~~~~~~~~~~~~~~g 120 (309)
.......|..+...+..+...|.+++ ..++.++...+.+++.. |..|++.|......
T Consensus 141 R~~vl~~A~~La~~~n~~~~~L~~~~--------------~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~------ 200 (627)
T PRK06665 141 RQVVLERAQSLGERIHDRYRSLERIR--------------DMANDEIEITVEEINNILRNIADLNEQIVKSQAM------ 200 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 45778888888888888888877773 34455555555555554 44455555422111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH
Q 021645 121 RKGDNSNADTIAHKHGVVLILSE 143 (309)
Q Consensus 121 ~~~~~~~~~~~~h~~~Vv~~L~~ 143 (309)
+....+....|+..+.-|..
T Consensus 201 ---g~~~ndLlDqRD~ll~eLS~ 220 (627)
T PRK06665 201 ---GDNPNDLLDRRDLLVDKLSS 220 (627)
T ss_pred ---CCCchhhHHHHHHHHHHHHh
Confidence 11235667777766655553
No 111
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.03 E-value=40 Score=25.74 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 021645 289 TFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 289 ~~i~~~~~~~~~~llfl~~~ 308 (309)
-|+.++.++|.++||++-||
T Consensus 64 ili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYY 83 (101)
T ss_pred hHHHHHHHHHHHHHHhhheE
Confidence 34545555555566655544
No 112
>PRK11637 AmiB activator; Provisional
Probab=28.95 E-value=5.3e+02 Score=24.83 Aligned_cols=80 Identities=8% Similarity=0.035 Sum_probs=45.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 021645 207 QQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTS 286 (309)
Q Consensus 207 ~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~ 286 (309)
++.++++-..+...+.+-..++..++..+.++..=...+...+..-...|+.++..+......+.....+|.+....-+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443344444555555555666666555555555555566666666666666666666666666666666554443
No 113
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=2.7e+02 Score=21.33 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 209 LLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKEL 277 (309)
Q Consensus 209 ~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L 277 (309)
+++.-|......+.+--.-.+++..++.||+.=|+.|+-++.+ ||-|++ ++..++.|..-|
T Consensus 55 LLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQ----IDaidd----st~kLEaAa~~L 115 (120)
T KOG4559|consen 55 LLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQ----IDAIDD----STDKLEAAAAKL 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH----HHHHhh----HHHHHHHHHHHH
Confidence 4555666555666666666677888899999999999998843 555544 344455554333
No 114
>PRK04406 hypothetical protein; Provisional
Probab=28.67 E-value=2.2e+02 Score=20.41 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=33.3
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVEL 272 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~ 272 (309)
.+..+|..+.-.-....+|...|.+|...|+++...+......+..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777788888888888888776666555543
No 115
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.37 E-value=2e+02 Score=19.60 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 254 QQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 254 e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
..|+.|..++......|..+..|-..|..|
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 116
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.88 E-value=6e+02 Score=25.06 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhccCCccC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQID---ILQNSINDDEANSKGWLG 120 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~---~L~~~~~~~~~~~~~~~g 120 (309)
...+...|..+...+..+...|.+++ +.++.++...+.+++..++ .|++.|......
T Consensus 124 R~~vl~~a~~L~~~~n~~~~~L~~~~--------------~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~------ 183 (483)
T PRK07521 124 AQAAVDAAQDLANSLNDASDAVQSAR--------------ADADAEIADSVDTLNDLLAQFEDANNAVVSGTAT------ 183 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------
Confidence 45778888888888888888777773 3455556555555555544 444444322111
Q ss_pred CCCCCCchhHHHHHHHHHHHHH
Q 021645 121 RKGDNSNADTIAHKHGVVLILS 142 (309)
Q Consensus 121 ~~~~~~~~~~~~h~~~Vv~~L~ 142 (309)
+....+....|+..+.-|.
