Query 021645
Match_columns 309
No_of_seqs 149 out of 876
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 99.9 1.2E-26 4E-31 210.5 8.7 232 40-288 39-279 (279)
2 1dn1_B Syntaxin 1A, syntaxin b 99.9 1E-25 3.5E-30 202.7 11.4 232 39-293 25-267 (267)
3 3hd7_B Syntaxin-1A; membrane p 99.9 1.5E-22 5.2E-27 157.4 13.5 88 216-303 11-98 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.8 8.2E-21 2.8E-25 138.5 10.5 76 218-293 2-77 (77)
5 2nps_B Syntaxin 13, vesicle-as 99.8 1.4E-19 4.9E-24 129.8 9.4 69 223-291 3-71 (71)
6 3b5n_B Protein SSO1; snare com 99.8 2.3E-18 7.9E-23 122.7 10.9 68 218-285 2-69 (69)
7 1sfc_B Protein (syntaxin 1A), 99.8 2.2E-18 7.4E-23 127.4 10.7 71 218-288 13-83 (83)
8 3c98_B Syntaxin-1A; protein co 99.7 6.2E-19 2.1E-23 158.4 5.4 258 2-293 11-279 (279)
9 1n7s_B Syntaxin 1A; neuronal s 99.7 4.5E-17 1.5E-21 115.7 10.4 64 218-281 4-67 (68)
10 1gl2_B Syntaxin 7; membrane pr 99.7 5.3E-17 1.8E-21 114.2 8.2 63 220-282 3-65 (65)
11 1fio_A SSO1 protein; four heli 99.6 2.3E-15 7.8E-20 129.2 7.5 178 44-253 4-196 (196)
12 1ez3_A Syntaxin-1A; three heli 98.8 3E-07 1E-11 72.8 15.3 111 44-164 7-123 (127)
13 1s94_A S-syntaxin; three helix 98.3 4.4E-06 1.5E-10 70.1 11.8 140 3-162 6-152 (180)
14 2nps_D Syntaxin-6; vesicle fus 96.5 0.01 3.5E-07 42.9 7.6 64 225-288 18-81 (82)
15 3hd7_A Vesicle-associated memb 96.4 0.12 4E-06 37.9 12.7 43 226-268 5-47 (91)
16 1n7s_C SNAP-25A; neuronal snar 96.4 0.092 3.2E-06 37.5 11.7 69 208-279 8-76 (79)
17 1n7s_D SNAP-25A; neuronal snar 96.3 0.042 1.5E-06 37.7 9.6 55 225-279 9-63 (66)
18 2dnx_A Syntaxin-12; snare, HAB 96.2 0.23 7.9E-06 38.8 14.5 113 41-165 6-120 (130)
19 3hd7_B Syntaxin-1A; membrane p 96.2 0.25 8.7E-06 37.4 14.1 78 219-300 21-98 (109)
20 1sfc_D Protein (SNAP-25B), pro 96.0 0.076 2.6E-06 38.6 10.1 54 226-279 29-82 (87)
21 1gl2_D Syntaxin 8, vesicle tra 95.9 0.036 1.2E-06 38.0 7.3 55 225-279 8-62 (65)
22 1l4a_D S-SNAP25 fusion protein 95.7 0.069 2.3E-06 38.9 8.5 55 225-279 29-83 (87)
23 1nhl_A Synaptosomal-associated 95.7 0.084 2.9E-06 34.7 8.2 40 239-278 13-52 (54)
24 1mqs_B SED5P, integral membran 95.4 0.0041 1.4E-07 40.1 0.9 21 2-22 6-26 (50)
25 3b5n_D Protein transport prote 95.2 0.2 6.7E-06 34.2 9.0 53 227-279 11-63 (64)
26 1l4a_C S-SNAP25 fusion protein 93.7 0.41 1.4E-05 34.3 8.2 54 224-277 25-78 (83)
27 3b5n_C Protein transport prote 93.0 1.5 5.2E-05 30.3 11.3 35 247-281 33-67 (70)
28 4dnd_A Syntaxin-10, SYN10; str 92.2 2.2 7.4E-05 33.2 11.2 102 43-150 25-126 (130)
29 1gl2_C VTI1B, vesicle transpor 91.8 1.1 3.9E-05 30.4 8.0 52 227-278 10-61 (65)
30 2kog_A Vesicle-associated memb 76.3 0.18 6.3E-06 38.8 -2.6 38 228-265 35-72 (119)
31 2c5k_T Syntaxin TLG1, T-snare 75.7 20 0.0007 26.0 9.4 87 44-152 5-91 (95)
32 2nps_C Vesicle transport throu 75.3 19 0.00064 25.3 10.3 60 224-283 17-76 (81)
33 1sfc_A VAMP 2, protein (synapt 63.9 39 0.0013 24.5 9.2 42 226-267 30-71 (96)
34 3twe_A Alpha4H; unknown functi 56.1 19 0.00064 19.1 3.5 21 51-71 3-23 (27)
35 1wlq_A Geminin; coiled-coil; 2 48.6 57 0.0019 23.0 6.1 44 212-259 38-81 (83)
