Query 021646
Match_columns 309
No_of_seqs 117 out of 1141
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00135 malate dehydrogenase 100.0 1.3E-76 2.8E-81 548.0 34.9 303 1-308 1-308 (309)
2 TIGR01756 LDH_protist lactate 100.0 1.9E-75 4.2E-80 541.5 35.1 303 1-308 4-312 (313)
3 TIGR01759 MalateDH-SF1 malate 100.0 5.6E-74 1.2E-78 534.2 32.8 299 2-304 23-323 (323)
4 PRK05442 malate dehydrogenase; 100.0 1.1E-73 2.4E-78 532.9 32.2 302 2-308 24-326 (326)
5 TIGR01757 Malate-DH_plant mala 100.0 3E-73 6.6E-78 537.2 33.9 301 2-308 64-368 (387)
6 COG0039 Mdh Malate/lactate deh 100.0 6.6E-73 1.4E-77 518.4 31.4 281 15-308 27-311 (313)
7 PLN00112 malate dehydrogenase 100.0 2.5E-72 5.3E-77 538.2 33.3 299 2-308 120-424 (444)
8 cd01338 MDH_choloroplast_like 100.0 5.1E-70 1.1E-74 508.1 32.8 297 2-304 22-320 (322)
9 cd05295 MDH_like Malate dehydr 100.0 3.5E-70 7.5E-75 523.1 32.3 299 1-305 142-451 (452)
10 cd00704 MDH Malate dehydrogena 100.0 4.4E-70 9.6E-75 508.7 30.7 295 2-304 20-322 (323)
11 KOG1495 Lactate dehydrogenase 100.0 2.1E-70 4.5E-75 480.9 25.2 279 8-302 40-328 (332)
12 TIGR01758 MDH_euk_cyt malate d 100.0 3E-69 6.6E-74 503.3 31.3 299 2-305 19-323 (324)
13 cd05290 LDH_3 A subgroup of L- 100.0 5.1E-69 1.1E-73 498.3 31.6 274 14-301 25-306 (307)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 4.5E-68 9.8E-73 490.9 30.8 271 15-299 23-299 (299)
15 cd01336 MDH_cytoplasmic_cytoso 100.0 6.5E-68 1.4E-72 495.1 31.8 298 2-304 22-324 (325)
16 PLN02602 lactate dehydrogenase 100.0 4.5E-65 9.8E-70 478.5 32.2 279 11-304 60-348 (350)
17 cd05293 LDH_1 A subgroup of L- 100.0 8.5E-65 1.8E-69 471.4 31.9 279 10-302 25-311 (312)
18 PRK00066 ldh L-lactate dehydro 100.0 2.6E-64 5.7E-69 469.2 32.0 276 14-304 32-313 (315)
19 cd00300 LDH_like L-lactate deh 100.0 9.8E-64 2.1E-68 463.1 32.1 273 14-301 24-299 (300)
20 cd05291 HicDH_like L-2-hydroxy 100.0 1.1E-63 2.4E-68 464.2 32.1 275 14-302 26-305 (306)
21 KOG1496 Malate dehydrogenase [ 100.0 4.7E-62 1E-66 421.9 22.1 309 1-309 23-331 (332)
22 cd05292 LDH_2 A subgroup of L- 100.0 1.6E-60 3.4E-65 443.2 30.9 274 14-302 26-306 (308)
23 TIGR01763 MalateDH_bact malate 100.0 1.6E-60 3.6E-65 442.0 30.7 271 15-302 27-303 (305)
24 PTZ00117 malate dehydrogenase; 100.0 4.7E-60 1E-64 441.7 33.6 279 15-307 31-317 (319)
25 TIGR01772 MDH_euk_gproteo mala 100.0 2.1E-60 4.6E-65 440.8 29.1 272 12-309 24-311 (312)
26 cd05294 LDH-like_MDH_nadp A la 100.0 1.9E-59 4.1E-64 435.8 31.1 276 15-302 28-307 (309)
27 PTZ00082 L-lactate dehydrogena 100.0 7.6E-59 1.6E-63 433.3 32.7 275 15-303 32-319 (321)
28 cd01337 MDH_glyoxysomal_mitoch 100.0 2.9E-59 6.2E-64 432.6 28.9 272 11-308 24-310 (310)
29 cd01339 LDH-like_MDH L-lactate 100.0 4E-57 8.7E-62 419.3 31.4 271 15-301 24-299 (300)
30 PTZ00325 malate dehydrogenase; 100.0 5.4E-57 1.2E-61 419.2 30.9 274 10-309 31-318 (321)
31 PRK06223 malate dehydrogenase; 100.0 7E-56 1.5E-60 412.2 31.4 273 15-303 28-305 (307)
32 PRK05086 malate dehydrogenase; 100.0 9.6E-56 2.1E-60 411.1 30.3 270 14-309 28-311 (312)
33 PLN00106 malate dehydrogenase 100.0 1E-54 2.2E-59 404.4 29.2 264 15-302 46-322 (323)
34 cd00650 LDH_MDH_like NAD-depen 100.0 3.1E-50 6.6E-55 366.6 29.3 235 12-301 25-262 (263)
35 KOG1494 NAD-dependent malate d 100.0 1.9E-50 4.2E-55 356.5 19.3 283 5-309 35-340 (345)
36 PF02866 Ldh_1_C: lactate/mala 100.0 3.5E-39 7.5E-44 276.6 17.2 168 134-308 1-174 (174)
37 PF00056 Ldh_1_N: lactate/mala 100.0 1.9E-29 4.2E-34 208.9 11.3 114 14-131 27-140 (141)
38 cd05197 GH4_glycoside_hydrolas 99.9 9.8E-20 2.1E-24 175.8 25.7 266 14-303 30-390 (425)
39 PRK15076 alpha-galactosidase; 99.9 2.3E-19 5.1E-24 173.7 25.2 268 15-304 32-385 (431)
40 cd05296 GH4_P_beta_glucosidase 99.8 7.1E-18 1.5E-22 162.7 26.5 269 14-303 30-379 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 99.7 1.7E-15 3.6E-20 146.8 28.3 272 14-304 30-394 (437)
42 cd05297 GH4_alpha_glucosidase_ 99.7 5.7E-16 1.2E-20 150.2 24.1 270 14-303 30-387 (423)
43 COG1486 CelF Alpha-galactosida 98.9 4.4E-07 9.6E-12 87.2 24.0 274 14-304 33-397 (442)
44 PF02056 Glyco_hydro_4: Family 98.5 3.7E-06 8E-11 72.3 13.9 130 13-150 28-182 (183)
45 COG1004 Ugd Predicted UDP-gluc 91.8 3.8 8.2E-05 39.5 12.6 87 15-113 25-126 (414)
46 PF03721 UDPG_MGDP_dh_N: UDP-g 88.5 2.4 5.1E-05 36.5 7.8 95 15-121 25-138 (185)
47 PF11975 Glyco_hydro_4C: Famil 82.3 11 0.00024 33.4 9.2 66 237-304 147-214 (232)
48 PLN02353 probable UDP-glucose 76.5 17 0.00037 36.1 9.3 66 46-112 66-132 (473)
49 TIGR01915 npdG NADPH-dependent 70.0 33 0.00071 30.0 8.7 78 15-112 26-105 (219)
50 PRK05808 3-hydroxybutyryl-CoA 66.9 15 0.00033 33.4 6.1 45 45-104 70-114 (282)
51 PRK09458 pspB phage shock prot 65.7 13 0.00028 27.2 4.2 29 281-309 35-66 (75)
52 PRK08293 3-hydroxybutyryl-CoA 65.4 23 0.00049 32.4 7.0 46 45-104 71-116 (287)
53 PF01210 NAD_Gly3P_dh_N: NAD-d 65.3 22 0.00047 29.4 6.3 75 14-108 23-103 (157)
54 PRK07819 3-hydroxybutyryl-CoA 64.4 27 0.00059 32.1 7.3 48 45-109 72-120 (286)
55 PRK09260 3-hydroxybutyryl-CoA 64.1 32 0.0007 31.4 7.7 23 45-67 68-90 (288)
56 TIGR00640 acid_CoA_mut_C methy 63.0 35 0.00077 27.6 6.9 66 57-137 52-117 (132)
57 TIGR03026 NDP-sugDHase nucleot 62.4 67 0.0015 31.0 9.9 57 46-108 64-120 (411)
58 PF11239 DUF3040: Protein of u 59.2 11 0.00023 27.9 2.9 21 280-300 1-21 (82)
59 cd01836 FeeA_FeeB_like SGNH_hy 58.7 34 0.00073 28.7 6.4 50 57-110 66-115 (191)
60 PRK06130 3-hydroxybutyryl-CoA 58.6 62 0.0014 29.7 8.7 21 46-66 67-87 (311)
61 PRK07530 3-hydroxybutyryl-CoA 58.5 31 0.00068 31.5 6.6 20 46-66 72-91 (292)
62 PF08885 GSCFA: GSCFA family; 57.0 21 0.00046 32.3 5.0 64 51-115 94-181 (251)
63 PF02737 3HCDH_N: 3-hydroxyacy 55.2 29 0.00062 29.5 5.4 49 44-109 65-113 (180)
64 PRK07066 3-hydroxybutyryl-CoA 54.3 44 0.00095 31.4 6.8 55 45-115 70-124 (321)
65 cd01838 Isoamyl_acetate_hydrol 54.2 43 0.00093 27.9 6.3 49 58-110 63-116 (199)
66 PRK08269 3-hydroxybutyryl-CoA 53.5 39 0.00086 31.5 6.4 52 45-112 64-117 (314)
67 cd01833 XynB_like SGNH_hydrola 51.9 51 0.0011 26.5 6.2 48 57-109 39-87 (157)
68 cd02071 MM_CoA_mut_B12_BD meth 51.0 83 0.0018 24.7 7.1 66 57-137 49-114 (122)
69 PLN02545 3-hydroxybutyryl-CoA 49.1 58 0.0013 29.8 6.8 16 51-66 76-91 (295)
70 PF01073 3Beta_HSD: 3-beta hyd 48.2 64 0.0014 29.4 6.8 57 50-108 58-115 (280)
71 PF02310 B12-binding: B12 bind 47.4 81 0.0017 24.2 6.5 74 88-171 41-118 (121)
72 PRK12549 shikimate 5-dehydroge 47.4 42 0.00091 30.8 5.5 51 15-69 153-205 (284)
73 PF04016 DUF364: Domain of unk 47.3 12 0.00026 30.9 1.7 79 48-147 52-130 (147)
74 PRK06035 3-hydroxyacyl-CoA deh 46.0 76 0.0016 29.0 7.0 43 53-109 80-122 (291)
75 PF02423 OCD_Mu_crystall: Orni 45.9 42 0.00091 31.3 5.3 49 13-67 153-201 (313)
76 KOG1683 Hydroxyacyl-CoA dehydr 45.8 23 0.00049 33.9 3.4 50 48-111 59-108 (380)
77 PRK15098 beta-D-glucoside gluc 45.6 22 0.00048 37.6 3.7 55 54-113 497-557 (765)
78 cd01844 SGNH_hydrolase_like_6 44.6 48 0.001 27.5 5.1 48 57-111 56-103 (177)
79 PF04026 SpoVG: SpoVG; InterP 44.6 38 0.00083 25.3 3.9 35 259-294 41-76 (84)
80 COG1250 FadB 3-hydroxyacyl-CoA 44.6 64 0.0014 30.2 6.2 84 51-150 75-175 (307)
81 PRK06407 ornithine cyclodeamin 44.3 44 0.00095 31.0 5.1 50 13-67 142-191 (301)
82 cd04121 Rab40 Rab40 subfamily. 43.5 43 0.00093 28.6 4.6 48 55-113 75-122 (189)
83 cd04502 SGNH_hydrolase_like_7 42.9 68 0.0015 26.3 5.7 48 57-109 49-97 (171)
84 cd01841 NnaC_like NnaC (CMP-Ne 42.7 84 0.0018 25.7 6.3 51 57-111 50-101 (174)
85 COG2247 LytB Putative cell wal 42.6 1.1E+02 0.0024 28.8 7.3 69 90-161 67-138 (337)
86 PRK15057 UDP-glucose 6-dehydro 42.4 3E+02 0.0066 26.5 10.8 67 46-118 61-128 (388)
87 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 41.0 62 0.0013 27.4 5.2 49 55-113 73-121 (182)
88 cd01831 Endoglucanase_E_like E 40.9 95 0.0021 25.5 6.3 48 59-111 56-106 (169)
89 COG0565 LasT rRNA methylase [T 40.7 50 0.0011 29.8 4.6 58 8-71 28-85 (242)
90 PRK07680 late competence prote 40.3 1.4E+02 0.003 26.9 7.7 74 13-112 27-100 (273)
91 PRK15182 Vi polysaccharide bio 39.9 2.3E+02 0.005 27.7 9.6 52 14-72 29-90 (425)
92 TIGR01724 hmd_rel H2-forming N 39.6 2.7E+02 0.0059 26.4 9.4 45 15-67 45-90 (341)
93 cd01820 PAF_acetylesterase_lik 38.8 93 0.002 26.7 6.1 46 58-108 89-135 (214)
94 cd01827 sialate_O-acetylestera 38.8 1.1E+02 0.0025 25.2 6.5 49 57-109 66-116 (188)
95 PF06667 PspB: Phage shock pro 38.7 61 0.0013 23.7 4.1 30 280-309 34-66 (75)
96 KOG0093 GTPase Rab3, small G p 38.0 33 0.00072 28.7 2.9 31 83-113 108-138 (193)
97 cd04131 Rnd Rnd subfamily. Th 37.9 71 0.0015 26.8 5.1 49 55-113 69-117 (178)
98 cd01828 sialate_O-acetylestera 37.1 1.2E+02 0.0025 24.7 6.3 49 57-110 47-96 (169)
99 PLN03080 Probable beta-xylosid 37.1 37 0.00081 36.0 3.8 58 54-113 483-544 (779)
100 TIGR02441 fa_ox_alpha_mit fatt 36.7 64 0.0014 34.0 5.5 88 45-151 402-508 (737)
101 cd01823 SEST_like SEST_like. A 36.5 1.2E+02 0.0026 26.7 6.7 25 84-109 130-154 (259)
102 PF00071 Ras: Ras family; Int 36.3 61 0.0013 26.0 4.3 50 54-113 67-116 (162)
103 PRK07531 bifunctional 3-hydrox 36.1 1.2E+02 0.0027 30.1 7.2 21 46-66 68-88 (495)
104 PRK13259 regulatory protein Sp 35.8 64 0.0014 24.7 3.9 35 259-294 41-76 (94)
105 PF02698 DUF218: DUF218 domain 35.8 1.6E+02 0.0034 23.8 6.7 39 111-151 56-98 (155)
106 cd01825 SGNH_hydrolase_peri1 S 35.6 1.2E+02 0.0026 24.9 6.2 49 57-110 55-105 (189)
107 PF02719 Polysacc_synt_2: Poly 35.5 74 0.0016 29.6 5.1 101 12-115 22-139 (293)
108 PF03807 F420_oxidored: NADP o 35.3 82 0.0018 23.1 4.6 71 12-110 24-96 (96)
109 PRK07589 ornithine cyclodeamin 35.1 80 0.0017 30.0 5.4 49 13-67 154-202 (346)
110 COG2179 Predicted hydrolase of 35.1 2E+02 0.0044 24.5 7.1 80 84-177 48-128 (175)
111 cd04120 Rab12 Rab12 subfamily. 34.7 76 0.0017 27.4 4.9 50 54-113 68-117 (202)
112 COG0240 GpsA Glycerol-3-phosph 34.5 1.7E+02 0.0037 27.7 7.4 61 45-121 58-123 (329)
113 cd02067 B12-binding B12 bindin 34.1 1.4E+02 0.0031 23.0 6.0 48 57-117 49-97 (119)
114 TIGR02371 ala_DH_arch alanine 33.0 86 0.0019 29.4 5.2 49 13-67 153-201 (325)
115 PF01915 Glyco_hydro_3_C: Glyc 33.0 16 0.00034 32.1 0.3 58 53-113 80-146 (227)
116 PRK11154 fadJ multifunctional 32.8 1.2E+02 0.0026 31.7 6.8 92 44-153 376-485 (708)
117 PRK02261 methylaspartate mutas 32.2 1.8E+02 0.0038 23.6 6.3 67 57-138 53-125 (137)
118 PRK00094 gpsA NAD(P)H-dependen 32.2 2.7E+02 0.0058 25.4 8.4 51 46-112 59-109 (325)
119 PF15605 Toxin_52: Putative to 32.1 40 0.00088 26.1 2.3 40 270-309 63-102 (103)
120 TIGR02976 phageshock_pspB phag 31.8 93 0.002 22.7 4.1 29 281-309 35-66 (75)
121 PRK12439 NAD(P)H-dependent gly 31.7 1.1E+02 0.0023 28.9 5.6 61 45-121 64-129 (341)
122 PRK06823 ornithine cyclodeamin 31.7 1E+02 0.0022 28.8 5.5 48 14-67 154-201 (315)
123 TIGR01723 hmd_TIGR 5,10-methen 31.6 50 0.0011 30.6 3.2 59 45-121 126-184 (340)
124 PF00185 OTCace: Aspartate/orn 31.0 65 0.0014 26.8 3.7 24 43-66 58-81 (158)
125 KOG0092 GTPase Rab5/YPT51 and 30.7 1.5E+02 0.0033 25.9 5.8 50 56-115 75-124 (200)
126 PRK12921 2-dehydropantoate 2-r 30.5 2E+02 0.0043 26.1 7.2 48 54-117 64-111 (305)
127 TIGR03376 glycerol3P_DH glycer 30.2 1.4E+02 0.0029 28.4 6.1 48 45-108 69-116 (342)
128 TIGR01777 yfcH conserved hypot 30.0 1.1E+02 0.0023 27.2 5.3 48 52-99 51-102 (292)
129 TIGR00112 proC pyrroline-5-car 29.6 2.8E+02 0.0061 24.6 7.9 75 12-113 8-82 (245)
130 KOG0652 26S proteasome regulat 29.4 1E+02 0.0022 28.5 4.7 69 85-154 293-363 (424)
131 TIGR02279 PaaC-3OHAcCoADH 3-hy 28.6 1.3E+02 0.0027 30.2 5.8 51 45-112 72-122 (503)
132 TIGR02437 FadB fatty oxidation 28.5 1.8E+02 0.0038 30.6 7.1 90 45-151 380-486 (714)
133 PRK12557 H(2)-dependent methyl 28.4 3.6E+02 0.0078 25.5 8.6 45 15-66 45-89 (342)
134 COG2423 Predicted ornithine cy 28.3 95 0.0021 29.3 4.6 50 13-67 155-204 (330)
135 smart00175 RAB Rab subfamily o 28.2 1.6E+02 0.0035 23.3 5.6 51 53-113 67-117 (164)
136 PRK06199 ornithine cyclodeamin 28.0 1.2E+02 0.0026 29.1 5.4 51 14-67 182-232 (379)
137 cd01832 SGNH_hydrolase_like_1 27.8 1.8E+02 0.0038 23.9 5.9 48 57-110 66-114 (185)
138 cd04133 Rop_like Rop subfamily 27.7 1.3E+02 0.0029 25.2 5.1 50 55-114 69-118 (176)
139 PRK08268 3-hydroxy-acyl-CoA de 27.6 1.9E+02 0.0041 29.0 6.9 21 45-66 74-94 (507)
140 PTZ00345 glycerol-3-phosphate 27.6 1.5E+02 0.0032 28.5 5.8 49 44-108 79-129 (365)
141 PRK06522 2-dehydropantoate 2-r 27.4 2.3E+02 0.0051 25.5 7.1 48 54-117 62-109 (304)
142 cd04122 Rab14 Rab14 subfamily. 27.0 1.5E+02 0.0032 23.9 5.2 50 54-113 70-119 (166)
143 TIGR02440 FadJ fatty oxidation 27.0 1.9E+02 0.004 30.3 6.9 51 45-112 372-422 (699)
144 PRK11730 fadB multifunctional 27.0 1.8E+02 0.0039 30.6 6.8 51 45-112 380-430 (715)
145 PRK00961 H(2)-dependent methyl 26.8 63 0.0014 29.9 3.0 58 45-120 128-185 (342)
146 cd01873 RhoBTB RhoBTB subfamil 26.6 1.3E+02 0.0028 25.7 4.9 49 55-113 84-132 (195)
147 cd00877 Ran Ran (Ras-related n 26.0 1.4E+02 0.0031 24.3 4.9 48 55-113 69-116 (166)
148 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 25.5 1.3E+02 0.0028 26.5 4.8 50 55-114 69-118 (222)
149 PF00448 SRP54: SRP54-type pro 25.5 1.4E+02 0.003 25.8 4.9 69 57-140 82-154 (196)
150 PTZ00099 rab6; Provisional 25.3 1.6E+02 0.0034 24.7 5.1 49 55-113 49-97 (176)
151 PRK11889 flhF flagellar biosyn 25.2 2.9E+02 0.0064 27.1 7.4 67 58-139 320-390 (436)
152 cd05212 NAD_bind_m-THF_DH_Cycl 25.1 1.9E+02 0.004 23.7 5.3 49 15-69 30-82 (140)
153 PRK08618 ornithine cyclodeamin 25.0 1.3E+02 0.0029 28.0 5.0 51 14-69 153-203 (325)
154 PRK14620 NAD(P)H-dependent gly 24.9 3.8E+02 0.0082 24.7 8.1 51 45-111 57-109 (326)
155 cd05312 NAD_bind_1_malic_enz N 24.7 48 0.001 30.6 1.9 70 50-137 95-170 (279)
156 smart00176 RAN Ran (Ras-relate 24.5 1.5E+02 0.0032 25.6 4.9 48 55-113 64-111 (200)
157 cd01864 Rab19 Rab19 subfamily. 24.2 1.6E+02 0.0034 23.7 4.9 49 55-113 72-120 (165)
158 cd01865 Rab3 Rab3 subfamily. 24.2 1.6E+02 0.0034 23.8 4.9 50 54-113 69-118 (165)
159 PRK09243 nicotinate phosphorib 24.2 1.8E+02 0.0039 28.9 5.9 21 124-144 283-303 (464)
160 PF07685 GATase_3: CobB/CobQ-l 23.9 79 0.0017 26.1 2.9 40 53-96 2-41 (158)
161 PF00919 UPF0004: Uncharacteri 23.8 2.9E+02 0.0063 21.0 5.8 42 57-108 35-76 (98)
162 PF11458 Mistic: Membrane-inte 23.8 1.6E+02 0.0034 21.6 3.9 28 281-308 2-29 (84)
163 PF13460 NAD_binding_10: NADH( 23.7 1.9E+02 0.0041 23.7 5.3 44 52-108 54-97 (183)
164 PF14164 YqzH: YqzH-like prote 23.7 1E+02 0.0022 21.8 2.9 20 280-299 24-43 (64)
165 COG1454 EutG Alcohol dehydroge 23.6 93 0.002 30.0 3.7 77 59-148 30-111 (377)
166 cd01867 Rab8_Rab10_Rab13_like 23.5 1.6E+02 0.0036 23.7 4.8 50 54-113 71-120 (167)
167 PRK08291 ectoine utilization p 23.3 1.6E+02 0.0036 27.5 5.3 49 15-68 159-207 (330)
168 PRK06141 ornithine cyclodeamin 23.3 1.7E+02 0.0036 27.2 5.3 48 14-67 151-198 (314)
169 PRK12723 flagellar biosynthesi 23.2 4E+02 0.0087 25.7 8.0 78 55-145 251-332 (388)
170 cd01839 SGNH_arylesterase_like 23.0 2.3E+02 0.005 24.0 5.8 51 57-110 78-134 (208)
171 cd04113 Rab4 Rab4 subfamily. 22.8 2.1E+02 0.0045 22.7 5.3 49 55-113 69-117 (161)
172 KOG3167 Box H/ACA snoRNP compo 22.7 91 0.002 25.6 2.9 29 87-117 64-94 (153)
173 cd00229 SGNH_hydrolase SGNH_hy 22.7 2.1E+02 0.0046 22.3 5.3 56 53-110 60-115 (187)
174 cd04506 SGNH_hydrolase_YpmR_li 22.6 1.7E+02 0.0036 24.6 4.9 52 56-108 66-128 (204)
175 PLN03209 translocon at the inn 22.6 2.4E+02 0.0052 28.9 6.5 54 53-108 154-207 (576)
176 KOG2303 Predicted NAD synthase 22.1 3.3E+02 0.0072 27.5 7.0 79 73-153 473-562 (706)
177 smart00174 RHO Rho (Ras homolo 22.0 2.3E+02 0.005 22.8 5.5 51 55-115 66-116 (174)
178 PF08477 Miro: Miro-like prote 21.8 1.6E+02 0.0035 22.1 4.2 49 56-112 71-119 (119)
179 cd04124 RabL2 RabL2 subfamily. 21.0 2.1E+02 0.0046 23.0 5.0 50 53-113 67-116 (161)
180 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 20.9 1.7E+02 0.0038 25.9 4.7 49 55-113 81-129 (232)
181 TIGR02992 ectoine_eutC ectoine 20.7 2E+02 0.0044 26.8 5.4 50 14-68 155-204 (326)
182 PLN02688 pyrroline-5-carboxyla 20.5 5E+02 0.011 22.9 7.8 42 13-66 27-69 (266)
183 cd02072 Glm_B12_BD B12 binding 20.4 4.1E+02 0.0089 21.4 6.3 43 57-111 49-91 (128)
184 COG2088 SpoVG Uncharacterized 20.3 2E+02 0.0043 21.7 4.0 38 259-297 41-79 (95)
185 cd04117 Rab15 Rab15 subfamily. 20.3 2.3E+02 0.0051 22.7 5.1 50 54-113 68-117 (161)
186 KOG2304 3-hydroxyacyl-CoA dehy 20.1 50 0.0011 29.8 1.0 51 47-113 85-135 (298)
187 PLN03071 GTP-binding nuclear p 20.1 2.2E+02 0.0047 24.7 5.1 47 56-113 83-129 (219)
No 1
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=1.3e-76 Score=548.00 Aligned_cols=303 Identities=85% Similarity=1.251 Sum_probs=275.7
Q ss_pred CcccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80 (309)
Q Consensus 1 ~~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~ 80 (309)
||++|++||.+++++|+|+|+++++++++|++|||+|++.+..+.+.+.+++|++++||||||||||.+++||++|.+++
T Consensus 1 ~~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll 80 (309)
T PLN00135 1 MIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVM 80 (309)
T ss_pred CcccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHH
Confidence 69999999999999999999997669999999999999866555666555569999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhh-cCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCe-e
Q 021646 81 SKNVSIYKAQASALEKH-AAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDV-K 157 (309)
Q Consensus 81 ~~N~~i~~~i~~~i~~~-~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v-~ 157 (309)
..|++|++++++.|+++ + |+++++++|||||+|||++++. +|+|++| ||+||.|||+|||++||++++++|++| +
T Consensus 81 ~~N~~I~~~i~~~i~~~~~-p~aivivvsNPvDv~t~~~~~~-sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~ 158 (309)
T PLN00135 81 SKNVSIYKSQASALEKHAA-PDCKVLVVANPANTNALILKEF-APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKN 158 (309)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCeEEEEeCCcHHHHHHHHHHH-cCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcee
Confidence 99999999999999996 7 7999999999999999999999 6888877 899999999999999999999999999 5
Q ss_pred eeEEEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhc-CCcChHHHHHHHHHHHHHHHH
Q 021646 158 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA-RKLSSALSAASSACDHIRDWV 236 (309)
Q Consensus 158 ~~vV~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~-kg~t~~~~~a~a~~~~i~~~i 236 (309)
++ ||||||++|||+||+++|+.+++|+|+.+++.+++|+.+++.+++++++++|++. ||+|. +++|+++++++++++
T Consensus 159 ~~-VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~-~~ia~a~~~iv~ai~ 236 (309)
T PLN00135 159 VI-IWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSA-LSAASSACDHIRDWV 236 (309)
T ss_pred eE-EEEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHH-HHHHHHHHHHHHHHH
Confidence 67 5999999999999999998888999999987665666689999999999999998 55554 677889999998766
Q ss_pred hCCCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 237 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 237 ~~~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
.+.++++++|+|++++|+||+|+++|||+||++ ++|++.+++ ++|+++|+++|++|++.|+++++.+..+|
T Consensus 237 ~~~~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~-l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 237 LGTPEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQG-LSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred hCCcCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 641389999999999999999889999999986 889998887 99999999999999999999999998887
No 2
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1.9e-75 Score=541.49 Aligned_cols=303 Identities=38% Similarity=0.658 Sum_probs=270.8
Q ss_pred CcccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80 (309)
Q Consensus 1 ~~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~ 80 (309)
+|++|++|| +|+++|+|+|+++++++++|++|||+|++++..+.....++.+++++||||||||||.|++||++|.+++
T Consensus 4 ~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll 82 (313)
T TIGR01756 4 WIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLL 82 (313)
T ss_pred eeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHH
Confidence 589999999 9999999999997779999999999999844333344444545799999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHH-HHCCCCCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeee
Q 021646 81 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK-EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 159 (309)
Q Consensus 81 ~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~-~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~ 159 (309)
+.|++|+++++++|++|+||++++|++|||+|+|||+++ +. +|+|++.||+||.|||+|||++||++++++|++|+++
T Consensus 83 ~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~-sg~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~ 161 (313)
T TIGR01756 83 TKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHA-PKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161 (313)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHc-CCCCHHHEEecccHHHHHHHHHHHHHhCcChhheeee
Confidence 999999999999999999777999999999999999995 66 8999998999999999999999999999999999888
Q ss_pred EEEeecCCceeeecCCceeecCCCCcchhhh--hcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHh
Q 021646 160 IIWGNHSSTQYPDVNHATVTTSKGEKPVREA--VADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 237 (309)
Q Consensus 160 vV~GehG~s~vp~~S~~~v~~~~~~~pl~~~--~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~ 237 (309)
+||||||++|||+||+++|+. +|.|+..+ +. ++|..+++.+++++++++|++.||+|+|.++|.++++++++++.