T Consensus 184 ---g~~~ndL~DqRD~ll~~LS 202 (483)
T PRK07521 184 ---GRDASDALDQRDKLLKQIS 202 (483)
T ss_pred ---CCCchhhHHHHHHHHHHHH
Confidence 1123556667766655544
No 117
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=27.84 E-value=1.1e+02 Score=20.07 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=8.5
Q ss_pred HHHHHHHcchhhhHHH
Q 021645 277 LSQAIRRNTSSRTFLL 292 (309)
Q Consensus 277 L~ka~~~~~~~r~~i~ 292 (309)
.+.+.++-++++..++
T Consensus 5 ~~~~~~~f~~nk~a~~ 20 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVI 20 (56)
T ss_pred HHHHHHHHHhCchHHH
Confidence 3455555666665433
No 118
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=27.16 E-value=3.1e+02 Score=26.04 Aligned_cols=45 Identities=4% Similarity=-0.069 Sum_probs=28.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 230 QTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGN 274 (309)
Q Consensus 230 ~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~ 274 (309)
.+...+.+-..+|..+...+..-||.--++++.......+.+.-.
T Consensus 112 sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~~~ 156 (399)
T TIGR02120 112 SLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEERQ 156 (399)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 355555555556777666666667777777777777766665543
No 119
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=27.07 E-value=1.5e+02 Score=20.29 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=7.4
Q ss_pred HHHHHHHHHHcchhh
Q 021645 274 NKELSQAIRRNTSSR 288 (309)
Q Consensus 274 ~~~L~ka~~~~~~~r 288 (309)
.+-|.|-.++++.++
T Consensus 30 ~eil~ker~R~r~~~ 44 (64)
T COG4068 30 GEILNKERKRQRNFM 44 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555443
No 120
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=26.61 E-value=1.4e+02 Score=21.47 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 254 QQIEHLYEQAVEATKNVELGNKELS 278 (309)
Q Consensus 254 e~id~I~~~~~~a~~~v~~g~~~L~ 278 (309)
..+++|.+.+.+|..|++.|...|.
T Consensus 9 DNVEkLQ~mi~nTieNi~eAee~l~ 33 (73)
T PRK03830 9 DNVEKLQEMIQNTIENIEEAEETIA 33 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999999988884
No 121
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=5.1e+02 Score=23.85 Aligned_cols=59 Identities=7% Similarity=-0.013 Sum_probs=38.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 212 DETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 212 ~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
++.......++++..++-.|= .+|+.|..+=.+.+.-=++.+|.++-|++.|...+-+=
T Consensus 223 Q~R~~~~q~IEstIsElG~IF---~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy 281 (311)
T KOG0812|consen 223 QERAKTMQNIESTISELGGIF---QQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKY 281 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
Confidence 344334566666666666664 44555555555566666788888999998887766553
No 122
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=26.01 E-value=3.4e+02 Score=25.73 Aligned_cols=46 Identities=7% Similarity=0.089 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 224 LLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKN 269 (309)
Q Consensus 224 r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~ 269 (309)
+..+=..+...+.+...+|..+...+..-||.-.++++.......+
T Consensus 104 ~l~~G~sls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~ 149 (399)
T PRK10573 104 QLEQGEAFSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQ 149 (399)
T ss_pred HHHCCccHHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3333334566666666666665554555676666666666655554
No 123
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=25.69 E-value=69 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q 021645 288 RTFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 288 r~~i~~~~~~~~~~llfl~~~ 308 (309)
--+++.+++++.++++.+++|
T Consensus 24 s~li~~~LilfviF~~~L~~y 44 (83)
T PF05814_consen 24 SELIITLLILFVIFFCVLQVY 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666654
No 124
