BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021646
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 344 bits (883), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/291 (57%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
I G + G DQP+IL +LDI P L+GV MEL D A PLLK V+AT A KD+++
Sbjct: 24 IGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 83
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PR++GMERKD++ NV I+K Q +AL+K+A + KV+VV NPANTN L +
Sbjct: 84 AILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKS 143
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
APSIP +N +CLTRLDHNRA QI+ +L V DVKNVIIWGNHSSTQYPDVNHA V
Sbjct: 144 APSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQ 203
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
E V EAV DD+WL EFITTVQQRGAA+IKARK CDH+RD GTP+
Sbjct: 204 AKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPE 263
Query: 242 GTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL +++FSR KMD
Sbjct: 264 GEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMD 314
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 344 bits (883), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/291 (57%), Positives = 207/291 (71%), Gaps = 1/291 (0%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
I G + G DQP+IL +LDI P L+GV MEL D A PLLK V+AT A KD+++
Sbjct: 23 IGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PR++GMERKD++ NV I+K Q +AL+K+A + KV+VV NPANTN L +
Sbjct: 83 AILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKS 142
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
APSIP +N +CLTRLDHNRA QI+ +L V DVKNVIIWGNHSSTQYPDVNHA V
Sbjct: 143 APSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQ 202
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
E V EAV DD+WL EFITTVQQRGAA+IKARK CDH+RD GTP+
Sbjct: 203 AKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPE 262
Query: 242 GTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL +++FSR KMD
Sbjct: 263 GEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMD 313
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/290 (51%), Positives = 192/290 (66%), Gaps = 5/290 (1%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
IA G +LG DQPVIL +LD+ A A+ GV MEL D AFPLL GVV T D A KD ++
Sbjct: 29 IANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADV 88
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PR +GMERKD++S N I+ Q +AL + A+ + KVLVV NPANTNA I +
Sbjct: 89 ALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKS 148
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP +P KN T + RLDHNRA+ Q++ + V+ ++ + +WGNHS T YPD A T+
Sbjct: 149 APDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TA 205
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
+GE ++ + DD W FI TV +RGAAII+AR DH+RDWVLGT
Sbjct: 206 EGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-N 263
Query: 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G WV+MG+ SDGSYGIPE +IY PV CE GE+ V+GL++D FSR KMD
Sbjct: 264 GKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMD 313
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 291 bits (744), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/290 (50%), Positives = 190/290 (65%), Gaps = 5/290 (1%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
IA G MLG DQPVIL +L+I A +AL GV MEL D AFPLL G+ AT D A KD +
Sbjct: 24 IAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PRK GMER+D++ N I+ Q AL + A + KVLVV NPANTNALI +
Sbjct: 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKN 143
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP + +N T +TRLDHNRA Q++++ V ++ + +WGNHSST +PD+ HA V
Sbjct: 144 APGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG- 202
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
+P E V D W FI TV QRGAAII+AR +HIRDW LGTP+
Sbjct: 203 ---RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPE 258
Query: 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G WVSM V S G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+
Sbjct: 259 GDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRME 308
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 290 bits (742), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/290 (50%), Positives = 190/290 (65%), Gaps = 5/290 (1%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
IA G MLG DQPVIL +L+I A +AL GV MEL D AFPLL G+ AT D A KD +
Sbjct: 24 IAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPDVAFKDADY 83
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PRK GMER+D++ N I+ Q AL + A + KVLVV NPANTNALI +
Sbjct: 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKN 143
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP + +N T +TRLDHNRA Q++++ V ++ + +WGNHSST +PD+ HA V
Sbjct: 144 APGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG- 202
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
+P E V D W FI TV QRGAAII+AR +HIRDW LGTP+
Sbjct: 203 ---RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPE 258
Query: 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G WVSM V S G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+
Sbjct: 259 GDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRME 308
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 189/290 (65%), Gaps = 5/290 (1%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
IA G MLG DQPVIL +L E + +AL GV MEL D AFPLL G+ AT D A KD +
Sbjct: 24 IAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PRK GMER+D++ N I+ Q AL + A + KVLVV NPANTNALI +
Sbjct: 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKN 143
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP + +N T +TRLDHNRA Q++++ V ++ + +WGNHSST +PD+ HA V
Sbjct: 144 APGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG- 202
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
+P E V D W FI TV QRGAAII+AR +HIRDW LGTP+
Sbjct: 203 ---RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPE 258
Query: 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G WVSM V S G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+
Sbjct: 259 GDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRME 308
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 287 bits (735), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 189/290 (65%), Gaps = 5/290 (1%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
IA G MLG DQPVIL +L+I A +AL GV MEL D AFPLL G+ AT D A KD +
Sbjct: 24 IAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPDVAFKDADY 83
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A++VG PRK GMER+D++ N I+ Q AL + A + KVLVV NPANTNALI +
Sbjct: 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKN 143
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP + +N T +TRLDHNRA Q++++ V ++ + +WGNHSS +PD+ HA V
Sbjct: 144 APGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSIMFPDLFHAEVDG- 202
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
+P E V D W FI TV QRGAAII+AR +HIRDW LGTP+