36 4gwp_A Mediator of RNA polymer 47.4 59 0.002 24.4 6.4 65 220-284 5-73 (115)
37 1n7s_A Vesicle-associated memb 47.1 58 0.002 21.4 8.4 43 226-268 4-46 (63)
38 2nps_B Syntaxin 13, vesicle-as 46.7 64 0.0022 21.7 8.4 60 221-280 8-67 (71)
39 3n27_A Fusion glycoprotein F0, 46.7 71 0.0024 22.3 6.5 65 217-283 11-75 (80)
40 2nps_A VAMP-4, vesicle-associa 46.3 67 0.0023 21.9 7.3 40 227-266 9-48 (74)
41 2k48_A Nucleoprotein; viral pr 45.9 87 0.003 23.0 8.1 64 79-150 33-96 (107)
42 3f6n_A Virion-associated prote 44.6 47 0.0016 25.1 5.5 52 46-101 6-57 (129)
43 1l4a_A Synaptobrevin; snare, s 43.6 47 0.0016 23.1 5.2 38 228-265 17-54 (80)
44 3b5n_A Synaptobrevin homolog 1 43.5 66 0.0023 21.0 8.2 40 227-266 3-42 (61)
45 1gl2_A Endobrevin; membrane pr 37.3 88 0.003 20.6 7.1 43 225-267 8-50 (65)
46 3b5n_B Protein SSO1; snare com 37.3 91 0.0031 20.8 10.0 53 223-275 14-66 (69)
47 3efg_A Protein SLYX homolog; x 36.9 1E+02 0.0035 21.3 6.9 48 227-274 15-62 (78)
48 1urq_A M-tomosyn isoform; tran 36.2 93 0.0032 20.6 7.2 40 227-266 5-44 (63)
49 1n7s_B Syntaxin 1A; neuronal s 33.6 1E+02 0.0036 20.4 9.5 52 223-274 16-67 (68)
50 3arc_L Photosystem II reaction 33.3 38 0.0013 19.8 2.7 19 290-308 17-35 (37)
51 3g67_A Methyl-accepting chemot 33.1 2.1E+02 0.0072 23.7 11.2 40 228-267 167-206 (213)
52 3k4t_A Virion-associated prote 32.5 1.4E+02 0.0047 21.4 7.0 48 46-97 6-60 (95)
53 3zx6_A HAMP, methyl-accepting 31.8 2.7E+02 0.0092 24.6 12.4 55 219-273 220-274 (341)
54 4emc_A Monopolin complex subun 31.6 2.1E+02 0.0073 23.3 10.1 59 207-265 22-80 (190)
55 1jcd_A Major outer membrane li 31.5 1E+02 0.0035 19.6 7.1 39 245-283 9-47 (52)
56 1jth_B Syntaxin 1A; coiled-coi 29.3 1.4E+02 0.0046 20.3 9.5 61 221-281 12-72 (77)
57 1qu7_A Methyl-accepting chemot 25.2 2.9E+02 0.01 22.9 10.5 46 225-270 146-191 (227)
58 2p2u_A HOST-nuclease inhibitor 24.7 2.6E+02 0.009 22.2 9.1 52 230-281 17-68 (171)
59 2ic6_A Nucleocapsid protein; h 24.0 1.8E+02 0.0063 20.1 8.6 61 82-150 6-66 (78)
60 3na7_A HP0958; flagellar bioge 22.3 3.5E+02 0.012 22.7 11.1 61 219-279 25-85 (256)
61 2wvr_A Geminin; DNA replicatio 21.2 3.2E+02 0.011 22.6 7.1 45 212-260 115-159 (209)
62 1sfc_B Protein (syntaxin 1A), 20.9 2.1E+02 0.0072 19.7 9.7 58 220-277 22-79 (83)
63 2kog_A Vesicle-associated memb 20.5 2.1E+02 0.0073 21.4 5.7 9 221-229 38-46 (119)
64 3ghg_A Fibrinogen alpha chain; 20.1 5.5E+02 0.019 24.4 9.5 72 214-285 59-130 (562)
65 3g67_A Methyl-accepting chemot 20.1 3.7E+02 0.013 22.2 12.4 20 243-262 168-187 (213)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.93 E-value=1.2e-26 Score=210.48 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=146.6
Q ss_pred CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHh----hHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021645 40 KPRERSSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQE----RDS---IEHEVTAFIKTCKEQIDILQNSINDD 111 (309)
Q Consensus 40 ~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~e----rd~---id~ei~~~i~~~~~~I~~L~~~~~~~ 111 (309)
....++.|+..+.+|...|..+...+.+|...+-.. ..+.+++ +.+ +..+++..++.|...|+.|+...+..