T Consensus 162 ~V~GeHG~s~vp~~S~~~V~~--~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~ 238 (313)
T TIGR01756 162 VVWGNHAESMVADLTHAEFTK--NGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLF 238 (313)
T ss_pred EEEECCCCceeecccccEEec--CCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhc
Confidence 679999999999999999964 77886544 32 23556789999999999999999999988766789999987776
Q ss_pred CCCCceEEEeeeecC--CCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 238 GTPKGTWVSMGVYSD--GSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 238 ~~~~~~v~~~sv~~~--g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
+.++++++|+|++++ |+||+++|+|||+||++ ++|+++++++++|+++|+++|++|++.|+++.+.+.+.|
T Consensus 239 ~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 239 GTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred CCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 434789999999985 39999789999999986 999999998799999999999999999999999998766
No 3
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=5.6e-74 Score=534.23 Aligned_cols=299 Identities=65% Similarity=1.018 Sum_probs=270.7
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+.+.+++.+.+++|+|+|+++++++++|++|||+|++++..+++.+..++|++++||||||||||.+++|||+|++++.
T Consensus 23 l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~ 102 (323)
T TIGR01759 23 IASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLS 102 (323)
T ss_pred HHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 45677888899999999999865678999999999999666556677778999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeeeEE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 161 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV 161 (309)
.|++|+++++++|++++||+++++++|||||+|||+++++++|||++|++++|.|||+|||++||++++++|++|++++|
T Consensus 103 ~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V 182 (323)
T TIGR01759 103 KNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVII 182 (323)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEE
Confidence 99999999999999999559999999999999999999993399999954459999999999999999999999987877
Q ss_pred EeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCC
Q 021646 162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPK 241 (309)
Q Consensus 162 ~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~ 241 (309)
|||||++|||+||++++ +|+|+.+++.++.|..+++.+++++++++|++.||+|+|+++|+++++++++++.+.+.
T Consensus 183 ~GeHG~s~v~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~ 258 (323)
T TIGR01759 183 WGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPE 258 (323)
T ss_pred EecCCCceeeccccCEE----CCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcchHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999 99999998877556567999999999999999999999877888999988765543222
Q ss_pred ceEEEeeeecCC-CCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 242 GTWVSMGVYSDG-SYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 242 ~~v~~~sv~~~g-~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
++++|+|++++| +||+|+|+|||+||++ ++|+++++++++|+++|+++|++|++.|+++++++
T Consensus 259 ~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 259 GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDELLEEKEEA 323 (323)
T ss_pred CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999 9999889999999986 99999999778999999999999999999999764
No 4
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-73 Score=532.87 Aligned_cols=302 Identities=60% Similarity=0.946 Sum_probs=273.8
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+.+.+++++++++|+|+|+++++++++|++|||+|++++..+++.++.++|++++||||||||||.+++||++|.++++
T Consensus 24 l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~ 103 (326)
T PRK05442 24 IASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLE 103 (326)
T ss_pred HHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788899999999999999876778999999999998665556677788999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcE-EEechhHHHHHHHHHHHHhCCCCCCeeeeE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRAMGQISERLKVHVSDVKNVI 160 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~i-g~gt~lds~R~~~~la~~l~v~~~~v~~~v 160 (309)
.|++|++++++.|++|++|+++++++|||+|+|||+++++++|||++|| |+ |.|||+|||++||++++++|++|++|+
T Consensus 104 ~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs~R~r~~la~~l~v~~~~V~~~v 182 (326)
T PRK05442 104 ANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLDHNRALSQLAAKAGVPVADIKKMT 182 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHHHHHHHHHHHHHhCcChHHeEEeE
Confidence 9999999999999998867999999999999999999999449999995 66 999999999999999999999999987
Q ss_pred EEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCC
Q 021646 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240 (309)
Q Consensus 161 V~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~ 240 (309)
||||||++|||+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||+|+|++.++++++++++++.+++
T Consensus 183 V~GeHG~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~a~~~~~~iv~ail~~~~ 258 (326)
T PRK05442 183 VWGNHSATQYPDFRHATI----DGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSAASAANAAIDHVRDWVLGTP 258 (326)
T ss_pred EEECCcCceeeccccCEE----CCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999 9999999987666756789999999999999999999987655436898887665533
Q ss_pred CceEEEeeeecCCCCCCCCceEEEEeEEecCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 241 ~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
+++++|+|++++|+||+|+++|||+||++.+|+++++++++|+++|+++|++|++.|+++.+.+..+|
T Consensus 259 ~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~~~~~~~~~~ 326 (326)
T PRK05442 259 EGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQGLEIDDFSREKIDATLAELEEERDAVKHLL 326 (326)
T ss_pred CCeEEEEEEEecCccCCcCCeEEEEEEEEcCcEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 79999999999999999889999999874499999976699999999999999999999999887654
No 5
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=3e-73 Score=537.21 Aligned_cols=301 Identities=43% Similarity=0.708 Sum_probs=276.1
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+++.+++.+|++.|+|+|++.++++++|++|||+|++++..+++++.+++|++++||||||||||.|++||++|.+++.
T Consensus 64 l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~ 143 (387)
T TIGR01757 64 LASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLD 143 (387)
T ss_pred HHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHH
Confidence 67899999999999999955556899999999999998666556777788999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVI 160 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~v 160 (309)
.|++|++++++.|++++.|++++||+|||+|+|||+++++ +|+|++| ||+||.|||+|||++||++++++|++|++++
T Consensus 144 ~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~-sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~ 222 (387)
T TIGR01757 144 INGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKN-APNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVT 222 (387)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHH-cCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeE
Confidence 9999999999999998767999999999999999999999 5777766 8999999999999999999999999996343
Q ss_pred EEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCC
Q 021646 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240 (309)
Q Consensus 161 V~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~ 240 (309)
||||||++|||+||+++| +|+|+.+++.++.|..+++.+.+++++++|++.||+|+|+++|.++++++++|+.+.+
T Consensus 223 V~GeHGds~vp~~S~a~V----~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d 298 (387)
T TIGR01757 223 IWGNHSTTQVPDFVNAKI----GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTP 298 (387)
T ss_pred EEecCCCcEEecceeeEE----CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Confidence 699999999999999999 9999999887666767899999999999999999999987888899999988775555
Q ss_pred CceEEEeeeecCCC-CCCCCceEEEEeEEe-cCCcEEEe-CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 241 KGTWVSMGVYSDGS-YGIPEGLIYSFPVTC-EKGEWSIV-KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 241 ~~~v~~~sv~~~g~-ygi~~~v~~s~Pv~~-~~Gv~~i~-~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
+++++|+|++++|+ ||+++|+|||+||++ ++|+|+++ + ++|+++|+++|++|++.|+++.+.+.+++
T Consensus 299 ~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~-l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 299 EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATD-VSMDDFLRERIRKSEDELLKEKECVAHLI 368 (387)
T ss_pred CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999997 998889999999986 89999996 6 99999999999999999999999988765
No 6
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=6.6e-73 Score=518.43 Aligned_cols=281 Identities=33% Similarity=0.471 Sum_probs=260.8
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeecC-ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~-~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
+|+|+|++ +++++|++|||+|++++......+.. ++|++++|||+||||||.||||||+|+||+..|++|+++++++
T Consensus 27 el~LiDi~--~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~ 104 (313)
T COG0039 27 ELVLIDIN--EEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKA 104 (313)
T ss_pred eEEEEEcc--cccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHH
Confidence 89999997 78999999999999987766666654 6699999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
++++| |+++++|+|||||+|||++|++ +|+|++| ||+||.|||+||+++||++++++|++|++|+ +||||++|||+
T Consensus 105 i~~~~-~d~ivlVvtNPvD~~ty~~~k~-sg~p~~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~V-iGeHGdt~vp~ 181 (313)
T COG0039 105 IAKYA-PDAIVLVVTNPVDILTYIAMKF-SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYV-IGEHGDTMVPL 181 (313)
T ss_pred HHhhC-CCeEEEEecCcHHHHHHHHHHh-cCCCccceecccchHHHHHHHHHHHHHhCCChhHceeeE-eccCCCceEEe
Confidence 99999 5999999999999999999999 7999988 8999999999999999999999999999996 79999999999
Q ss_pred cCCceeecCCCCcchhhhhc-ccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeeec
Q 021646 173 VNHATVTTSKGEKPVREAVA-DDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYS 251 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~-~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~~ 251 (309)
||+++| +|+|+.++++ .+.|..+++.++|+++|++|++.||+.+++++|.++++++++ |+.+ +++++|+|+++
T Consensus 182 ~S~a~v----~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~~~~a-il~d-~~~vl~~s~~l 255 (313)
T COG0039 182 WSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALARMVEA-ILRD-EKRVLPVSVYL 255 (313)
T ss_pred eeeeeE----CCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHHHHHH-HHcC-CCceEEEEEee
Confidence 999999 9999999987 466666899999999999999999874667889999998875 5555 89999999999
Q ss_pred CCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 252 DGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 252 ~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
+|+||+ +|+|||+|+++ ++|++++++ ++|+++|+++|++|++.+++.++.+..++
T Consensus 256 ~G~yg~-~dv~~gvP~~lg~~Gv~~iie-~~l~~~E~~~l~~s~~~lk~~i~~~~~~~ 311 (313)
T COG0039 256 DGEYGV-EDVYFGVPAVLGKNGVEEILE-LLLSDDEQEKLDKSAEELKKNIELVKELV 311 (313)
T ss_pred cCccCc-CCeEEEeeEEEcCCCcEEEec-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999995 89999999986 999999998 99999999999999999999999988765
No 7
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2.5e-72 Score=538.16 Aligned_cols=299 Identities=42% Similarity=0.670 Sum_probs=274.9
Q ss_pred cccccccCCCCeE--EEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHH
Q 021646 2 IARGIMLGPDQPV--ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDV 79 (309)
Q Consensus 2 ~~~g~~~~~~~~~--~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~ 79 (309)
|+.+++||.+|++ +|+|+|++ +++++|++|||+|+++++..++.+..++|++++||||||||+|.|++|||+|.|+
T Consensus 120 L~~~~v~g~~~~i~~eLvliD~~--~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dL 197 (444)
T PLN00112 120 LASGEVFGPDQPIALKLLGSERS--KQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADL 197 (444)
T ss_pred HHhcccccCCCCcccEEEEEcCC--cchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHH
Confidence 6789999999998 68888886 7899999999999996665677777889999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhh-hcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCee
Q 021646 80 MSKNVSIYKAQASALEK-HAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVK 157 (309)
Q Consensus 80 ~~~N~~i~~~i~~~i~~-~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~ 157 (309)
++.|++|++++++.|++ ++ |++++||+|||||+|||++++. +|+|++| ||+||.|||+|||++||+++++++++|+
T Consensus 198 l~~N~~I~k~i~~~I~~~a~-p~~ivIVVsNPvDv~t~v~~k~-sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~ 275 (444)
T PLN00112 198 LDINGQIFAEQGKALNEVAS-RNVKVIVVGNPCNTNALICLKN-APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCeEEEEcCCcHHHHHHHHHHH-cCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcc
Confidence 99999999999999999 57 7999999999999999999999 5777766 8999999999999999999999999997
Q ss_pred eeEEEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHh
Q 021646 158 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 237 (309)
Q Consensus 158 ~~vV~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~ 237 (309)
+++||||||++|||+||+++| +|+|+.+++.+++|+.+++.++++++|++|++.||+++|+++|.++++++++|+.
T Consensus 276 ~~~V~GeHGdsqvp~wS~a~V----~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~ 351 (444)
T PLN00112 276 NVTIWGNHSTTQVPDFLNAKI----NGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVT 351 (444)
T ss_pred cceEEecCCCceeeccceeEE----CCccHHHhhccccchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHc
Confidence 754699999999999999999 9999999987777877899999999999999999999987888899999987775
Q ss_pred CCCCceEEEeeeecCC-CCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 238 GTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 238 ~~~~~~v~~~sv~~~g-~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
+.++++++|+|++++| +||+++|+|||+||++ ++|+++++++++|+++|+++|++|+++|.++.+.+..++
T Consensus 352 ~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa~~L~~e~~~~~~~~ 424 (444)
T PLN00112 352 PTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSEAELLAEKRCVAHLT 424 (444)
T ss_pred CCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5558999999999999 5998899999999986 899999993399999999999999999999999887664
No 8
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.1e-70 Score=508.08 Aligned_cols=297 Identities=57% Similarity=0.879 Sum_probs=269.8
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+.+.+++.+++.+|+|+|++++.++++|++|||+|++++..+++.+.+++|++++||||||||||.+++||++|.+++.
T Consensus 22 l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~ 101 (322)
T cd01338 22 IASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLK 101 (322)
T ss_pred HHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788899899999999999876778999999999999665556777788999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcE-EEechhHHHHHHHHHHHHhCCCCCCeeeeE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRAMGQISERLKVHVSDVKNVI 160 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~i-g~gt~lds~R~~~~la~~l~v~~~~v~~~v 160 (309)
.|++|++++++.|++++||++++|++|||+|+|||++++.++++|++++ |+ |.|||+||++++|+++++++++|++++
T Consensus 102 ~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~Rl~~~la~~lgv~~~~v~~~~ 180 (322)
T cd01338 102 ANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHNRAKSQLAKKAGVPVTDVKNMV 180 (322)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 9999999999999999966999999999999999999999436999995 66 999999999999999999999999987
Q ss_pred EEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCC
Q 021646 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240 (309)
Q Consensus 161 V~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~ 240 (309)
||||||+++||+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||+|+|.+.++++++++++++.+.+
T Consensus 181 V~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~ 256 (322)
T cd01338 181 IWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSAASAANAAIDHMRDWVLGTP 256 (322)
T ss_pred EEeCCcccEEEehhhcEE----CCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999 9999998876666656799999999999999999999987654689998886654421
Q ss_pred CceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 241 ~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
+++++|+|++++|+||+|+++|||+||++ ++|++++++ ++|+++|+++|++|++.|+++.+++
T Consensus 257 ~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~~l~~~~~~~ 320 (322)
T cd01338 257 EGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEG-LEIDDFAREKIDATLAELLEEREAV 320 (322)
T ss_pred CCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 26999999999999999899999999986 999999997 9999999999999999999998765
No 9
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.5e-70 Score=523.07 Aligned_cols=299 Identities=33% Similarity=0.565 Sum_probs=267.6
Q ss_pred CcccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80 (309)
Q Consensus 1 ~~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~ 80 (309)
|||+|++||++||++|+|+|+.+++++++|++|||+|+++++.+++.+++++|++++||||||||+|.||+|||+|.|++
T Consensus 142 ~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL 221 (452)
T cd05295 142 SLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCI 221 (452)
T ss_pred HHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHH
Confidence 68999999999999999999966689999999999999987776778888899999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhcCC-CcEEEEecCchhHHHHHHHHHCCCCCCCcE-EEechhHHHHHHHHHHHHhCCCCCCeee
Q 021646 81 SKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRAMGQISERLKVHVSDVKN 158 (309)
Q Consensus 81 ~~N~~i~~~i~~~i~~~~~p-~~~vivvsnPvd~~t~~~~~~~~~~~~~~i-g~gt~lds~R~~~~la~~l~v~~~~v~~ 158 (309)
+.|++|++++++.|++++|| +++++++|||+|+||++++++++|+|++|| |+|| ||++||+++||+++++++++|++
T Consensus 222 ~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~ 300 (452)
T cd05295 222 RSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKD 300 (452)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHcee
Confidence 99999999999999999942 778888889999999999999669999995 6666 88999999999999999999987
Q ss_pred eEEEeecCCceeeecCCceeecCC----C----CcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHH
Q 021646 159 VIIWGNHSSTQYPDVNHATVTTSK----G----EKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACD 230 (309)
Q Consensus 159 ~vV~GehG~s~vp~~S~~~v~~~~----~----~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~ 230 (309)
++||||||++|||+||+++|..++ + ++|+.+++.+++|..+++.+.++++++ +.||+|. +++|.|+++
T Consensus 301 ~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~---~rkgsT~-~siA~A~~~ 376 (452)
T cd05295 301 VIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS---SLNHEAA-ISPAHAIAT 376 (452)
T ss_pred eEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHH---hccCChH-HHHHHHHHH
Confidence 668999999999999999993210 0 299999987777877889999999988 5566444 677889999
Q ss_pred HHHHHHhCCCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021646 231 HIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAY 305 (309)
Q Consensus 231 ~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~ 305 (309)
++++|+.+.++++++|+||+++|+||+|+|+|||+||++ ++|++.+.+ ++|+++|+++|++|+++|.++.+.+.
T Consensus 377 iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~-L~L~e~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 377 TLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTD-LELSEILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred HHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999887765458999999999999999999999999987 889998886 99999999999999999999988763
No 10
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.4e-70 Score=508.71 Aligned_cols=295 Identities=59% Similarity=0.893 Sum_probs=267.0
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+.+.+++.+++.+|+|+|++++.++++|+++||+|++++..+.+.+..+.+++++|||+||+|||.+++||++|.+++.
T Consensus 20 L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~ 99 (323)
T cd00704 20 IASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLR 99 (323)
T ss_pred HHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHH
Confidence 56677888888999999999843378999999999998666656677778899999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCC-CCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeeeE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS-IPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 160 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~-~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~v 160 (309)
.|++|++++++.|+++|.|++++|++|||||+|||+++++ +| +|++||+++|.|||+|||++||++++++|++|++++
T Consensus 100 ~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~ 178 (323)
T cd00704 100 KNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKN-APNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVI 178 (323)
T ss_pred HhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeee
Confidence 9999999999999999536999999999999999999999 58 699996566999999999999999999999998766
Q ss_pred EEeecCCceeeecCCceeecCCCCcchhhhh---cccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHh
Q 021646 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAV---ADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 237 (309)
Q Consensus 161 V~GehG~s~vp~~S~~~v~~~~~~~pl~~~~---~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~ 237 (309)
||||||++++|+||+++| +|+|+.++. .+++|..+++.+++++++++|++.||+|+|+++|+++++++.+++.
T Consensus 179 V~GeHG~s~v~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~~~a~a~~~iv~ail~ 254 (323)
T cd00704 179 IWGNHSNTQVPDLSNAVV----YGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAASAAKAIADHVKDWLF 254 (323)
T ss_pred EEecccCceeecccccee----cCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchhHHHHHHHHHHHHHHHh
Confidence 799999999999999999 999998874 3345556789999999999999999999987778899999886664
Q ss_pred CCCCc--eEEEeeeecCCCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 238 GTPKG--TWVSMGVYSDGSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 238 ~~~~~--~v~~~sv~~~g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
+ ++ +++|||++++|+| |+|+|+|||+||++ ++|++++++ ++|+++|+++|++|++.|+++.+.+
T Consensus 255 ~--~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~-l~L~~~E~~~l~~s~~~l~~~~~~~ 322 (323)
T cd00704 255 G--TPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVED-LKLNDWLREKLKATEEELIEEKEIA 322 (323)
T ss_pred C--CCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4 56 9999999999999 99889999999986 999999997 9999999999999999999998876
No 11
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.1e-70 Score=480.93 Aligned_cols=279 Identities=26% Similarity=0.371 Sum_probs=252.9
Q ss_pred cCCCCeEEEEEEecCCccchhhHHHHHHhhccCCC-CcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHH
Q 021646 8 LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSI 86 (309)
Q Consensus 8 ~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~-~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i 86 (309)
+.++-..+|+|+|++ +++++|++|||+|++.++ .+++... .+|...+++++||||||..+++|++|++++++|..|
T Consensus 40 L~k~Ladel~lvDv~--~dklkGE~MDLqH~s~f~~~~~V~~~-~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~i 116 (332)
T KOG1495|consen 40 LLKGLADELVLVDVN--EDKLKGEMMDLQHGSAFLSTPNVVAS-KDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDI 116 (332)
T ss_pred HHhhhhhceEEEecC--cchhhhhhhhhccccccccCCceEec-CcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHH
Confidence 345556689999997 789999999999999654 4555544 578999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeec
Q 021646 87 YKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 165 (309)
Q Consensus 87 ~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~Geh 165 (309)
+|.++|++.+|. |+++++|+|||||+|||++||. +|||++| ||+||+|||+|||++++++|+++|++|++|+ +|||
T Consensus 117 fK~iip~lv~yS-pd~~llvvSNPVDilTYv~wKL-SgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwI-iGEH 193 (332)
T KOG1495|consen 117 FKAIIPALVKYS-PDCILLVVSNPVDILTYVTWKL-SGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWI-IGEH 193 (332)
T ss_pred HHHHHHHHhhcC-CCeEEEEecCchHHHHHHHHHH-cCCcccceeccCcCccHHHHHHHHHHHhCCCcccceEEE-eecc
Confidence 999999999997 8999999999999999999999 7999999 7999999999999999999999999999996 7999
Q ss_pred CCceeeecCCceeecCCCCcchhhhhcc-------cccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhC
Q 021646 166 SSTQYPDVNHATVTTSKGEKPVREAVAD-------DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLG 238 (309)
Q Consensus 166 G~s~vp~~S~~~v~~~~~~~pl~~~~~~-------~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~ 238 (309)
|++.||+||.++| .|.|+.++..+ +.| +|+.++|.+++|+|++.||||+|.. +.++++++. +|+.
T Consensus 194 GdSsV~vWSgvni----AGv~l~~l~~~~~t~~d~e~w--~eihK~v~~sayeviklKGyTswaI-glsva~l~~-ail~ 265 (332)
T KOG1495|consen 194 GDSSVPVWSGVNI----AGVSLKDLNPDLGTDYDPENW--KEIHKQVVDSAYEVIKLKGYTSWAI-GLSVADLAQ-AILR 265 (332)
T ss_pred CCccceecccccc----cceEHhHhChhhcCCCCHHHH--HHHHHHHHHHHHHHHHhcCchHHHH-HHHHHHHHH-HHHh
Confidence 9999999999999 99999988643 235 5899999999999999999999864 668888776 5667
Q ss_pred CCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021646 239 TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 239 ~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
+ .++++|+|+..+|.|||..++|+|+|+++ ++|+..++. .+||++|.++|++|++.|.+.+.
T Consensus 266 n-~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~-~~Lt~~E~akL~kSa~tl~~~q~ 328 (332)
T KOG1495|consen 266 N-LRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVK-QKLTDEEVAKLKKSAKTLLEAQK 328 (332)
T ss_pred C-cCceeeeeeccccccCCCCceEEecceeecCCchhhhhc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999999889999999986 999999997 99999999999999999977554
No 12
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=3e-69 Score=503.27 Aligned_cols=299 Identities=68% Similarity=1.035 Sum_probs=264.0
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+.+.+++++++++|+|+|+++++++++|++|||+|++++....+...++++++++|||+||+|||.+++++++|.+++.
T Consensus 19 l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~ 98 (324)
T TIGR01758 19 IARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLS 98 (324)
T ss_pred HHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHH
Confidence 56778888888889999999876677999999999999665555555556799999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeeeEE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 161 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV 161 (309)
.|++|++++++.|++++.|++++|++|||+|+|||+++++++++|+++||+||.|||+|||++||++++++|++|++++|
T Consensus 99 ~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V 178 (324)
T TIGR01758 99 KNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVII 178 (324)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEE
Confidence 99999999999999995369999999999999999999995456666689999999999999999999999999987557
Q ss_pred EeecCCceeeecCCceeecCCC-C---cchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHh
Q 021646 162 WGNHSSTQYPDVNHATVTTSKG-E---KPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 237 (309)
Q Consensus 162 ~GehG~s~vp~~S~~~v~~~~~-~---~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~ 237 (309)
|||||++|||+||+++| + | +|+.++++++.|..+++.+++++++++|++.||.++.+++|.++++++++++.
T Consensus 179 ~GeHG~s~v~~~S~~~v----~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ia~~~~~i~~ai~~ 254 (324)
T TIGR01758 179 WGNHSSTQYPDVNHATV----TKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALSAAKAAVDQMHDWVL 254 (324)
T ss_pred EECCCCCccccccccee----cCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 8 8 99999887655656789999999999999988766667888899998886654
Q ss_pred CCCCceEEEeeeecCCC-CCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021646 238 GTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAY 305 (309)
Q Consensus 238 ~~~~~~v~~~sv~~~g~-ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~ 305 (309)
+.++++++|+|++++|+ ||+|+|+|||+||++ ++|++.+.+ ++|+++|+++|++|++.|+++++.+.
T Consensus 255 ~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~e-l~L~~~E~~~l~~s~~~lk~~~~~~~ 323 (324)
T TIGR01758 255 GTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEG-LCVDDSSRKKLALTAKELEEERDEAL 323 (324)
T ss_pred CCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 33489999999999999 999889999999987 555555554 99999999999999999999998764
No 13
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.1e-69 Score=498.33 Aligned_cols=274 Identities=20% Similarity=0.306 Sum_probs=249.1
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCC-cceeecCChhhhcCCCcEEEEeCCCCCCCCCC--HHHHHHHhHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNIAVMVGGFPRKEGME--RKDVMSKNVSIYKAQ 90 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~-~~~~~~~~~~~~l~~aDiVVitag~~~~~~~s--r~~~~~~N~~i~~~i 90 (309)
.+|+|+|++ +++++|++|||+|+..+.. .++.+..++|++++||||||||||.+++||++ |+|+++.|++|++++
T Consensus 25 ~elvL~Di~--~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i 102 (307)
T cd05290 25 SEIVLIDVN--EGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREI 102 (307)
T ss_pred CEEEEEeCC--cchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 389999997 6799999999999875543 35666677899999999999999999999999 699999999999999
Q ss_pred HHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCce
Q 021646 91 ASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 169 (309)
Q Consensus 91 ~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~ 169 (309)
++++++++ |+++++++|||||+|||+++++ +|||++| ||+||.|||+||++++|++++++|++|++| ||||||++|
T Consensus 103 ~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~-sg~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGds~ 179 (307)
T cd05290 103 MGNITKVT-KEAVIILITNPLDIAVYIAATE-FDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGSHA 179 (307)
T ss_pred HHHHHHhC-CCeEEEEecCcHHHHHHHHHHH-hCcChhheecccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCCce
Confidence 99999999 6999999999999999999999 6999998 799999999999999999999999999999 599999999
Q ss_pred eeecCCceeecCCCCcchhhhhcc---cccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEE
Q 021646 170 YPDVNHATVTTSKGEKPVREAVAD---DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVS 246 (309)
Q Consensus 170 vp~~S~~~v~~~~~~~pl~~~~~~---~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~ 246 (309)
||+||+++| +|.|+.+++.. +.+..+++.++++++|++|++.||+|+|. +|.++++++.+ |+.+ +++++|
T Consensus 180 vp~wS~~~v----~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~-ia~a~~~ii~a-il~d-~~~v~~ 252 (307)
T cd05290 180 FPVWSLVNI----AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAG-IAKSASRLIKA-ILLD-ERSILP 252 (307)
T ss_pred EEeeeeeEE----CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeehHH-HHHHHHHHHHH-HHhC-CCeEEE
Confidence 999999999 99999998742 22335689999999999999999998875 57789998875 5565 899999
Q ss_pred eeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 021646 247 MGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 301 (309)
Q Consensus 247 ~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i 301 (309)
+|++.+|+||. +++|+|+|+++ ++|++++++ ++||++|+++|++|++.|++.+
T Consensus 253 vsv~~~G~yg~-~~v~~svP~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 253 VCTLLSGEYGL-SDVALSLPTVIGAKGIERVLE-IPLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred EEEeeCCccCC-CCEEEEEEEEEeCCCceEecC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999994 89999999986 999999998 9999999999999999998764
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=4.5e-68 Score=490.85 Aligned_cols=271 Identities=23% Similarity=0.341 Sum_probs=249.0
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 94 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i 94 (309)
+|+|+|++ +++++|++|||+|++.+..+++++..++|++++||||||||+|.|++|||+|+|+++.|++|++++++.|
T Consensus 23 el~L~Di~--~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i 100 (299)
T TIGR01771 23 EIVLIDIN--KDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEV 100 (299)
T ss_pred EEEEEeCC--CChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999997 6799999999999997776667777788999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeeec
Q 021646 95 EKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173 (309)
Q Consensus 95 ~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~~ 173 (309)
++++ |++++|++|||+|+||++++++ +|+|++| ||+||.|||+||++++|++++++|++|+++ ||||||++|||+|
T Consensus 101 ~~~~-p~~~vivvsNP~d~~t~~~~~~-sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~-v~GeHG~s~vp~~ 177 (299)
T TIGR01771 101 VKSG-FDGIFLVATNPVDILTYVAWKL-SGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAY-IIGEHGDSEVPVW 177 (299)
T ss_pred HHhC-CCeEEEEeCCHHHHHHHHHHHH-hCCCHHHEEeccchHHHHHHHHHHHHHhCcCcCeEEEE-EEecCCCceeece
Confidence 9998 6999999999999999999999 6999998 699999999999999999999999999999 5999999999999
Q ss_pred CCceeecCCCCcchhhhhcc----cccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeee
Q 021646 174 NHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGV 249 (309)
Q Consensus 174 S~~~v~~~~~~~pl~~~~~~----~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv 249 (309)
|+++| +|+|+.+++.+ ..+..+++.++++++|++|++.||+|+|. +|+++++++++ |+.+ +++++|+|+
T Consensus 178 S~~~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a~a~~~~i~a-il~d-~~~v~~~s~ 250 (299)
T TIGR01771 178 SSATI----GGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IGMAVARIVEA-ILHD-ENRVLPVSA 250 (299)
T ss_pred eeeEE----CCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HHHHHHHHHHH-HHcC-CCcEEEEEE
Confidence 99999 99999988754 12234689999999999999999988865 57789998875 5555 899999999
Q ss_pred ecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 021646 250 YSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAE 299 (309)
Q Consensus 250 ~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~ 299 (309)
+++|+||+ +|+|||+|+++ ++|++++++ ++||++|+++|++|++.|++
T Consensus 251 ~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 251 YLDGEYGI-KDVYIGVPAVLGRNGVEEIIE-LPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred EecccCCC-CCEEEEEEEEEeCCeeEEEcc-CCCCHHHHHHHHHHHHHHhC
Confidence 99999998 79999999986 999999998 99999999999999999873
No 15
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.5e-68 Score=495.10 Aligned_cols=298 Identities=69% Similarity=1.050 Sum_probs=267.6
Q ss_pred cccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHH
Q 021646 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 81 (309)
Q Consensus 2 ~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~ 81 (309)
|+.+.+++.++..+|+|+|++++.++++|+++|+.|+++++..++....+.+++++|||+||+|||.+++++++|.+++.