Sbjct: 203 ---RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPE 258
Query: 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G WVSM V S G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+
Sbjct: 259 GDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRME 308
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 190/292 (65%), Gaps = 7/292 (2%)
Query: 2 IARGIMLGPDQPVILHMLDI--EPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 59
IA G MLG DQPVIL +L+I E A +AL GV ME+ D AFPLL G+ A D + A KD
Sbjct: 25 IANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++A++VG PR GMERKD++ N I+ Q A++ A+ N KVLVV NPANTNA I
Sbjct: 85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM 144
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVT 179
+ APS+PAKN T + RLDHNRA+ QI+ + VS ++ + +WGNHS T Y D +A +
Sbjct: 145 KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQID 204
Query: 180 TSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGT 239
+ V++ + DD W F+ TV +RGAAII AR DHI DWVLGT
Sbjct: 205 GAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGT 260
Query: 240 PKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
G W +MG+ SDGSYGIPEG+I+ FPVT E GE+ IV+GL +D FS+ +++
Sbjct: 261 -AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERIN 311
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 286 bits (733), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 146/281 (51%), Positives = 186/281 (66%), Gaps = 7/281 (2%)
Query: 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
+IARG +LGP PV L +LDIEPA +AL GV+ EL D AFPLL VV T D A V
Sbjct: 43 LIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVA 102
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI-LK 119
IA+M G FPRK GMERKD++ N I+K Q A+ AA +C+V+VV NPANTNALI LK
Sbjct: 103 IAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLK 162
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVT 179
+ +++T +TRLDHNRA+ ++ + V VS V+NVIIWGNHSSTQ PD + A +
Sbjct: 163 SAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIG 222
Query: 180 TSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGT 239
T+ P REA+ DD L+ +F+ V+ RGA II+ R DH+ DW+ GT
Sbjct: 223 TT----PAREAIKDDA-LDDDFVQVVRGRGAEIIQLRGLSSAMSAAKAAVDHVHDWIHGT 277
Query: 240 PKGTWVSMGVYSD-GSYGIPEGLIYSFPVTCEKGEWSIVKG 279
P+G +VSMGVYSD YG+P GLI+SFP TC GEW++V G
Sbjct: 278 PEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSG 318
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 163/291 (56%), Gaps = 6/291 (2%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
+A G + GPDQP+ L +L E + AL GV MEL D+ +PLL+ V D E +D
Sbjct: 62 LASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEW 121
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A+++G PR GMER D++ N I+ Q AL A+PN KV+VV NP NTNALI +
Sbjct: 122 ALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKN 181
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP+IP KN LTRLD NRA Q++ + V V NV IWGNHS+TQ PD +A +
Sbjct: 182 APNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGI 241
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
PV E + D WL EF VQ RG +IK D IR V TP+
Sbjct: 242 ----PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPE 297
Query: 242 GTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 290
G W S GVY++G+ YGI E +++S P + G++ VK + D++ K+
Sbjct: 298 GDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKI 348
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 163/286 (56%), Gaps = 6/286 (2%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 61
+A G + G DQP+ L +L E + +AL GV MEL D+ +PLL+ V D E +DV+
Sbjct: 52 LASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111
Query: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121
A+++G PR GMER ++ N I+ Q AL A+ N KVLVV NP NTNALI +
Sbjct: 112 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKN 171
Query: 122 APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
AP IPAKN LTRLD NRA Q++ + V V NV IWGNHS+TQ PD +A +
Sbjct: 172 APDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDG- 230
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPK 241
+PV+E + WL EF TVQ+RG A+I+ D I+ V TP+
Sbjct: 231 ---RPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPE 287
Query: 242 GTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEF 285
G W S GVY+ G+ YGI E +++S P + G++ + + D+F
Sbjct: 288 GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDF 333
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 17/235 (7%)
Query: 22 EPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81
+P A L GV E+ F L + T+D+ EA D V GG PRKEGM R+D++
Sbjct: 41 DPFAVGLEGVAEEIRHCGFEGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLK 99
Query: 82 KNVSIYKAQASALEKHAAPNCK-VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 140
N I AQ K P+CK V+++ NPA+ L+ ++ P++ +T L LD R
Sbjct: 100 GNAEI-AAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTR 157
Query: 141 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 200
++++ + S V N +G H + A V + P+ + + D N +
Sbjct: 158 LQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGT----PLTDLIGTDKLTNEQ 213
Query: 201 FITTVQQR----GAAIIKARKXXXXXXXXXXXCDHIRDWVLGT----PKGTWVSM 247
+ ++QR GA IIK R + IR + G P G +V++
Sbjct: 214 W-AELKQRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNV 267
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 114
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 72 AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAM 130
Query: 115 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
L++F+ +PA + + LD R +SE V V DV V + G H + P
Sbjct: 131 VWALQKFS-GLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDV-TVFVLGGHGDSMVPLA 188
Query: 174 NHATVT 179
++TV
Sbjct: 189 RYSTVA 194
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 13/235 (5%)
Query: 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 116
+D ++ ++ G PR GM R D+++KN I +P+ ++VVANP +
Sbjct: 68 EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVANPLDVMTY 126
Query: 117 ILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
+ E A P + + LD R I+E L V V DV+ ++ G H T P +
Sbjct: 127 VAYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQ-ALLMGGHGDTMVPLPRY 184
Query: 176 ATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDW 235
TV G PV + + D+ E + + G I+ + + +
Sbjct: 185 TTV----GGIPVPQLI--DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAE-MTEA 237
Query: 236 VLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 290
+L K + Y DG YG+ + L PV G V + +D +A++
Sbjct: 238 ILKDNK-RILPCAAYCDGEYGLDD-LFIGVPVKLGAGGVEEVIEVDLDADEKAQL 290
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 58 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117
D +I ++ G PRK GM R+D++ KN I K + KH+ N ++VV+NP + I
Sbjct: 69 DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----I 123
Query: 118 LKEFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+ A +P + + + LD R I+ L V + D+ N + G H P V