T Consensus 39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~ 118 (279)
T 2xhe_B 39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA 118 (279)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578999999999999999999999997776543 2244544 444 44688888999999999999877643
Q ss_pred hhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCC
Q 021645 112 EANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSD 191 (309)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 191 (309)
... ++| ..+ .+.+..+|+.+++..|..+|++++..|+++|..|.++.+.+..+ +....+..+.+ ...+
T Consensus 119 ~~~-~~~---~~~-~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R---~~~i~~~~~~~----ee~~ 186 (279)
T 2xhe_B 119 QQE-GTF---EDG-TVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR---QCRVVEPSLSD----DAIQ 186 (279)
T ss_dssp HHH-HCC---STT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---SCCSSCCCCSS----TTHH
T ss_pred hhc-ccc---cCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCCCH----HHHH
Confidence 221 111 111 12224589999999999999999999999999999987765431 22222111000 0000
Q ss_pred -ccccccCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 192 -IRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNV 270 (309)
Q Consensus 192 -~~~~~~~~~~~~~~q~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v 270 (309)
...... +. ...|. ..+.....+.++++|+++|++||++|.||++||.+|+.||.+||++||+|++|++.|..||
T Consensus 187 ~~~e~g~--~~-~f~q~--~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v 261 (279)
T 2xhe_B 187 KVIEHGT--EG-IFSGM--RLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYV 261 (279)
T ss_dssp HHHHHC----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC
T ss_pred HHHhCCc--hH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 000000 00 01111 1112223357899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcchhh
Q 021645 271 ELGNKELSQAIRRNTSSR 288 (309)
Q Consensus 271 ~~g~~~L~ka~~~~~~~r 288 (309)
+.|+.+|.||.+|++++|
T Consensus 262 ~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 262 KKATEQVVQARHYQESAR 279 (279)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHhHccC
Confidence 999999999999999986
No 2
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.93 E-value=1e-25 Score=202.71 Aligned_cols=232 Identities=10% Similarity=0.135 Sum_probs=152.0
Q ss_pred CCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc---cCCChHhhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021645 39 HKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEM---QRTTEQERDSI---EHEVTAFIKTCKEQIDILQNSINDDE 112 (309)
Q Consensus 39 ~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~---~~~~~~erd~i---d~ei~~~i~~~~~~I~~L~~~~~~~~ 112 (309)
..+..++.|+..+.+|...|..+...+.+++..|-.. +......+++| ..+++..++.|...|+.|+.......
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~ 104 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 104 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455689999999999999999999999998777443 22223345544 46888889999999999988765321
Q ss_pred hccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCC-----CCC
Q 021645 113 ANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADI-----STP 187 (309)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~-----~~~ 187 (309)
. .. ++....+.+.+++..|..+|++++..|+.+|..|.++.+.+-.+ .+.+.+..+.+. ..+
T Consensus 105 ~-~~---------~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R---q~~i~~~~~tdeeie~~ie~ 171 (267)
T 1dn1_B 105 G-LN---------RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR---QLEITGRTTTSEELEDMLES 171 (267)
T ss_dssp H-TT---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTCCCCHHHHHHHHHT
T ss_pred c-cC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HhhccCCCCCHHHHHHHHhC
Confidence 1 00 12334577889999999999999999999999998877664321 122222111100 001
Q ss_pred CCCCccccccCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 188 NKSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEAT 267 (309)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~q~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~ 267 (309)
+.. .-++...... . ......+.++++|+++|.+||++|.||++||.+|+.||.+||++||+|++|++.|.
T Consensus 172 g~~-----~~f~q~~l~~-~----~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 172 GNP-----AIFASGIIMD-S----SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp CSS-----CTTTTTCCCC-S----HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred CcH-----HHHHHHHHHh-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 111 1111111000 0 11223468899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcchhhhHHHH
Q 021645 268 KNVELGNKELSQAIRRNTSSRTFLLL 293 (309)
Q Consensus 268 ~~v~~g~~~L~ka~~~~~~~r~~i~~ 293 (309)
.||+.|+.+|.+|.+|++++|+|.|+
T Consensus 242 ~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 242 DYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp CCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999999999999998875
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.89 E-value=1.5e-22 Score=157.37 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHH
Q 021645 216 ALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFL 295 (309)
Q Consensus 216 ~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~ 295 (309)
..++++++|++++++||++|.||++||.+|+++|.+||++||+|++|+++|..||+.|+.+|.||.+|++++|+|.|+++
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l 90 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHH
Q 021645 296 FVLTFSIL 303 (309)
Q Consensus 296 ~~~~~~ll 303 (309)
+++.++++
T Consensus 91 ~~~~i~~~ 98 (109)
T 3hd7_B 91 ICCVILGI 98 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76654443
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.84 E-value=8.2e-21 Score=138.52 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHH
Q 021645 218 QVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLL 293 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~ 293 (309)
+.++++|+++|.+||++|.||++||.+|+.+|.+||++||+|++|++.|..||+.|+.+|.||.+|++++|++.||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999998875
No 5
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.80 E-value=1.4e-19 Score=129.78 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHH
Q 021645 223 SLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFL 291 (309)
Q Consensus 223 ~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i 291 (309)
+|+++|.+||++|.||++||.+|+.||.+||++||+|++|++.|..||+.|+.+|.+|.+|++++|+|+
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999984
No 6
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.77 E-value=2.3e-18 Score=122.72 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021645 218 QVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNT 285 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~ 285 (309)
+..+++|++++++||++|.||++||.+|+.+|.+||++||+|++|++.|..||+.|+.+|.||.+|++
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999999999999999999999999999999999999875
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.77 E-value=2.2e-18 Score=127.36 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Q 021645 218 QVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSR 288 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r 288 (309)
+.++++|+++|.+||++|.||++||.+|+.||.+||++||+|++|++.|..||+.|+.+|.||.+|++++|
T Consensus 13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999886
No 8
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.75 E-value=6.2e-19 Score=158.42 Aligned_cols=258 Identities=11% Similarity=0.155 Sum_probs=152.2
Q ss_pred CccCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhhcCCCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc---cCC
Q 021645 2 ARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEM---QRT 78 (309)
Q Consensus 2 ~~~~DrT~~F~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~---~~~ 78 (309)
+..+|||.+|+.+......... .........++.|+.++.+|...|..+...+.++...+-.. +..