T Consensus 22 L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~ 101 (325)
T cd01336 22 IAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLK 101 (325)
T ss_pred HHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHH
Confidence 44556666667779999999765677999999999998665556666666689999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeeeEE
Q 021646 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 161 (309)
Q Consensus 82 ~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV 161 (309)
.|++|++++++.|+++++|++++|++|||+|+|||++++.++++|+++||+||.|||+|||+++|++++++|++|++++|
T Consensus 102 ~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V 181 (325)
T cd01336 102 ANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVII 181 (325)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHHHHHHHHHHhCcChhhceEeEE
Confidence 99999999999999998679999999999999999999997788988899999999999999999999999999998878
Q ss_pred EeecCCceeeecCCceeecCCC----CcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHh
Q 021646 162 WGNHSSTQYPDVNHATVTTSKG----EKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 237 (309)
Q Consensus 162 ~GehG~s~vp~~S~~~v~~~~~----~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~ 237 (309)
|||||++|||+||+++| + |+|+.+++.++.|..+++.+++++++++|++.|+.++++++|.++++++++++.
T Consensus 182 ~GeHG~s~~~~~S~~~v----~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~g~t~~~~a~~~~~i~~ail~ 257 (325)
T cd01336 182 WGNHSSTQYPDVNHATV----ELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSSAMSAAKAICDHVHDWWF 257 (325)
T ss_pred EEcCCCCeeecccccee----ecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccccchHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7 999999987766666899999999999999975545556778899999886665
Q ss_pred CCCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 238 GTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 238 ~~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
+.++++++|+|++++|+||+|+++|||+||++ ++|++++++ ++|+++|+++|++|++.|+++++.+
T Consensus 258 ~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~s~~~l~~e~~~~ 324 (325)
T cd01336 258 GTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQG-LSIDDFSREKIDATAKELVEEKETA 324 (325)
T ss_pred CCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 42368999999999999999889999999986 999999997 9999999999999999999999875
No 16
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=4.5e-65 Score=478.47 Aligned_cols=279 Identities=21% Similarity=0.313 Sum_probs=249.6
Q ss_pred CCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHH
Q 021646 11 DQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKA 89 (309)
Q Consensus 11 ~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~ 89 (309)
+...+|+|+|++ +++++|++|||+|++.+..+ ..+. .++|++++||||||||||.+++||++|.|++..|++|+++
T Consensus 60 ~l~~el~LiDi~--~~~~~g~a~DL~~~~~~~~~-~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~ 136 (350)
T PLN02602 60 DLADELALVDVN--PDKLRGEMLDLQHAAAFLPR-TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRK 136 (350)
T ss_pred CCCCEEEEEeCC--CchhhHHHHHHHhhhhcCCC-CEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHH
Confidence 334489999997 67999999999999854433 4554 3578999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCc
Q 021646 90 QASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSST 168 (309)
Q Consensus 90 i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s 168 (309)
+++.|+++| |+++++++|||+|+|||+++++ +|||++| ||+||.||++||++++|+++++++++|++++ |||||++
T Consensus 137 i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~-sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~V-iGeHGds 213 (350)
T PLN02602 137 IIPELAKYS-PDTILLIVSNPVDVLTYVAWKL-SGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYI-VGEHGDS 213 (350)
T ss_pred HHHHHHHHC-CCeEEEEecCchHHHHHHHHHH-hCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeE-EecCCCc
Confidence 999999999 6999999999999999999999 5899999 5999999999999999999999999999995 8999999
Q ss_pred eeeecCCceeecCCCCcchhhhhccc------ccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCc
Q 021646 169 QYPDVNHATVTTSKGEKPVREAVADD------NWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKG 242 (309)
Q Consensus 169 ~vp~~S~~~v~~~~~~~pl~~~~~~~------~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~ 242 (309)
|||+||++++ +|+|+.+++.+. +| .+++.+++++++++|++.||+|+| ++|.++++++. +++.+ ++
T Consensus 214 ~vp~wS~~~i----~G~pl~~~~~~~~~~~~~~~-~~~i~~~v~~~g~eIi~~KG~t~~-gia~a~a~ii~-ail~d-~~ 285 (350)
T PLN02602 214 SVALWSSVSV----GGVPVLSFLEKQQIAYEKET-LEEIHRAVVDSAYEVIKLKGYTSW-AIGYSVASLVR-SLLRD-QR 285 (350)
T ss_pred eEeeeeeeeE----CCEEHHHHhhccCCccCHHH-HHHHHHHHHHHHHHHHhcCCccHH-HHHHHHHHHHH-HHHhc-CC
Confidence 9999999999 999999986541 22 357999999999999999998885 46778888876 45565 89
Q ss_pred eEEEeeeecCCCCCCC-CceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 243 TWVSMGVYSDGSYGIP-EGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 243 ~v~~~sv~~~g~ygi~-~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
+++|+|++++|+||++ +++|+|+||++ ++|++++++ ++|+++|+++|++|++.|++.++..
T Consensus 286 ~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~-l~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 286 RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVN-VHLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEec-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999994 79999999986 999999997 9999999999999999999877653
No 17
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.5e-65 Score=471.39 Aligned_cols=279 Identities=24% Similarity=0.315 Sum_probs=249.7
Q ss_pred CCCeEEEEEEecCCccchhhHHHHHHhhccCCCC-cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHH
Q 021646 10 PDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYK 88 (309)
Q Consensus 10 ~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~-~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~ 88 (309)
.+...+|+|+|++ +++++|++|||+|++.+.. ..+.. +++|++++||||||||+|.+++|||+|++++..|++|++
T Consensus 25 ~~~~~el~LiD~~--~~~~~g~a~Dl~~~~~~~~~~~v~~-~~dy~~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~ 101 (312)
T cd05293 25 KGLADELVLVDVV--EDKLKGEAMDLQHGSAFLKNPKIEA-DKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFK 101 (312)
T ss_pred cCCCCEEEEEeCC--ccHHHHHHHHHHHhhccCCCCEEEE-CCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3556699999997 5799999999999984433 23332 467899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCC
Q 021646 89 AQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS 167 (309)
Q Consensus 89 ~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~ 167 (309)
++++.|++++ |+++++++|||+|+|||+++++ +|+|++| ||+||.||++||++++|+++++++++|++++ |||||+
T Consensus 102 ~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~-sg~p~~~viG~gt~Ld~~R~~~~la~~l~v~~~~v~~~v-~GeHG~ 178 (312)
T cd05293 102 GIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKL-SGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWI-IGEHGD 178 (312)
T ss_pred HHHHHHHHhC-CCcEEEEccChHHHHHHHHHHH-hCCCHHHEEecCchHHHHHHHHHHHHHhCCChhhEEEEE-eecCCC
Confidence 9999999999 6999999999999999999999 6999999 7999999999999999999999999999996 899999
Q ss_pred ceeeecCCceeecCCCCcchhhhhcc-----cccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCc
Q 021646 168 TQYPDVNHATVTTSKGEKPVREAVAD-----DNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKG 242 (309)
Q Consensus 168 s~vp~~S~~~v~~~~~~~pl~~~~~~-----~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~ 242 (309)
+|||+||++++ +|+|+.+++.. ++...+++.++++++|++|++.||+|+|. +|+++++++.+ |+++ ++
T Consensus 179 s~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~-~a~a~~~ii~a-il~d-~~ 251 (312)
T cd05293 179 SSVPVWSGVNV----AGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWA-IGLSVADLVDA-ILRN-TG 251 (312)
T ss_pred CccccceeceE----CCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHH-HHcC-CC
Confidence 99999999999 99999998632 11113689999999999999999988865 57889998875 5555 89
Q ss_pred eEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021646 243 TWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 243 ~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
+++|+|++++|+||+|.++|||+||++ ++|++++++ ++|+++|+++|++|++.|++.++
T Consensus 252 ~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~-l~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 252 RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIK-QPLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999889999999986 999999997 99999999999999999998765
No 18
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-64 Score=469.16 Aligned_cols=276 Identities=25% Similarity=0.361 Sum_probs=251.5
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
.+|+|+|++ +++++|++|||+|+..+. +++.+.+++|++++||||||||+|.|++||++|.+++..|++|++++++.
T Consensus 32 ~el~L~D~~--~~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~ 108 (315)
T PRK00066 32 DELVIIDIN--KEKAEGDAMDLSHAVPFT-SPTKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGE 108 (315)
T ss_pred CEEEEEeCC--CchhHHHHHHHHhhcccc-CCeEEEeCCHHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 489999997 678999999999998443 45677778899999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
+++++ |+++++++|||+|+||++++++ +|+|++| ||+||.|||+||++++|++++++|++|++++ |||||++++|+
T Consensus 109 i~~~~-~~~~vivvsNP~d~~~~~~~k~-sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v-iGeHG~s~v~~ 185 (315)
T PRK00066 109 VMASG-FDGIFLVASNPVDILTYATWKL-SGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYI-IGEHGDTEFPV 185 (315)
T ss_pred HHHhC-CCeEEEEccCcHHHHHHHHHHH-hCCCHHHEeecCchHHHHHHHHHHHHHhCCCcccEEEEE-EecCCCcceec
Confidence 99999 6999999999999999999999 6999999 5999999999999999999999999999995 89999999999
Q ss_pred cCCceeecCCCCcchhhhhcccccch----hHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEee
Q 021646 173 VNHATVTTSKGEKPVREAVADDNWLN----TEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMG 248 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~~~~~----~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~s 248 (309)
||++++ +|+|+.+++.+..|.. +++.+++++++++|++.||+|+| ++|+++++++.+ +.++ +++++|+|
T Consensus 186 ~S~~~v----~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~-~~a~~~~~i~~a-il~~-~~~v~~~s 258 (315)
T PRK00066 186 WSHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGATYY-GIAMALARITKA-ILNN-ENAVLPVS 258 (315)
T ss_pred ceeceE----CCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCeehH-HHHHHHHHHHHH-HHcC-CCeEEEEE
Confidence 999999 9999999876544432 47999999999999999998886 467788898875 5565 89999999
Q ss_pred eecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 249 VYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 249 v~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
++++|+||. +++|||+||++ ++|++++++ ++||++|+++|++|++.|++.++..
T Consensus 259 v~~~g~yg~-~~v~~S~Pv~ig~~Gv~~i~~-l~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 259 AYLEGQYGE-EDVYIGVPAVVNRNGIREIVE-LPLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred EEeccccCC-CCEEEEeEEEEeCCcEEEEcC-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999995 89999999986 999999997 9999999999999999999988753
No 19
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=9.8e-64 Score=463.09 Aligned_cols=273 Identities=25% Similarity=0.369 Sum_probs=249.4
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 92 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~ 92 (309)
.+|+|+|++ ++++.|+++||+|+..+.. ...+. +++++++++||+||+|+|.|++||++|.+++..|+++++++++
T Consensus 24 ~el~l~D~~--~~~~~g~~~DL~~~~~~~~-~~~i~~~~~~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~ 100 (300)
T cd00300 24 SELVLVDVN--EEKAKGDALDLSHASAFLA-TGTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVIT 100 (300)
T ss_pred CEEEEEeCC--ccHHHHHHHhHHHhccccC-CCeEEECCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 489999997 6799999999999987642 33332 3558999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceee
Q 021646 93 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171 (309)
Q Consensus 93 ~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp 171 (309)
.|+++| |++++|++|||+|+||++++++ +|+|++| ||.||.|||+||++++|+++++++++|++++ +||||+++||
T Consensus 101 ~i~~~~-p~~~viv~sNP~d~~~~~~~~~-sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~v-iGeHg~s~v~ 177 (300)
T cd00300 101 NLKKYG-PDAIILVVSNPVDILTYVAQKL-SGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYV-LGEHGDSQVV 177 (300)
T ss_pred HHHHhC-CCeEEEEccChHHHHHHHHHHH-hCcCHHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEE-EeccCCceee
Confidence 999999 7999999999999999999999 6999999 6999999999999999999999999999995 7999999999
Q ss_pred ecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeeec
Q 021646 172 DVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYS 251 (309)
Q Consensus 172 ~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~~ 251 (309)
+||+++| +|+|+.+++++++|..+++.+++++++++|++.||+|+| ++|+++++++++++ ++ +++++|+|+++
T Consensus 178 ~~S~~~v----~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~-~~a~a~~~~~~ai~-~~-~~~v~~~s~~~ 250 (300)
T cd00300 178 AWSTATV----GGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNY-GIATAIADIVKSIL-LD-ERRVLPVSAVQ 250 (300)
T ss_pred eeeeeEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchH-HHHHHHHHHHHHHH-cC-CCeEEEEEEEe
Confidence 9999999 999999998766676789999999999999999998886 57889999887654 55 89999999999
Q ss_pred CCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 021646 252 DGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 301 (309)
Q Consensus 252 ~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i 301 (309)
+|+||. +++|||+||++ ++|++++++ ++|+++|+++|++|++.|++.+
T Consensus 251 ~g~yg~-~~~~~s~Pv~ig~~Gi~~i~~-l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 251 EGQYGI-EDVALSVPAVVGREGVVRILE-IPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred cCccCC-CCEEEEEEEEEeCCCeEEEec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 999995 89999999986 999999997 9999999999999999998765
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.1e-63 Score=464.21 Aligned_cols=275 Identities=24% Similarity=0.387 Sum_probs=250.2
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
.+|+|+|++ +++++|+++||+|+..+....+.+..++++++++||+||+|+|.|++|||+|.++++.|++|++++++.
T Consensus 26 ~ei~l~D~~--~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~ 103 (306)
T cd05291 26 DELVLIDIN--EEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPK 103 (306)
T ss_pred CEEEEEeCC--cchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999997 678999999999998655545555567788999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
|++++ |++++|++|||+|+||++++++ +|||++| ||+||.|||+||+++||+++++++++|+++ ||||||++++|+
T Consensus 104 i~~~~-~~~~vivvsNP~d~~~~~~~~~-~g~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~-V~G~Hg~s~~~~ 180 (306)
T cd05291 104 IKASG-FDGIFLVASNPVDVITYVVQKL-SGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAY-VLGEHGDSQFVA 180 (306)
T ss_pred HHHhC-CCeEEEEecChHHHHHHHHHHH-hCcCHHHEeeccchHHHHHHHHHHHHHHCCCcccceEE-EEecCCCceeec
Confidence 99999 6999999999999999999999 7999999 799999999999999999999999999998 599999999999
Q ss_pred cCCceeecCCCCcchhhhhcccccc---hhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeee
Q 021646 173 VNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGV 249 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~~~~---~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv 249 (309)
||++++ +|+|+.+++.+..|. .+++.++++++|++|++.||+|+|. +|.++++++++ |+.+ +++++|+|+
T Consensus 181 ~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~-~a~a~~~~~~a-il~~-~~~v~~~s~ 253 (306)
T cd05291 181 WSTVTV----GGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG-IATALARIVKA-ILND-ENAILPVSA 253 (306)
T ss_pred ceeeEE----cCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHH-HHcC-CCEEEEEEE
Confidence 999999 999999987654453 4679999999999999999988865 56788998875 4555 899999999
Q ss_pred ecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021646 250 YSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 250 ~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
+++|+||. +|+|||+||++ ++|++++++ ++|+++|+++|++|+++|++.++
T Consensus 254 ~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 254 YLDGEYGE-KDVYIGVPAIIGRNGVEEVIE-LDLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred EeccccCC-CCEEEEEEEEEeCCCEEEEEC-CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999995 89999999986 999999997 99999999999999999998765
No 21
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.7e-62 Score=421.87 Aligned_cols=309 Identities=73% Similarity=1.147 Sum_probs=300.6
Q ss_pred CcccccccCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80 (309)
Q Consensus 1 ~~~~g~~~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~ 80 (309)
||++|.+||+|||+.|+|+|+.+..+.++|.+|+|+|+++|+.+.+...++..++++|.|+.|+..+.||++||.|.|++
T Consensus 23 ~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~~ailvGa~PR~eGMERkDll 102 (332)
T KOG1496|consen 23 MIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVDVAILVGAMPRREGMERKDLL 102 (332)
T ss_pred HHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCcEEEEeccccCcccchhhhHH
Confidence 68999999999999999999998889999999999999999999999888889999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhCCCCCCeeeeE
Q 021646 81 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 160 (309)
Q Consensus 81 ~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v~~~~v~~~v 160 (309)
..|.+|++.-+..+.+|+.|+++|+|++||+|..+.++.++++.+|.++|...|.||..|+..+||.++++..++|.+++
T Consensus 103 ~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNvi 182 (332)
T KOG1496|consen 103 SANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVI 182 (332)
T ss_pred hhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchhhHHHHHHHhhCCchhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCC
Q 021646 161 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240 (309)
Q Consensus 161 V~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~ 240 (309)
|||+|+.+|+|+.-+++|+.+.+.+|+.+.+.++.|++.++.+.|+++|..+++.++.++.+|.|.++|+.|++|+.+.|
T Consensus 183 IWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~SSA~SaA~aacDhi~dw~~gTp 262 (332)
T KOG1496|consen 183 IWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLSSAMSAAKAACDHIRDWWFGTP 262 (332)
T ss_pred EecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhhhhhhhHHHhHhhhhhheecCCC
Confidence 99999999999999999987667899999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeeecCCCCCCCCceEEEEeEEecCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 021646 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 241 ~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~~ 309 (309)
++.+++++|+++|.||+|.|..||+||.+++|-|+++++++++++-++++..++.+|.++.+.+.++|+
T Consensus 263 eG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVqgl~iddf~r~km~~t~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 263 EGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQGLPIDDFSREKMDLTAKELKEEKDLAYSCLS 331 (332)
T ss_pred CccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEcCcchhHHHHHhhhhhHHHHHHhHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 22
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.6e-60 Score=443.17 Aligned_cols=274 Identities=23% Similarity=0.328 Sum_probs=247.2
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
.+++|+|++ +++++|+++||+|+.... ....+.+++++++++||+||+|+|.+++++++|.+++..|+++++++++.
T Consensus 26 ~ev~l~D~~--~~~~~g~a~dl~~~~~~~-~~~~i~~~d~~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~ 102 (308)
T cd05292 26 SEIVLVDIN--KAKAEGEAMDLAHGTPFV-KPVRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQ 102 (308)
T ss_pred CEEEEEECC--chhhhhHHHHHHcccccc-CCeEEeeCCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999997 568999999999987433 33455567889999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
|++++ |+++++++|||+|+||++++++ +|||++| ||+||.|||+||++++|+++++++++|++++ |||||+++||+
T Consensus 103 l~~~~-~~giiiv~tNP~d~~~~~~~~~-sg~p~~~viG~gt~LDs~R~~~~la~~~~v~~~~v~~~v-iGeHg~~~~~~ 179 (308)
T cd05292 103 ILKYA-PDAILLVVTNPVDVLTYVAYKL-SGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYI-IGEHGDSEVAV 179 (308)
T ss_pred HHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHeecccchhhHHHHHHHHHHHhCCCccceecee-eccCCCcEEec
Confidence 99999 6999999999999999999999 6999999 7999999999999999999999999999995 89999999999
Q ss_pred cCCceeecCCCCcchhhhhccc--c---cchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEe
Q 021646 173 VNHATVTTSKGEKPVREAVADD--N---WLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSM 247 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~--~---~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~ 247 (309)
||+++| +|+|+.+++.+. . +..+++.+++++++++|++.||+|+| ++|+++++++++ ++.+ +++++|+
T Consensus 180 ~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~-~~a~a~~~i~~a-il~~-~~~v~~~ 252 (308)
T cd05292 180 WSSANI----GGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYY-AIGLALARIVEA-ILRD-ENSVLTV 252 (308)
T ss_pred ceeeeE----CCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHH-HHHHHHHHHHHH-HHcC-CCcEEEE
Confidence 999999 999999886542 1 22457999999999999999998885 457789998875 5565 8999999
Q ss_pred eeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021646 248 GVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 248 sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
|++++|+||+ +++|||+||++ ++|++++++ ++||++|+++|++|++.|++.++
T Consensus 253 s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~s~~~i~~~~~ 306 (308)
T cd05292 253 SSLLDGQYGI-KDVALSLPCIVGRSGVERVLP-PPLSEEEEEALRASAEVLKEAIE 306 (308)
T ss_pred EEEEcccCCC-CCEEEEEEEEEeCCceEEecC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 79999999986 999999998 99999999999999999998876
No 23
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=1.6e-60 Score=442.02 Aligned_cols=271 Identities=25% Similarity=0.391 Sum_probs=243.2
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCC--cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 92 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~--~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~ 92 (309)
+++|+|++ +++..|+++|+.|...... .+++. +++++++++||+||||+|.|+++|++|.+++..|+++++++++
T Consensus 27 ~VvlvDi~--~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~ 103 (305)
T TIGR01763 27 DLVLLDVV--EGIPQGKALDMYEASPVGGFDTKVTG-TNNYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTG 103 (305)
T ss_pred eEEEEeCC--CChhHHHHHhhhhhhhccCCCcEEEe-cCCHHHhCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 58999996 5688999999999764332 23333 4567889999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceee
Q 021646 93 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 171 (309)
Q Consensus 93 ~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp 171 (309)
+|.+++ |++++|++|||+|+||++++++ +|+|++| ||+||.|||+||++++|++++++|++|++++ |||||++|||
T Consensus 104 ~I~~~~-p~~~iIv~tNP~di~t~~~~~~-sg~~~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v-~GeHg~s~~~ 180 (305)
T TIGR01763 104 RIMEHS-PNPIIVVVSNPLDAMTYVAWQK-SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACV-LGGHGDAMVP 180 (305)
T ss_pred HHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeE-EecCCCcEEe
Confidence 999998 6999999999999999999999 6999998 6999999999999999999999999999995 8999999999
Q ss_pred ecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhc--CCcChHHHHHHHHHHHHHHHHhCCCCceEEEeee
Q 021646 172 DVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGV 249 (309)
Q Consensus 172 ~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~--kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv 249 (309)
+||++++ +|+|+.+++.++. .+++.+++++++++|++. ||+|. +++|+++++++. +++++ +++++|+|+
T Consensus 181 ~wS~~~i----~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~kg~t~-~~~a~~~~~i~~-ai~~~-~~~v~~~s~ 251 (305)
T TIGR01763 181 LVRYSTV----AGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQGSAY-YAPAASVVEMVE-AILKD-RKRVLPCAA 251 (305)
T ss_pred eeeeeEE----CCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHH-HHhCC-CCeEEEEEE
Confidence 9999999 9999999875543 368999999999999997 55666 456778888765 67776 899999999
Q ss_pred ecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021646 250 YSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 250 ~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
+++|+||+ +++|+|+|+++ ++|++++++ ++|+++|+++|++|++.|++.++
T Consensus 252 ~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~s~~~i~~~~~ 303 (305)
T TIGR01763 252 YLDGQYGI-DGIYVGVPVILGKNGVEHIYE-LKLDQSELALLNKSAKIVDENCK 303 (305)
T ss_pred EecccCCC-CceEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999998 79999999986 999999998 99999999999999999998765
No 24
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-60 Score=441.71 Aligned_cols=279 Identities=24% Similarity=0.334 Sum_probs=248.8
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
+|+|+|++ +++++|+++|++|+.........+. ++++++++|||+||+|+|.+++++++|.|++..|+++++++++.
T Consensus 31 ~l~L~Di~--~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~ 108 (319)
T PTZ00117 31 DVVLYDVI--KGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAES 108 (319)
T ss_pred eEEEEECC--CccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999997 5678999999999975443333333 35788999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
|.++| |+++++++|||+|+||++++++ +++|++| ||+||.|||+||+++||++++++|++|++++ +||||+++||+
T Consensus 109 i~~~~-p~a~vivvsNP~di~t~~~~~~-s~~p~~rviG~gt~lds~R~~~~la~~l~v~~~~v~~~v-iGeHg~~~v~~ 185 (319)
T PTZ00117 109 VKKYC-PNAFVICVTNPLDCMVKVFQEK-SGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVV-IGGHGDLMVPL 185 (319)
T ss_pred HHHHC-CCeEEEEecChHHHHHHHHHHh-hCCCcccEEEecchHHHHHHHHHHHHHhCCCcccceEEE-eecCCCcEEec
Confidence 99999 7999999999999999999999 6999888 6999999999999999999999999999886 79999999999
Q ss_pred cCCceeecCCCCcchhhhhcccccc---hhHHHHHHHhhHHHHHhc--CCcChHHHHHHHHHHHHHHHHhCCCCceEEEe
Q 021646 173 VNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTPKGTWVSM 247 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~~~~---~~el~~~v~~~~~~i~~~--kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~ 247 (309)
||++++ +|+|+.+++.++.|. .+++.+++++++++|++. ||++. +++|+++++++.+ ++++ +++++|+
T Consensus 186 ~s~~~v----~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~-~~~a~a~~~~~~a-il~~-~~~v~~~ 258 (319)
T PTZ00117 186 PRYCTV----NGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAF-FAPAAAIVAMIEA-YLKD-EKRVLVC 258 (319)
T ss_pred eeeceE----CCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHH-HhcC-CCeEEEE
Confidence 999999 999999987654443 357999999999999996 66555 5778899998875 4455 8999999
Q ss_pred eeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 021646 248 GVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSC 307 (309)
Q Consensus 248 sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~ 307 (309)
|++++|+||+ +|+|||+||++ ++|++++++ ++|+++|+++|++|++.|++.++....+
T Consensus 259 s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~l~~~E~~~l~~s~~~l~~~~~~~~~~ 317 (319)
T PTZ00117 259 SVYLNGQYNC-KNLFVGVPVVIGGKGIEKVIE-LELNAEEKELFDKSIESIQELTQKAKAL 317 (319)
T ss_pred EEEeccccCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 59999999986 999999998 9999999999999999999999876654
No 25
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=2.1e-60 Score=440.82 Aligned_cols=272 Identities=23% Similarity=0.307 Sum_probs=234.0
Q ss_pred CeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecC-C--hhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHH
Q 021646 12 QPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-D--VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYK 88 (309)
Q Consensus 12 ~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~-~--~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~ 88 (309)
.-.+|+|+|+++ +.|++|||+|+.. ...+...+ + .|++++|||+||||+|.+++||++|+++++.|++|++
T Consensus 24 ~~~elvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~ 97 (312)
T TIGR01772 24 YVSELSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVK 97 (312)
T ss_pred CCcEEEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHH
Confidence 345899999972 7899999999773 22344322 2 3899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEecCchhH----HHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEe
Q 021646 89 AQASALEKHAAPNCKVLVVANPANT----NALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 163 (309)
Q Consensus 89 ~i~~~i~~~~~p~~~vivvsnPvd~----~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~G 163 (309)
++++.|++++ |+++++++|||+|+ ||+++++. +|||++| ||+|+ |||+|||++||++++++|++|++++ ||
T Consensus 98 ~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~-sg~p~~rViG~g~-LDsaR~r~~la~~l~v~~~~v~~~V-iG 173 (312)
T TIGR01772 98 DLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKK-GVYDPNKLFGVTT-LDIVRANTFVAELKGKDPMEVNVPV-IG 173 (312)
T ss_pred HHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHh-cCCChHHEEeeec-chHHHHHHHHHHHhCCCHHHeEEEE-EE
Confidence 9999999998 79999999999998 99999999 7999999 57775 9999999999999999999999995 99
Q ss_pred ecCC-ceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhc---CCcChHHHHHHHHHHHHHHHHh--
Q 021646 164 NHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA---RKLSSALSAASSACDHIRDWVL-- 237 (309)
Q Consensus 164 ehG~-s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~---kg~t~~~~~a~a~~~~i~~~i~-- 237 (309)
|||+ +|||+||++++ . |+ +.++. .+++.++++++|++|++. ||+|. +++|.++++++.+.+.