Sbjct: 124 MTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVV 182
Query: 174 NHATV 178
+ TV
Sbjct: 183 KYTTV 187
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 3/207 (1%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++ ++ G PRK G R D++ N+ + + + KH PN V+ + NP + L+
Sbjct: 75 DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGI-KHNCPNAFVICITNPLDIXVNXLQ 133
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVT 179
+F+ K + LD R +++ L V V V+ + G H T P + V
Sbjct: 134 KFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHGDTXVPLTKXSNVA 192
Query: 180 TSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGT 239
E+ V+E L+ ++ + G I+ K + L
Sbjct: 193 GVSLEQLVKEGKLKQERLDA-IVSRTRSGGGEIVALLKTGSAYYAPAAAGIQXAESFLKD 251
Query: 240 PKGTWVSMGVYSDGSYGIPEGLIYSFP 266
K G YG+ E L P
Sbjct: 252 KKXILPCAAKVKAGXYGLDEDLFVGVP 278
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 20/230 (8%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
+I V+ G PRK GM R+D++S N I + + +H + N ++VV+NP + I+
Sbjct: 71 DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEH-SKNPIIVVVSNPLD----IMT 125
Query: 120 EFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
A +P + + + LD R I+ L V + DV ++ G H P V +
Sbjct: 126 HVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL-GGHGDAMVPVVKY 184
Query: 176 ATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK-ARKXXXXXXXXXXXCDHIRD 234
TV PV + ++ + E + + GA I+ ++ + +
Sbjct: 185 TTVAGI----PVADLISAERI--AELVERTRTGGAEIVNHLKQGSAFYSPATSVVEMVES 238
Query: 235 WVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDE 284
VL + ++ V DG YGI +G PV K + +K+D+
Sbjct: 239 IVLDRKR--VLTCAVSLDGQYGI-DGTFVGVPVKLGKNGVEHIYEIKLDQ 285
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
+I ++ G PRK GM R+D++ KN I K + KH+ N ++VV+NP + I+
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 120 EFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
A +P + + + LD R I+ L V + D+ N + G H P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 176 ATV 178
TV
Sbjct: 185 TTV 187
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 17/238 (7%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115
CKD ++ V+ G P+K G R D+++KN++I + + LV ANP +
Sbjct: 70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGI-FLVAANPVDILT 128
Query: 116 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
+F+ + I T LD +R + ++ V V + I G H +++ +
Sbjct: 129 YATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYST 187
Query: 176 ATVTTSKGEKPVR-----EAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCD 230
AT+ G +PVR + V+DD+ E V+ + II +
Sbjct: 188 ATI----GTRPVRDVAKEQGVSDDDLAKLE--DGVRNKAYDIINLKGATFYGIGTALM-- 239
Query: 231 HIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG-LKVDEFSR 287
I +L + + +G Y DG YG+ + I + + G I++ L DE +
Sbjct: 240 RISKAIL-RDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKK 296
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+ + NP +
Sbjct: 78 EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVICITNPLDA 136
Query: 114 NALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172
KE IPA + ++ LD R +S L V SDV +++ G H P
Sbjct: 137 MVYYFKE-KSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVV-GGHGDEMIPL 194
Query: 173 VNHATV 178
+ T+
Sbjct: 195 TSSVTI 200
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 43 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 102
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P+
Sbjct: 53 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDA 111
Query: 103 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 158
+ +++NP N+ A + K+ P K I +T LD RA ++E + + V
Sbjct: 112 MICIISNPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANAFVAELKGLDPARVSV 170
Query: 159 VIIWGNHSSTQYPDVNHAT 177
+I G+ T P ++ T
Sbjct: 171 PVIGGHAGKTIIPLISQCT 189
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 43 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 102
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P
Sbjct: 81 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPEA 139
Query: 103 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 158
+ V+ANP N+ A + K+ P K I +T LD RA ++E + + V
Sbjct: 140 MICVIANPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANTFVAELKGLDPARVNV 198
Query: 159 VIIWGNHSSTQYPDVNHAT 177
+I G+ T P ++ T
Sbjct: 199 PVIGGHAGKTIIPLISQCT 217
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 16 LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGME 75
L M+D+ + L G M+L + L +V D + + V+ G ++EG
Sbjct: 48 LAMVDV--MEDKLKGEVMDLQHGSLFLKTKIVGDKDY-SVTANSKVVVVTAGARQQEGES 104
Query: 76 RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 135
R +++ +NV+I+K + K+ +PNC ++VV+NP + + + + + I T
Sbjct: 105 RLNLVQRNVNIFKFIIPNIVKY-SPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTN 163
Query: 136 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP---DVNHATVTTSKGEKPVREAVA 192
LD R I E+L +H S I+ G H + P VN A V+ +G P
Sbjct: 164 LDSARFRHLIGEKLHLHPSSCHAWIV-GEHGDSSVPVWSGVNVAGVSL-QGLNPQMGTEG 221
Query: 193 D-DNW 196
D +NW
Sbjct: 222 DGENW 226
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
++ T+D + D ++ V+ G RK GM R D+++ N I K+ + KH +PN ++
Sbjct: 67 IIGTSDYADTA-DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIV 124
Query: 106 VVANPANTNAL-ILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWG 163
V+ NP + + KE P + + + LD R I++ L + V D+ ++ G
Sbjct: 125 VLTNPVDAMTYSVFKE--AGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL-G 181
Query: 164 NHSSTQYPDVNHA 176
H P V ++
Sbjct: 182 GHGDDMVPLVRYS 194
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 116
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 117 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 176
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 177 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 236
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 237 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 116
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 117 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 176
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 177 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 236
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 237 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 116
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 117 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 176
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 177 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 236
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 237 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115
KD ++ V+ G RK G R D+ KNV I K + K+ +LVV+NP +
Sbjct: 72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGV-ILVVSNPVDIIT 130
Query: 116 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
++++++ K I T LD R +SE+L V V +V II G H +Q P