T Consensus 11 g~mkDr~~el~~~~~~~~~~~~-----------~~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~ 79 (279)
T 3c98_B 11 GSMKDRTQELRTAKDSDDDDDV-----------TVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP 79 (279)
T ss_dssp ---CCCCTTTC----------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CchHHHHHHHHHhhhcccccch-----------hhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4579999999987765543211 00112344588999999999999999999999997665443 222
Q ss_pred ChHh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 79 TEQE---RDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQM 155 (309)
Q Consensus 79 ~~~e---rd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~ 155 (309)
.... -+.+..+++.....|...+..|+.......... .......++.+.+..|...+..++..|.+.
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~----------~~~~~i~~~~~qtn~La~n~a~~~a~~~~~ 149 (279)
T 3c98_B 80 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN----------RSSADLRIRKTQHSTLSRKFVEVMSEYNAT 149 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 345556778888888888888877665432111 224567888899999999999999999999
Q ss_pred HHHHHHHHHHhcCccccccccccCCCCCC-----CCCCCCCccccccCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021645 156 RAIRFQDAINRAMPRRKLKRETVSKSADI-----STPNKSDIRELDEIQPEPLTVQQQLLDDETRALQVELTSLLDAVQQ 230 (309)
Q Consensus 156 q~~R~k~~~~~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~q~q~~~~en~~l~~~~~~r~~~v~~ 230 (309)
+..+.......-. +....++..+.+. ...+...... ...... .. .....+..++++.+++..
T Consensus 150 ~~~~~~vva~evr---~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-------~~~~~~~~i~~~~~~i~~ 216 (279)
T 3c98_B 150 QSDYRERCKGRIQ---RQLEITGRTTTSEELEDMLESGNPAIFA-SGIIMD--SS-------ISKQALSEIETRHSEIIK 216 (279)
T ss_dssp HHHHHHHHHHHHH---HHHHHHTCCCCHHHHHHHHHSCCTTSST-TTSCSC--SS-------STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHhhccCccchHHHHHHHhhhhHHHH-HHHHHH--HH-------HHHHHHHHHHHHHHHHHH
Confidence 9888765544331 1111111110000 0000000000 000000 00 011124667889999999
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHH
Q 021645 231 TETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLL 293 (309)
Q Consensus 231 ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~ 293 (309)
|+.+|.+|+++|.+|+.+|.+|++++++|+.|++.+..+|+.|+.+|.+|.++++++|||.|+
T Consensus 217 I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 217 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 9
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.72 E-value=4.5e-17 Score=115.73 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 218 QVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 218 ~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
+.++++|+++|++||++|.||++||.+|+.||.+||++||+|++|++.|..||+.|+.+|.||.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999999999995
No 10
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.69 E-value=5.3e-17 Score=114.20 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 220 ELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIR 282 (309)
Q Consensus 220 ~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~ 282 (309)
++++|++++++||++|.||++||.+|+.||.+||++||+|++|++.|..||+.|+.+|.||.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999999999999999863
No 11
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.58 E-value=2.3e-15 Score=129.15 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=123.0
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChH----hhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQ----ERDSIE---HEVTAFIKTCKEQIDILQNSINDDEANS 115 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~----erd~id---~ei~~~i~~~~~~I~~L~~~~~~~~~~~ 115 (309)
++.|+..+.+|...|..+...+.+|...|-.. ..+.++ .+++|+ .+++..++.|...|+.|+....
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~------ 77 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------ 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 46899999999999999999999998877663 233333 344444 6788888888888888876531
Q ss_pred CCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCcccc
Q 021645 116 KGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIREL 195 (309)
Q Consensus 116 ~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (309)
..+++.+++..|..+|++++..|+..|..|.++.+++-.+ ++... + |..+ . .+. .
T Consensus 78 --------------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~r--q~~i~-~--~~~~---~-~e~--~ 132 (196)
T 1fio_A 78 --------------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKR--QYMII-Q--PEAT---E-DEV--E 132 (196)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-C--TTCC---H-HHH--H
T ss_pred --------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhc-C--CCCC---H-HHH--H
Confidence 1267888999999999999999999999999988776532 22111 1 1000 0 000 0
Q ss_pred ccCC---CCcchHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 021645 196 DEIQ---PEPLTVQQQLLD----DETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQA 253 (309)
Q Consensus 196 ~~~~---~~~~~~q~q~~~----~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~ 253 (309)
..+. ......+ .++. ..-...+.++++|+++|++||++|.||++||.+|+.||.+||
T Consensus 133 ~~~~~~~~~~~f~~-~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 133 AAISDVGGQQIFSQ-ALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHTSHHHHHHHHHH-HTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHcCCchhHHHH-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 0000111 1111 111235688999999999999999999999999999999997
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=98.77 E-value=3e-07 Score=72.77 Aligned_cols=111 Identities=10% Similarity=0.184 Sum_probs=85.7
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhc---ccCCChHhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVE---MQRTTEQERDSIE---HEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~---~~~~~~~erd~id---~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
++.|+.++.+|...|..|...+.+|+..|-. .+......+.+++ .+++...+.|...|+.|++.......