T Consensus 174 eHg~~s~vp~~S~~~~----~--~~---~~~~~--~~~i~~~v~~~g~~Ii~~k~gkg~t~-~~ia~a~~~iv~ail~~~ 241 (312)
T TIGR01772 174 GHSGETIIPLISQCPG----K--VL---FTEDQ--LEALIHRIQNAGTEVVKAKAGAGSAT-LSMAFAGARFVLSLVRGL 241 (312)
T ss_pred ecCCCccccccccccc----c--CC---CCHHH--HHHHHHHHHHHHHHHHhCccCCCChh-HHHHHHHHHHHHHHHHhh
Confidence 9997 99999999987 3 22 22222 368999999999999997 45555 5678888887765442
Q ss_pred CCCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 021646 238 GTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGL-KVDEFSRAKMDATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 238 ~~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~-~L~~~E~~~l~~s~~~i~~~i~~~~~~~~ 309 (309)
.+ +++++|+ ++++|+||. +++|||+|+++ ++||+++++ + +||++|+++|++|++.|++.++++++|++
T Consensus 242 ~d-~~~v~~~-s~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 242 KG-EEGVVEC-AYVESDGVT-EATFFATPLLLGKNGVEKRLG-IGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred CC-CccEEEE-EEEccCCCc-CceEEEEEEEEcCCeeEEEEc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 7899995 489999997 89999999986 999999998 9 89999999999999999999999999874
No 26
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.9e-59 Score=435.81 Aligned_cols=276 Identities=24% Similarity=0.372 Sum_probs=246.6
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
+|+|+|+++..++++|+++|++|..........+. +.+++++++||+||+|+|.|++++++|.+++..|+++++++++.
T Consensus 28 ~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~ 107 (309)
T cd05294 28 EINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQ 107 (309)
T ss_pred EEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999996545899999999999764433222332 23588899999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
|++++ |++++||++||+|+|||+++++ +|+|++| ||+||.|||+||+++||+++++++++|++++ +||||++|||+
T Consensus 108 i~~~~-~~~~viv~~npvd~~t~~~~~~-~g~~~~~viG~gt~LDs~R~~~~la~~l~v~~~~v~~~v-iGeHg~s~~~~ 184 (309)
T cd05294 108 IAEFA-PDTKILVVTNPVDVMTYKALKE-SGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRI-IGEHGDSMVPL 184 (309)
T ss_pred HHHHC-CCeEEEEeCCchHHHHHHHHHh-cCCCHHHEeeccchHHHHHHHHHHHHHHCcChHHeEEEE-EecCCCceEee
Confidence 99999 6999999999999999999999 6899999 7999999999999999999999999999996 79999999999
Q ss_pred cCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeeecC
Q 021646 173 VNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSD 252 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~~~ 252 (309)
||++++ +|+|+.++++.+++..+++.+++++++++|++.||+++| ++|.++++++.+ ++++ ++.++|+|++.+
T Consensus 185 ~S~~~i----~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~-~~a~~~~~ii~a-il~~-~~~v~~vsv~~~ 257 (309)
T cd05294 185 ISSTSI----GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEY-GPASAISNLVRT-IAND-ERRILTVSTYLE 257 (309)
T ss_pred eeecEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchh-hHHHHHHHHHHH-HHCC-CCeEEEEEEEEC
Confidence 999999 999999986533344578999999999999999998875 678889998875 6665 899999999999
Q ss_pred CCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 021646 253 GSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 253 g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
|+| |++ |+|+|+|+++ ++|++++++ ++|+++|+++|++|++.|++.++
T Consensus 258 g~~~~~~-~~~~svP~~ig~~Gv~~i~~-l~l~~~E~~~l~~s~~~i~~~~~ 307 (309)
T cd05294 258 GEIDGIR-DVCIGVPVKLGKNGIEEIVP-IEMDDDEREAFRKSAEIVKKYTR 307 (309)
T ss_pred CccCCCC-CeEEEeEEEEcCCccEEEeC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 998 995 9999999986 999999998 99999999999999999998765
No 27
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=7.6e-59 Score=433.31 Aligned_cols=275 Identities=21% Similarity=0.331 Sum_probs=244.6
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCC-----CHHHHHHHhHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYK 88 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~-----sr~~~~~~N~~i~~ 88 (309)
+|+|+|++ ++++.|+++|+.|..........+. ++++++++|||+||+|+|.+++|++ +|++++..|+++++
T Consensus 32 ~i~LvDi~--~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~ 109 (321)
T PTZ00082 32 DVVLFDIV--KNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMD 109 (321)
T ss_pred eEEEEeCC--CchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 59999997 5678999999999875444333444 3678999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCC
Q 021646 89 AQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS 167 (309)
Q Consensus 89 ~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~ 167 (309)
++++.|+++| |++++|++|||+|+|+++++++ +++|++| ||+||.||++||++++|+++++++++|++++ +||||+
T Consensus 110 ~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~-sg~p~~rviGlgt~lds~R~~~~la~~l~v~~~~v~~~v-iGeHg~ 186 (321)
T PTZ00082 110 EVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEH-SGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV-IGAHGD 186 (321)
T ss_pred HHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHh-cCCChhhEEEecCcccHHHHHHHHHHHhCCCcccceeeE-EecCCC
Confidence 9999999999 7999999999999999999999 7999888 6999999999999999999999999999996 799999
Q ss_pred ceeeecCCceeecCCCCcchhhhhccccc---chhHHHHHHHhhHHHHHhc--CCcChHHHHHHHHHHHHHHHHhCCCCc
Q 021646 168 TQYPDVNHATVTTSKGEKPVREAVADDNW---LNTEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTPKG 242 (309)
Q Consensus 168 s~vp~~S~~~v~~~~~~~pl~~~~~~~~~---~~~el~~~v~~~~~~i~~~--kg~t~~~~~a~a~~~~i~~~i~~~~~~ 242 (309)
++||+||++++ +|.|+.++++++.+ ..+++.+++++++++|++. ||+|. +++|.++++++++ ++.+ ++
T Consensus 187 s~v~~~S~~~i----~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t~-~~ia~a~~~i~~a-il~d-~~ 259 (321)
T PTZ00082 187 KMVPLPRYVTV----GGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLLGTGSAY-FAPAAAAIEMAEA-YLKD-KK 259 (321)
T ss_pred ceEecceeeEE----CCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCccH-HHHHHHHHHHHHH-HHcC-CC
Confidence 99999999999 99999998643211 1367999999999999996 46566 5778899998874 5565 89
Q ss_pred eEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021646 243 TWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTL 303 (309)
Q Consensus 243 ~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~ 303 (309)
+++|+|++++|+||+ +++|||+|+++ ++|++++++ ++|+++|+++|++|++.|++.++.
T Consensus 260 ~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 260 RVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIE-LDLTPEEQKKFDESIKEVKRLEAL 319 (321)
T ss_pred cEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 89999999986 999999998 999999999999999999987654
No 28
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.9e-59 Score=432.59 Aligned_cols=272 Identities=23% Similarity=0.331 Sum_probs=231.0
Q ss_pred CCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeec---CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHH
Q 021646 11 DQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIY 87 (309)
Q Consensus 11 ~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~---~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~ 87 (309)
+...+|+|+|++ +++|++|||+|+..+ ..+... ++.|++++|||+||||||.|++||++|+|+++.|++|+
T Consensus 24 ~~~~elvLiDi~----~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~ 97 (310)
T cd01337 24 PLVSELALYDIV----NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIV 97 (310)
T ss_pred CCCcEEEEEecC----ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 445699999996 789999999999732 233322 22389999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEecCchhHH----HHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEE
Q 021646 88 KAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIW 162 (309)
Q Consensus 88 ~~i~~~i~~~~~p~~~vivvsnPvd~~----t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~ 162 (309)
+++++.|++|+ |++++|++|||+|+| ||++++. +++|++| ||+| .|||+||++++|++++++|++|++++ |
T Consensus 98 ~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~-s~~p~~rviG~~-~LDs~R~~~~la~~l~v~~~~V~~~v-~ 173 (310)
T cd01337 98 RDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKA-GVYDPKRLFGVT-TLDVVRANTFVAELLGLDPAKVNVPV-I 173 (310)
T ss_pred HHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHh-cCCCHHHEEeee-chHHHHHHHHHHHHhCcCHHHEEEEE-E
Confidence 99999999998 699999999999998 8888998 7999999 5775 59999999999999999999999885 8
Q ss_pred eec-CCceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcC---CcChHHHHHHHHHHHHHHHHhC
Q 021646 163 GNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR---KLSSALSAASSACDHIRDWVLG 238 (309)
Q Consensus 163 Geh-G~s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~k---g~t~~~~~a~a~~~~i~~~i~~ 238 (309)
||| |++|||+||++++ . .++ .++. .+++.++++++|++|++.| |+|. +++|.++++++++++.+
T Consensus 174 GeHsGds~vp~~S~~~~----~----~~~-~~~~--~~~i~~~v~~~g~~Ii~~k~gkg~t~-~~~a~a~~~iv~aIl~~ 241 (310)
T cd01337 174 GGHSGVTILPLLSQCQP----P----FTF-DQEE--IEALTHRIQFGGDEVVKAKAGAGSAT-LSMAYAGARFANSLLRG 241 (310)
T ss_pred ecCCCCceecccccccc----c----ccC-CHHH--HHHHHHHHHHHHHHHHhCccCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 999 8999999999977 2 112 2222 3689999999999999985 6555 56788999998865532
Q ss_pred -CCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 239 -TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGL-KVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 239 -~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~-~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
.+++.+++++ +.+|+ |. +++|||+|+++ ++|++++++ + +|+++|+++|++|++.|++.++++.+|+
T Consensus 242 ~~~~~~~~~~s-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~-l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 242 LKGEKGVIECA-YVESD-VT-EAPFFATPVELGKNGVEKNLG-LGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred cCCCcceEEEE-EEecc-CC-CceEEEEEEEEeCCeEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 1255777777 67776 75 79999999986 999999998 9 6999999999999999999999988774
No 29
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=4e-57 Score=419.28 Aligned_cols=271 Identities=27% Similarity=0.396 Sum_probs=242.7
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
+++|+|++ +++++|+++|+.|..........+. +++++++++||+||+|+|.|++++++|.+++..|+++++++++.
T Consensus 24 eV~L~Di~--e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~ 101 (300)
T cd01339 24 DVVLLDIV--EGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAEN 101 (300)
T ss_pred EEEEEeCC--CcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 89999997 5688999999999864433333333 34588999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
|.+++ |++++|++|||+|+||++++++ +|+||+| ||+||.|||+||++++|++++++|++|++++ +||||++++|+
T Consensus 102 i~~~~-p~~~iIv~sNP~di~t~~~~~~-s~~~~~rviGlgt~lds~r~~~~la~~l~v~~~~v~~~v-~G~hg~~~~~~ 178 (300)
T cd01339 102 IKKYA-PNAIVIVVTNPLDVMTYVAYKA-SGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMV-LGGHGDTMVPL 178 (300)
T ss_pred HHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCHHHEEEecchHHHHHHHHHHHHHhCCCccceEEEE-EeCCCCcceec
Confidence 99999 6999999999999999999999 6999988 6999999999999999999999999999996 79999999999
Q ss_pred cCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcC--CcChHHHHHHHHHHHHHHHHhCCCCceEEEeeee
Q 021646 173 VNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVY 250 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~k--g~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~ 250 (309)
||++++ +|.|+.+++.+++ .+++.+++++++++|++.| |+|.| ++|.++++++. +++++ ++.++|+|++
T Consensus 179 ~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t~~-~~a~~~~~i~~-ail~~-~~~i~~~s~~ 249 (300)
T cd01339 179 PRYSTV----GGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSAYY-APAAAIAEMVE-AILKD-KKRVLPCSAY 249 (300)
T ss_pred ceecEE----CCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCchhH-HHHHHHHHHHH-HHHcC-CCcEEEEEEE
Confidence 999999 9999999876554 3689999999999999977 76665 56778888776 56665 8999999999
Q ss_pred cCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 021646 251 SDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 301 (309)
Q Consensus 251 ~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i 301 (309)
++|+||+ +++|||+||++ ++|++++++ ++||++|+++|++|++.|++.+
T Consensus 250 ~~g~yg~-~~~~~s~P~~ig~~G~~~~~~-l~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 250 LEGEYGI-KDIFVGVPVVLGKNGVEKIIE-LDLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred eccccCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999 59999999986 999999997 9999999999999999999865
No 30
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-57 Score=419.24 Aligned_cols=274 Identities=21% Similarity=0.300 Sum_probs=235.4
Q ss_pred CCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecC--Ch-hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHH
Q 021646 10 PDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT--DV-VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSI 86 (309)
Q Consensus 10 ~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~--~~-~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i 86 (309)
.+...+|+|+|++ +++|+++||+|+... ..+...+ ++ +++++|||+||+|+|.+++|+++|.+++..|+++
T Consensus 31 ~~~~~elvL~Di~----~~~g~a~Dl~~~~~~--~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i 104 (321)
T PTZ00325 31 NPHVSELSLYDIV----GAPGVAADLSHIDTP--AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPI 104 (321)
T ss_pred CCCCCEEEEEecC----CCcccccchhhcCcC--ceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Confidence 3455689999993 689999999998752 2232221 33 8999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEecCchhHHHHHHH----HHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEE
Q 021646 87 YKAQASALEKHAAPNCKVLVVANPANTNALILK----EFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVII 161 (309)
Q Consensus 87 ~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~----~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV 161 (309)
++++++.+++++ |+++++++|||+|+|+|+++ +. +++||++ ||+| +|||+||+++||++++++|++|++|+
T Consensus 105 ~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~-sg~p~~~viG~g-~LDs~R~r~~la~~l~v~~~~V~~~V- 180 (321)
T PTZ00325 105 VRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKA-GVYDPRKLFGVT-TLDVVRARKFVAEALGMNPYDVNVPV- 180 (321)
T ss_pred HHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhc-cCCChhheeech-hHHHHHHHHHHHHHhCcChhheEEEE-
Confidence 999999999998 69999999999999999996 66 7999999 5777 59999999999999999999999995
Q ss_pred EeecCC-ceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcC---CcChHHHHHHHHHHHHHHHHh
Q 021646 162 WGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR---KLSSALSAASSACDHIRDWVL 237 (309)
Q Consensus 162 ~GehG~-s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~k---g~t~~~~~a~a~~~~i~~~i~ 237 (309)
|||||+ +|||+||++ |.|+. +++ .+++.+++++++++|++.| |+|. +++|+++++++++++.
T Consensus 181 lGeHGd~s~v~~~S~~-------g~~l~----~~~--~~~i~~~v~~~g~~Ii~~k~~kg~t~-~g~a~a~~~i~~ail~ 246 (321)
T PTZ00325 181 VGGHSGVTIVPLLSQT-------GLSLP----EEQ--VEQITHRVQVGGDEVVKAKEGAGSAT-LSMAYAAAEWSTSVLK 246 (321)
T ss_pred EeecCCcccccchhcc-------CCCCC----HHH--HHHHHHHHHHHHHHHHhcccCCCCch-HHHHHHHHHHHHHHHh
Confidence 899999 899999998 34553 222 3689999999999999987 4555 5778899998876554
Q ss_pred C-CCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 021646 238 G-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 238 ~-~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~~ 309 (309)
+ +++++++|++ +++|+||+ +++|+|+|+++ ++|++++++.++|+++|+++|++|++.|++.+++++.|++
T Consensus 247 ~~~~~~~v~~~~-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~ 318 (321)
T PTZ00325 247 ALRGDKGIVECA-FVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFAR 318 (321)
T ss_pred hcCCCCCeEEEE-EEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 2378889985 89999997 89999999986 9999999964799999999999999999999999999874
No 31
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=7e-56 Score=412.20 Aligned_cols=273 Identities=26% Similarity=0.388 Sum_probs=244.2
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeec-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~-~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
+++|+|++ +++++|+++|++|...+.....++. +++++++++||+||+++|.|+++|++|.+++..|+++++++++.
T Consensus 28 ev~L~D~~--~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~ 105 (307)
T PRK06223 28 DVVLFDIV--EGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEG 105 (307)
T ss_pred EEEEEECC--CchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 89999996 6789999999999875443333443 35678999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeee
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 172 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~ 172 (309)
|.+++ |++++|++|||+|+|||+++++ +|+|++| ||.||.|||+||+++||++++++|++|++++ +||||++++|+
T Consensus 106 i~~~~-~~~~viv~tNP~d~~~~~~~~~-s~~~~~~viG~gt~lds~r~~~~la~~l~v~~~~v~~~v-iGehg~s~~p~ 182 (307)
T PRK06223 106 IKKYA-PDAIVIVVTNPVDAMTYVALKE-SGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFV-LGGHGDSMVPL 182 (307)
T ss_pred HHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCcccEEEeCCCcHHHHHHHHHHHHhCcChhhCcccE-EcCCCCcceEc
Confidence 99999 6999999999999999999999 6999999 6999999999999999999999999999996 79999999999
Q ss_pred cCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhc--CCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeee
Q 021646 173 VNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVY 250 (309)
Q Consensus 173 ~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~--kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~ 250 (309)
||++++ +|.|+.+++++ +| .+++.+.+++++++|++. ||++. +++|.++++++.+ ++.+ ++.++|+|++
T Consensus 183 ~S~~~v----~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~kg~t~-~~~A~~~~~ii~a-il~~-~~~~~~~~v~ 253 (307)
T PRK06223 183 VRYSTV----GGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKTGSAY-YAPAASIAEMVEA-ILKD-KKRVLPCSAY 253 (307)
T ss_pred hhhCEE----CCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhcccCChh-HHHHHHHHHHHHH-HHcC-CCcEEEEEEE
Confidence 999999 99999988543 44 368999999999999996 66555 5567788888764 5565 8999999999
Q ss_pred cCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021646 251 SDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTL 303 (309)
Q Consensus 251 ~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~ 303 (309)
++|+||+ +++|||+||++ ++|++++++ ++|+++|+++|++|++.|++.++.
T Consensus 254 ~~g~yg~-~~~~~s~P~~i~~~Gv~~i~~-~~l~~~e~~~l~~s~~~l~~~~~~ 305 (307)
T PRK06223 254 LEGEYGV-KDVYVGVPVKLGKNGVEKIIE-LELDDEEKAAFDKSVEAVKKLIEA 305 (307)
T ss_pred ecCcCCC-CCeEEEeEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 89999999986 999999997 999999999999999999988764
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-56 Score=411.14 Aligned_cols=270 Identities=21% Similarity=0.313 Sum_probs=232.8
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceee--cCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA--TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQA 91 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~--~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~ 91 (309)
.+|+|+|+++ .++|+++||+|... ...+.. ..+.+++++++|+||+|+|.+++++++|.+++..|++++++++
T Consensus 28 ~el~L~d~~~---~~~g~alDl~~~~~--~~~i~~~~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii 102 (312)
T PRK05086 28 SELSLYDIAP---VTPGVAVDLSHIPT--AVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102 (312)
T ss_pred cEEEEEecCC---CCcceehhhhcCCC--CceEEEeCCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4899999973 36899999999631 123333 2344899999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEecCchhHHHHHHH----HHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecC
Q 021646 92 SALEKHAAPNCKVLVVANPANTNALILK----EFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 166 (309)
Q Consensus 92 ~~i~~~~~p~~~vivvsnPvd~~t~~~~----~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG 166 (309)
+.|++++ |+++++++|||+|+||++++ ++ +|+|++| ||+|+ |||+||++++|++++++|++|++++ |||||
T Consensus 103 ~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~-sg~p~~rvig~~~-Lds~R~~~~ia~~l~~~~~~v~~~v-~GeHg 178 (312)
T PRK05086 103 EKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKA-GVYDKNKLFGVTT-LDVIRSETFVAELKGKQPGEVEVPV-IGGHS 178 (312)
T ss_pred HHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHh-cCCCHHHEEeeec-HHHHHHHHHHHHHhCCChhheEEEE-EEecC
Confidence 9999998 69999999999999999998 88 7999999 57765 9999999999999999999999885 99998
Q ss_pred C-ceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcC---CcChHHHHHHHHHHHHHHHHhC-CCC
Q 021646 167 S-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR---KLSSALSAASSACDHIRDWVLG-TPK 241 (309)
Q Consensus 167 ~-s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~k---g~t~~~~~a~a~~~~i~~~i~~-~~~ 241 (309)
+ +|||+||++ +|.|+.+ ++ .+++.+++++++++|++.| |+|. +++|.++++++.+++.+ +++
T Consensus 179 ~~s~~p~~S~~------~g~~l~~----~~--~~~i~~~v~~~g~~ii~~k~~~g~t~-~~~a~a~~~~v~ai~~~~~~~ 245 (312)
T PRK05086 179 GVTILPLLSQV------PGVSFTE----QE--VADLTKRIQNAGTEVVEAKAGGGSAT-LSMGQAAARFGLSLVRALQGE 245 (312)
T ss_pred CCceecccccc------CCccCCH----HH--HHHHHHHHHHHHHHHHhcccCCCCch-hhHHHHHHHHHHHHHhcCCCC
Confidence 6 999999998 3677732 22 3689999999999999987 5555 56788999998865543 237
Q ss_pred ceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 021646 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGL-KVDEFSRAKMDATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 242 ~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~-~L~~~E~~~l~~s~~~i~~~i~~~~~~~~ 309 (309)
++++|++ +++|+ |. .++|||+|+++ ++|++++++ + +|+++|+++|++|++.|++.++++.+|++
T Consensus 246 ~~v~~~~-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~ 311 (312)
T PRK05086 246 QGVVECA-YVEGD-GK-YARFFAQPVLLGKNGVEERLP-IGTLSAFEQNALEGMLDTLKKDIALGEEFVN 311 (312)
T ss_pred CcEEEEE-EEecc-CC-cceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8899976 88886 76 79999999986 999999998 8 99999999999999999999999999874
No 33
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1e-54 Score=404.38 Aligned_cols=264 Identities=25% Similarity=0.371 Sum_probs=223.7
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCC-cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~-~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
+|+|+|+++ ++|++|||+|+..+.. ..+...++.+++++|||+||+|+|.+++|+++|++++..|+++++++++.
T Consensus 46 el~L~Di~~----~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~ 121 (323)
T PLN00106 46 ELHLYDIAN----TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEA 121 (323)
T ss_pred EEEEEecCC----CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999972 7999999999986421 11122334489999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchh----HHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCC-
Q 021646 94 LEKHAAPNCKVLVVANPAN----TNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS- 167 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd----~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~- 167 (309)
+++++ |+++++++|||+| +|+|++++. +++||+| ||++ .||++||++++|++++++|.+|++++ +||||+
T Consensus 122 i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~-s~~p~~~viG~~-~LDs~Rl~~~lA~~lgv~~~~V~~~V-iGeHg~~ 197 (323)
T PLN00106 122 VAKHC-PNALVNIISNPVNSTVPIAAEVLKKA-GVYDPKKLFGVT-TLDVVRANTFVAEKKGLDPADVDVPV-VGGHAGI 197 (323)
T ss_pred HHHHC-CCeEEEEeCCCccccHHHHHHHHHHc-CCCCcceEEEEe-cchHHHHHHHHHHHhCCChhheEEEE-EEeCCCc
Confidence 99999 7999999999999 999999999 7999999 5776 59999999999999999999999996 799975
Q ss_pred ceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcC---CcChHHHHHHHHHHHHHHHHhCC-CCce
Q 021646 168 TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR---KLSSALSAASSACDHIRDWVLGT-PKGT 243 (309)
Q Consensus 168 s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~k---g~t~~~~~a~a~~~~i~~~i~~~-~~~~ 243 (309)
+|||+||++++ .. + +.+++ .+++.++++++|++|++.| |+|. +++|.++++++++++.+. +++.