Sbjct: 131 YMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYII-GEHGDSQLP 185
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC--KVLVVANPANT---N 114
++ ++ G PRKEGM R D+ N I A K A C K+ V+ NP +
Sbjct: 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYA----KKIAEICDTKIFVITNPVDVMTYK 131
Query: 115 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 174
AL+ +F + + T LD R I++ VH+ +V+ II G H + P ++
Sbjct: 132 ALVDSKFERN---QVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRII-GEHGDSMVPLLS 187
Query: 175 HATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR 216
TS G P+++ E I V+ +G II+ +
Sbjct: 188 ----ATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK 225
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLV 110
Query: 81 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 140
+NV+I+K + K+ +PNC +LVV+NP + + + + + I T LD R
Sbjct: 111 QRNVNIFKFIIPNIIKY-SPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSAR 169
Query: 141 AMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
+ E+L +H S+ +I G H + P
Sbjct: 170 FRHLMGEKLGIHPSNCHGWVI-GEHGDSSVP 199
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 116
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 117 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 176
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 177 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 236
++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 CISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 237 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 291
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 26 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 85
+ L G M+L + L + + + + V+ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 115
Query: 86 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 145
I+K + K++ PNCK+LVV+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNIVKYS-PNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 146 SERLKVHVSDVKNVIIWGNHSSTQYP 171
ERL VH I+ G H + P
Sbjct: 175 GERLGVHPLSCHGWIL-GEHGDSSVP 199
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 10/239 (4%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
E CKD +I + G +K G R +++ KN+ I+K S + + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMA-SGFDGIFLVATNPVDI 127
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+F+ + I T LD R +SE +V II G H T+ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHII-GEHGDTELPVW 186
Query: 174 NHATVTTSKGEKPVREAVADDNWLNTEFITTV--QQRGAAIIKARKXXXXXXXXXXXCDH 231
+HA V G PV E V ++ E + + + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 232 IRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 290
I +L + + +++ Y DG YG + I P +G + + L ++E + +
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 10/268 (3%)
Query: 26 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 85
+ L G M+L + L + + I V+ G ++EG R +++ +NV+
Sbjct: 57 DKLKGEMMDLQHGSLFLQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN 116
Query: 86 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 145
++K + K+ +PNC ++VV+NP + + + + + I LD R +
Sbjct: 117 VFKFIIPQIVKY-SPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLM 175
Query: 146 SERLKVHVSDVKNVII--WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFIT 203
E+L VH S I+ G+ S + VN A V + + +NW E
Sbjct: 176 GEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENW--KEVHK 233
Query: 204 TVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIY 263
V + +IK K D I + + VS V G YGI +
Sbjct: 234 MVVESAYEVIKL-KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMV--QGMYGIENEVFL 290
Query: 264 SFP-VTCEKGEWSIV-KGLKVDEFSRAK 289
S P V +G S++ + LK DE ++ K
Sbjct: 291 SLPCVLNARGLTSVINQKLKDDEVAQLK 318
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80
++ + L G M+L + L + + + + ++ G ++EG R +++
Sbjct: 50 VDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLV 109
Query: 81 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 140
+NV+I+K + K++ P+CK+LVV+NP + + + + + I LD R
Sbjct: 110 QRNVNIFKFIIPNVVKYS-PHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSAR 168
Query: 141 AMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
+ ERL VH I+ G H + P
Sbjct: 169 FRYLMGERLGVHALSCHGWIL-GEHGDSSVP 198
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 26 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 85
+ L G M+L + L + + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 86 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 145
I+K + K++ PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKYS-PNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 146 SERLKVHVSDVKNVIIWGNHSSTQYP 171
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 26 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 85
+ L G M+L + L + + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 86 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 145
I+K + K++ PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKYS-PNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 146 SERLKVHVSDVKNVIIWGNHSSTQYP 171
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 10/239 (4%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
E CKD +I + G +K G R +++ KN+ I+K S + + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMA-SGFDGIFLVATNPVDI 127
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+F+ + I T LD R +SE +V II G H T+ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVW 186
Query: 174 NHATVTTSKGEKPVREAVADDNWLNTEFITTV--QQRGAAIIKARKXXXXXXXXXXXCDH 231
+HA V G PV E V ++ E + + + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 232 IRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 290
I +L + + +++ Y DG YG + I P +G + + L ++E + +
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115
KD ++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVDILT 132
Query: 116 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
+ + + + T LD R I+E + V V + I G H T++P +H
Sbjct: 133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSH 191
Query: 176 ATV 178
A +
Sbjct: 192 ANI 194
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115
KD ++ V+ G P++ G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 73 AKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPI-VDSGFNLIFLVAANPVDILT 131
Query: 116 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
+ + + + T LD R I+E + V V + I G H T++P +H
Sbjct: 132 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSH 190
Query: 176 ATV 178
A +
Sbjct: 191 ANI 193
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 52 VDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 111
Query: 81 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 140
+NV+I+K + KH +P+C +LVV+NP + + + + + I LD R
Sbjct: 112 QRNVNIFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSAR 170
Query: 141 AMGQISERLKVHVSDVKNVIIWGNHSST 168
+ ERL VH +I G H +
Sbjct: 171 FRYLMGERLGVHSCSCHGWVI-GEHGDS 197
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 110
