Query 021645
Match_columns 309
No_of_seqs 149 out of 876
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 07:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021645.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021645hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 99.5 6E-14 4.4E-18 117.3 8.3 190 44-252 4-195 (196)
2 d1ez3a_ a.47.2.1 (A:) Syntaxin 98.6 1.5E-06 1.1E-10 66.6 15.1 109 44-162 5-119 (124)
3 d1lvfa_ a.47.2.1 (A:) Syntaxin 93.5 0.82 6E-05 32.5 14.5 98 45-150 2-101 (106)
4 d1qled_ f.23.8.1 (D:) Bacteria 56.3 5.8 0.00042 22.9 3.2 22 288-309 21-42 (43)
5 d1m56d_ f.23.8.1 (D:) Bacteria 51.6 6.7 0.00049 22.4 2.9 21 289-309 21-41 (42)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 50.7 4.4 0.00032 21.2 1.9 12 296-307 9-20 (32)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 43.6 10 0.00073 20.7 2.7 19 290-308 17-35 (37)
8 d3cx5d2 f.23.11.1 (D:261-307) 32.1 20 0.0014 21.0 2.9 20 289-308 8-27 (47)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 30.3 20 0.0015 18.2 2.4 12 293-304 11-22 (30)
10 d1ppjd2 f.23.11.1 (D:196-241) 18.3 51 0.0037 19.0 2.9 16 290-305 9-24 (46)
No 1
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.45 E-value=6e-14 Score=117.31 Aligned_cols=190 Identities=11% Similarity=0.106 Sum_probs=119.8
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc-cCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEM-QRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRK 122 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~-~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~ 122 (309)
..+|+..+.+|...|..+...+..|...+-.. ..++.++.+++...+..+...+....+.++..+......
T Consensus 4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~-------- 75 (196)
T d1fioa_ 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD-------- 75 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence 35899999999999999999999997655433 234555666666666666666666666666555433221
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCccccccCCCCc
Q 021645 123 GDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADISTPNKSDIRELDEIQPEP 202 (309)
Q Consensus 123 ~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (309)
.....++.+++..|..+|.+++..|+.++..|.+..+.+..++.++.. +...+.+ ......+...... .
T Consensus 76 -----~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~----~ 144 (196)
T d1fioa_ 76 -----GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQ-PEATEDE-VEAAISDVGGQQI----F 144 (196)
T ss_dssp -----TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCCHHH-HHHHTSHHHHHHH----H
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCccchh-hhHhhccccchHH----H
Confidence 112367788899999999999999999999998887665432111111 1000000 0000000000000 0
Q ss_pred chHHHH-HHHHHhHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 021645 203 LTVQQQ-LLDDETRALQVELTSLLDAVQQTETKMVEVSALNHLMSTHILHQ 252 (309)
Q Consensus 203 ~~~q~q-~~~~en~~l~~~~~~r~~~v~~ie~~i~ei~~l~~~l~~~V~~Q 252 (309)
.+.+.. ....+....+.++++|+++|.+||++|.||++||.+|++||.+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ 195 (196)
T d1fioa_ 145 SQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195 (196)
T ss_dssp HHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 000000 01112233568899999999999999999999999999999988
No 2
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.55 E-value=1.5e-06 Score=66.59 Aligned_cols=109 Identities=10% Similarity=0.202 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc---cCCChHhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 021645 44 RSSFTKAALKTLESIGALEQFILNHRKDYVEM---QRTTEQERDSIE---HEVTAFIKTCKEQIDILQNSINDDEANSKG 117 (309)
Q Consensus 44 ~~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~---~~~~~~erd~id---~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~ 117 (309)
++.|+.++..|...|..|...+.+|+..|-.. +.+....+++++ .++....+.|...|+.|++..+......
T Consensus 5 m~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~-- 82 (124)
T d1ez3a_ 5 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN-- 82 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--
Confidence 57899999999999999999999998776443 334444455555 5666666677778888877665432111
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021645 118 WLGRKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQD 162 (309)
Q Consensus 118 ~~g~~~~~~~~~~~~h~~~Vv~~L~~~L~~~~~~f~~~q~~R~k~ 162 (309)
.+....+.+.+.+..|..+|++++..|+.+|..|-+.