T Consensus 198 s~vp~~S~~~~----~~----~-~~~~~--~~~i~~~v~~~g~~Ii~~k~~kg~t~-~~~a~a~~~ii~ail~~~~~~~~ 265 (323)
T PLN00106 198 TILPLLSQATP----KV----S-FTDEE--IEALTKRIQNGGTEVVEAKAGAGSAT-LSMAYAAARFADACLRGLNGEAD 265 (323)
T ss_pred cEeeehhccee----cc----c-CCHHH--HHHHHHHHHHHHHHHHhCccCCCCch-HHHHHHHHHHHHHHHhccCCCce
Confidence 99999999977 21 1 12222 3689999999999999974 5555 578889999987655431 2679
Q ss_pred EEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 021646 244 WVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGL-KVDEFSRAKMDATAEELAEEKT 302 (309)
Q Consensus 244 v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~-~L~~~E~~~l~~s~~~i~~~i~ 302 (309)
++|+| +.+|+| ..++|||+|+++ ++|++++++ + +|+++|+++|++|++.|++.++
T Consensus 266 v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 266 VVECS-YVQSEV--TELPFFASKVRLGRNGVEEVLG-LGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred EEEEE-EECccc--CCceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999 667765 223999999986 999999998 8 9999999999999999998775
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=3.1e-50 Score=366.64 Aligned_cols=235 Identities=33% Similarity=0.518 Sum_probs=212.6
Q ss_pred CeEEEEEEecCCccchhhHHHHHHhhccCCC-CcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHH
Q 021646 12 QPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQ 90 (309)
Q Consensus 12 ~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~-~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i 90 (309)
...+|+|+|++ +++++|.++||+|+..+. ..+++..++.+++++|||+||+|+|.++++|++|.+++.+|+++++++
T Consensus 25 ~~~el~L~D~~--~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i 102 (263)
T cd00650 25 LAIELVLYDID--EEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEI 102 (263)
T ss_pred cceEEEEEeCC--cccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHH
Confidence 56799999997 578999999999998665 345555555589999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCce
Q 021646 91 ASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 169 (309)
Q Consensus 91 ~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~ 169 (309)
++.++++| |+++++++|||+|+||++++++ +|+|++| ||.|| ||++|+++++|+++++++++|+++ |||+||+++
T Consensus 103 ~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~-sg~~~~kviG~~~-ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~~~ 178 (263)
T cd00650 103 GDNIEKYS-PDAWIIVVSNPVDIITYLVWRY-SGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVY-ILGEHGGSQ 178 (263)
T ss_pred HHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCchhEEEeec-chHHHHHHHHHHHhCCCccceEEE-EEEcCCCce
Confidence 99999999 7999999999999999999999 6999988 68888 999999999999999999999977 599999999
Q ss_pred eeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeee
Q 021646 170 YPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGV 249 (309)
Q Consensus 170 vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv 249 (309)
+|+||+++ +|.++++++.+ +.++ ++.++|+|+
T Consensus 179 ~~~~s~~~----------------------------------------------~a~~~~~ii~a-i~~~-~~~~~~v~v 210 (263)
T cd00650 179 VPDWSTVR----------------------------------------------IATSIADLIRS-LLND-EGEILPVGV 210 (263)
T ss_pred Eeccccch----------------------------------------------HHHHHHHHHHH-HHcC-CCEEEEEEE
Confidence 99999744 45677888875 4455 899999999
Q ss_pred ecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 021646 250 YSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 301 (309)
Q Consensus 250 ~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i 301 (309)
+++|+||+|+|+|||+|+++ ++|++++++ ++|+++|+++|++|++.++..+
T Consensus 211 ~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 211 RNNGQIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred EeCCccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998899999999986 999999998 9999999999999999998765
No 35
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.9e-50 Score=356.51 Aligned_cols=283 Identities=26% Similarity=0.347 Sum_probs=241.0
Q ss_pred ccccCCCCeEE-----------EEEEecCCccchhhHHHHHHhhccCCC-CcceeecCChhhhcCCCcEEEEeCCCCCCC
Q 021646 5 GIMLGPDQPVI-----------LHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIAVMVGGFPRKE 72 (309)
Q Consensus 5 g~~~~~~~~~~-----------l~L~D~~~~~~~~~g~~~DL~~~~~~~-~~~~~~~~~~~~~l~~aDiVVitag~~~~~ 72 (309)
|+..|.+||++ |+|||+. .+.|.+.||+|+++.. ..++....+.+.++++||+|||.||.||||
T Consensus 35 GAaGGIGQPLSLLlK~np~Vs~LaLYDi~----~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKP 110 (345)
T KOG1494|consen 35 GAAGGIGQPLSLLLKLNPLVSELALYDIA----NTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKP 110 (345)
T ss_pred ecCCccCccHHHHHhcCcccceeeeeecc----cCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCC
Confidence 78889999986 4799997 4789999999999764 567777778999999999999999999999
Q ss_pred CCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHC---CCCCCCcEEEechhHHHHHHHHHHHHh
Q 021646 73 GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA---PSIPAKNITCLTRLDHNRAMGQISERL 149 (309)
Q Consensus 73 ~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~---~~~~~~~ig~gt~lds~R~~~~la~~l 149 (309)
||+|+|||..|+.|+++++..++++| |++++.++|||||.+++++.+.+ +-|+|+|+.+.|+||..|.++|+++.+
T Consensus 111 GMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~ 189 (345)
T KOG1494|consen 111 GMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVL 189 (345)
T ss_pred CCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHh
Confidence 99999999999999999999999999 79999999999999888777654 348999998999999999999999999
Q ss_pred CCCC-CCeeeeEEEeecCC-ceeeecCCceeecCCCCcchhhhhcccccchhHHHHHHHhhHHHHHhcCCc--ChHHHHH
Q 021646 150 KVHV-SDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL--SSALSAA 225 (309)
Q Consensus 150 ~v~~-~~v~~~vV~GehG~-s~vp~~S~~~v~~~~~~~pl~~~~~~~~~~~~el~~~v~~~~~~i~~~kg~--t~~~~~a 225 (309)
+++| ++++ ++|+|+|.. |.+|++|+.++... ..+++ .+.++.+++++|.|+.+.|.. +..+|+|
T Consensus 190 ~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~p~~~---------~~~~~--~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMA 257 (345)
T KOG1494|consen 190 NLDPAEDVD-VPVIGGHAGITIIPLLSQCKPPFR---------FTDDE--IEALTHRIQNGGTEVVKAKAGAGSATLSMA 257 (345)
T ss_pred CCCchhcCC-cceecCcCCceEeeecccCCCccc---------CCHHH--HHHHHHHHHhCCceEEEeccCCCchhhhHH
Confidence 9999 5476 778999986 99999999888210 12222 368999999999999998853 5568999
Q ss_pred HHHHHHHH---HHHhCCCCceEEEeeeecCCCCCCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 021646 226 SSACDHIR---DWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEK 301 (309)
Q Consensus 226 ~a~~~~i~---~~i~~~~~~~v~~~sv~~~g~ygi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i 301 (309)
+|.+++.. +.+.++ ++.+.|..|+++. +++ .||+.|+++ ++||+++....+|+++|++.|+.+..+|++.|
T Consensus 258 yAga~fa~s~lrgl~G~-~~v~ecafV~s~~-~~~---~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI 332 (345)
T KOG1494|consen 258 YAGAKFADSLLRGLNGD-EDVVECAFVASPV-TEL---PFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSI 332 (345)
T ss_pred HHHHHHHHHHHHHhCCC-CCeEEEeEEeccc-cCc---cceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHH
Confidence 98877643 345565 6777777787763 344 699999986 99999999733799999999999999999999
Q ss_pred HHHhhhhC
Q 021646 302 TLAYSCLN 309 (309)
Q Consensus 302 ~~~~~~~~ 309 (309)
+++.+|.+
T Consensus 333 ~KGv~F~~ 340 (345)
T KOG1494|consen 333 EKGVTFVK 340 (345)
T ss_pred HhhHHHHh
Confidence 99998863
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=3.5e-39 Score=276.60 Aligned_cols=168 Identities=31% Similarity=0.438 Sum_probs=149.4
Q ss_pred chhHHHHHHHHHHHHhCCCCCCeeeeEEEeecCCceeeecCCceeecCCCCcchhhhhcc----cccchhHHHHHHHhhH
Q 021646 134 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRG 209 (309)
Q Consensus 134 t~lds~R~~~~la~~l~v~~~~v~~~vV~GehG~s~vp~~S~~~v~~~~~~~pl~~~~~~----~~~~~~el~~~v~~~~ 209 (309)
|+|||+||+++||++++++|++|++++ |||||+++||+||++++ +|.|+.++.+. .+|..+++.+++++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~V-iGeHg~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g 75 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYV-IGEHGDSQVPDWSHAKV----GGVPLLSYAKPSGKLSEEELEELTERVRKAG 75 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEE-EBSSSTTEEEEGGGEEE----TTEEHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEE-EecCCcceeeeeecccc----cccccccccccccchhHHhhhccccccEecc
Confidence 789999999999999999999999885 89999999999999999 99999876543 2344578999999999
Q ss_pred HHHHhcCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeeecCCCCCCCCc-eEEEEeEEe-cCCcEEEeCCCCCCHHHH
Q 021646 210 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEG-LIYSFPVTC-EKGEWSIVKGLKVDEFSR 287 (309)
Q Consensus 210 ~~i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~-v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~ 287 (309)
++|++.||.++++++|+++++++++++ .+ .+.++|+|++++|+||++.+ +|||+||++ ++|+++++++++|+++|+
T Consensus 76 ~~ii~~k~g~t~~s~A~a~~~~v~ail-~~-~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 153 (174)
T PF02866_consen 76 YEIIKAKGGSTSYSIAAAAARIVEAIL-KD-ERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQ 153 (174)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHH-TT-HTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHH
T ss_pred ceeeeeccccCcCCHHHHHHHHHHHHh-hc-ccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHH
Confidence 999999954555788999999987654 54 79999999999999999544 999999986 999999997689999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 021646 288 AKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 288 ~~l~~s~~~i~~~i~~~~~~~ 308 (309)
++|++|++.|+++++.+.+|.
T Consensus 154 ~~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 154 EKLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999874
No 37
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.96 E-value=1.9e-29 Score=208.92 Aligned_cols=114 Identities=32% Similarity=0.522 Sum_probs=105.8
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~ 93 (309)
.||+|+|++ +++++|+++||+|+++++..++.+..++|++++||||||||+|.+++||++|.++++.|++++++++++
T Consensus 27 ~ei~L~D~~--~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~ 104 (141)
T PF00056_consen 27 DEIVLIDIN--EDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKK 104 (141)
T ss_dssp SEEEEEESS--HHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEeccC--cccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHH
Confidence 479999997 679999999999999887667777778999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEE
Q 021646 94 LEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 131 (309)
Q Consensus 94 i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig 131 (309)
|++++ |+++++++|||+|+||++++++ +|+|++|+.
T Consensus 105 i~~~~-p~~~vivvtNPvd~~t~~~~~~-s~~~~~kvi 140 (141)
T PF00056_consen 105 IAKYA-PDAIVIVVTNPVDVMTYVAQKY-SGFPPNKVI 140 (141)
T ss_dssp HHHHS-TTSEEEE-SSSHHHHHHHHHHH-HTSSGGGEE
T ss_pred HHHhC-CccEEEEeCCcHHHHHHHHHHh-hCcCcccCc
Confidence 99999 7999999999999999999999 799999953
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.86 E-value=9.8e-20 Score=175.83 Aligned_cols=266 Identities=15% Similarity=0.140 Sum_probs=175.4
Q ss_pred EEEEEEecCCccchhh---HHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCC------------C----C
Q 021646 14 VILHMLDIEPAAEALN---GVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE------------G----M 74 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~---g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~------------~----~ 74 (309)
.+|+|+|++ +++++ ..+..+.....+ .-++..+++..++++|||.||.+.-...-+ | +
T Consensus 30 ~ei~L~Did--~~Rl~~v~~l~~~~~~~~g~-~~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqe 106 (425)
T cd05197 30 SEVTLYDID--EERLDIILTIAKRYVEEVGA-DIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQE 106 (425)
T ss_pred CEEEEEcCC--HHHHHHHHHHHHHHHHhhCC-CeEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccccc
Confidence 479999997 33443 223333222211 235677788899999999999986432110 1 0
Q ss_pred ----CHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHh
Q 021646 75 ----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERL 149 (309)
Q Consensus 75 ----sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l 149 (309)
--.-..-+|+++++++++.|.++| |+|++|++|||+|+||+++++. + |+.| ||.|+. ++|+++++|+.+
T Consensus 107 T~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a~~~~-~--p~~rviG~c~~--~~r~~~~ia~~l 180 (425)
T cd05197 107 TVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEAVRRY-V--PPEKAVGLCNV--PIGVMEIVAKLL 180 (425)
T ss_pred ccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHHHHHh-C--CCCcEEEECCC--HHHHHHHHHHHh
Confidence 011223369999999999999999 7999999999999999999998 3 6666 688887 999999999999
Q ss_pred CCCCCCeeeeEEEe-ecCCceeeecCCceeecCCCCcchhhhhc----c--------c-------ccc------------
Q 021646 150 KVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVREAVA----D--------D-------NWL------------ 197 (309)
Q Consensus 150 ~v~~~~v~~~vV~G-ehG~s~vp~~S~~~v~~~~~~~pl~~~~~----~--------~-------~~~------------ 197 (309)
++++++|++++ +| +|| +.||++++ +|+|+...+. + + .|.
T Consensus 181 gv~~~~v~~~v-~GlnHg----~~~s~~~~----~G~~l~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~ 251 (425)
T cd05197 181 GESEEKVDWQY-AGLNHG----IWLNRVRY----NGGDVTPKLDEWVEEKSKDWKTENPFVDQLSPAAIDFYRFYGVLPN 251 (425)
T ss_pred CCCHHHeEEEE-EeccCe----EeeEeEEE----CCeecHHHHHHHHhccCccccccccccccccchHHHHHHhCCCccc
Confidence 99999999886 89 999 99999999 6666653221 1 0 000
Q ss_pred --------hhH-HH----H---------HHHhhHH---HHHh------------cCCcChHHHHHHHHHHHHHHHHhCCC
Q 021646 198 --------NTE-FI----T---------TVQQRGA---AIIK------------ARKLSSALSAASSACDHIRDWVLGTP 240 (309)
Q Consensus 198 --------~~e-l~----~---------~v~~~~~---~i~~------------~kg~t~~~~~a~a~~~~i~~~i~~~~ 240 (309)
.++ +. + .+.+... +..+ .++. .+. +-.++.+|. ++.++
T Consensus 252 ~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r~~-~~~--~e~a~~ii~-ai~~~- 326 (425)
T cd05197 252 PYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGG-RKY--SEAAIPLIR-ALLND- 326 (425)
T ss_pred CCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhcCC-ccc--HHHHHHHHH-HHHcC-
Confidence 000 00 0 0000000 1110 0011 111 123456664 56676
Q ss_pred CceEEEeeeecCCCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021646 241 KGTWVSMGVYSDGSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTL 303 (309)
Q Consensus 241 ~~~v~~~sv~~~g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~ 303 (309)
.+.++.+.|.-+|.- ++|.|.++=+||++ ++|+...-- -+|.+.-...++.-...-+-.+++
T Consensus 327 ~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~Li~~~~~~e~l~veA 390 (425)
T cd05197 327 NGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGLLRQRKMRERLALEA 390 (425)
T ss_pred CCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888865 67899999999987 999987643 478776655555443333333433
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=99.85 E-value=2.3e-19 Score=173.71 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=179.9
Q ss_pred EEEEEecCCccchhh-HHHHHHhhccCCCC--cceeecCChhhhcCCCcEEEEeCCCC-CCCC--------------CCH
Q 021646 15 ILHMLDIEPAAEALN-GVKMELIDAAFPLL--KGVVATTDVVEACKDVNIAVMVGGFP-RKEG--------------MER 76 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~-g~~~DL~~~~~~~~--~~~~~~~~~~~~l~~aDiVVitag~~-~~~~--------------~sr 76 (309)
+|+|+|++ +++++ +.++ +++...... .+++.+++.+++++|||+||+|++.+ .+++ ++|
T Consensus 32 evvLvDid--~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r 108 (431)
T PRK15076 32 EIALMDID--PERLEESEIV-ARKLAESLGASAKITATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTI 108 (431)
T ss_pred EEEEECCC--HHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeec
Confidence 89999997 56777 7777 777664332 34555566689999999999999987 4555 567
Q ss_pred HHH--------HHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEe-chhHHHHHHHHHH
Q 021646 77 KDV--------MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCL-TRLDHNRAMGQIS 146 (309)
Q Consensus 77 ~~~--------~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~g-t~lds~R~~~~la 146 (309)
.+. +.+|+++++++++.|+++| |+|.+|++|||+|++|+.++ ++|+.| ||.+ |.+|++ +.+|
T Consensus 109 ~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~divt~~~~----~~~~~rviG~c~~~~~~~---~~ia 180 (431)
T PRK15076 109 GDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMAMNTWAMN----RYPGIKTVGLCHSVQGTA---EQLA 180 (431)
T ss_pred ccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh----cCCCCCEEEECCCHHHHH---HHHH
Confidence 787 8899999999999999999 79999999999999999988 456666 7999 999998 5899
Q ss_pred HHhCCCCCCeeeeEEEe-ecCCceeeecCCceeecCCC---------------------------C-cc------hhhhh
Q 021646 147 ERLKVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKG---------------------------E-KP------VREAV 191 (309)
Q Consensus 147 ~~l~v~~~~v~~~vV~G-ehG~s~vp~~S~~~v~~~~~---------------------------~-~p------l~~~~ 191 (309)
+.+++++++|++++ .| +|-. .+.+.+...++- + .| +.+++
T Consensus 181 ~~l~v~~~~v~~~~-~GlNH~~----W~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 255 (431)
T PRK15076 181 RDLGVPPEELRYRC-AGINHMA----WYLELERKGEDLYPELRAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYV 255 (431)
T ss_pred HHhCCCHHHeEEEE-Eeecchh----hheeeeECCcchHHHHHHHHhccCchhcccccHHHHHHhCCCcccchhhhhhhh
Confidence 99999999999886 57 5542 233333311000 0 00 00100
Q ss_pred cccccc----hhHHHHHH--------------HhhHHHHH-hcCCcChHH--HHHHHHHHHHHHHHhCCCCceEEEeeee
Q 021646 192 ADDNWL----NTEFITTV--------------QQRGAAII-KARKLSSAL--SAASSACDHIRDWVLGTPKGTWVSMGVY 250 (309)
Q Consensus 192 ~~~~~~----~~el~~~v--------------~~~~~~i~-~~kg~t~~~--~~a~a~~~~i~~~i~~~~~~~v~~~sv~ 250 (309)
.|. .++..+.. .....+.. +..+..++. ..+-.+++++. ++.++ .+.++.+.|.
T Consensus 256 ---~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~-ai~~~-~~~~~~vnv~ 330 (431)
T PRK15076 256 ---PWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSREYASTIIE-AIETG-EPSVIYGNVR 330 (431)
T ss_pred ---cccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccchHHHHHHHH-HHhcC-CceEEEEECC
Confidence 011 11111110 01111111 122221110 01224567665 56676 7888899998
Q ss_pred cCCCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 251 SDGSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 251 ~~g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
-+|.. ++|.|.++=+|+.+ ++|+..+-- -+|.+..+..++.-...-+-.++++
T Consensus 331 N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~~~e~l~veAa 385 (431)
T PRK15076 331 NNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNINVQELTVEAA 385 (431)
T ss_pred CCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88865 67899999999987 999998754 4798887777665554444344433
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.82 E-value=7.1e-18 Score=162.65 Aligned_cols=269 Identities=18% Similarity=0.152 Sum_probs=174.5
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCC--CcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHH------------
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDV------------ 79 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~--~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~------------ 79 (309)
.+|+|+|+++ ++++.-...-.+...... .-.+..+++..++++|||.||++.+....+++.+++.
T Consensus 30 ~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET 108 (419)
T cd05296 30 TELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQET 108 (419)
T ss_pred CEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccC
Confidence 4899999973 355544434344333222 2356667788999999999999999888787777774
Q ss_pred --------HHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhCC
Q 021646 80 --------MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKV 151 (309)
Q Consensus 80 --------~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~v 151 (309)
..+|+++++++++.|+++| |+|.+|++|||+|++|+.+++. + +.+.||+++. +.|+++++|+.+++
T Consensus 109 ~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~ivt~a~~k~-~--~~rviGlc~~--~~r~~~~ia~~lg~ 182 (419)
T cd05296 109 TGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIVTEAVLRH-T--GDRVIGLCNV--PIGLQRRIAELLGV 182 (419)
T ss_pred CCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHHHh-c--cCCEEeeCCc--HHHHHHHHHHHhCC
Confidence 5678899999999999999 7999999999999999999998 4 3334677755 59999999999999
Q ss_pred CCCCeeeeEEEe-ecCCceeeecCCceeecCC-----------------------------CCcchhhhhcccccc-hhH
Q 021646 152 HVSDVKNVIIWG-NHSSTQYPDVNHATVTTSK-----------------------------GEKPVREAVADDNWL-NTE 200 (309)
Q Consensus 152 ~~~~v~~~vV~G-ehG~s~vp~~S~~~v~~~~-----------------------------~~~pl~~~~~~~~~~-~~e 200 (309)
++++|+.++ +| +|-.= +.+.+...++ +-.|.. ++. -|. .++
T Consensus 183 ~~~~v~~~v-~GlNH~~w----~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~-Yl~--yy~~~~~ 254 (419)
T cd05296 183 DPEDVFIDY-AGLNHLGW----LRRVLLDGEDVLPELLEDLAALLSFEEGLLFGPELLRALGALPNE-YLR--YYYQTDE 254 (419)
T ss_pred CHHHceEEE-Eeccccee----eeeeeECCcccHHHHHHHhhhccccccccchHHHHHHhcCCcccc-hHH--HHCCcHH
Confidence 999999885 79 87531 1222221000 001110 000 000 011
Q ss_pred HHHH-HHh---hH-------HHH---Hh------------cCCcChHHHHHHHHHHHHHHHHhCCCCceEEEeeeecCCC
Q 021646 201 FITT-VQQ---RG-------AAI---IK------------ARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS 254 (309)
Q Consensus 201 l~~~-v~~---~~-------~~i---~~------------~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ 254 (309)
..+. ... ++ .++ .+ .++.+ +.+ -.++.+|. ++.++ ++.++-+.|.-+|.
T Consensus 255 ~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~-~y~--e~a~~ii~-ai~~~-~~~~~~vNv~N~G~ 329 (419)
T cd05296 255 ALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGA-GYS--EAALALIS-AIYND-KGDIHVVNVRNNGA 329 (419)
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCc-chH--HHHHHHHH-HHhcC-CCcEEEEECCCCCC
Confidence 1110 000 00 111 11 11111 111 23456665 56665 78888888888886
Q ss_pred C-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021646 255 Y-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTL 303 (309)
Q Consensus 255 y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~ 303 (309)
- ++|.|.++=+|+.+ ++|+..+-- -+|.+.....++.-...-+-.+++
T Consensus 330 I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l~veA 379 (419)
T cd05296 330 IPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERLTIEA 379 (419)
T ss_pred CCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 67899999999987 999997643 378888776665544333333443
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.75 E-value=1.7e-15 Score=146.80 Aligned_cols=272 Identities=16% Similarity=0.152 Sum_probs=166.4
Q ss_pred EEEEEEecCCccchhhHH---HHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCC---------------C-C
Q 021646 14 VILHMLDIEPAAEALNGV---KMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE---------------G-M 74 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~---~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~---------------~-~ 74 (309)
.+|+|+|++ +++++-. +..+-.... ..-++..+++..++++|||.||.+.-....+ | +
T Consensus 30 ~ei~L~DId--~~rl~~v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqE 106 (437)
T cd05298 30 RELVLYDID--AERQEKVAEAVKILFKENY-PEIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQE 106 (437)
T ss_pred CEEEEECCC--HHHHHHHHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceec
Confidence 479999997 3444331 222222111 1235667788899999999999986432111 1 1
Q ss_pred C----HHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhC
Q 021646 75 E----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 150 (309)
Q Consensus 75 s----r~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~ 150 (309)
+ =.-..-+|++++.++++.|.++| |+|.+|+.|||+|++|+.+++. +|+.|+.+.|.--.. ++..+|+.++
T Consensus 107 T~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~vt~~~~~~---~~~~kviGlC~~~~~-~~~~la~~lg 181 (437)
T cd05298 107 TCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIVAEALRRL---FPNARILNICDMPIA-IMDSMAAILG 181 (437)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH---CCCCCEEEECCcHHH-HHHHHHHHhC
Confidence 1 01133479999999999999999 7999999999999999999987 577776555543322 5667999999
Q ss_pred CCCCCeeeeEEEe-ecCCceeeecCCceeecCCCCcchhhhhc----c--------------cccc--------------
Q 021646 151 VHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVREAVA----D--------------DNWL-------------- 197 (309)
Q Consensus 151 v~~~~v~~~vV~G-ehG~s~vp~~S~~~v~~~~~~~pl~~~~~----~--------------~~~~-------------- 197 (309)
+++++++-.+ .| +|.. .+.+.+.. .|+.+...+. + ..|.
T Consensus 182 ~~~~~v~~~~-~GlNH~~----w~~~~~~~---~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 253 (437)
T cd05298 182 LDRKDLEPDY-FGLNHFG----WFTKIYDK---QGEDLLPKLREHVKENGYLPPDSDEEHRDPSWNDTFANAKDMMADFP 253 (437)
T ss_pred CCHHHceEEE-Eeecchh----hhhheEEC---CCCchHHHHHHHHhccCCCcccccccccccCchHHHHHHhhHHHhCC
Confidence 9999999554 56 5532 23333331 0111111000 0 0000
Q ss_pred -------------hhHHHHH-----------HHhhHHHHH-------hcCCcC--hHH--HHHHHHHHHHHHHHhCCCCc
Q 021646 198 -------------NTEFITT-----------VQQRGAAII-------KARKLS--SAL--SAASSACDHIRDWVLGTPKG 242 (309)
Q Consensus 198 -------------~~el~~~-----------v~~~~~~i~-------~~kg~t--~~~--~~a~a~~~~i~~~i~~~~~~ 242 (309)
.+++.+. +.....+.+ ...... .+. .-|.++++++. +|.++ ++
T Consensus 254 ~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ya~~a~~ii~-aI~~d-~~ 331 (437)
T cd05298 254 DYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFHVDVHGEYIVDLAA-SIAYN-TK 331 (437)
T ss_pred CcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhhhccchHHHHHHHHH-HHHcC-CC
Confidence 0000000 000011110 000000 111 12345677765 56676 89
Q ss_pred eEEEeeeecCCCCC-CCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 243 TWVSMGVYSDGSYG-IPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 243 ~v~~~sv~~~g~yg-i~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
+++++|++.+|.|+ +|.|+++++|+++ ++|+..+-- -+|.+.....++.-...-+-.++++
T Consensus 332 ~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~~~~e~l~veAa 394 (437)
T cd05298 332 ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQVAYEKLLVEAY 394 (437)
T ss_pred eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 5789999999986 999998754 4798887777665555444444443
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.74 E-value=5.7e-16 Score=150.17 Aligned_cols=270 Identities=14% Similarity=0.082 Sum_probs=179.3
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCC--CcceeecCChhhhcCCCcEEEEeCCCCCCCCCCH---------------
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMER--------------- 76 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~--~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr--------------- 76 (309)
.+++|+|++ +++++....++.+..... ..++..+++.++++++||+||++.+....++.++
T Consensus 30 ~eV~L~Did--~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~ 107 (423)
T cd05297 30 STIALMDID--EERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVG 107 (423)
T ss_pred CEEEEECCC--HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeecc
Confidence 379999997 678899999988765322 2456666677889999999999999877666665
Q ss_pred -------HHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHh
Q 021646 77 -------KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 149 (309)
Q Consensus 77 -------~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l 149 (309)
......|.++++++++.+.++| |+++++..|||+|+||+.+++. ++ .+.||+++. +.|+++.+|+.+
T Consensus 108 ~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t~~~~k~-~~--~rviG~c~~--~~~~~~~~a~~l 181 (423)
T cd05297 108 DTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELTWALNRY-TP--IKTVGLCHG--VQGTAEQLAKLL 181 (423)
T ss_pred CCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHHHHHHHh-CC--CCEEEECCc--HHHHHHHHHHHh
Confidence 3456678999999999999999 6999999999999999999999 45 344788866 899999999999
Q ss_pred CCCCCCeeeeEEEe-ecCCceeeecCCceeecCCCCcchhhhh----------------------c-----cc-------
Q 021646 150 KVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVREAV----------------------A-----DD------- 194 (309)
Q Consensus 150 ~v~~~~v~~~vV~G-ehG~s~vp~~S~~~v~~~~~~~pl~~~~----------------------~-----~~------- 194 (309)
++++++|++++ +| +|.. .|...+. +|+.+...+ . +.
T Consensus 182 ~~~~~~v~~~~-~GlNH~~----w~~~~~~----~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~ 252 (423)
T cd05297 182 GEPPEEVDYQV-AGINHMA----WLLKFEY----NGEDLYPLLDEWIEEGSEEWDQLSPVRFDMYRRYGLFPTESSEHLS 252 (423)
T ss_pred CCCHHHeEEEE-EeeccHh----hhhhheE----CCcchHHHHHHHHhccCccchhcccchHHHHHHcCCcccCcchhhh
Confidence 99999999886 68 6542 2222332 111111000 0 00
Q ss_pred ccc-----hhHH--------------HHHHHhhHHHHHhcCC-cC-----hHHH--HHHHHHHHHHHHHhCCCCceEEEe
Q 021646 195 NWL-----NTEF--------------ITTVQQRGAAIIKARK-LS-----SALS--AASSACDHIRDWVLGTPKGTWVSM 247 (309)
Q Consensus 195 ~~~-----~~el--------------~~~v~~~~~~i~~~kg-~t-----~~~~--~a~a~~~~i~~~i~~~~~~~v~~~ 247 (309)
+|. .++. .+...+.-+.-....+ .. .... .+-.++++|. ++.++ ++.++.+
T Consensus 253 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~-ai~~~-~~~~~~v 330 (423)
T cd05297 253 EYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEYASPIIE-ALVTG-KPRRING 330 (423)
T ss_pred hhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhccccccchHHHHHHHH-HHhcC-CceEEEE
Confidence 000 0000 0000000000000000 00 0000 1123556665 56675 8888889
Q ss_pred eeecCCCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 021646 248 GVYSDGSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTL 303 (309)
Q Consensus 248 sv~~~g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~ 303 (309)
.|.-+|.- ++|.|.++=+||.+ ++|+..+-- -+|.......++.-...-+-.+++
T Consensus 331 nv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~e~l~veA 387 (423)
T cd05297 331 NVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINVQELAVEA 387 (423)
T ss_pred ECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99888865 78899999999987 999997653 478877777666554444334443
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.4e-07 Score=87.20 Aligned_cols=274 Identities=18% Similarity=0.163 Sum_probs=162.5
Q ss_pred EEEEEEecCCccchhhHHHHHHhhcc-CCC--CcceeecCChhhhcCCCcEEEEeCCCCC------------CCC----C
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAA-FPL--LKGVVATTDVVEACKDVNIAVMVGGFPR------------KEG----M 74 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~-~~~--~~~~~~~~~~~~~l~~aDiVVitag~~~------------~~~----~ 74 (309)
.+|.|+|++ +++++ ..-++..-- -.. .-++..+++..++|+|||.||.+.-... |-| +
T Consensus 33 ~el~L~Did--~~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqE 109 (442)
T COG1486 33 RELALYDID--EERLK-IIAILAKKLVEEAGAPVKVEATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQE 109 (442)
T ss_pred ceEEEEeCC--HHHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccc
Confidence 379999997 45555 333333321 111 1345666788999999999999864321 101 0
Q ss_pred C----HHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHHHhC
Q 021646 75 E----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 150 (309)
Q Consensus 75 s----r~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~~l~ 150 (309)
+ =.-..-++.+.+-+|++.|.++| |+|-++.-|||.-..|..+.+++ |.-|+.+.|.- -.-....||+.|+
T Consensus 110 T~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~vTeAv~r~~---~~~K~VGlCh~-~~g~~~~lAe~L~ 184 (442)
T COG1486 110 TNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAIVTEAVRRLY---PKIKIVGLCHG-PIGIAMELAEVLG 184 (442)
T ss_pred cccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHHHHHHHHHhC---CCCcEEeeCCc-hHHHHHHHHHHhC
Confidence 0 01112268999999999999999 89999999999999999999983 43254344432 1334668999999
Q ss_pred CCC-CCeeeeEEEe-ecCCceeeecCCceeecCC----------------------------------CCcchhhh----
Q 021646 151 VHV-SDVKNVIIWG-NHSSTQYPDVNHATVTTSK----------------------------------GEKPVREA---- 190 (309)
Q Consensus 151 v~~-~~v~~~vV~G-ehG~s~vp~~S~~~v~~~~----------------------------------~~~pl~~~---- 190 (309)
+.+ ++++ +-+.| +|. ..|..++....+ -|.++...