Query: 81 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 140
+NV+I+K + KH +P+C +LVV+NP + + + + + I LD R
Sbjct: 111 QRNVNIFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSAR 169
Query: 141 AMGQISERLKVHVSDVKNVIIWGNHSST 168
+ ERL VH +I G H +
Sbjct: 170 FRYLMGERLGVHSCSCHGWVI-GEHGDS 196
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 26 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 85
+ L G M+L + L + ++ + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 86 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 145
I+K + K+ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 146 SERLKVHVSDVKNVIIWGNHSSTQYP 171
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 26 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 85
+ L G M+L + L + ++ + + ++ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 115
Query: 86 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 145
I+K + K+ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 146 SERLKVHVSDVKNVIIWGNHSSTQYP 171
ERL VH ++ G H + P
Sbjct: 175 GERLGVHPLSCHGWVL-GEHGDSSVP 199
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 10/233 (4%)
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
I V+ G ++EG R +++ +NV+++K + K+ +P+C ++VV+NP + + +
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVDILTYVTWK 149
Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII--WGNHSSTQYPDVNHATV 178
+ + I LD R ++E+L +H S I+ G+ S + VN A V
Sbjct: 150 LSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV 209
Query: 179 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLG 238
+ + + +NW E V + +IK K D I +
Sbjct: 210 SLQELNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTNWAIGLSVADLIESMLKN 266
Query: 239 TPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KGLKVDEFSRAK 289
+ VS V G YGI + S P + +G S++ + LK DE ++ K
Sbjct: 267 LSRIHPVSTMV--KGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLK 317
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 10/233 (4%)
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
I V+ G ++EG R +++ +NV+++K + K+ +P+C ++VV+NP + + +
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVDILTYVTWK 149
Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII--WGNHSSTQYPDVNHATV 178
+ + I LD R ++E+L +H S I+ G+ S + VN A V
Sbjct: 150 LSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGV 209
Query: 179 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLG 238
+ + + +NW E V + +IK K D I +
Sbjct: 210 SLQELNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTNWAIGLSVADLIESMLKN 266
Query: 239 TPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KGLKVDEFSRAK 289
+ VS V G YGI + S P + +G S++ + LK DE ++ K
Sbjct: 267 LSRIHPVSTMV--KGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLK 317
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115
KD ++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVDILT 132
Query: 116 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 175
+ + + + T LD R I++ + V V + I G H T++P +H
Sbjct: 133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSV-HAYIMGEHGDTEFPVWSH 191
Query: 176 ATV 178
A +
Sbjct: 192 ANI 194
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANTN 114
C D ++ V+ G +K G R D++SKN+ I+K+ E A+ + +VA NP +
Sbjct: 72 CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVG--EVMASKFDGIFLVATNPVDIL 129
Query: 115 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 174
A +F+ + I T LD R +SE V V II G H T+ P +
Sbjct: 130 AYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWS 188
Query: 175 HATV 178
HA +
Sbjct: 189 HANI 192
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANTN 114
C D ++ V+ G +K G R D++SKN+ I+K+ E A+ + +VA NP +
Sbjct: 72 CHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVG--EVMASKFDGIFLVATNPVDIL 129
Query: 115 ALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVN 174
A +F+ + I T LD R +SE V V II G H T+ P +
Sbjct: 130 AYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWS 188
Query: 175 HATV 178
HA +
Sbjct: 189 HANI 192
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK--VLVVANPANT 113
C+D ++ V+ G +K G R D++ KN++I++ S +E A + LV NP +
Sbjct: 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFR---SIVESVMASGFQGLFLVATNPVDI 128
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+F+ + I T LD R + E V +V II G H T+ P
Sbjct: 129 LTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTELPVW 187
Query: 174 NHATVTTSKGEKPVREAV 191
+ A + G P+R+ V
Sbjct: 188 SQAYI----GVMPIRKLV 201
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 57 KDVNIA------VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110
KD N++ ++ G G R D++ +NV+I KA + +++ P+CK++VV NP
Sbjct: 80 KDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNP 138
Query: 111 ANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQY 170
+ ++ + + + I LD R I E+L V+ + ++ G H +
Sbjct: 139 VDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL-GEHGDSSV 197
Query: 171 P---DVNHATVT 179
P VN A VT
Sbjct: 198 PIWSGVNVAGVT 209
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK--VLVVANPANT 113
C+D ++ V+ G +K G R D++ KN++I++ S +E A + LV NP +
Sbjct: 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFR---SIVESVMASGFQGLFLVATNPVDI 128
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+F+ + I T LD R + E V +V II G H T+ P
Sbjct: 129 LTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTELPVW 187
Query: 174 NHATVTTSKGEKPVREAV 191
+ A + G P+R+ V
Sbjct: 188 SQAYI----GVMPIRKLV 201
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 131
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 132 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115
K I V+ G RK GM R D+ KN I K A + ++A P K+LVV NP +
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMT 125
Query: 116 LIL-KEFAPSIPAKNITCL-TRLDHNRAMGQISERL-KVHVSDVKNVIIWGNHSSTQY 170
I+ KE P + + +LD R + ERL +++ I G H + +
Sbjct: 126 YIMWKESGK--PRNEVFGMGNQLDSQR----LKERLYNAGARNIRRAWIIGEHGDSMF 177
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 131
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 132 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 60 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 119
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 120 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 116
K ++ ++ G P+K G R ++ +N + K A + K+ AP+ V+VV NP +
Sbjct: 66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTY 124
Query: 117 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171
+ + P K T LD R I++ V +V + G H ++ P
Sbjct: 125 FFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSV-HVYVIGEHGDSEVP 178
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 58 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117
D + ++ G +K G R D++ KN I++ + + AAP+ +LV +NP + +
Sbjct: 67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITR-AAPDAVLLVTSNPVDLLTDL 125
Query: 118 LKEFAPSIPAKNITCLTRLDHNR 140
+ AP P I T LD R