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=25.57 E-value=92 Score=20.68 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhc
Q 021645 287 SRTFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 287 ~r~~i~~~~~~~~~~llfl~~~ 308 (309)
-|+|++.|++.++|.+..+-+|
T Consensus 21 P~ww~~~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 21 PRWWLWLFYGTIVFAVGYLVLY 42 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666555443
No 125
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.22 E-value=68 Score=23.20 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhcC
Q 021645 297 VLTFSILFLDWYS 309 (309)
Q Consensus 297 ~~~~~llfl~~~~ 309 (309)
+++.+-||+||.+
T Consensus 16 fVap~WL~lHY~s 28 (75)
T PF06667_consen 16 FVAPIWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3445667888853
No 126
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=25.15 E-value=1e+02 Score=22.01 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 021645 300 FSILFLDW 307 (309)
Q Consensus 300 ~~llfl~~ 307 (309)
++.|++.|
T Consensus 31 I~pll~~~ 38 (72)
T PF13198_consen 31 ISPLLFVW 38 (72)
T ss_pred HHHHHHHH
Confidence 33344444
No 127
>CHL00066 psbH photosystem II protein H
Probab=25.11 E-value=91 Score=22.29 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 021645 292 LLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 292 ~~~~~~~~~~llfl~~~~ 309 (309)
+++.+.++|++++|.-||
T Consensus 45 v~m~lf~vfl~iiLeiyN 62 (73)
T CHL00066 45 VAMALFAVFLSIILEIYN 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334445567777777665
No 128
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=25.07 E-value=1.7e+02 Score=21.64 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 243 HLMSTHILHQAQQIEHLYEQAVEATKNVE 271 (309)
Q Consensus 243 ~~l~~~V~~Q~e~id~I~~~~~~a~~~v~ 271 (309)
..+...+...++.-.++.+-.......+.
T Consensus 60 ~~~~~~~~~~~~~g~~~~~~l~~~a~~~~ 88 (124)
T PF00482_consen 60 PDFVASLIQAGESGGDLSEVLEQLADQLR 88 (124)
T ss_dssp -HHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 34444444444443344444444333333
No 129
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=24.84 E-value=2.7e+02 Score=20.11 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHL---MSTHILHQAQQIEHLYEQAVEAT 267 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~---l~~~V~~Q~e~id~I~~~~~~a~ 267 (309)
..++.-.+.|-.++.++.++..-+.. +...+..|...++.+...+.+..
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666655544 66778888888888887665544
No 130
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.20 E-value=6e+02 Score=23.86 Aligned_cols=25 Identities=20% Similarity=0.008 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 252 QAQQIEHLYEQAVEATKNVELGNKE 276 (309)
Q Consensus 252 Q~e~id~I~~~~~~a~~~v~~g~~~ 276 (309)
..+.++.++.++.++...+..+...
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 4445555555555555444444433
No 131
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=24.14 E-value=2e+02 Score=21.23 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHh
Q 021645 271 ELGNKELSQAIRRNTSSRTFLLLFLFVLTFSILFLD 306 (309)
Q Consensus 271 ~~g~~~L~ka~~~~~~~r~~i~~~~~~~~~~llfl~ 306 (309)
+.+...|+..-.+-....+..+++.+.++|.+|.+-
T Consensus 9 ~~~~~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly 44 (85)
T PF13150_consen 9 DRADDRLRRYCGRLSPKQRLRVVLVMLVLFAALCLY 44 (85)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666666666655556655543
No 132
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=24.11 E-value=97 Score=22.18 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 021645 292 LLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 292 ~~~~~~~~~~llfl~~~~ 309 (309)
+++.+.++|++++|.-||
T Consensus 45 ~~m~lf~vfl~iileiyN 62 (73)
T PLN00055 45 VAMALFAVFLSIILEIYN 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334445567777777665
No 133
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=23.66 E-value=2.3e+02 Score=18.83 Aligned_cols=49 Identities=8% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNK 275 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~ 275 (309)
.|..+..-..+|+.+..+=+.+|..=+..+++...++..+...+..+..