T Consensus 185 ~~~~~~l~-~~~aGlNH~----~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 259 (442)
T COG1486 185 LEPREDLR-YRVAGLNHM----VWILRVRDDGEDLYPELLEALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHR 259 (442)
T ss_pred CCchhcee-EEEeechhh----hhhhHhhhcCccchHHHHHHHhccccCCccccccccCcchHHHHHHhCcCcccCcchh
Confidence 976 9998 44466 543 222222220000 00111100
Q ss_pred --------hcccc-----c-ch-hHHHHHHHh--hHH-H--------HHhcCCcChHHHHHHHHHHHHHHHHhCCCCceE
Q 021646 191 --------VADDN-----W-LN-TEFITTVQQ--RGA-A--------IIKARKLSSALSAASSACDHIRDWVLGTPKGTW 244 (309)
Q Consensus 191 --------~~~~~-----~-~~-~el~~~v~~--~~~-~--------i~~~kg~t~~~~~a~a~~~~i~~~i~~~~~~~v 244 (309)
...+. | .+ ++..+.-++ ..+ + ..+.++.+.-.+ +-.++.++. ++.++ ++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~e~a~~ii~-Ai~~~-~~~~ 336 (442)
T COG1486 260 YYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKRIGAGKYS-SEYASNIIN-AIENN-KPSR 336 (442)
T ss_pred hheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhcCCccccc-HHHHHHHHH-HHhcC-CceE
Confidence 00000 0 00 011110000 000 0 001111110011 123566664 66676 8999
Q ss_pred EEeeeecCCCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 245 VSMGVYSDGSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 245 ~~~sv~~~g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
+.+.|.-+|.- ++|.|..+=+||++ ++|++-+.. ..|.+.-...++.....-+-.++++
T Consensus 337 ~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~~i~~e~l~veA~ 397 (442)
T COG1486 337 IYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHTNINVEELTVEAA 397 (442)
T ss_pred EEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988864 78999999999987 999999776 7899999988877666555555444
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=98.50 E-value=3.7e-06 Score=72.35 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=84.5
Q ss_pred eEEEEEEecCCccchhhH---HHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCC------------CCCC----
Q 021646 13 PVILHMLDIEPAAEALNG---VKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFP------------RKEG---- 73 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g---~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~------------~~~~---- 73 (309)
..+|+|+|++ +++++- .+--+-.... ..-++..+++..++++|||.||.+.... .+-|
T Consensus 28 ~~ei~L~Did--~~RL~~~~~~~~~~~~~~~-~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~ 104 (183)
T PF02056_consen 28 GSEIVLMDID--EERLEIVERLARRMVEEAG-ADLKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGT 104 (183)
T ss_dssp EEEEEEE-SC--HHHHHHHHHHHHHHHHHCT-TSSEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-B
T ss_pred CcEEEEEcCC--HHHHHHHHHHHHHHHHhcC-CCeEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccc
Confidence 3589999997 456652 2223322221 1235666788899999999999986542 1212
Q ss_pred --CC--H--HHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhHHHHHHHHHHH
Q 021646 74 --ME--R--KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISE 147 (309)
Q Consensus 74 --~s--r--~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~lds~R~~~~la~ 147 (309)
++ - .-..-++.+.+.++++.+.++| |+|-++.-|||+-.+|..+.+.+ |.-|+.+.|.-- .-+...+|+
T Consensus 105 ~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~a~~r~~---~~~k~vGlCh~~-~~~~~~la~ 179 (183)
T PF02056_consen 105 IQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTEALSRYT---PKIKVVGLCHGP-QGTRRQLAK 179 (183)
T ss_dssp TTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHHHHHHHS---TTSEEEEE-SHH-HHHHHHHHH
T ss_pred cccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHHHHHHhC---CCCCEEEECCCH-HHHHHHHHH
Confidence 11 1 2233378999999999999999 89999999999999999999884 445554555433 334556777
Q ss_pred HhC
Q 021646 148 RLK 150 (309)
Q Consensus 148 ~l~ 150 (309)
.||
T Consensus 180 ~L~ 182 (183)
T PF02056_consen 180 LLG 182 (183)
T ss_dssp HHT
T ss_pred HhC
Confidence 776
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.77 E-value=3.8 Score=39.51 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=55.6
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCC-C-------------cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPL-L-------------KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~-~-------------~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~ 80 (309)
+++++|+++ ++ +--|++...|- . .+...+++..+++++||+++|+.|.|.+++.+
T Consensus 25 eVv~vDid~--~K----V~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~----- 93 (414)
T COG1004 25 EVVCVDIDE--SK----VELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDGS----- 93 (414)
T ss_pred eEEEEeCCH--HH----HHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCC-----
Confidence 578999972 33 33445444331 1 12566677777899999999999999877433
Q ss_pred HHhHHHHHHHHHHHhhhcCCCcEEEEecC-chhH
Q 021646 81 SKNVSIYKAQASALEKHAAPNCKVLVVAN-PANT 113 (309)
Q Consensus 81 ~~N~~i~~~i~~~i~~~~~p~~~vivvsn-Pvd~ 113 (309)
.+...+...++.|.++-...++|++=|. |+=.
T Consensus 94 -aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt 126 (414)
T COG1004 94 -ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT 126 (414)
T ss_pred -ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence 3567777778888887632244444343 6533
No 46
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.52 E-value=2.4 Score=36.52 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=51.0
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCC--------------CcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPL--------------LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 80 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~--------------~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~ 80 (309)
..+-+|++ + ..+..|+....+. ..++...++..+++++||+++|+.+.|..++.+
T Consensus 25 ~V~g~D~~--~----~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~----- 93 (185)
T PF03721_consen 25 QVIGVDID--E----EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDEDGS----- 93 (185)
T ss_dssp EEEEE-S---H----HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBETTTS-----
T ss_pred EEEEEeCC--h----HHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccccCC-----
Confidence 45678886 2 2345566555432 124566666677799999999999988765422
Q ss_pred HHhHHHHHHHHHHHhhhcCCCcEEEEecC-chh----HHHHHHHHH
Q 021646 81 SKNVSIYKAQASALEKHAAPNCKVLVVAN-PAN----TNALILKEF 121 (309)
Q Consensus 81 ~~N~~i~~~i~~~i~~~~~p~~~vivvsn-Pvd----~~t~~~~~~ 121 (309)
-+...+...+..|.++..++.+|++=|. |+- .+.+++.+.
T Consensus 94 -~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 94 -PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp -BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 1233444555555555544556666554 543 455777777
No 47
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=82.27 E-value=11 Score=33.43 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=45.8
Q ss_pred hCCCCceEEEeeeecCCCC-CCCCceEEEEeEEe-cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021646 237 LGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTC-EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLA 304 (309)
Q Consensus 237 ~~~~~~~v~~~sv~~~g~y-gi~~~v~~s~Pv~~-~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~ 304 (309)
.++ .+.++-++|.-+|.- ++|.|.++=+||++ ++|+.-+.. .+|.+.-...++.....-+-.++++
T Consensus 147 ~~~-~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~~~e~L~veAa 214 (232)
T PF11975_consen 147 YND-KPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVKAYERLTVEAA 214 (232)
T ss_dssp HHS-SEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 354 778888999988864 67899999999987 999997654 5899988887776666555555544
No 48
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=76.49 E-value=17 Score=36.06 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=38.5
Q ss_pred eeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec-Cchh
Q 021646 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPAN 112 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs-nPvd 112 (309)
.+.+++..+++++||+++|+.+.|..++.+..+ -.-+..-+...+..|.++..++.+|++=| -|+-
T Consensus 66 l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 66 LFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred EEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 555655566899999999999988754210000 01234456677777777764343333333 4553
No 49
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.04 E-value=33 Score=30.00 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=42.4
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCc--ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHH
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLK--GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 92 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~--~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~ 92 (309)
++.++|.+ .++++..+.++.+....... ++.. .+..+++.++|+||++.-.+ .+.++..
T Consensus 26 ~V~v~~r~--~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aDvVilavp~~----------------~~~~~l~ 86 (219)
T TIGR01915 26 KIIIGSRD--LEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRADVVILAVPWD----------------HVLKTLE 86 (219)
T ss_pred EEEEEEcC--HHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCCEEEEECCHH----------------HHHHHHH
Confidence 45678886 45566655555442211111 1222 24567789999999986421 1122222
Q ss_pred HHhhhcCCCcEEEEecCchh
Q 021646 93 ALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 93 ~i~~~~~p~~~vivvsnPvd 112 (309)
.+..+- ++.+||-++||++
T Consensus 87 ~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 87 SLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred HHHHhc-cCCEEEEeccCce
Confidence 333332 2457888999974
No 50
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.86 E-value=15 Score=33.42 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=28.3
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEE
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKV 104 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~v 104 (309)
+++..+ +++++++||+||++.- .+..+-+++...+.++++|++++
T Consensus 70 ~l~~~~-~~~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 70 RITGTT-DLDDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred CeEEeC-CHHHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 445454 4567999999999862 12333345555577777667655
No 51
>PRK09458 pspB phage shock protein B; Provisional
Probab=65.68 E-value=13 Score=27.15 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHhhhhC
Q 021646 281 KVDEFSRAKMD---ATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 281 ~L~~~E~~~l~---~s~~~i~~~i~~~~~~~~ 309 (309)
.||++|+++|+ +.|+.+++.++.-|++||
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 58999977766 778889999999998885
No 52
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.41 E-value=23 Score=32.41 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=29.8
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEE
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKV 104 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~v 104 (309)
+++..++..+++++||+||.+.- .+.+..+.+...+.++++|++++
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE
Confidence 45556555567899999999853 22445555556677777566643
No 53
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=65.29 E-value=22 Score=29.41 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=41.8
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCC------CcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHH
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPL------LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIY 87 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~------~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~ 87 (309)
.++.|++.+ ++.++ .+.-.|..... ..++.++++..+++++||+||++.= +.-.
T Consensus 23 ~~V~l~~~~--~~~~~--~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP----------------s~~~ 82 (157)
T PF01210_consen 23 HEVTLWGRD--EEQIE--EINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP----------------SQAH 82 (157)
T ss_dssp EEEEEETSC--HHHHH--HHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-----------------GGGH
T ss_pred CEEEEEecc--HHHHH--HHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc----------------HHHH
Confidence 567789886 22222 23333332111 2356677778889999999999742 2334
Q ss_pred HHHHHHHhhhcCCCcEEEEec
Q 021646 88 KAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 88 ~~i~~~i~~~~~p~~~vivvs 108 (309)
+++..++..|-.++..++.++
T Consensus 83 ~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 83 REVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp HHHHHHHTTTSHTT-EEEETS
T ss_pred HHHHHHHhhccCCCCEEEEec
Confidence 566667777764444455444
No 54
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.36 E-value=27 Score=32.05 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=28.8
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhc-CCCcEEEEecC
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA-APNCKVLVVAN 109 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~-~p~~~vivvsn 109 (309)
+++..++ ++++++||+||=+.- ++.++=+.+-..+.+++ +|++++ +||
T Consensus 72 ~l~~~~~-~~~~~~~d~ViEav~--------------E~~~~K~~l~~~l~~~~~~~~~il--~sn 120 (286)
T PRK07819 72 RLRFTTD-LGDFADRQLVIEAVV--------------EDEAVKTEIFAELDKVVTDPDAVL--ASN 120 (286)
T ss_pred CeEeeCC-HHHhCCCCEEEEecc--------------cCHHHHHHHHHHHHHhhCCCCcEE--EEC
Confidence 4555544 578999999887641 22333333444777876 567644 444
No 55
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.12 E-value=32 Score=31.37 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=16.8
Q ss_pred ceeecCChhhhcCCCcEEEEeCC
Q 021646 45 GVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag 67 (309)
+++..++..+++++||+||.+..
T Consensus 68 ~i~~~~~~~~~~~~aD~Vi~avp 90 (288)
T PRK09260 68 RLSYSLDLKAAVADADLVIEAVP 90 (288)
T ss_pred CeEEeCcHHHhhcCCCEEEEecc
Confidence 34555555678999999998753
No 56
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=63.04 E-value=35 Score=27.59 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=40.5
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechh
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 136 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~l 136 (309)
.++|+|++++- ...-.+.++.+++.+++.+.++..+++.+++.+---.. ++. -|++ +-|+.||.+
T Consensus 52 ~~adii~iSsl------------~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~-l~~-~Gvd-~~~~~gt~~ 116 (132)
T TIGR00640 52 ADVHVVGVSSL------------AGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDE-LKE-MGVA-EIFGPGTPI 116 (132)
T ss_pred cCCCEEEEcCc------------hhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHH-HHH-CCCC-EEECCCCCH
Confidence 58999999763 23445678888999988764455666666654432222 333 3653 336777755
Q ss_pred H
Q 021646 137 D 137 (309)
Q Consensus 137 d 137 (309)
.
T Consensus 117 ~ 117 (132)
T TIGR00640 117 P 117 (132)
T ss_pred H
Confidence 4
No 57
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=62.41 E-value=67 Score=31.02 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=32.6
Q ss_pred eeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
++..++..+++++||+||++...+..++.+ -+...+......+.++..++.+++..|
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~~------~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCCC------cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 444444456689999999998877543211 133344444455555543455555544
No 58
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=59.19 E-value=11 Score=27.94 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 021646 280 LKVDEFSRAKMDATAEELAEE 300 (309)
Q Consensus 280 ~~L~~~E~~~l~~s~~~i~~~ 300 (309)
++|||+||+.|++..++++++
T Consensus 1 M~LSe~E~r~L~eiEr~L~~~ 21 (82)
T PF11239_consen 1 MPLSEHEQRRLEEIERQLRAD 21 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 479999999999998888653
No 59
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.72 E-value=34 Score=28.65 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCc
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnP 110 (309)
...|+|+|..|..---.....+.+. +-+++++..+.+.. |++.|++++.|
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~---~~l~~li~~i~~~~-~~~~iiv~~~p 115 (191)
T cd01836 66 TRFDVAVISIGVNDVTHLTSIARWR---KQLAELVDALRAKF-PGARVVVTAVP 115 (191)
T ss_pred CCCCEEEEEecccCcCCCCCHHHHH---HHHHHHHHHHHhhC-CCCEEEEECCC
Confidence 4789999998865322112233344 34566777777765 78888888854
No 60
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.62 E-value=62 Score=29.74 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=14.9
Q ss_pred eeecCChhhhcCCCcEEEEeC
Q 021646 46 VVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVita 66 (309)
++..++..+.+++||+||++.
T Consensus 67 i~~~~~~~~~~~~aDlVi~av 87 (311)
T PRK06130 67 IRMEAGLAAAVSGADLVIEAV 87 (311)
T ss_pred eEEeCCHHHHhccCCEEEEec
Confidence 344444555689999999985
No 61
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.46 E-value=31 Score=31.52 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=14.7
Q ss_pred eeecCChhhhcCCCcEEEEeC
Q 021646 46 VVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVita 66 (309)
++..+ +++++++||+||.+.
T Consensus 72 i~~~~-~~~~~~~aD~Vieav 91 (292)
T PRK07530 72 ISTAT-DLEDLADCDLVIEAA 91 (292)
T ss_pred eEeeC-CHHHhcCCCEEEEcC
Confidence 44444 456799999999985
No 62
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=57.00 E-value=21 Score=32.33 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=45.1
Q ss_pred ChhhhcCCCcEEEEeCCCCC----------------CCCC---CHH-----HHHHHhHHHHHHHHHHHhhhcCCCcEEEE
Q 021646 51 DVVEACKDVNIAVMVGGFPR----------------KEGM---ERK-----DVMSKNVSIYKAQASALEKHAAPNCKVLV 106 (309)
Q Consensus 51 ~~~~~l~~aDiVVitag~~~----------------~~~~---sr~-----~~~~~N~~i~~~i~~~i~~~~~p~~~viv 106 (309)
...+.+++||++|||-|... .|+. .+. --.+++...++.+...|.+.+ |+..||+
T Consensus 94 ~~~~~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~n-P~~kiil 172 (251)
T PF08885_consen 94 EVREALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSIN-PDIKIIL 172 (251)
T ss_pred HHHHHHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhC-CCceEEE
Confidence 45667999999999998531 1111 111 124578888999999999997 7988877
Q ss_pred ecCchhHHH
Q 021646 107 VANPANTNA 115 (309)
Q Consensus 107 vsnPvd~~t 115 (309)
---||=.+.
T Consensus 173 TVSPVrl~~ 181 (251)
T PF08885_consen 173 TVSPVRLIA 181 (251)
T ss_pred Eeccchhhc
Confidence 777995433
No 63
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=55.16 E-value=29 Score=29.54 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=31.7
Q ss_pred cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC
Q 021646 44 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 109 (309)
Q Consensus 44 ~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn 109 (309)
.+++..++ .+++.+||+||=+. .++.++=+++-..+.++++|+++ ++||
T Consensus 65 ~~i~~~~d-l~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasn 113 (180)
T PF02737_consen 65 ARISFTTD-LEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASN 113 (180)
T ss_dssp HTEEEESS-GGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE-
T ss_pred hhcccccC-HHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEec
Confidence 35666655 45566999987653 24566667788889999988874 4554
No 64
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.29 E-value=44 Score=31.42 Aligned_cols=55 Identities=5% Similarity=0.119 Sum_probs=34.6
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHH
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t 115 (309)
+++..++..+++++||+|+-+.- +|.++=+.+-..+.++++|++ |+.||-.-+..
T Consensus 70 ~i~~~~~l~~av~~aDlViEavp--------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~ 124 (321)
T PRK07066 70 RLRFVATIEACVADADFIQESAP--------------EREALKLELHERISRAAKPDA--IIASSTSGLLP 124 (321)
T ss_pred hceecCCHHHHhcCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCH
Confidence 44555566678899999887531 233333444467778886676 66776554433
No 65
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=54.17 E-value=43 Score=27.88 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=32.3
Q ss_pred CCcEEEEeCCCCCCC--CC---CHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCc
Q 021646 58 DVNIAVMVGGFPRKE--GM---ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 58 ~aDiVVitag~~~~~--~~---sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnP 110 (309)
..|+|||..|..-.- +. ...+.+..| ++.++..+.+.. |++.++++|.|
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~ii~~t~~ 116 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKEN---LRKIVSHLKSLS-PKTKVILITPP 116 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHH---HHHHHHHHHhhC-CCCeEEEeCCC
Confidence 799999999864311 11 224445444 667777777765 68888888854
No 66
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.49 E-value=39 Score=31.52 Aligned_cols=52 Identities=8% Similarity=0.157 Sum_probs=31.6
Q ss_pred ceeecCC--hhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh
Q 021646 45 GVVATTD--VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 45 ~~~~~~~--~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd 112 (309)
+++..++ .++++++||+||-+.- +|..+=+.+-..+.+.+.|++++ +||-.-
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~il--aSntS~ 117 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAII--ASTTST 117 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcccc
Confidence 4555543 5677999999887742 23333334444477888778755 666433
No 67
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.87 E-value=51 Score=26.53 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=32.5
Q ss_pred CCCcEEEEeCCCCCC-CCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC
Q 021646 57 KDVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 109 (309)
Q Consensus 57 ~~aDiVVitag~~~~-~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn 109 (309)
.+.|+|||..|..-- .+.+ ...-.+-++.++..+...+ |++.+++++-
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~~~i~~i~~~~-p~~~ii~~~~ 87 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRD----PDTAPDRLRALIDQMRAAN-PDVKIIVATL 87 (157)
T ss_pred CCCCEEEEeccCcccccCCC----HHHHHHHHHHHHHHHHHhC-CCeEEEEEeC
Confidence 588999999996532 1222 2334456777888888886 7888777663
No 68
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.98 E-value=83 Score=24.73 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechh
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 136 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~l 136 (309)
.++|+|.++... ....+.+++++..+++.++++..+++.+++.+-....+. . .|++ .-|+.||..
T Consensus 49 ~~~d~V~iS~~~------------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~-~-~G~d-~~~~~~~~~ 113 (122)
T cd02071 49 EDVDVIGLSSLS------------GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLK-E-MGVA-EIFGPGTSI 113 (122)
T ss_pred cCCCEEEEcccc------------hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH-H-CCCC-EEECCCCCH
Confidence 589999997642 344566788899999987556666666654332222222 2 3653 225666654
Q ss_pred H
Q 021646 137 D 137 (309)
Q Consensus 137 d 137 (309)
+
T Consensus 114 ~ 114 (122)
T cd02071 114 E 114 (122)
T ss_pred H
Confidence 4
No 69
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=49.10 E-value=58 Score=29.76 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=12.8
Q ss_pred ChhhhcCCCcEEEEeC
Q 021646 51 DVVEACKDVNIAVMVG 66 (309)
Q Consensus 51 ~~~~~l~~aDiVVita 66 (309)
+.++++++||+||.+.
T Consensus 76 ~~~~~~~~aD~Vieav 91 (295)
T PLN02545 76 TNLEELRDADFIIEAI 91 (295)
T ss_pred CCHHHhCCCCEEEEcC
Confidence 3457799999999975
No 70
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=48.24 E-value=64 Score=29.43 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=43.4
Q ss_pred CChhhhcCCCcEEEEeCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 50 TDVVEACKDVNIAVMVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 50 ~~~~~~l~~aDiVVitag~~~~~~-~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
....++++++|+|+-+|......+ .++..+.+.|..=.+.+...+.+.+ -.. +|..|
T Consensus 58 ~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~-Vkr-lVytS 115 (280)
T PF01073_consen 58 ESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG-VKR-LVYTS 115 (280)
T ss_pred HHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcC-CCE-EEEEc
Confidence 456788999999999998643333 5678899999999999999999875 342 44444
No 71
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.39 E-value=81 Score=24.20 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHhhhcCCCcEEEEe-cCc-hhHHHHHHHHHCCCCCCC-cE-EEechhHHHHHHHHHHHHhCCCCCCeeeeEEEe
Q 021646 88 KAQASALEKHAAPNCKVLVV-ANP-ANTNALILKEFAPSIPAK-NI-TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 163 (309)
Q Consensus 88 ~~i~~~i~~~~~p~~~vivv-snP-vd~~t~~~~~~~~~~~~~-~i-g~gt~lds~R~~~~la~~l~v~~~~v~~~vV~G 163 (309)
.++...+.++. |+.+.+-+ ..| .+.+..++... +...++ ++ .+|. .-|..-...+.+..+ +. ++|.|
T Consensus 41 ~~l~~~~~~~~-pd~V~iS~~~~~~~~~~~~l~~~~-k~~~p~~~iv~GG~-~~t~~~~~~l~~~~~-----~D-~vv~G 111 (121)
T PF02310_consen 41 EELVEALRAER-PDVVGISVSMTPNLPEAKRLARAI-KERNPNIPIVVGGP-HATADPEEILREYPG-----ID-YVVRG 111 (121)
T ss_dssp HHHHHHHHHTT-CSEEEEEESSSTHHHHHHHHHHHH-HTTCTTSEEEEEES-SSGHHHHHHHHHHHT-----SE-EEEEE
T ss_pred HHHHHHHhcCC-CcEEEEEccCcCcHHHHHHHHHHH-HhcCCCCEEEEECC-chhcChHHHhccCcC-----cc-eecCC
Confidence 67777788876 78766665 333 33444555444 344444 44 3332 324444444543333 44 44578
Q ss_pred ecCCceee
Q 021646 164 NHSSTQYP 171 (309)
Q Consensus 164 ehG~s~vp 171 (309)
| |+..++
T Consensus 112 e-gE~~~~ 118 (121)
T PF02310_consen 112 E-GEEAFP 118 (121)
T ss_dssp T-TSSHHH
T ss_pred C-hHHhhc
Confidence 7 665444
No 72
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=47.35 E-value=42 Score=30.84 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=33.3
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEe--CCCC
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMV--GGFP 69 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVit--ag~~ 69 (309)
+|.++|++ .+++++.+.++.+... . ..+....+.++.+.++|+||-| .|..
T Consensus 153 ~I~I~nR~--~~ka~~la~~l~~~~~-~-~~~~~~~~~~~~~~~aDiVInaTp~Gm~ 205 (284)
T PRK12549 153 RLTIFDVD--PARAAALADELNARFP-A-ARATAGSDLAAALAAADGLVHATPTGMA 205 (284)
T ss_pred EEEEECCC--HHHHHHHHHHHHhhCC-C-eEEEeccchHhhhCCCCEEEECCcCCCC
Confidence 58899997 5788888888865421 1 1222222335568899999998 4554
No 73
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=47.27 E-value=12 Score=30.93 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=44.1
Q ss_pred ecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCC
Q 021646 48 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA 127 (309)
Q Consensus 48 ~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~ 127 (309)
.....++.+.+||+|+||+..-- +.|-++++ +++.+...+++.+ |--.+.+ +.+.++.-
T Consensus 52 ~~~~~~~~l~~aD~viiTGsTlv--N~Ti~~iL---------------~~~~~~~~vil~G-pS~~~~P---~~l~~~Gv 110 (147)
T PF04016_consen 52 PDEDAEEILPWADVVIITGSTLV--NGTIDDIL---------------ELARNAREVILYG-PSAPLHP---EALFDYGV 110 (147)
T ss_dssp EGGGHHHHGGG-SEEEEECHHCC--TTTHHHHH---------------HHTTTSSEEEEES-CCGGS-G---GGGCCTT-
T ss_pred CHHHHHHHHccCCEEEEEeeeee--cCCHHHHH---------------HhCccCCeEEEEe-cCchhhH---HHHHhCCC
Confidence 44567888999999999986432 23433333 2343345566666 5444443 11124445
Q ss_pred CcEEEechhHHHHHHHHHHH
Q 021646 128 KNITCLTRLDHNRAMGQISE 147 (309)
Q Consensus 128 ~~ig~gt~lds~R~~~~la~ 147 (309)
..+++.-..|-.++.+.+++
T Consensus 111 ~~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 111 TYVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp SEEEEEEES-HHHHHHHHCT
T ss_pred CEEEEEEEeCHHHHHHHHHc
Confidence 56666667788888777754
No 74
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=45.97 E-value=76 Score=28.96 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=26.8
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC
Q 021646 53 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 109 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn 109 (309)
.+++++||+||.+... +.++.+++...+.+++.|+++++..|.
T Consensus 80 ~~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 80 YESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred HHHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 4678999999998631 223334455557777766775544443
No 75
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=45.88 E-value=42 Score=31.29 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=34.3
Q ss_pred eEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 13 PVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
.-++.++|++ .++++..+-++++ . ...+....+..+++++||||+.+..
T Consensus 153 i~~v~v~~r~--~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 153 IKEVRVYSRS--PERAEAFAARLRD-L---GVPVVAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -SEEEEE-SS--HHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSSEEEE---
T ss_pred ceEEEEEccC--hhHHHHHHHhhcc-c---cccceeccchhhhcccCCEEEEccC
Confidence 3368899997 5678888888887 2 3456666677899999998876443
No 76
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=45.83 E-value=23 Score=33.90 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=38.1
Q ss_pred ecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCch
Q 021646 48 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 111 (309)
Q Consensus 48 ~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPv 111 (309)
..+.+|..++++|.|| +..-.|.++.+++...|.+.|+|++++...|.-.
T Consensus 59 ~~~~Dy~~~~~~dmvi--------------eav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~ 108 (380)
T KOG1683|consen 59 VETLDYTGFANADMVI--------------EAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSL 108 (380)
T ss_pred ccccccccccccceec--------------cchhhhHHHHHHHHHHHHhhcCCcceeeeccccC
Confidence 3456788999999981 1234689999999999999999898766555433
No 77
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=45.64 E-value=22 Score=37.56 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=34.4
Q ss_pred hhcCCCcEEEEeCCCCC---CCCCCHHH--HHHHhHHHHHHHHHHHhhhcCCCcEEEEe-cCchhH
Q 021646 54 EACKDVNIAVMVGGFPR---KEGMERKD--VMSKNVSIYKAQASALEKHAAPNCKVLVV-ANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~---~~~~sr~~--~~~~N~~i~~~i~~~i~~~~~p~~~vivv-snPvd~ 113 (309)
+..++||+||++.|... .++.+|.+ +-..-. +++..+.+.+ |+.++++. ++|+++
T Consensus 497 ~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~----~Li~~v~~~~-~~vVvVl~~g~P~~l 557 (765)
T PRK15098 497 QAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQR----DLIAALKATG-KPLVLVLMNGRPLAL 557 (765)
T ss_pred HHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHH----HHHHHHHHhC-cCEEEEEeCCceeec
Confidence 44689999999998653 34455553 222233 4445555556 56666555 789987
No 78
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.62 E-value=48 Score=27.54 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=33.4
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCch
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 111 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPv 111 (309)
.+.|+|||..|..-- .... .-.+-++.++..+.+.+ |++.+++++.|.