Sbjct: 126 ATQLAPGQPV--IGSGTVLDSAR 146
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 48 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVV 107
A D A + ++ ++ G RK G +R D+ + N I K+ A + PN + ++
Sbjct: 62 AGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERI-AVVCPNACIGII 120
Query: 108 ANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGN 164
NP NT I E A + + +T LD R+ ++E +V+ +I G+
Sbjct: 121 TNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGH 180
Query: 165 HSSTQYP 171
T P
Sbjct: 181 SGVTILP 187
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 51 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110
D A + ++ ++ G RK GM+R D+ + N I K + K C + ++ NP
Sbjct: 62 DATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC-IGIITNP 120
Query: 111 ANTNALILKEF--APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS 167
NT I E + KN + +T LD R+ ++E +V+ +I G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 168 TQYP 171
T P
Sbjct: 181 TILP 184
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 63 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 122
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVXTQVAYRLS 130
Query: 123 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 169
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 51 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110
D A + ++ ++ G RK GM+R D+ + N I K + K C + ++ NP
Sbjct: 62 DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC-IGIITNP 120
Query: 111 ANTNALILKEF--APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS 167
NT I E + KN + +T LD R+ ++E +V+ +I G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 168 TQYP 171
T P
Sbjct: 181 TILP 184
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 63 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 122
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLS 130
Query: 123 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 169
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 63 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 122
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLS 130
Query: 123 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 169
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 63 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 122
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALS 130
Query: 123 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 169
P + + T LD R ++E L+V V ++ G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 47 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 101
V+ ++ + KD ++ ++ GF + G R D++ N I + K+ PN
Sbjct: 61 VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNNCPN 119
Query: 102 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 160
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEF 201
I G H + + TV G P++E + + + E
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDQEL 214
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 51 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110
D A + ++ ++ G RK GM+R D+ + N I K + K C + ++ NP
Sbjct: 62 DATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC-IGIITNP 120
Query: 111 ANTNALILKE 120
NT I E
Sbjct: 121 VNTTVAIAAE 130
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 47 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 101
V ++ + K ++ ++ GF + G R D++ N I + K+ PN
Sbjct: 60 VTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNLCPN 118
Query: 102 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 160
++VV NP + +L E + +P I L LD +R IS++L V DV N +
Sbjct: 119 AFIIVVTNPVDVMVQLLFEHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAL 176
Query: 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTE 200
I G H + + TV G P++E + + + E
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDEE 212
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 47 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 101
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 102 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 160
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 206
I G H + + TV ++ + + D L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 47 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 101
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 102 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 160
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 206
I G H + + TV ++ + + D L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 47 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 101
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 102 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 160
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 206
I G H + + TV ++ + + D L F TV
Sbjct: 177 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 222
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 47 VATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPN 101
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 102 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 160
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 206
I G H + + TV ++ + + D L F TV
Sbjct: 177 IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVN 222
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 60 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 114
++ ++ GF + G R D++ N I ++K+ PN ++VV NP +
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM 132
Query: 115 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+L + + +P I L LD +R IS++L V DV N I G H +
Sbjct: 133 VQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAHIVGAHGNKMVLLK 190
Query: 174 NHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 206
+ TV ++ + + D L F TV
Sbjct: 191 RYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 58 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 118 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 177
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 178 VTTSKGEKPV 187
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 58 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 118 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 177
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 178 VTTSKGEKPV 187
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 58 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 118 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 177
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 178 VTTSKGEKPV 187
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 60 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 114
++ ++ GF + G R D++ N I ++K+ PN ++VV NP +
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM 132
Query: 115 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+L + + +P I L LD +R IS++L V DV N I G H +
Sbjct: 133 VQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAHIVGAHGNKMVLLK 190