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~---- 82 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG---- 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 6789999999999999999999999777643 3444444455554 67888888999999999887664221
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 118 WLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAI 164 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~ 164 (309)
+. .+....+.+.+++..|..+|++++..|+.++..|-++.+
T Consensus 83 ---~~---~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 83 ---LN---RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp ---TS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 113345888999999999999999999999999866543
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=98.35 E-value=4.4e-06 Score=70.14 Aligned_cols=140 Identities=11% Similarity=0.164 Sum_probs=81.4
Q ss_pred ccCCChHHHHHHHHHHHHhcCCChhHHHHhhhhhhcC-CCCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc---cCC
Q 021645 3 RIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIH-KPRERSSFTKAALKTLESIGALEQFILNHRKDYVEM---QRT 78 (309)
Q Consensus 3 ~~~DrT~~F~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~---~~~ 78 (309)
..+||.+++++....-. ..+.. ..... ....++.|+.++..|...|..+...+.+|+..|-.. +..
T Consensus 6 ~mkDRl~eL~~~~~~~~----~~~~~------~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~ 75 (180)
T 1s94_A 6 RTKDRLAALKAAVSDEE----DVEEV------AVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQT 75 (180)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred chhHHHHHHhccccCCC----ccccc------cccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35899999998432100 00000 01112 233467899999999999999999999998776553 111
Q ss_pred Ch---HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 79 TE---QERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQM 155 (309)
Q Consensus 79 ~~---~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~ 155 (309)
.. .+-+.+..+++...+.|...|+.|++....... +. .+....+.+.+++..|..+|++++..|+..
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~-------~~---~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH-------SN---KSSADLRIRKTQYSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 333445578888999999999999987654311 10 112245788899999999999999999999
Q ss_pred HHHHHHH
Q 021645 156 RAIRFQD 162 (309)
Q Consensus 156 q~~R~k~ 162 (309)
|..|.++
T Consensus 146 q~~y~~~ 152 (180)
T 1s94_A 146 QIDYRDR 152 (180)
T ss_dssp HHSCTTC
T ss_pred HHHHHHH
Confidence 9887443
No 14
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.01 Score=42.86 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=56.1
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSR 288 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r 288 (309)
.+.+..+..+|..+..|=.+|..-|..|.++||.|+..++.+...+..++.-+.+..+..+..|
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 4456778888888999999999999999999999999999999999999999999888766543
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.36 E-value=0.12 Score=37.94 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATK 268 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~ 268 (309)
+.+.+++..+.|+..++.+=-..|.+-||.+|.+.+.+++-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4577888888888888888888999999999999888775443
No 16
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=96.36 E-value=0.092 Score=37.45 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 208 QLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 208 q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
|.++++.. ...+...+.++..-+-+.|.-.+=......+..|+|.|++|+.+++++-.++..|.+.|..
T Consensus 8 q~l~~~~~---~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 8 EEMQRRAD---QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 34444443 3334456666777777777777777888899999999999999999999999999987753
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.34 E-value=0.042 Score=37.72 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.+.+..+...|..+..|=..++.-|..|.+++|+|+..++.+...|..++..+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446677888888888889999999999999999999999999999999887765
No 18
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.23 Score=38.84 Aligned_cols=113 Identities=4% Similarity=0.024 Sum_probs=70.5
Q ss_pred CCCCcHHHHHHHHHHHhHHHHHHHHHHhHHHH--hcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc
Q 021645 41 PRERSSFTKAALKTLESIGALEQFILNHRKDY--VEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGW 118 (309)
Q Consensus 41 ~~~~~~F~~~a~~I~~~I~~l~~~l~~lr~~y--l~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~ 118 (309)
+...++|..-+..|..+|-.|...+..+++.- |..++-+.+-|+ .+..+...|+..++.....++.+.....
T Consensus 6 ~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~----kl~~~~~~t~~l~k~ts~~lk~L~~~~~-- 79 (130)
T 2dnx_A 6 SGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQE----NLQQLQHSTNQLAKETNELLKELGSLPL-- 79 (130)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 44567899999999999999999999986532 222322333344 4444444444444454444443332110
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 119 LGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAIN 165 (309)
Q Consensus 119 ~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~ 165 (309)
..+.+..++..-...-|.+-|..+.+.|+.+|....++.+.
T Consensus 80 ------~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 80 ------PLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp ------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123345555667778889999999999999998776543
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.17 E-value=0.25 Score=37.37 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNTSSRTFLLLFLFVL 298 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~~~r~~i~~~~~~~ 298 (309)
.++..-...+..+..-..|++.|..+=+++|..=+..++....+++.+...+..|.+.=+ +.++..+|++++++++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk----~~rkk~~i~l~~~~i~ 96 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS----KARRKKIMIIICCVIL 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcceehHHHHHHH
Confidence 344455666777777788888888888899998899999999999999999999976543 4445568877766655
Q ss_pred HH
Q 021645 299 TF 300 (309)
Q Consensus 299 ~~ 300 (309)
++
T Consensus 97 ~~ 98 (109)
T 3hd7_B 97 GI 98 (109)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.03 E-value=0.076 Score=38.61 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=47.5
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
+.+..+...|..+..|=.+|+.-|..|.++||+|+..++.+...|..++..+.+
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888999999999999999999999999999999888765
No 21
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.88 E-value=0.036 Score=37.97 Aligned_cols=55 Identities=5% Similarity=0.115 Sum_probs=48.0
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.+.+..+..+|..+..|=.+++.-|..|.+++|.|++.++.+...+..++.-+.+
T Consensus 8 D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 8 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888999999999999999999999999999999999877654
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.68 E-value=0.069 Score=38.88 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=48.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.+.+..+...|..+..|=.+|+.-|..|.++||+|+..++.+...|..++..+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667788888888889999999999999999999999999999999988765
No 23
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.68 E-value=0.084 Score=34.74 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 239 SALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELS 278 (309)
Q Consensus 239 ~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ 278 (309)
-.+=..-...+..|||.|++|+.+++++..+++.|.+.|.