T Consensus 56 ~~pd~vii~~G~ND~---~~~~---~~~~~~~~~i~~i~~~~-p~~~iil~~~~~ 103 (177)
T cd01844 56 VPADLYIIDCGPNIV---GAEA---MVRERLGPLVKGLRETH-PDTPILLVSPRY 103 (177)
T ss_pred cCCCEEEEEeccCCC---ccHH---HHHHHHHHHHHHHHHHC-cCCCEEEEecCC
Confidence 378999999987532 1111 23456778888999987 788888888543
No 79
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=44.61 E-value=38 Score=25.26 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=25.3
Q ss_pred CceEEEEeEE-ecCCcEEEeCCCCCCHHHHHHHHHHH
Q 021646 259 EGLIYSFPVT-CEKGEWSIVKGLKVDEFSRAKMDATA 294 (309)
Q Consensus 259 ~~v~~s~Pv~-~~~Gv~~i~~~~~L~~~E~~~l~~s~ 294 (309)
+|.|++.|-. .++|..+-+- .|+|.+-+++|++++
T Consensus 41 ~GlFVaMPs~k~~~g~y~Di~-~Pitke~Re~i~~aV 76 (84)
T PF04026_consen 41 KGLFVAMPSRKSKDGEYKDIC-HPITKEFREQIEEAV 76 (84)
T ss_dssp TEEEEE--EEE-TTS-EEESE-EESSHHHHHHHHHHH
T ss_pred CCcEEECCCcCCCCCCEEEEE-EECCHHHHHHHHHHH
Confidence 4689999986 5888887665 689999999998765
No 80
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=44.59 E-value=64 Score=30.17 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=52.5
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCC------C
Q 021646 51 DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP------S 124 (309)
Q Consensus 51 ~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~------~ 124 (309)
.++.++++||+||=.. .+|.++=+++-..+.++++|++ |++||-.-+...-+.+.++ |
T Consensus 75 ~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~~rper~iG 138 (307)
T COG1250 75 TDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEALKRPERFIG 138 (307)
T ss_pred CchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHHhCCchhEEE
Confidence 4566899999976442 3577777888888999997787 5677755432222222211 1
Q ss_pred ---C-CCCc-----E--EEechhHHHHHHHHHHHHhC
Q 021646 125 ---I-PAKN-----I--TCLTRLDHNRAMGQISERLK 150 (309)
Q Consensus 125 ---~-~~~~-----i--g~gt~lds~R~~~~la~~l~ 150 (309)
| |+.. + |--|.-++...-..++++++
T Consensus 139 ~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~ig 175 (307)
T COG1250 139 LHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIG 175 (307)
T ss_pred EeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 1 2221 2 23366677777777888877
No 81
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=44.28 E-value=44 Score=31.03 Aligned_cols=50 Identities=6% Similarity=0.092 Sum_probs=36.6
Q ss_pred eEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 13 PVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
.-++.++|++ .+++...+-++.+. ....+....+..+++.+||||+-+..
T Consensus 142 i~~v~v~~r~--~~~a~~f~~~~~~~---~~~~v~~~~~~~eav~~aDIV~taT~ 191 (301)
T PRK06407 142 PKRIRVYSRN--FDHARAFAERFSKE---FGVDIRPVDNAEAALRDADTITSITN 191 (301)
T ss_pred CCEEEEECCC--HHHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCCEEEEecC
Confidence 3478999997 56788888777752 12346666678889999999886544
No 82
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=43.51 E-value=43 Score=28.61 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=32.2
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+++||.+|+.-.... +. -+. + ++.+.+.+.+++ |+..+++++|-.|+
T Consensus 75 ~~~~ad~illVfD~t~-----~~-Sf~-~---~~~w~~~i~~~~-~~~piilVGNK~DL 122 (189)
T cd04121 75 YSRGAQGIILVYDITN-----RW-SFD-G---IDRWIKEIDEHA-PGVPKILVGNRLHL 122 (189)
T ss_pred HhcCCCEEEEEEECcC-----HH-HHH-H---HHHHHHHHHHhC-CCCCEEEEEECccc
Confidence 3579999999866542 11 121 1 234566666776 68889999999997
No 83
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=42.88 E-value=68 Score=26.29 Aligned_cols=48 Identities=8% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCcEEEEeCCCCCC-CCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC
Q 021646 57 KDVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 109 (309)
Q Consensus 57 ~~aDiVVitag~~~~-~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn 109 (309)
...|+|+|..|..-- .+.+ .+.-.+-++.++..+.+.+ |++.+++++.
T Consensus 49 ~~p~~vvi~~G~ND~~~~~~----~~~~~~~~~~lv~~i~~~~-~~~~iil~~~ 97 (171)
T cd04502 49 YQPRRVVLYAGDNDLASGRT----PEEVLRDFRELVNRIRAKL-PDTPIAIISI 97 (171)
T ss_pred CCCCEEEEEEecCcccCCCC----HHHHHHHHHHHHHHHHHHC-CCCcEEEEEe
Confidence 378999999887532 2333 2233455777888888887 6888887774
No 84
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=42.68 E-value=84 Score=25.72 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC-ch
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-PA 111 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn-Pv 111 (309)
.+.|+|+|..|..--......+.+.+ -++.+...+.+.. |++.+++++- |+
T Consensus 50 ~~pd~v~i~~G~ND~~~~~~~~~~~~---~~~~l~~~~~~~~-p~~~vi~~~~~p~ 101 (174)
T cd01841 50 KNPSKVFLFLGTNDIGKEVSSNQFIK---WYRDIIEQIREEF-PNTKIYLLSVLPV 101 (174)
T ss_pred cCCCEEEEEeccccCCCCCCHHHHHH---HHHHHHHHHHHHC-CCCEEEEEeeCCc
Confidence 46899999988754221112233443 4566777777775 6888887774 44
No 85
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=42.64 E-value=1.1e+02 Score=28.81 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHhhhcCCCcEEEEecCchhHH--HHHHHHHCCCCCCCcEEEechhHHH-HHHHHHHHHhCCCCCCeeeeEE
Q 021646 90 QASALEKHAAPNCKVLVVANPANTN--ALILKEFAPSIPAKNITCLTRLDHN-RAMGQISERLKVHVSDVKNVII 161 (309)
Q Consensus 90 i~~~i~~~~~p~~~vivvsnPvd~~--t~~~~~~~~~~~~~~ig~gt~lds~-R~~~~la~~l~v~~~~v~~~vV 161 (309)
....|.+.+ |+ .|+++++|..+- ..-..+- =|++-.|+||-+.-+++ |...++.+++--...++..+++
T Consensus 67 ~~~eI~~ln-pd-~VLIIGGp~AVs~~yE~~Lks-~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv 138 (337)
T COG2247 67 VLDEIIELN-PD-LVLIIGGPIAVSPNYENALKS-LGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVV 138 (337)
T ss_pred HHHHHHhhC-Cc-eEEEECCCCcCChhHHHHHHh-CCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEE
Confidence 345667777 68 577788775442 2222332 27888899988888854 5666676666666676776655
No 86
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=42.41 E-value=3e+02 Score=26.47 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=34.0
Q ss_pred eeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec-CchhHHHHHH
Q 021646 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANTNALIL 118 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs-nPvd~~t~~~ 118 (309)
++...+..++.++||+||++...+....... -+...++..+..|.+.. |+.+|++-| =|....-.+.
T Consensus 61 l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~-~g~lVV~~STv~pgtt~~l~ 128 (388)
T PRK15057 61 FNATLDKNEAYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEIN-PYAVMVIKSTVPVGFTAAMH 128 (388)
T ss_pred EEEecchhhhhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcC-CCCEEEEeeecCCchHHHHH
Confidence 3333344566799999999987653221111 12233333334444432 455555444 3655444443
No 87
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=40.96 E-value=62 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=32.8
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+.+||++|+.-.... + +-+. | +.+.+.+.+.+++ |+..+++++|-.|+
T Consensus 73 ~~~~ad~~ilvyDit~-----~-~Sf~-~--~~~~w~~~i~~~~-~~~piilVgNK~DL 121 (182)
T cd04172 73 SYPDSDAVLICFDISR-----P-ETLD-S--VLKKWKGEIQEFC-PNTKMLLVGCKSDL 121 (182)
T ss_pred hcCCCCEEEEEEECCC-----H-HHHH-H--HHHHHHHHHHHHC-CCCCEEEEeEChhh
Confidence 4689999988766432 2 2222 1 2245556667776 68889999999997
No 88
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=40.93 E-value=95 Score=25.47 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=30.7
Q ss_pred CcEEEEeCCCCCCC---CCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCch
Q 021646 59 VNIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 111 (309)
Q Consensus 59 aDiVVitag~~~~~---~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPv 111 (309)
.|+|||..|..-.. +.+..+ +. .-++.++..+.+.. |++.+++++.|.
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~~-~~---~~~~~li~~i~~~~-p~~~i~~~~~~~ 106 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGED-FT---NAYVEFIEELRKRY-PDAPIVLMLGPM 106 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHHH-HH---HHHHHHHHHHHHHC-CCCeEEEEecCc
Confidence 89999999975421 113333 33 34566677777776 788777776554
No 89
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=40.66 E-value=50 Score=29.77 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=39.5
Q ss_pred cCCCCeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCC
Q 021646 8 LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRK 71 (309)
Q Consensus 8 ~~~~~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~ 71 (309)
||- .+|+|++.... +..++.=+...+.--.-+..+..+..++++|+|+|+-|.+..+.
T Consensus 28 fGl---~eL~LV~Pr~~---~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v~aTtar~r~ 85 (242)
T COG0565 28 FGL---SELRLVNPRAG---LDEEARALAAGARDILENAKIVDTLEEALADCDLVVATTARSRD 85 (242)
T ss_pred CCc---ceEEEECCCCC---CCHHHHHHhccchhhhccCeeecCHHHHhcCCCEEEEeccccCc
Confidence 663 37999999742 34455555544432234556777899999999999999876553
No 90
>PRK07680 late competence protein ComER; Validated
Probab=40.32 E-value=1.4e+02 Score=26.92 Aligned_cols=74 Identities=9% Similarity=0.196 Sum_probs=39.9
Q ss_pred eEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHH
Q 021646 13 PVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 92 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~ 92 (309)
+..+.++|.+ .+++.. +.+. . .++....+..+.+.+||+||++.- |. ...++++
T Consensus 27 ~~~v~v~~r~--~~~~~~----~~~~-~---~g~~~~~~~~~~~~~aDiVilav~----p~--------~~~~vl~---- 80 (273)
T PRK07680 27 PSQLTITNRT--PAKAYH----IKER-Y---PGIHVAKTIEEVISQSDLIFICVK----PL--------DIYPLLQ---- 80 (273)
T ss_pred cceEEEECCC--HHHHHH----HHHH-c---CCeEEECCHHHHHHhCCEEEEecC----HH--------HHHHHHH----
Confidence 4467889986 233322 2211 0 123444455566889999999862 21 1122333
Q ss_pred HHhhhcCCCcEEEEecCchh
Q 021646 93 ALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 93 ~i~~~~~p~~~vivvsnPvd 112 (309)
.+..+-.++.+|+-+++++.
T Consensus 81 ~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 81 KLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHHhhcCCCCEEEEECCCCC
Confidence 33333224567888888774
No 91
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=39.92 E-value=2.3e+02 Score=27.66 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=32.2
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCC----------cceeecCChhhhcCCCcEEEEeCCCCCCC
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLL----------KGVVATTDVVEACKDVNIAVMVGGFPRKE 72 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~----------~~~~~~~~~~~~l~~aDiVVitag~~~~~ 72 (309)
.+++.+|++ ++ .+..|.....+.. .....+ ...+.+++||+++++-+.|.+.
T Consensus 29 ~~V~g~D~~--~~----~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~~~~~~advvii~Vptp~~~ 90 (425)
T PRK15182 29 RQVVGFDVN--KK----RILELKNGVDVNLETTEEELREARYLKFT-SEIEKIKECNFYIITVPTPINT 90 (425)
T ss_pred CEEEEEeCC--HH----HHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCHHHHcCCCEEEEEcCCCCCC
Confidence 567899997 23 3455554443210 122233 3456789999999999987643
No 92
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=39.58 E-value=2.7e+02 Score=26.43 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=26.2
Q ss_pred EEEEEecCCccchh-hHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 15 ILHMLDIEPAAEAL-NGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 15 ~l~L~D~~~~~~~~-~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
++.++|++ .+.+ ...+..+.+. +.....+..++.++||+||++-.
T Consensus 45 eV~V~Drn--rsa~e~e~~e~Laea------GA~~AaS~aEAAa~ADVVIL~LP 90 (341)
T TIGR01724 45 DVVLAEPN--REFMSDDLWKKVEDA------GVKVVSDDKEAAKHGEIHVLFTP 90 (341)
T ss_pred EEEEEeCC--hhhhhhhhhHHHHHC------CCeecCCHHHHHhCCCEEEEecC
Confidence 46788886 2222 1222334432 23344456788899999998753
No 93
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=38.79 E-value=93 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCcEEEEeCCCCCCC-CCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 58 DVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 58 ~aDiVVitag~~~~~-~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
..|+|||..|..--. +.+..+ + ..-++.++..+.+.. |++.|++++
T Consensus 89 ~pd~VvI~~G~ND~~~~~~~~~-~---~~~l~~ii~~l~~~~-P~~~Iil~~ 135 (214)
T cd01820 89 NPKVVVLLIGTNNIGHTTTAEE-I---AEGILAIVEEIREKL-PNAKILLLG 135 (214)
T ss_pred CCCEEEEEecccccCCCCCHHH-H---HHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 589999999976321 122222 2 344667777788876 788877776
No 94
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.78 E-value=1.1e+02 Score=25.24 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCCCCCC--CCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC
Q 021646 57 KDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 109 (309)
Q Consensus 57 ~~aDiVVitag~~~~~--~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn 109 (309)
...|+|+|.-|..-.- .....+.+..| ++.++..+.+.. |++.+++++.
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~---l~~li~~i~~~~-~~~~iil~t~ 116 (188)
T cd01827 66 FNPNIVIIKLGTNDAKPQNWKYKDDFKKD---YETMIDSFQALP-SKPKIYICYP 116 (188)
T ss_pred cCCCEEEEEcccCCCCCCCCccHHHHHHH---HHHHHHHHHHHC-CCCeEEEEeC
Confidence 3679999999875321 11223344444 567777777775 7887777774
No 95
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=38.69 E-value=61 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCCHHHHHH---HHHHHHHHHHHHHHHhhhhC
Q 021646 280 LKVDEFSRAK---MDATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 280 ~~L~~~E~~~---l~~s~~~i~~~i~~~~~~~~ 309 (309)
-.||++|+++ |.+.++.+++.++.-+++|+
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588888754 55667888888888888875
No 96
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.95 E-value=33 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 83 NVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 83 N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
...-+++++.+|..||.-++-||+++|.+|.
T Consensus 108 Sf~svqdw~tqIktysw~naqvilvgnKCDm 138 (193)
T KOG0093|consen 108 SFNSVQDWITQIKTYSWDNAQVILVGNKCDM 138 (193)
T ss_pred HHHHHHHHHHHheeeeccCceEEEEecccCC
Confidence 3456889999999999989999999999985
No 97
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=37.89 E-value=71 Score=26.75 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=33.1
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+++||++|+.-.... +.. +. .+.+.+.+.+.+++ |+..+++++|-.|+
T Consensus 69 ~~~~a~~~ilvfdit~-----~~S-f~---~~~~~w~~~i~~~~-~~~~iilVgnK~DL 117 (178)
T cd04131 69 CYPDSDAVLICFDISR-----PET-LD---SVLKKWRGEIQEFC-PNTKVLLVGCKTDL 117 (178)
T ss_pred hcCCCCEEEEEEECCC-----hhh-HH---HHHHHHHHHHHHHC-CCCCEEEEEEChhh
Confidence 3689999988866532 211 22 22345566677777 68889999999997
No 98
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.11 E-value=1.2e+02 Score=24.74 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=31.0
Q ss_pred CCCcEEEEeCCCCCC-CCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCc
Q 021646 57 KDVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 57 ~~aDiVVitag~~~~-~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnP 110 (309)
...|+||+..|..-. .+.+ .+.+. +-+..++..+.+.. |++.|++++-|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~-~~~~~---~~l~~li~~~~~~~-~~~~vi~~~~~ 96 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTS-DEDIV---ANYRTILEKLRKHF-PNIKIVVQSIL 96 (169)
T ss_pred cCCCEEEEEeeccCCCCCCC-HHHHH---HHHHHHHHHHHHHC-CCCeEEEEecC
Confidence 467999999996532 2222 23343 33566666777765 68888888743
No 99
>PLN03080 Probable beta-xylosidase; Provisional
Probab=37.07 E-value=37 Score=35.95 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=33.4
Q ss_pred hhcCCCcEEEEeCCCCC---CCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec-CchhH
Q 021646 54 EACKDVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA-NPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~---~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs-nPvd~ 113 (309)
+..++||+||+..|... .++.+|.++.-- .--.+++..+.+.+++..++++.+ +|+++
T Consensus 483 ~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp--~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l 544 (779)
T PLN03080 483 AIAKRADFVVVVAGLDLSQETEDHDRVSLLLP--GKQMDLISSVASVSKKPVVLVLTGGGPVDV 544 (779)
T ss_pred HHhccCCEEEEEeCCCccccccCCCcccccCC--ccHHHHHHHHHhhcCCCEEEEEeCCceeec
Confidence 45789999999988543 244566543211 112355556666553345545444 79987
No 100
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=36.73 E-value=64 Score=33.99 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=52.6
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh----HHHHHHHH
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN----TNALILKE 120 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd----~~t~~~~~ 120 (309)
+++..+ +++++++||+||=+. .+|.++=+++-..+.++++|++ |++||-.. -++..+.+
T Consensus 402 ~i~~~~-~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~~~~ 464 (737)
T TIGR02441 402 NLTPTL-DYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIAAVSSR 464 (737)
T ss_pred CeEEeC-CHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCC
Confidence 455554 567899999977442 3466666778888889997776 45676443 33332211
Q ss_pred --------HCCCCCCCc-----E--EEechhHHHHHHHHHHHHhCC
Q 021646 121 --------FAPSIPAKN-----I--TCLTRLDHNRAMGQISERLKV 151 (309)
Q Consensus 121 --------~~~~~~~~~-----i--g~gt~lds~R~~~~la~~l~v 151 (309)
++ .|++. | |..|.-++.-.-..+++++|-
T Consensus 465 p~r~ig~Hff--~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk 508 (737)
T TIGR02441 465 PEKVIGMHYF--SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGK 508 (737)
T ss_pred ccceEEEecc--CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 11 13321 2 334666666656667788874
No 101
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=36.49 E-value=1.2e+02 Score=26.69 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEecC
Q 021646 84 VSIYKAQASALEKHAAPNCKVLVVAN 109 (309)
Q Consensus 84 ~~i~~~i~~~i~~~~~p~~~vivvsn 109 (309)
..-++.+...|++.. |++.|++++-
T Consensus 130 ~~~l~~~l~~i~~~~-p~a~I~~~gy 154 (259)
T cd01823 130 GARLKAVLDRIRERA-PNARVVVVGY 154 (259)
T ss_pred HHHHHHHHHHHHhhC-CCcEEEEecc
Confidence 355777788888876 7998888884
No 102
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=36.26 E-value=61 Score=25.99 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=34.3
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..+.++|.+|++-.... + ....-++.+.+.+..+.+++..+++++|-.|+
T Consensus 67 ~~~~~~~~~ii~fd~~~-----~-----~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~ 116 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTD-----E-----ESFENLKKWLEEIQKYKPEDIPIIVVGNKSDL 116 (162)
T ss_dssp HHHTTESEEEEEEETTB-----H-----HHHHTHHHHHHHHHHHSTTTSEEEEEEETTTG
T ss_pred ccccccccccccccccc-----c-----ccccccccccccccccccccccceeeeccccc
Confidence 34778999999865432 1 23344557788888887335788888888886
No 103
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=36.15 E-value=1.2e+02 Score=30.14 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=15.5
Q ss_pred eeecCChhhhcCCCcEEEEeC
Q 021646 46 VVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVita 66 (309)
++..++..+++++||+|+.+.
T Consensus 68 i~~~~~~~ea~~~aD~Vieav 88 (495)
T PRK07531 68 LTFCASLAEAVAGADWIQESV 88 (495)
T ss_pred eEeeCCHHHHhcCCCEEEEcC
Confidence 555555667899999988764
No 104
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=35.83 E-value=64 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=28.8
Q ss_pred CceEEEEeEE-ecCCcEEEeCCCCCCHHHHHHHHHHH
Q 021646 259 EGLIYSFPVT-CEKGEWSIVKGLKVDEFSRAKMDATA 294 (309)
Q Consensus 259 ~~v~~s~Pv~-~~~Gv~~i~~~~~L~~~E~~~l~~s~ 294 (309)
+|.|++.|-. ..+|..+-+- .|+|.+-+++|+.++
T Consensus 41 ~GlFVaMPs~k~~~g~y~DI~-~Pit~e~Re~i~~aV 76 (94)
T PRK13259 41 NGLFIAMPSKRTPDGEFRDIA-HPINSDTREKIQDAI 76 (94)
T ss_pred CCeEEECcCcCCCCCcEEEEE-ccCCHHHHHHHHHHH
Confidence 5789999986 5788777665 699999999998765
No 105
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=35.76 E-value=1.6e+02 Score=23.81 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHCCCCCCCcE----EEechhHHHHHHHHHHHHhCC
Q 021646 111 ANTNALILKEFAPSIPAKNI----TCLTRLDHNRAMGQISERLKV 151 (309)
Q Consensus 111 vd~~t~~~~~~~~~~~~~~i----g~gt~lds~R~~~~la~~l~v 151 (309)
.+.|..++.+. |+|.++| -+-++.+++++-..+-++.++
T Consensus 56 a~~~~~~l~~~--gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~ 98 (155)
T PF02698_consen 56 AEAMRDYLIEL--GVPEERIILEPKSTNTYENARFSKRLLKERGW 98 (155)
T ss_dssp HHHHHHHHHHT-----GGGEEEE----SHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHhc--ccchheeEccCCCCCHHHHHHHHHHHHHhhcC
Confidence 45677777775 8998885 233678888876666666666
No 106
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.59 E-value=1.2e+02 Score=24.94 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCCcEEEEeCCCCCCC--CCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCc
Q 021646 57 KDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 57 ~~aDiVVitag~~~~~--~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnP 110 (309)
...|+|+|..|..-.. +.+. +.+ .+-++.++..+.+.. |++.|++++-|
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~~~-~~~---~~~~~~li~~i~~~~-~~~~iv~~~~~ 105 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQLNA-SEY---RQQLREFIKRLRQIL-PNASILLVGPP 105 (189)
T ss_pred CCCCEEEEECCCcccccCCCCH-HHH---HHHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence 5789999999976321 1222 223 345667777777775 78888888854
No 107
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=35.51 E-value=74 Score=29.56 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=57.2
Q ss_pred CeEEEEEEecCCccchhhHHHHHHhhc-cCCCC--------cceeecCChhhhcC--CCcEEEEeCCCCCCC--CCCHHH
Q 021646 12 QPVILHMLDIEPAAEALNGVKMELIDA-AFPLL--------KGVVATTDVVEACK--DVNIAVMVGGFPRKE--GMERKD 78 (309)
Q Consensus 12 ~~~~l~L~D~~~~~~~~~g~~~DL~~~-~~~~~--------~~~~~~~~~~~~l~--~aDiVVitag~~~~~--~~sr~~ 78 (309)
.|-.|+|+|.+ +..+.-...+|..- ..+.. ..+.-.......++ +.|+|+=+|..-.-| ..+..+
T Consensus 22 ~p~~lil~d~~--E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~e 99 (293)
T PF02719_consen 22 GPKKLILFDRD--ENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFE 99 (293)
T ss_dssp B-SEEEEEES---HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHH
T ss_pred CCCeEEEeCCC--hhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHH
Confidence 46689999997 55777777777421 11111 11111112234456 999999988753211 247788
Q ss_pred HHHHhHHHHHHHHHHHhhhcCCCcEEEEec----CchhHHH
Q 021646 79 VMSKNVSIYKAQASALEKHAAPNCKVLVVA----NPANTNA 115 (309)
Q Consensus 79 ~~~~N~~i~~~i~~~i~~~~~p~~~vivvs----nPvd~~t 115 (309)
.++.|+-=-+.++....+++- +-+|.+-| ||.++|-
T Consensus 100 av~tNv~GT~nv~~aa~~~~v-~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 100 AVKTNVLGTQNVAEAAIEHGV-ERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp HHHHHCHHHHHHHHHHHHTT--SEEEEEEECGCSS--SHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEccccccCCCCcHHH
Confidence 899999999999999999874 65556554 6777754
No 108
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=35.30 E-value=82 Score=23.09 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=36.7
Q ss_pred CeEEEEEE-ecCCccchhhHHHHHHhhccCCCCcceeecC-ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHH
Q 021646 12 QPVILHML-DIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKA 89 (309)
Q Consensus 12 ~~~~l~L~-D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~-~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~ 89 (309)
.+.++.++ +.+ .+++...+.++. +.... +..+.+.+||+||++.- | +.+.+
T Consensus 24 ~~~~v~~~~~r~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~advvilav~----p------------~~~~~ 76 (96)
T PF03807_consen 24 KPHEVIIVSSRS--PEKAAELAKEYG---------VQATADDNEEAAQEADVVILAVK----P------------QQLPE 76 (96)
T ss_dssp -GGEEEEEEESS--HHHHHHHHHHCT---------TEEESEEHHHHHHHTSEEEE-S-----G------------GGHHH
T ss_pred CceeEEeeccCc--HHHHHHHHHhhc---------cccccCChHHhhccCCEEEEEEC----H------------HHHHH
Confidence 45677655 886 344433332222 22222 46778889999999862 2 11223
Q ss_pred HHHHHhhhcCCCcEEEEecCc
Q 021646 90 QASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 90 i~~~i~~~~~p~~~vivvsnP 110 (309)
++..+.... ++.++|-++||
T Consensus 77 v~~~i~~~~-~~~~vis~~ag 96 (96)
T PF03807_consen 77 VLSEIPHLL-KGKLVISIAAG 96 (96)
T ss_dssp HHHHHHHHH-TTSEEEEESTT
T ss_pred HHHHHhhcc-CCCEEEEeCCC
Confidence 334443333 46677777665
No 109
>PRK07589 ornithine cyclodeaminase; Validated
Probab=35.11 E-value=80 Score=30.03 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=36.0
Q ss_pred eEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 13 PVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
.-++.++|++ .+++...+.++++. .-.+....+..+++++||||+.+..
T Consensus 154 i~~V~v~~r~--~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 154 IEEIRLYDID--PAATAKLARNLAGP----GLRIVACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred ceEEEEEeCC--HHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEecC
Confidence 4568899997 56777888888752 2245556677889999999987554
No 110
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=35.06 E-value=2e+02 Score=24.54 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCCCCCCcEEEechhH-HHHHHHHHHHHhCCCCCCeeeeEEE
Q 021646 84 VSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD-HNRAMGQISERLKVHVSDVKNVIIW 162 (309)
Q Consensus 84 ~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~~~~~~ig~gt~ld-s~R~~~~la~~l~v~~~~v~~~vV~ 162 (309)
.+-+++....++..+ .+++|+||-...=+..+.+.. |+| +..++.=. ..-|+.++ ++++++|.+| ++|
T Consensus 48 tpe~~~W~~e~k~~g---i~v~vvSNn~e~RV~~~~~~l-~v~---fi~~A~KP~~~~fr~Al-~~m~l~~~~v--vmV- 116 (175)
T COG2179 48 TPELRAWLAELKEAG---IKVVVVSNNKESRVARAAEKL-GVP---FIYRAKKPFGRAFRRAL-KEMNLPPEEV--VMV- 116 (175)
T ss_pred CHHHHHHHHHHHhcC---CEEEEEeCCCHHHHHhhhhhc-CCc---eeecccCccHHHHHHHH-HHcCCChhHE--EEE-
Confidence 356677777888764 579999996555444444432 333 32333223 44478888 7789999997 433
Q ss_pred eecCCceeeecCCce
Q 021646 163 GNHSSTQYPDVNHAT 177 (309)
Q Consensus 163 GehG~s~vp~~S~~~ 177 (309)
||+.+.+.-..+
T Consensus 117 ---GDqL~TDVlggn 128 (175)
T COG2179 117 ---GDQLFTDVLGGN 128 (175)
T ss_pred ---cchhhhhhhccc
Confidence 555555543333
No 111
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=34.74 E-value=76 Score=27.41 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=30.7
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..+++||.+|+.-.... + +-++ ++ +.+...+.+++.++..+++++|-.|+
T Consensus 68 ~y~~~ad~iIlVfDvtd-----~-~Sf~-~l---~~w~~~i~~~~~~~~piilVgNK~DL 117 (202)
T cd04120 68 AYYRSAKGIILVYDITK-----K-ETFD-DL---PKWMKMIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred HHhcCCCEEEEEEECcC-----H-HHHH-HH---HHHHHHHHHhCCCCCcEEEEEECccc
Confidence 34789999999865432 1 1122 22 22334455554456778999999997
No 112
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=34.54 E-value=1.7e+02 Score=27.66 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=40.4
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC-----chhHHHHHHH
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-----PANTNALILK 119 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn-----Pvd~~t~~~~ 119 (309)
++..+++..+++++||+||+.-- .+-++++++++..+-.++.+++.++- ....|..++.
T Consensus 58 ~l~at~Dl~~a~~~ad~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~ 121 (329)
T COG0240 58 NLKATTDLAEALDGADIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIE 121 (329)
T ss_pred ccccccCHHHHHhcCCEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHH
Confidence 44556788899999999999742 23455556666545446777887772 3445666666
Q ss_pred HH
Q 021646 120 EF 121 (309)
Q Consensus 120 ~~ 121 (309)
+.