Query: 174 NHATVTTSKGEKPVREAVADDNWLNTEFITTVQ 206
+ TV ++ + + D L F TV
Sbjct: 191 RYITVGGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 58 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 118 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 177
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 178 VTTSKGEKPV 187
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 118 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 177
L + A KNI + +D N+ +G I+ER D+ I G T+ + A+
Sbjct: 23 LNDIAKVXTEKNIGSVIVVDGNKPVGIITER------DIVKAIGKGKSLETKAEEFXTAS 76
Query: 178 VTTSKGEKPVREAVADDNWLNTEFITTVQQRG 209
+ T + + P+ A+A N + V +G
Sbjct: 77 LITIREDSPITGALALXRQFNIRHLPVVDDKG 108
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 52 VDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 111
Query: 81 SKNVSIYKAQASALEKHAAPNC 102
+NV+I+K + KH +P+C
Sbjct: 112 QRNVNIFKFIIPNIVKH-SPDC 132
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 139 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
N+ + ++ ER+K + D ++WG + +P H TT
Sbjct: 115 NKILDKVVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATT 156
>pdb|2I8A|A Chain A, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|B Chain B, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|C Chain C, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|D Chain D, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|E Chain E, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2I8A|F Chain F, Salmonella Typhimurium Liganded By Phosphate Ion At 1.64a
Resolution
pdb|2IQ5|A Chain A, Unliganded Crystal Structure Of The Uridine Phosphorylase
From Salmonella Typhimurium At 1.90 A Resolution
pdb|2IQ5|B Chain B, Unliganded Crystal Structure Of The Uridine Phosphorylase
From Salmonella Typhimurium At 1.90 A Resolution
pdb|2OEC|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2OEC|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Potassium Ion At 2.194a
Resolution
pdb|2QDK|A Chain A, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|B Chain B, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|C Chain C, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|D Chain D, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|E Chain E, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2QDK|F Chain F, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium At 1.62a Resolution
pdb|2RJ3|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
pdb|2RJ3|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Phosphate Ion At 2.49a Resolution
Length = 252
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE----GMER 76
+ A+ L+G + FP + TT +VEA K + VG + G ER
Sbjct: 108 VTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQER 167
Query: 77 KDVMSKNV 84
D S V
Sbjct: 168 YDTYSGRV 175
>pdb|3C74|A Chain A, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine At 2.38a Resolution
pdb|3C74|B Chain B, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine At 2.38a Resolution
pdb|3C74|C Chain C, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine At 2.38a Resolution
pdb|3C74|D Chain D, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine At 2.38a Resolution
pdb|3C74|E Chain E, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine At 2.38a Resolution
pdb|3C74|F Chain F, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine At 2.38a Resolution
Length = 253
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE----GMER 76
+ A+ L+G + FP + TT +VEA K + VG + G ER
Sbjct: 109 VTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQER 168
Query: 77 KDVMSKNV 84
D S V
Sbjct: 169 YDTYSGRV 176
>pdb|2OXF|A Chain A, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium In Homodimeric Form At 1.76a
Resolution
pdb|2OXF|F Chain F, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium In Homodimeric Form At 1.76a
Resolution
Length = 250
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE----GMER 76
+ A+ L+G + FP + TT +VEA K + VG + G ER
Sbjct: 106 VTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQER 165
Query: 77 KDVMSKNV 84
D S V
Sbjct: 166 YDTYSGRV 173
>pdb|1RYZ|A Chain A, Uridine Phosphorylase From Salmonella Typhimurium. Crystal
Structure At 2.9 A Resolution
pdb|1RYZ|B Chain B, Uridine Phosphorylase From Salmonella Typhimurium. Crystal
Structure At 2.9 A Resolution
pdb|1RYZ|C Chain C, Uridine Phosphorylase From Salmonella Typhimurium. Crystal
Structure At 2.9 A Resolution
pdb|1RYZ|D Chain D, Uridine Phosphorylase From Salmonella Typhimurium. Crystal
Structure At 2.9 A Resolution
pdb|1RYZ|E Chain E, Uridine Phosphorylase From Salmonella Typhimurium. Crystal
Structure At 2.9 A Resolution
pdb|1RYZ|F Chain F, Uridine Phosphorylase From Salmonella Typhimurium. Crystal
Structure At 2.9 A Resolution
pdb|1SJ9|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 2.5a Resolution
pdb|1SJ9|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 2.5a Resolution
pdb|1SJ9|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 2.5a Resolution
pdb|1SJ9|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 2.5a Resolution
pdb|1SJ9|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 2.5a Resolution
pdb|1SJ9|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 2.5a Resolution
pdb|1Y1Q|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
Uridine-5p-Monophosphate And Sulfate Ion At 2.35a
Resolution
pdb|1Y1Q|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
Uridine-5p-Monophosphate And Sulfate Ion At 2.35a
Resolution
pdb|1Y1Q|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
Uridine-5p-Monophosphate And Sulfate Ion At 2.35a
Resolution
pdb|1Y1Q|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
Uridine-5p-Monophosphate And Sulfate Ion At 2.35a
Resolution
pdb|1Y1Q|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
Uridine-5p-Monophosphate And Sulfate Ion At 2.35a
Resolution
pdb|1Y1Q|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
Uridine-5p-Monophosphate And Sulfate Ion At 2.35a
Resolution
pdb|1Y1R|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate Ion At 2.11a Resolution
pdb|1Y1R|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate Ion At 2.11a Resolution
pdb|1Y1R|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate Ion At 2.11a Resolution
pdb|1Y1R|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate Ion At 2.11a Resolution
pdb|1Y1R|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate Ion At 2.11a Resolution
pdb|1Y1R|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate Ion At 2.11a Resolution
pdb|1Y1S|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Sulfate Ion At 2.55a Resolution
pdb|1Y1S|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Sulfate Ion At 2.55a Resolution
pdb|1Y1S|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Sulfate Ion At 2.55a Resolution
pdb|1Y1S|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Sulfate Ion At 2.55a Resolution