T Consensus 13 e~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 13 QDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3333345557889999999999999999999999998774
No 24
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0041 Score=40.14 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.5
Q ss_pred CccCCChHHHHHHHHHHHHhc
Q 021645 2 ARIRDRTEDFKDVARHTAVSL 22 (309)
Q Consensus 2 ~~~~DrT~~F~~~~~~~~~~~ 22 (309)
|+++|||+||++++.++++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 358999999999999999865
No 25
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.2 Score=34.19 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=43.8
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.+..+...+.-+..|=..++.-|..|.++||+|.+.++.+-..|..++.-|.+
T Consensus 11 nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 11 NLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555566666666667999999999999999999999999999999887753
No 26
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.71 E-value=0.41 Score=34.34 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 224 LLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKEL 277 (309)
Q Consensus 224 r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L 277 (309)
..+..++.-+-+.|.-..=..=..++..|||.|++|+.+++....++..|.+.|
T Consensus 25 sl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 25 SLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444445556778999999999999999999988886654
No 27
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=92.99 E-value=1.5 Score=30.26 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 247 THILHQAQQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 247 ~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
.++..|||.|++|+.+++.+..+...|.+.|..-.
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36678999999999999999999999998887543
No 28
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=92.25 E-value=2.2 Score=33.25 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCC
Q 021645 43 ERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRK 122 (309)
Q Consensus 43 ~~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~ 122 (309)
..|+|+....+|...|..++..+..-....-..+.++..+.+....++...+..+...|.-|++.+.--..++..| |
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~-- 101 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-K-- 101 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-C--
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-C--
Confidence 4689999999999999999999887622111112233456667778888888888889999998887332222212 2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 021645 123 GDNSNADTIAHKHGVVLILSEKLHSVTA 150 (309)
Q Consensus 123 ~~~~~~~~~~h~~~Vv~~L~~~L~~~~~ 150 (309)
.+..+..-|...|..+...+.++-.
T Consensus 102 ---l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 102 ---LPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344455666667777666543
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=91.80 E-value=1.1 Score=30.37 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=41.3
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELS 278 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ 278 (309)
.+....+-+.|.-++=.....-+..|.|.|.+....+.++-.++..|..-|.
T Consensus 10 ~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 10 SIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 3444455555666666677778899999999999999999999999987765
No 30
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=76.26 E-value=0.18 Score=38.84 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=26.6
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVE 265 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~ 265 (309)
+.+++..+.|+..++.+=-..|.+-||.+|.+.+.+++
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44555566666666666666778888888888776664
No 31
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=75.69 E-value=20 Score=26.00 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKG 123 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~ 123 (309)
.++|..-..+|...|..|..++.+. .+.++ .....++...+......|.-|.+.+.--...
T Consensus 5 ~DPF~~V~~D~~~ql~~l~~~~~~~------~~~~~----~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--------- 65 (95)
T 2c5k_T 5 EDPFQQVVKDTKEQLNRINNYITRH------NTAGD----DDQEEEIQDILKDVEETIVDLDRSIIVMKRD--------- 65 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT------CCC------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHc------cCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 4899999999999999999997762 11122 2444555566666666666666665421110
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 124 DNSNADTIAHKHGVVLILSEKLHSVTAQF 152 (309)
Q Consensus 124 ~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f 152 (309)
+......|...|.-|...|..+-..|
T Consensus 66 ---~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 ---ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345777888888888887776655
No 32
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=75.29 E-value=19 Score=25.34 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 224 LLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 224 r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
-.+.+....+-+.|--++=..+..-+..|.|.|.+....+.++-.++..+...|..=..+
T Consensus 17 t~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 17 SSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 444555566666666666668888889999999999999999999999999888765544
No 33
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=63.88 E-value=39 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEAT 267 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~ 267 (309)
+.+..+...|.|+..++.+=-..|.+-||.|+.+.+.+++-.
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~ 71 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346667777778888888878889999999999888877643
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=56.07 E-value=19 Score=19.06 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHHHHHHHhHHH
Q 021645 51 ALKTLESIGALEQFILNHRKD 71 (309)
Q Consensus 51 a~~I~~~I~~l~~~l~~lr~~ 71 (309)
|.++.+.+.++...|+++|+.