T Consensus 12 ~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 12 SIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455556666666667777777777766666543
No 134
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=23.41 E-value=4e+02 Score=21.55 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=35.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 230 QTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 230 ~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
.+...|.+|+.+..+++.+-..-.+.|++|.........-+..--..|...+
T Consensus 4 ~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l 55 (149)
T PF07352_consen 4 EADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLL 55 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777777888887777777666666655555544
No 135
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.38 E-value=86 Score=22.91 Aligned_cols=22 Identities=9% Similarity=0.341 Sum_probs=14.7
Q ss_pred HHHHHHHHcchhhhHHHHHHHH
Q 021645 276 ELSQAIRRNTSSRTFLLLFLFV 297 (309)
Q Consensus 276 ~L~ka~~~~~~~r~~i~~~~~~ 297 (309)
+...|.+..+++|+|-++-+++
T Consensus 52 d~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 52 DYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred CHHHHHHHHHHhHHHHHHHHHH
Confidence 4667778888888876554443
No 136
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.16 E-value=7.8e+02 Score=27.00 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCch
Q 021645 49 KAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNA 128 (309)
Q Consensus 49 ~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~ 128 (309)
.++.++...+...+.-+++++..+-...+.-.+.+.+.+.+++........+++.|+..+.+..
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e---------------- 414 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE---------------- 414 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 129 DTIAHKHGVVLILSEKLHSVTAQFDQMRAIR 159 (309)
Q Consensus 129 ~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R 159 (309)
.++..|...+..+....++.++..
T Consensus 415 -------~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 415 -------EQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhHHHH
No 137
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=23.03 E-value=3e+02 Score=19.89 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Q 021645 244 LMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTS 286 (309)
Q Consensus 244 ~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~ 286 (309)
++++-|.+=...+++++.+++.+...+..+..+=.+|..+.-.
T Consensus 29 qlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 29 QLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 3444444445566778888888888888887777777665443
No 138
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=22.88 E-value=8.8e+02 Score=25.28 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 130 TIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDA 163 (309)
Q Consensus 130 ~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~ 163 (309)
....-+.|+..|..-+-+.++.+-+|++.|.+..
T Consensus 124 ~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp 157 (683)
T PF08580_consen 124 WEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSP 157 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4677788999999999999999999999987654
No 139
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.85 E-value=75 Score=23.65 Aligned_cols=15 Identities=20% Similarity=0.667 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhc
Q 021645 294 FLFVLTFSILFLDWY 308 (309)
Q Consensus 294 ~~~~~~~~llfl~~~ 308 (309)
+.+++.|+++.+-|+
T Consensus 38 lvI~~iFil~Vilwf 52 (94)
T PF05393_consen 38 LVICGIFILLVILWF 52 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344555555553
No 140
>PRK13751 putative mercuric transport protein; Provisional
Probab=22.46 E-value=64 Score=25.42 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhc
Q 021645 286 SSRTFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 286 ~~r~~i~~~~~~~~~~llfl~~~ 308 (309)
+..+.++|+..++.+++|++.|+
T Consensus 89 k~~k~~~Wi~~vlvl~~L~fPy~ 111 (116)
T PRK13751 89 ATYKLIFWIVAALVLVALGFPYV 111 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHH
Confidence 33556777777777777777664
No 141
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=22.38 E-value=97 Score=22.84 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 021645 292 LLFLFVLT 299 (309)
Q Consensus 292 ~~~~~~~~ 299 (309)
..++++++
T Consensus 28 MtILivLV 35 (85)
T PF10717_consen 28 MTILIVLV 35 (85)
T ss_pred HHHHHHHH
Confidence 33444433
No 142
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=22.31 E-value=4e+02 Score=21.12 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 218 QVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQA 280 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka 280 (309)
+..+++-...|..|...|..|..+...+.+-.....+.=++++..+..+...+..-+..|...