pdb|1Y1S|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Sulfate Ion At 2.55a Resolution
pdb|1Y1S|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uracil And
Sulfate Ion At 2.55a Resolution
pdb|1Y1T|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 1.77a Resolution
pdb|1Y1T|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium At 1.77a Resolution
pdb|1ZL2|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Phosphate Ion At 1.85a
Resolution
pdb|1ZL2|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Phosphate Ion At 1.85a
Resolution
pdb|1ZL2|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Phosphate Ion At 1.85a
Resolution
pdb|1ZL2|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Phosphate Ion At 1.85a
Resolution
pdb|1ZL2|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Phosphate Ion At 1.85a
Resolution
pdb|1ZL2|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With
2,2'-Anhydrouridine And Phosphate Ion At 1.85a
Resolution
pdb|2HN9|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 2.12a Resolution
pdb|2HN9|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 2.12a Resolution
pdb|2HN9|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 2.12a Resolution
pdb|2HN9|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 2.12a Resolution
pdb|2HN9|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 2.12a Resolution
pdb|2HN9|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 2.12a Resolution
pdb|2HRD|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 1.70a Resolution
pdb|2HRD|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 1.70a Resolution
pdb|2HRD|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 1.70a Resolution
pdb|2HRD|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 1.70a Resolution
pdb|2HRD|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 1.70a Resolution
pdb|2HRD|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Thymine And
Phosphate Ion At 1.70a Resolution
pdb|2HSW|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Unliganded State At 1.99a
Resolution
pdb|2HSW|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Unliganded State At 1.99a
Resolution
pdb|2HWU|A Chain A, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uridine And
Phosphate Ion At 2.91a Resolution
pdb|2HWU|B Chain B, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uridine And
Phosphate Ion At 2.91a Resolution
pdb|2HWU|C Chain C, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uridine And
Phosphate Ion At 2.91a Resolution
pdb|2HWU|D Chain D, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uridine And
Phosphate Ion At 2.91a Resolution
pdb|2HWU|E Chain E, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uridine And
Phosphate Ion At 2.91a Resolution
pdb|2HWU|F Chain F, Crystal Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Uridine And
Phosphate Ion At 2.91a Resolution
pdb|2PGA|A Chain A, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate And Potassium Ion At 1.74 A Resolution
pdb|2PGA|B Chain B, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate And Potassium Ion At 1.74 A Resolution
pdb|2PGA|C Chain C, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate And Potassium Ion At 1.74 A Resolution
pdb|2PGA|D Chain D, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate And Potassium Ion At 1.74 A Resolution
pdb|2PGA|E Chain E, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate And Potassium Ion At 1.74 A Resolution
pdb|2PGA|F Chain F, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With Inhibitor And
Phosphate And Potassium Ion At 1.74 A Resolution
pdb|3DDO|A Chain A, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With By Phosphate Ion
At 1.5a Resolution
pdb|3DDO|B Chain B, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With By Phosphate Ion
At 1.5a Resolution
pdb|3DDO|C Chain C, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With By Phosphate Ion
At 1.5a Resolution
pdb|3DDO|D Chain D, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With By Phosphate Ion
At 1.5a Resolution
pdb|3DDO|E Chain E, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With By Phosphate Ion
At 1.5a Resolution
pdb|3DDO|F Chain F, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With By Phosphate Ion
At 1.5a Resolution
pdb|3DPS|A Chain A, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium In Homodimeric Form At 1.8a
pdb|3DPS|F Chain F, X-Ray Structure Of The Unliganded Uridine Phosphorylase
From Salmonella Typhimurium In Homodimeric Form At 1.8a
pdb|3FWP|A Chain A, X-Ray Structure Of Uridine Nucleoside Phosphorylease From
Salmonella Typhimurium Complexed With Phosphate And Its
Inhibitor 2,2'-Anhydrouridine At 1.86 A Resolution
pdb|3FWP|B Chain B, X-Ray Structure Of Uridine Nucleoside Phosphorylease From
Salmonella Typhimurium Complexed With Phosphate And Its
Inhibitor 2,2'-Anhydrouridine At 1.86 A Resolution
pdb|3FWP|C Chain C, X-Ray Structure Of Uridine Nucleoside Phosphorylease From
Salmonella Typhimurium Complexed With Phosphate And Its
Inhibitor 2,2'-Anhydrouridine At 1.86 A Resolution
pdb|3FWP|D Chain D, X-Ray Structure Of Uridine Nucleoside Phosphorylease From
Salmonella Typhimurium Complexed With Phosphate And Its
Inhibitor 2,2'-Anhydrouridine At 1.86 A Resolution
pdb|3FWP|E Chain E, X-Ray Structure Of Uridine Nucleoside Phosphorylease From
Salmonella Typhimurium Complexed With Phosphate And Its
Inhibitor 2,2'-Anhydrouridine At 1.86 A Resolution
pdb|3FWP|F Chain F, X-Ray Structure Of Uridine Nucleoside Phosphorylease From
Salmonella Typhimurium Complexed With Phosphate And Its
Inhibitor 2,2'-Anhydrouridine At 1.86 A Resolution
pdb|3NSR|A Chain A, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|B Chain B, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|C Chain C, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|D Chain D, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|E Chain E, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|F Chain F, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|G Chain G, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|H Chain H, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
pdb|3NSR|I Chain I, X-Ray Structure Of The Uridine Phosphorylase From
Salmonella Typhimurium In Complex With 5-Fluorouracil At
2.2 A Resolution
Length = 253
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 21 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE----GMER 76
+ A+ L+G + FP + TT +VEA K + VG + G ER
Sbjct: 109 VTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQER 168
Query: 77 KDVMSKNV 84
D S V
Sbjct: 169 YDTYSGRV 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,419,905
Number of Sequences: 62578
Number of extensions: 317461
Number of successful extensions: 834
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 110
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)