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888764
No 35
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.59 E-value=57 Score=23.01 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 212 DETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHL 259 (309)
Q Consensus 212 ~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I 259 (309)
+||..|...+....+++..+.....++. .++.+|..=..+|+++
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 4788787777777777777777766666 5666666656666654
No 36
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=47.40 E-value=59 Score=24.39 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021645 220 ELTSLLDAVQQTET----KMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRN 284 (309)
Q Consensus 220 ~~~~r~~~v~~ie~----~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~ 284 (309)
++++|++.+..|.. -+.+.+++|..++++=.-....=..+..++.+-...++.+...|+|-++.-
T Consensus 5 ~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~l 73 (115)
T 4gwp_A 5 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLL 73 (115)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555544 445556777777664433333445566777777777777777777766543
No 37
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=47.12 E-value=58 Score=21.36 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 226 DAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATK 268 (309)
Q Consensus 226 ~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~ 268 (309)
+.+..+...|.|+..++.+=-..|.+-||.|+.+.+.+++-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4577888889999898988888999999999999888776443
No 38
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=46.69 E-value=64 Score=21.71 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 221 LTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQA 280 (309)
Q Consensus 221 ~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka 280 (309)
+..-...|..+..-..|++.|..+=+.+|..=+..|+....+++.+...+..|...-+++
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 67 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666777778899999988899998889999999999999999999998765544
No 39
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=46.68 E-value=71 Score=22.26 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 217 LQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 217 l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
|-+.++...++|..+......+.-..+-+...|..++-. .|.-+...|...++.+..+|.|+...
T Consensus 11 LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 11 LKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 345566667777777777777777677777777677654 46677788888888888888888754
No 40
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=46.32 E-value=67 Score=21.86 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEA 266 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a 266 (309)
.+..+...|.|+..++.+=-..|.+-||.|+.+.+-+++-
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L 48 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3556777777787777777778889999999888877663
No 41
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.89 E-value=87 Score=23.03 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=37.7
Q ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 021645 79 TEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTA 150 (309)
Q Consensus 79 ~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~ 150 (309)
+-.+-.++..+++..=.+.....++|+...+.-...+ +..+.....-|..+|..|..+|.++-.
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DP--------DevNK~tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDP--------DDVNKSTLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666555555555556655554322111 113455677888999999999887543
No 42
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=44.56 E-value=47 Score=25.12 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHHHHHHHHHHHHHHHHHH
Q 021645 46 SFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQI 101 (309)
Q Consensus 46 ~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~id~ei~~~i~~~~~~I 101 (309)
+.-.+.+++..++.++...++.+ +.....++.+...++.-...+|+.....|
T Consensus 6 ~i~~ei~e~~~~i~~l~~~Ik~i----l~~~~st~~~~~~lEsiAAKIIkDisdkI 57 (129)
T 3f6n_A 6 QIQKEVSEILSDQKSMKADIKAI----LELLGSQNPIKESLETVAAKIVNDLTKLI 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 34456667777777777777666 33322344544544444444444444433
No 43
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=43.62 E-value=47 Score=23.09 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=28.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVE 265 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~ 265 (309)
+..+...|.|+..++.+=-..|.+-||.|+.+.+.+++
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555566666666777667888899999998888775
No 44
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=43.49 E-value=66 Score=20.97 Aligned_cols=40 Identities=3% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEA 266 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a 266 (309)
.+..+...|.|+-.++.+=-..|.+-||.|+.+.+.+++-
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L 42 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNL 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4677888888888888888888999999999998887753
No 45
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=37.30 E-value=88 Score=20.65 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEAT 267 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~ 267 (309)
.+.+..+...|.|+..++.+=-..|.+-||.|+.+.+.+++-.
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~ 50 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLE 50 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456777788888888888888889999999999888776643
No 46
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=37.28 E-value=91 Score=20.79 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 223 SLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNK 275 (309)
Q Consensus 223 ~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~ 275 (309)
.-...|..+..-..+++.|..+=+.+|..=+..++.-..+++.+...+.+|.+
T Consensus 14 ~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 14 KLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555677777777777777777777777777788887777777764
No 47
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.87 E-value=1e+02 Score=21.31 Aligned_cols=48 Identities=8% Similarity=-0.074 Sum_probs=34.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGN 274 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~ 274 (309)
.+..+|..+.-.-....+|+..|..|...|+++...+..-...+....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666777777777777888999999999999888877777665443
No 48
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=36.16 E-value=93 Score=20.59 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=34.0
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 227 AVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEA 266 (309)
Q Consensus 227 ~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a 266 (309)
.+..+...+.|+..++.+=-..|.+=||.|+.|++-+++-
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L 44 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAM 44 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999999887773
No 49
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=33.59 E-value=1e+02 Score=20.38 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 223 SLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGN 274 (309)
Q Consensus 223 ~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~ 274 (309)
.-...|..+..-..+++.|..+=+.+|..=+..++.-..+++.+...+.+|.
T Consensus 16 ~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 16 KLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555556777777777777777777777777777777777776653
No 50
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=33.27 E-value=38 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.723 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
+.+.+++|++..+||-.||
T Consensus 17 Ly~GLLlifvlavlFssyf 35 (37)
T 3arc_L 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 4455666777777887664
No 51
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=33.11 E-value=2.1e+02 Score=23.72 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=16.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 228 VQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEAT 267 (309)
Q Consensus 228 v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~ 267 (309)
+..+...+.++..++.+++..+.++.+.++.+...+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~s~~i~~i~ 206 (213)
T 3g67_A 167 LQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSAT 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433333333
No 52
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=32.47 E-value=1.4e+02 Score=21.38 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHhcccCCChHhhHH-------HHHHHHHHHHHH
Q 021645 46 SFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDS-------IEHEVTAFIKTC 97 (309)
Q Consensus 46 ~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~~~~~~~erd~-------id~ei~~~i~~~ 97 (309)
+...+..++..++..+...+..+ |..-+.+..+... |..+++..|+.|
T Consensus 6 ~i~~Ei~~~~~~~~~~~~~i~ai----L~~~gs~~p~~~~lEsiAAKIIkDisdkId~C 60 (95)
T 3k4t_A 6 QIQKEVSEILSDQKSMKADIKAI----LELLGSQNPIKESLETVAAKIVNDLTKLINDC 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 34556666666666666666665 4443344444444 445555555543
No 53
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=31.79 E-value=2.7e+02 Score=24.57 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELG 273 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g 273 (309)
..+..-.+.+..|...+.++...+..++..+.+|...++.|..++.+...-.+..