T Consensus 5 ~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l 67 (151)
T cd00179 5 FEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKEL 67 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777777777777777666544223344455555555555554444444443
No 143
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.25 E-value=4.5e+02 Score=21.66 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQERDSIEHEVTAFIKTCKEQIDILQN 106 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~erd~id~ei~~~i~~~~~~I~~L~~ 106 (309)
...+-.+..++...+..+...+..++...-.. ..|+.++......++..-+.....++..|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666664433222 3566666665555555555555555555544
No 144
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=21.96 E-value=6.3e+02 Score=23.30 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHH---HHHHHHHHhh
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKE---QIDILQNSIN 109 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~---~I~~L~~~~~ 109 (309)
...+...|+.+...+..+...|..++. .++.++...+.+++. .|..|++.|.
T Consensus 129 r~~vl~~a~~l~~~~n~~~~~L~~~~~--------------~~~~~i~~~V~~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 129 RQAVLESAQALANSFNQTSNELQDLRK--------------GINAEIKSAVTEINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888888888888887743 344555555555444 4555555554
No 145
>PF14142 YrzO: YrzO-like protein
Probab=21.84 E-value=2.2e+02 Score=17.91 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 236 VEVSALNHLMSTHILHQAQQIEHLYEQA 263 (309)
Q Consensus 236 ~ei~~l~~~l~~~V~~Q~e~id~I~~~~ 263 (309)
-|++.+-..=-..|.+|.|+|+-+.++-
T Consensus 15 celaainrngrk~ikqqaeliqllkel~ 42 (46)
T PF14142_consen 15 CELAAINRNGRKKIKQQAELIQLLKELK 42 (46)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3566666666677888999988776554
No 146
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.66 E-value=7.9e+02 Score=24.31 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 221 LTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVE 271 (309)
Q Consensus 221 ~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~ 271 (309)
+..-.+.+..|...+.++...+.+++..+.+|...++.|..++++......
T Consensus 433 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 433 VESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677888889999999999999999999999988888776665554
No 147
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=21.60 E-value=4.7e+02 Score=21.61 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=39.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHhcc-------cCCChHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 49 KAALKTLESIGALEQFILNHRKDYVEM-------QRTTEQERDSIEHEVTAFIKTCKEQIDILQN 106 (309)
Q Consensus 49 ~~a~~I~~~I~~l~~~l~~lr~~yl~~-------~~~~~~erd~id~ei~~~i~~~~~~I~~L~~ 106 (309)
+-+..+..........|+.+|..+... ...+.++-..++.++..+...+...|+.+-.
T Consensus 94 ~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 158 (165)
T PF01765_consen 94 ELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLK 158 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777788888888888775 1267777777888888888866555555533
No 148
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=21.45 E-value=1.2e+02 Score=20.94 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 021645 292 LLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 292 ~~~~~~~~~~llfl~~~~ 309 (309)
+++.+.++|+++++.-||
T Consensus 33 v~m~Lf~vFl~iiLeIYN 50 (64)
T PRK02624 33 VFMVLFLVFLLIILQIYN 50 (64)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344445567777777665
No 149
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=21.36 E-value=2.3e+02 Score=25.89 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=18.8
Q ss_pred HHHHHHHcchhhhHH-HHHHHHHHHHHHHHhh
Q 021645 277 LSQAIRRNTSSRTFL-LLFLFVLTFSILFLDW 307 (309)
Q Consensus 277 L~ka~~~~~~~r~~i-~~~~~~~~~~llfl~~ 307 (309)
+..+..|+=.|=|++ +++.+++=|+|||+-+
T Consensus 162 ~lnylARNFYNlr~lALflAFaINFILLFYKV 193 (274)
T PF06459_consen 162 FLNYLARNFYNLRFLALFLAFAINFILLFYKV 193 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555554 4444566799999854
No 150
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=20.78 E-value=5.4e+02 Score=22.00 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=18.8
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEAT 267 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~ 267 (309)
.+..+...+.+|+.....++..+.++...++.|...+.+..