T Consensus 83 --------~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~ 119 (124)
T d1ez3a_ 83 --------RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER 119 (124)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234578889999999999999999999999987444
No 3
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=93.54 E-value=0.82 Score=32.48 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhHHHHhcc--cCCChHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCCC
Q 021645 45 SSFTKAALKTLESIGALEQFILNHRKDYVEM--QRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGRK 122 (309)
Q Consensus 45 ~~F~~~a~~I~~~I~~l~~~l~~lr~~yl~~--~~~~~~erd~id~ei~~~i~~~~~~I~~L~~~~~~~~~~~~~~~g~~ 122 (309)
|+|+..+.+|...|..++...... .++.. +.++..+.+.+..++...++.+...|.-|++.+.--..++.+| |
T Consensus 2 DPF~~v~~EVq~s~~~~~~l~~~w--~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf-~-- 76 (106)
T d1lvfa_ 2 DPFFVVKGEVQKAVNTAQGLFQRW--TELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKF-N-- 76 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGG-T--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhc-C--
Confidence 689999999999999999999887 33433 3445567777788999999988899999999887433222222 2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 021645 123 GDNSNADTIAHKHGVVLILSEKLHSVTA 150 (309)
Q Consensus 123 ~~~~~~~~~~h~~~Vv~~L~~~L~~~~~ 150 (309)
.+......|...+......+.++-.
T Consensus 77 ---l~~~ei~~Rr~fi~~~~~~I~~~~~ 101 (106)
T d1lvfa_ 77 ---LDATELSIRKAFITSTRQIVRDMKD 101 (106)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444555667766666544
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=56.28 E-value=5.8 Score=22.88 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC
Q 021645 288 RTFLLLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 288 r~~i~~~~~~~~~~llfl~~~~ 309 (309)
=+|..++.+++.++|+|+--+|
T Consensus 21 i~~~t~~~i~~i~~liflAi~n 42 (43)
T d1qled_ 21 IKGATWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666667777776554
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=51.57 E-value=6.7 Score=22.44 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcC
Q 021645 289 TFLLLFLFVLTFSILFLDWYS 309 (309)
Q Consensus 289 ~~i~~~~~~~~~~llfl~~~~ 309 (309)
+|..++.+++..+|+|+--+|
T Consensus 21 k~~t~~~i~~i~~liflAi~n 41 (42)
T d1m56d_ 21 RMVTWAAVVIVAALIFLALAN 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666665443
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=50.73 E-value=4.4 Score=21.18 Aligned_cols=12 Identities=33% Similarity=1.140 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhh
Q 021645 296 FVLTFSILFLDW 307 (309)
Q Consensus 296 ~~~~~~llfl~~ 307 (309)
.+++|.|+|+.|
T Consensus 9 a~lsfglifvgw 20 (32)
T d2e74f1 9 ALLSFGLIFVGW 20 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHh
Confidence 356777888777
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=43.63 E-value=10 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.723 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021645 290 FLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl~~~ 308 (309)
+.+.+++|++..+||-.||
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455666677777887765
No 8
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.13 E-value=20 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 021645 289 TFLLLFLFVLTFSILFLDWY 308 (309)
Q Consensus 289 ~~i~~~~~~~~~~llfl~~~ 308 (309)
+|-+..++++++++++.-|+
T Consensus 8 ~mg~K~~~i~s~l~~~~~y~ 27 (47)
T d3cx5d2 8 RLGLKTVIILSSLYLLSIWV 27 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776664
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.31 E-value=20 Score=18.16 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021645 293 LFLFVLTFSILF 304 (309)
Q Consensus 293 ~~~~~~~~~llf 304 (309)
.+++.+.|+-+|
T Consensus 11 ac~i~lfffaif 22 (30)
T d2axtt1 11 ACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.30 E-value=51 Score=18.98 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 021645 290 FLLLFLFVLTFSILFL 305 (309)
Q Consensus 290 ~i~~~~~~~~~~llfl 305 (309)
+-+.++++++++.+++
T Consensus 9 mG~Kv~~~l~~l~~l~ 24 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLV 24 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
Done!