T Consensus 220 ~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 274 (341)
T 3zx6_A 220 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 274 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788888888888888999989999888888877766655444433
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.61 E-value=2.1e+02 Score=23.33 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=41.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 207 QQLLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVE 265 (309)
Q Consensus 207 ~q~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~ 265 (309)
.+.+..||..|-..+..+..++..+.+.+..+..=-...-..+..|.|.|.-|.+-.+.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~ 80 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEY 80 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHH
Confidence 34567788888888888888888888887777665555555566677777666554443
No 55
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.46 E-value=1e+02 Score=19.65 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 245 MSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRR 283 (309)
Q Consensus 245 l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~ 283 (309)
|+..|.+=...|+.+..++......|..+..+-.+|..|
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555556666666666666666666554
No 56
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=29.29 E-value=1.4e+02 Score=20.34 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 221 LTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 221 ~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
+..-...|..+..-..|++.|..+=+.+|..=+..++.-..+++.+...+..|...-+++.
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~r 72 (77)
T 1jth_B 12 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444566667777788888888888888888889999999999999999999987655544
No 57
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=25.19 E-value=2.9e+02 Score=22.87 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 225 LDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNV 270 (309)
Q Consensus 225 ~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v 270 (309)
.+.+..|...+.++..++..++..+.+|...++.|...+.+...-.
T Consensus 146 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~ 191 (227)
T 1qu7_A 146 GETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVT 191 (227)
T ss_dssp TTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777888888888887777777666544433
No 58
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=24.71 E-value=2.6e+02 Score=22.18 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 230 QTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAI 281 (309)
Q Consensus 230 ~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~ 281 (309)
.++..+.+|+.+...++.+.....+.|++|.........-+...-..|..++
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l 68 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777788887777776666665555555544
No 59
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.01 E-value=1.8e+02 Score=20.12 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 021645 82 ERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRKGDNSNADTIAHKHGVVLILSEKLHSVTA 150 (309)
Q Consensus 82 erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~ 150 (309)
+-.++..+++..=.+.....++|+...+.-...+ ...+.....-|..+|..|..+|.++-.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DP--------DevNK~~~~~R~~~V~~lq~Ki~elkr 66 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDP--------DDVNKSTLQSRRAAVSALETKLGELKR 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555555666666554322111 113455678889999999999987543
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.33 E-value=3.5e+02 Score=22.75 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 219 VELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQ 279 (309)
Q Consensus 219 ~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~k 279 (309)
.....-..++..++..+..+..-+..+...+.+-...+.+++..+..+...+......|..
T Consensus 25 ~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 25 PLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333445667777777777777777777777777788888888888888888888777743
No 61
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.21 E-value=3.2e+02 Score=22.56 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 212 DETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLY 260 (309)
Q Consensus 212 ~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~ 260 (309)
.||..|...+....++|..+..-..++..|.. ++..=.++|+++-
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae----~~q~la~vi~~l~ 159 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAE----HVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 47777777777666777766666666554333 3333334555543
No 62
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=20.95 E-value=2.1e+02 Score=19.68 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 220 ELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKEL 277 (309)
Q Consensus 220 ~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L 277 (309)
.+..-...|..+..-..+++.|..+=+.+|..=+..|+....+++.+...+..|...-
T Consensus 22 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566677777778889999888888998889999999999999999999887643
No 63
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.50 E-value=2.1e+02 Score=21.35 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 021645 221 LTSLLDAVQ 229 (309)
Q Consensus 221 ~~~r~~~v~ 229 (309)
++...++|.
T Consensus 38 vq~evdeVk 46 (119)
T 2kog_A 38 TQAQVDEVV 46 (119)
T ss_dssp SSHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.09 E-value=5.5e+02 Score=24.44 Aligned_cols=72 Identities=4% Similarity=0.048 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021645 214 TRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQAQQIEHLYEQAVEATKNVELGNKELSQAIRRNT 285 (309)
Q Consensus 214 n~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q~e~id~I~~~~~~a~~~v~~g~~~L~ka~~~~~ 285 (309)
+..+...+++--..+..++++=.++.+.+..+..++...-......+....+.+..+++=...|+.-+..+-
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666777778888888887777544444445555555555566666666666665555
No 65
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=20.08 E-value=3.7e+02 Score=22.16 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021645 243 HLMSTHILHQAQQIEHLYEQ 262 (309)
Q Consensus 243 ~~l~~~V~~Q~e~id~I~~~ 262 (309)
..+...+....+.++.|...
T Consensus 168 ~~~~~~~~~~~~~~~~i~~~ 187 (213)
T 3g67_A 168 QNMVRFMENNVKLLQEVRNS 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
Done!