T Consensus 194 ~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 234 (262)
T smart00283 194 SVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETA 234 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 151
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.73 E-value=2.8e+02 Score=18.76 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=10.8
Q ss_pred HHHHHHHHhcHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLM 245 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l 245 (309)
-+.+..|+..+.+|-.|+..+
T Consensus 27 ~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 27 SESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 152
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.57 E-value=1.6e+02 Score=17.07 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
||+.+++.++|.++-.-|+
T Consensus 6 WilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 6 WILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666666677777765554
No 153
>PRK00846 hypothetical protein; Provisional
Probab=20.57 E-value=3.4e+02 Score=19.67 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=34.9
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
..+..+|..+.--......|...|..|...|+++...+..-...++..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777777788888888888888777766666554
No 154
>PF00695 vMSA: Major surface antigen from hepadnavirus; InterPro: IPR000349 This family contains the major surface antigens of the hepatitus viruses (Hepadnaviridae). The protein is most likely required for an early step of the life cycle involving entry or uncoating of virus particles.; GO: 0016032 viral reproduction; PDB: 1KCR_P 1WZ4_A 2EH8_P 1KC5_P.
Probab=20.56 E-value=33 Score=32.02 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=0.0
Q ss_pred HHHHHHHHHhh
Q 021645 297 VLTFSILFLDW 307 (309)
Q Consensus 297 ~~~~~llfl~~ 307 (309)
+++|+++.+||
T Consensus 235 ~~~~l~~~~~~ 245 (364)
T PF00695_consen 235 CLIFLLVLLDY 245 (364)
T ss_dssp -----------
T ss_pred HHHHHHHHhcc
Confidence 34666777776
No 155
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.29 E-value=4.4e+02 Score=20.77 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHH
Q 021645 224 LLDAVQQTETKMVEVSALNHLMSTHI 249 (309)
Q Consensus 224 r~~~v~~ie~~i~ei~~l~~~l~~~V 249 (309)
--++|+.=.+-+..+..=|...+..+
T Consensus 55 Ig~Ev~~qnklld~mdddfdsts~~L 80 (118)
T KOG3385|consen 55 IGDEVRTQNKLLDGMDDDFDSTSGFL 80 (118)
T ss_pred hccccchHHHHHHHhccchhhhHHHH
Confidence 34566666666666666666655555
No 156
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=20.27 E-value=83 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhc
Q 021645 287 SRTFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 287 ~r~~i~~~~~~~~~~llfl~~~ 308 (309)
.++.++++..++++++|.+.||
T Consensus 90 ~~~~~lwi~t~~vl~~l~~py~ 111 (116)
T PF02411_consen 90 QTKILLWIVTVLVLLLLAFPYY 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777775
No 157
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=20.19 E-value=9.7e+02 Score=24.76 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhccCCccC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKE---QIDILQNSINDDEANSKGWLG 120 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~---~I~~L~~~~~~~~~~~~~~~g 120 (309)
...++..|+.+...+..+...|.+++ +.++.++...+.+++. .|..|++.+.. |
T Consensus 129 Rq~vl~~A~~L~~~fn~~~~~L~~~~--------------~~~n~~I~~~V~~iN~l~~qIA~LN~qI~~---------~ 185 (649)
T PRK12715 129 RGVVLKQSQLLAQQFNSLQTKLEEYE--------------RNSTLQVTESVKIINRITKELAEVNGKLLG---------N 185 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------C
Confidence 45788888888888888888888874 3445555555554444 44455554421 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH
Q 021645 121 RKGDNSNADTIAHKHGVVLILSE 143 (309)
Q Consensus 121 ~~~~~~~~~~~~h~~~Vv~~L~~ 143 (309)
....+....|+..+.-|..
T Consensus 186 ----~~~ndLlDqRD~ll~eLS~ 204 (649)
T PRK12715 186 ----NNIPELLDHRDELLKQLSG 204 (649)
T ss_pred ----CCchHhHHHHHHHHHHHHh
Confidence 0224566666666554443
Done!