T Consensus 122 e~ 123 (329)
T COG0240 122 EE 123 (329)
T ss_pred HH
Confidence 66
No 113
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.10 E-value=1.4e+02 Score=22.98 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=34.1
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCC-CcEEEEecCchhHHHHH
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNALI 117 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p-~~~vivvsnPvd~~t~~ 117 (309)
.+.|+|.++.... .+.+.+++++..+++.+ | +..+++.++|.......
T Consensus 49 ~~pdvV~iS~~~~------------~~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~ 97 (119)
T cd02067 49 EDADAIGLSGLLT------------THMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKF 97 (119)
T ss_pred cCCCEEEEecccc------------ccHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHH
Confidence 5789999876422 34566788888888875 6 77788888887654433
No 114
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=32.99 E-value=86 Score=29.37 Aligned_cols=49 Identities=18% Similarity=0.042 Sum_probs=34.4
Q ss_pred eEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 13 PVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
.-.+.++|++ .++++..+-++.+. ...+....+..+++.+||||+.+..
T Consensus 153 ~~~v~V~~r~--~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 153 LEEVSVYCRT--PSTREKFALRASDY----EVPVRAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCC--HHHHHHHHHHHHhh----CCcEEEeCCHHHHhccCCEEEEecC
Confidence 4468899997 56777766666532 2235556677888999999998653
No 115
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=32.98 E-value=16 Score=32.13 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=32.1
Q ss_pred hhhcCCCcEEEEeCCCCCCCCC--------CHHHHHHHhHHHHHHHHHHHhhhcCCCcE-EEEecCchhH
Q 021646 53 VEACKDVNIAVMVGGFPRKEGM--------ERKDVMSKNVSIYKAQASALEKHAAPNCK-VLVVANPANT 113 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~--------sr~~~~~~N~~i~~~i~~~i~~~~~p~~~-vivvsnPvd~ 113 (309)
.+..++||+||+..|.+.-++. +|.+ +.- -.--++++..+.+.+ ++.+ ++..+||.++
T Consensus 80 ~~~~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~-~~l-~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l 146 (227)
T PF01915_consen 80 VAAAKEADVVIVFVGRPSGEGNDNNTEGESDRSD-LAL-PANQQELIKAVAAAG-KKVIVVVNSGNPYDL 146 (227)
T ss_dssp HHHHHCSSEEEEEEETTSBCCCSS-EETTGSCSS-TBC-CCHHHHHHHHHHHHH-SCEEEEEE-SSGGCG
T ss_pred HHHhhcCCEEEEeccccccccccccccccCCccc-ccc-hhhHHHHHHHHHHhc-CCeEEEEecCCcccc
Confidence 4557899999999883322222 1111 010 122355666677776 3544 4455799987
No 116
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=32.78 E-value=1.2e+02 Score=31.72 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=55.4
Q ss_pred cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH-HHHHHHHHC
Q 021646 44 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-NALILKEFA 122 (309)
Q Consensus 44 ~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~-~t~~~~~~~ 122 (309)
.++++.+ +++++++||+||=+. .+|.++=+++-..+.++++|++ |++||-.-+ .+.++...
T Consensus 376 ~~i~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~- 437 (708)
T PRK11154 376 ALISGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAA- 437 (708)
T ss_pred hcEEEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhc-
Confidence 3566665 457899999987543 3567777888888999998786 446664433 22222221
Q ss_pred C------C----CCCCc-----E--EEechhHHHHHHHHHHHHhCCCC
Q 021646 123 P------S----IPAKN-----I--TCLTRLDHNRAMGQISERLKVHV 153 (309)
Q Consensus 123 ~------~----~~~~~-----i--g~gt~lds~R~~~~la~~l~v~~ 153 (309)
. | .|++. | |-.|.-++.-.-..+++++|..|
T Consensus 438 ~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p 485 (708)
T PRK11154 438 ARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (708)
T ss_pred CcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 1 0 13331 2 34566666666666677777543
No 117
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.22 E-value=1.8e+02 Score=23.64 Aligned_cols=67 Identities=9% Similarity=-0.009 Sum_probs=41.5
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh------HHHHHHHHHCCCCCCCcE
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN------TNALILKEFAPSIPAKNI 130 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd------~~t~~~~~~~~~~~~~~i 130 (309)
.++|+|.++.-.. .+...++++...+++.++++..+++.+++.. -.-..+.+. |++ ..|
T Consensus 53 ~~~d~V~lS~~~~------------~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~--G~~-~vf 117 (137)
T PRK02261 53 TDADAILVSSLYG------------HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM--GFD-RVF 117 (137)
T ss_pred cCCCEEEEcCccc------------cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc--CCC-EEE
Confidence 4789988876432 3456677888889888756777888888731 111233332 542 235
Q ss_pred EEechhHH
Q 021646 131 TCLTRLDH 138 (309)
Q Consensus 131 g~gt~lds 138 (309)
+.||.+|.
T Consensus 118 ~~~~~~~~ 125 (137)
T PRK02261 118 PPGTDPEE 125 (137)
T ss_pred CcCCCHHH
Confidence 66776664
No 118
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=32.22 E-value=2.7e+02 Score=25.43 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=29.7
Q ss_pred eeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh
Q 021646 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 46 ~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd 112 (309)
.....+..+.+.+||+||++...+ .+.++...+..+..|+.+++.++|-++
T Consensus 59 ~~~~~~~~~~~~~~D~vi~~v~~~----------------~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 59 LRATTDLAEALADADLILVAVPSQ----------------ALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred eEEeCCHHHHHhCCCEEEEeCCHH----------------HHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 444444455778999999986411 123333445554445677777776443
No 119
>PF15605 Toxin_52: Putative toxin 52
Probab=32.12 E-value=40 Score=26.07 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=33.3
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 021646 270 EKGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 309 (309)
Q Consensus 270 ~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~i~~~~~~~~ 309 (309)
+..+|..+.++.|++..++.++....+--..+++++++|+
T Consensus 63 ~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~~ 102 (103)
T PF15605_consen 63 KRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFFP 102 (103)
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456665667889999999999999998899999999885
No 120
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.82 E-value=93 Score=22.72 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHH---HHHHHHHHHHHHhhhhC
Q 021646 281 KVDEFSRAKMDA---TAEELAEEKTLAYSCLN 309 (309)
Q Consensus 281 ~L~~~E~~~l~~---s~~~i~~~i~~~~~~~~ 309 (309)
.|+++|+++|++ .++.+++.++.-|++|+
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478888766655 56788888888888875
No 121
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.70 E-value=1.1e+02 Score=28.90 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=38.7
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH-----HHHHHH
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-----NALILK 119 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~-----~t~~~~ 119 (309)
++...++..+++.++|+||++.- ...++++.++++.+-.|+..++.++|-++. +..++.
T Consensus 64 ~i~~t~d~~~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~ 127 (341)
T PRK12439 64 TLRATTDFAEAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIE 127 (341)
T ss_pred CeEEECCHHHHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHH
Confidence 34455566677899999999853 123444555555554456778888887664 455555
Q ss_pred HH
Q 021646 120 EF 121 (309)
Q Consensus 120 ~~ 121 (309)
+.
T Consensus 128 ~~ 129 (341)
T PRK12439 128 EV 129 (341)
T ss_pred HH
Confidence 55
No 122
>PRK06823 ornithine cyclodeaminase; Validated
Probab=31.66 E-value=1e+02 Score=28.83 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=33.4
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
-++.++|++ .++++..+-.+++. ...+....+..+++.+||||+.+..
T Consensus 154 ~~v~v~~r~--~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 154 RQLWVWGRS--ETALEEYRQYAQAL----GFAVNTTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CEEEEECCC--HHHHHHHHHHHHhc----CCcEEEECCHHHHhcCCCEEEEecC
Confidence 468899997 56777666555532 2245556667888999999987654
No 123
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=31.58 E-value=50 Score=30.58 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=37.6
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHH
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 121 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~ 121 (309)
++.+.+++.++.+++|++|.--= -| .....|++++++.|.+ +++ ++|-+-+-+..+++.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftP----fG-------~~q~~Iikkii~~lpE----gAI---I~~tCTIpt~~ly~i 184 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLP----KG-------NKQPDIIKKFIDDIPE----GAI---VTHACTIPTTKFAKI 184 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcC----CC-------CCchHHHHHHHhhCCC----CCE---EeccccCChHHHHHH
Confidence 67788899999999999887421 12 1235677777777654 343 455555544455544
No 124
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=30.96 E-value=65 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=17.7
Q ss_pred CcceeecCChhhhcCCCcEEEEeC
Q 021646 43 LKGVVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 43 ~~~~~~~~~~~~~l~~aDiVVita 66 (309)
...+.++.+..+++++||||..+.
T Consensus 58 g~~i~~~~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 58 GGKITITDDIEEALKGADVVYTDR 81 (158)
T ss_dssp TTEEEEESSHHHHHTT-SEEEEES
T ss_pred CCCeEEEeCHHHhcCCCCEEEEcC
Confidence 346777777889999999976664
No 125
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.66 E-value=1.5e+02 Score=25.85 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=34.7
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHH
Q 021646 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115 (309)
Q Consensus 56 l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t 115 (309)
..||+..|++=.+. ..+- -.-.++....+.+..+|+.++.+++|-+|+..
T Consensus 75 yRgA~AAivvYDit------~~~S----F~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 75 YRGANAAIVVYDIT------DEES----FEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ecCCcEEEEEEecc------cHHH----HHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 46777777665432 2222 33456677777788888999999999999866
No 126
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=30.52 E-value=2e+02 Score=26.08 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=28.9
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~ 117 (309)
+...++|+||++.-.+. +.++...+..+-.++.+|+.+.|.++....+
T Consensus 64 ~~~~~~d~vilavk~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l 111 (305)
T PRK12921 64 ELTGPFDLVILAVKAYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL 111 (305)
T ss_pred HccCCCCEEEEEecccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCChHHHH
Confidence 33489999999864321 2223334444433567788889998754433
No 127
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=30.15 E-value=1.4e+02 Score=28.41 Aligned_cols=48 Identities=31% Similarity=0.482 Sum_probs=29.7
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
++...++..+++.+||+||++. | ...+++++.++..+-.++.+++.++
T Consensus 69 ~i~at~dl~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 69 NLVAVPDLVEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred CeEEECCHHHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 4556667778899999999883 2 2334455555555433445566665
No 128
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=29.97 E-value=1.1e+02 Score=27.19 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=35.8
Q ss_pred hhhhcCCCcEEEEeCCCCCCCC----CCHHHHHHHhHHHHHHHHHHHhhhcC
Q 021646 52 VVEACKDVNIAVMVGGFPRKEG----MERKDVMSKNVSIYKAQASALEKHAA 99 (309)
Q Consensus 52 ~~~~l~~aDiVVitag~~~~~~----~sr~~~~~~N~~i~~~i~~~i~~~~~ 99 (309)
..+.+.++|+||-+++.+...+ ....++.+.|....+.+...+.+++.
T Consensus 51 ~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 51 ESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred hhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 4567889999999998654222 13356777899999999999988763
No 129
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=29.64 E-value=2.8e+02 Score=24.58 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=40.0
Q ss_pred CeEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHH
Q 021646 12 QPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQA 91 (309)
Q Consensus 12 ~~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~ 91 (309)
++-++.++|++ .+++ .++.+- + ++....+..+..++||+||++-. | ..+.++.
T Consensus 8 ~~~~I~v~~R~--~e~~----~~l~~~---~--g~~~~~~~~e~~~~aDiIiLaVk-P---------------~~i~~vl 60 (245)
T TIGR00112 8 AAYDIIVINRS--PEKL----AALAKE---L--GIVASSDAQEAVKEADVVFLAVK-P---------------QDLEEVL 60 (245)
T ss_pred CCCeEEEEcCC--HHHH----HHHHHH---c--CcEEeCChHHHHhhCCEEEEEeC-H---------------HHHHHHH
Confidence 46678899996 3333 333321 1 13333445556689999999864 1 2233344
Q ss_pred HHHhhhcCCCcEEEEecCchhH
Q 021646 92 SALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 92 ~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..+..+-.++.+|+-+.+.+.+
T Consensus 61 ~~l~~~~~~~~~ivS~~agi~~ 82 (245)
T TIGR00112 61 SELKSEKGKDKLLISIAAGVTL 82 (245)
T ss_pred HHHhhhccCCCEEEEecCCCCH
Confidence 4444322234566666666543
No 130
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=1e+02 Score=28.54 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcCC-CcEEEEecCchhHHHHHHHHHCCCCCCCc-EEEechhHHHHHHHHHHHHhCCCCC
Q 021646 85 SIYKAQASALEKHAAP-NCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVS 154 (309)
Q Consensus 85 ~i~~~i~~~i~~~~~p-~~~vivvsnPvd~~t~~~~~~~~~~~~~~-ig~gt~lds~R~~~~la~~l~v~~~ 154 (309)
..+-++..++..|.+. ..+||-+||-+|++-+.+.+- +.++++- |-.-+..--+|.-..=+++++++++
T Consensus 293 RTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRS-GRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~D 363 (424)
T KOG0652|consen 293 RTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRS-GRLDRKIEFPHPNEEARARILQIHSRKMNVSDD 363 (424)
T ss_pred HHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhc-ccccccccCCCCChHHHHHHHHHhhhhcCCCCC
Confidence 4566778888888632 356899999999999988874 4465443 3333455567777788899888765
No 131
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=28.62 E-value=1.3e+02 Score=30.23 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=28.8
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd 112 (309)
+++..+ +++++++||+||-+.- ++..+=+.+-..+.++++|++ |++||-..
T Consensus 72 ~i~~~~-~~~~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~--IlasnTSt 122 (503)
T TIGR02279 72 RLIPVT-DLHALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADT--IIASNTSS 122 (503)
T ss_pred ccEEeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCe--EEEECCCC
Confidence 455554 4577899999888742 122222222334777886665 35555433
No 132
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=28.53 E-value=1.8e+02 Score=30.61 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=52.4
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHHHCCC
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS 124 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~~~~~ 124 (309)
+++..+ +++++++||+||=+. .++.++=+++-..+.++++|++ |++||-..+...-+...++.
T Consensus 380 ~i~~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~~~~~ 442 (714)
T TIGR02437 380 GITPTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAKALKR 442 (714)
T ss_pred CeEEeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCC
Confidence 455554 467899999988653 2455666777788888897776 55777443322222222111
Q ss_pred ---------C-CCCc-----E--EEechhHHHHHHHHHHHHhCC
Q 021646 125 ---------I-PAKN-----I--TCLTRLDHNRAMGQISERLKV 151 (309)
Q Consensus 125 ---------~-~~~~-----i--g~gt~lds~R~~~~la~~l~v 151 (309)
| |++. | |..|.-++.-.-..+++++|-
T Consensus 443 p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk 486 (714)
T TIGR02437 443 PENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGK 486 (714)
T ss_pred cccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCC
Confidence 1 3332 2 334666666555566777774
No 133
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=28.43 E-value=3.6e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=25.3
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeC
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVita 66 (309)
++.++|.++ +.+.-...+... ..++...++..+.+++||+||++.
T Consensus 45 ~V~v~Dr~~--~~l~~~~~~~l~-----~~Gi~~asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 45 DVVLAEPNR--SILSEELWKKVE-----DAGVKVVSDDAEAAKHGEIHILFT 89 (342)
T ss_pred eEEEEECCH--HHhhHHHHHHHH-----HCCCEEeCCHHHHHhCCCEEEEEC
Confidence 578999863 222111122111 123445555667789999999883
No 134
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=28.32 E-value=95 Score=29.35 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=36.3
Q ss_pred eEEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 13 PVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 13 ~~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
.-+|.++|++ .+.++..+-+++.--. ..+....+..+++.+||||+-+.-
T Consensus 155 ~~~I~i~~r~--~~~~e~~a~~l~~~~~---~~v~a~~s~~~av~~aDiIvt~T~ 204 (330)
T COG2423 155 IREIRVYSRD--PEAAEAFAARLRKRGG---EAVGAADSAEEAVEGADIVVTATP 204 (330)
T ss_pred ccEEEEEcCC--HHHHHHHHHHHHhhcC---ccceeccCHHHHhhcCCEEEEecC
Confidence 4478999997 5678888888876432 245555566889999999887643
No 135
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=28.19 E-value=1.6e+02 Score=23.33 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 53 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
...+++||.+|++-..... .. + ..+..+...+..+..++..++++.|-.|.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~---~s---~----~~~~~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 67 SSYYRGAVGALLVYDITNR---ES---F----ENLKNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred HHHhCCCCEEEEEEECCCH---HH---H----HHHHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 3446788888887654321 11 1 22233445555554356678888888884
No 136
>PRK06199 ornithine cyclodeaminase; Validated
Probab=27.97 E-value=1.2e+02 Score=29.13 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=35.7
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
-++.++|++ .++++..+-++.+-. +....+.+..+..+++.+||||+-+..
T Consensus 182 ~~V~v~~r~--~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 182 DTIKIKGRG--QKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred cEEEEECCC--HHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 368899997 567888888887531 111246666677889999999886443
No 137
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=27.77 E-value=1.8e+02 Score=23.94 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCCcEEEEeCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCc
Q 021646 57 KDVNIAVMVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~-~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnP 110 (309)
.+.|+|||.-|..-... ....+.+..+ ++.+...+.. |++.+++++.|
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~---~~~~i~~i~~---~~~~vil~~~~ 114 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRAD---LEEAVRRLRA---AGARVVVFTIP 114 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHH---HHHHHHHHHh---CCCEEEEecCC
Confidence 58899999988653221 2223334433 4555666662 46677777754
No 138
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=27.73 E-value=1.3e+02 Score=25.15 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=33.5
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 114 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~ 114 (309)
.+++||.+|+.-.... |.. +. | +.+.+.+.+.+++ ++..+++++|-.|+.
T Consensus 69 ~~~~a~~~ilvyd~~~-----~~S-f~-~--~~~~w~~~i~~~~-~~~piilvgnK~Dl~ 118 (176)
T cd04133 69 SYRGADVFVLAFSLIS-----RAS-YE-N--VLKKWVPELRHYA-PNVPIVLVGTKLDLR 118 (176)
T ss_pred hcCCCcEEEEEEEcCC-----HHH-HH-H--HHHHHHHHHHHhC-CCCCEEEEEeChhhc
Confidence 4789999999876542 222 32 1 1244556677776 588899999999983
No 139
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=27.59 E-value=1.9e+02 Score=29.00 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=14.9
Q ss_pred ceeecCChhhhcCCCcEEEEeC
Q 021646 45 GVVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVita 66 (309)
+++..+ +++++++||+||-+.
T Consensus 74 ~i~~~~-~~~~~~~aDlViEav 94 (507)
T PRK08268 74 RLRPVE-ALADLADCDLVVEAI 94 (507)
T ss_pred CeEEeC-CHHHhCCCCEEEEcC
Confidence 355554 457799999988764
No 140
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.56 E-value=1.5e+02 Score=28.49 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=30.6
Q ss_pred cceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhh--hcCCCcEEEEec
Q 021646 44 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK--HAAPNCKVLVVA 108 (309)
Q Consensus 44 ~~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~--~~~p~~~vivvs 108 (309)
.++...++..+++++||+||++.- .+.+++++.+++. +-.++.++|.++
T Consensus 79 ~ni~~tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 79 DNIVAVSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred CceEEecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 456666777788999999888741 2345556666665 332354555554
No 141
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.40 E-value=2.3e+02 Score=25.48 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=28.8
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 117 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~ 117 (309)
+...++|+||++..... +.++.+.+..+-.++..|+...|.++....+
T Consensus 62 ~~~~~~d~vila~k~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l 109 (304)
T PRK06522 62 AELGPQDLVILAVKAYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL 109 (304)
T ss_pred hHcCCCCEEEEeccccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence 34589999999975321 2223333444323567788899987654433
No 142
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=27.04 E-value=1.5e+02 Score=23.94 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=29.9
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..++++|.+|+.-.... + +-++ -+.++...+.....|+..+++++|-.|+
T Consensus 70 ~~~~~~~~~ilv~d~~~-----~-~s~~----~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 70 SYYRGAAGALMVYDITR-----R-STYN----HLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred HHhcCCCEEEEEEECCC-----H-HHHH----HHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 34678898888866432 1 1121 1233444454544456678888998886
No 143
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=27.03 E-value=1.9e+02 Score=30.35 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=35.6
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd 112 (309)
+++..+ +++++++||+||=+. .++.++=+++-.++.++++|++ |++||-.-
T Consensus 372 ~i~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~ 422 (699)
T TIGR02440 372 LITGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSS 422 (699)
T ss_pred CeEEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCC
Confidence 555654 457899999987653 2456666778888889997775 55676443
No 144
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=26.97 E-value=1.8e+02 Score=30.56 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=35.0
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd 112 (309)
+++..+ +++++++||+||=+. .++.++=+++-..+.++++|++ |++||-.-
T Consensus 380 ~i~~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSs 430 (715)
T PRK11730 380 SIRPTL-DYAGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTST 430 (715)
T ss_pred CeEEeC-CHHHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCC
Confidence 555554 568899999987553 2455666777788888897776 55777444
No 145
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=26.80 E-value=63 Score=29.92 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=36.3
Q ss_pred ceeecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHHHHHHH
Q 021646 45 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120 (309)
Q Consensus 45 ~~~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t~~~~~ 120 (309)
++.+.+++-++.+++|++|.--= -| .....|++++++.|.+ +++ ++|-+-+-+..+++
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftP----fG-------~~t~~Iikki~~~ipE----gAI---I~~tCTIpt~~ly~ 185 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLP----KG-------GMQPDIIEKFADDIKE----GAI---VTHACTIPTTKFAK 185 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecC----CC-------CCchHHHHHHHhhCCC----CCE---EeccccCCHHHHHH
Confidence 67788899999999999987421 12 1235677777777655 343 44444444444443
No 146
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=26.62 E-value=1.3e+02 Score=25.71 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=30.2
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+.+||++|+.-.... +.. +. |++ ..+...+.+++ ++..+++++|-.|+
T Consensus 84 ~~~~ad~iilv~d~t~-----~~S-f~-~~~--~~w~~~i~~~~-~~~piilvgNK~DL 132 (195)
T cd01873 84 AYGRSDVVLLCFSIAS-----PNS-LR-NVK--TMWYPEIRHFC-PRVPVILVGCKLDL 132 (195)
T ss_pred cCCCCCEEEEEEECCC-----hhH-HH-HHH--HHHHHHHHHhC-CCCCEEEEEEchhc
Confidence 3679999999876542 111 21 221 12334455666 57778899999997
No 147
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=25.95 E-value=1.4e+02 Score=24.31 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=30.2
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+.++|.+|+.-.... +. -+ .-++.+...+.+++ ++..+++++|..|.
T Consensus 69 ~~~~~d~~i~v~d~~~-----~~-s~----~~~~~~~~~i~~~~-~~~piiiv~nK~Dl 116 (166)
T cd00877 69 YYIGGQCAIIMFDVTS-----RV-TY----KNVPNWHRDLVRVC-GNIPIVLCGNKVDI 116 (166)
T ss_pred HhcCCCEEEEEEECCC-----HH-HH----HHHHHHHHHHHHhC-CCCcEEEEEEchhc
Confidence 3567888888654331 11 12 22345566666766 46778999999997
No 148
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=25.48 E-value=1.3e+02 Score=26.46 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=32.3
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 114 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~ 114 (309)
.+.++|++|+.-.... + +-+. + +.+.+.+.+..++ |+..+++++|-.|+-
T Consensus 69 ~~~~~d~illvfdis~-----~-~Sf~-~--i~~~w~~~~~~~~-~~~piiLVgnK~DL~ 118 (222)
T cd04173 69 AYPDSDAVLICFDISR-----P-ETLD-S--VLKKWQGETQEFC-PNAKVVLVGCKLDMR 118 (222)
T ss_pred hccCCCEEEEEEECCC-----H-HHHH-H--HHHHHHHHHHhhC-CCCCEEEEEECcccc
Confidence 4689999999876542 1 1222 1 1122334566676 688899999999973
No 149
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=25.45 E-value=1.4e+02 Score=25.77 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCcEEEE-eCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecC---chhHHHHHHHHHCCCCCCCcEEE
Q 021646 57 KDVNIAVM-VGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN---PANTNALILKEFAPSIPAKNITC 132 (309)
Q Consensus 57 ~~aDiVVi-tag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsn---Pvd~~t~~~~~~~~~~~~~~ig~ 132 (309)
+++|+|+| |+|...+. ....+-++++...+ . |.-+++|++- +-++. .+...+ ..++...+ .
T Consensus 82 ~~~D~vlIDT~Gr~~~d--------~~~~~el~~~~~~~---~-~~~~~LVlsa~~~~~~~~-~~~~~~-~~~~~~~l-I 146 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRD--------EELLEELKKLLEAL---N-PDEVHLVLSATMGQEDLE-QALAFY-EAFGIDGL-I 146 (196)
T ss_dssp TTSSEEEEEE-SSSSTH--------HHHHHHHHHHHHHH---S-SSEEEEEEEGGGGGHHHH-HHHHHH-HHSSTCEE-E
T ss_pred cCCCEEEEecCCcchhh--------HHHHHHHHHHhhhc---C-CccceEEEecccChHHHH-HHHHHh-hcccCceE-E
Confidence 56999999 88865311 11223333333333 3 4545555552 22333 222222 34555554 3
Q ss_pred echhHHHH
Q 021646 133 LTRLDHNR 140 (309)
Q Consensus 133 gt~lds~R 140 (309)
.|-+|+.+
T Consensus 147 lTKlDet~ 154 (196)
T PF00448_consen 147 LTKLDETA 154 (196)
T ss_dssp EESTTSSS
T ss_pred EEeecCCC
Confidence 67888644
No 150
>PTZ00099 rab6; Provisional
Probab=25.30 E-value=1.6e+02 Score=24.72 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=28.8
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+++||++|+.-.... +. -++. + ..+...+.+...++..+++++|-.|+
T Consensus 49 ~~~~ad~~ilv~D~t~-----~~-sf~~-~---~~w~~~i~~~~~~~~piilVgNK~DL 97 (176)
T PTZ00099 49 YIRDSAAAIVVYDITN-----RQ-SFEN-T---TKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred HhCCCcEEEEEEECCC-----HH-HHHH-H---HHHHHHHHHhcCCCCeEEEEEECccc
Confidence 3689999999876432 11 1221 1 23333333332257778899998887
No 151
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.24 E-value=2.9e+02 Score=27.14 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCcEEEE-eCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec---CchhHHHHHHHHHCCCCCCCcEEEe
Q 021646 58 DVNIAVM-VGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA---NPANTNALILKEFAPSIPAKNITCL 133 (309)
Q Consensus 58 ~aDiVVi-tag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs---nPvd~~t~~~~~~~~~~~~~~ig~g 133 (309)
+.|+|+| |+|... .+...+.++...+.... |+.+++|++ .+-| +..++.+| +.++...+ ..
T Consensus 320 ~~DvVLIDTaGRs~-----------kd~~lm~EL~~~lk~~~-PdevlLVLsATtk~~d-~~~i~~~F-~~~~idgl-I~ 384 (436)
T PRK11889 320 RVDYILIDTAGKNY-----------RASETVEEMIETMGQVE-PDYICLTLSASMKSKD-MIEIITNF-KDIHIDGI-VF 384 (436)
T ss_pred CCCEEEEeCccccC-----------cCHHHHHHHHHHHhhcC-CCeEEEEECCccChHH-HHHHHHHh-cCCCCCEE-EE
Confidence 5799999 777543 33445566666666654 676777665 2333 45577777 55666664 34
Q ss_pred chhHHH
Q 021646 134 TRLDHN 139 (309)
Q Consensus 134 t~lds~ 139 (309)
|=||+.
T Consensus 385 TKLDET 390 (436)
T PRK11889 385 TKFDET 390 (436)
T ss_pred EcccCC
Confidence 567743
No 152
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.11 E-value=1.9e+02 Score=23.67 Aligned_cols=49 Identities=10% Similarity=0.025 Sum_probs=30.5
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeecC----ChhhhcCCCcEEEEeCCCC
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT----DVVEACKDVNIAVMVGGFP 69 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~----~~~~~l~~aDiVVitag~~ 69 (309)
++++++... ..-+-.++-|..- ...++... +..+.+++|||||.+.|.+
T Consensus 30 ~v~VvGrs~--~vG~pla~lL~~~----gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 30 KVLVVGRSG--IVGAPLQCLLQRD----GATVYSCDWKTIQLQSKVHDADVVVVGSPKP 82 (140)
T ss_pred EEEEECCCc--hHHHHHHHHHHHC----CCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence 467788863 3334445555432 22333332 5677899999999999976
No 153
>PRK08618 ornithine cyclodeaminase; Validated
Probab=24.99 E-value=1.3e+02 Score=27.99 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=33.2
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCCC
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFP 69 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~~ 69 (309)
-++.++|.+ .++++..+-++.+. ....+....+..+.+.+||+||.+....
T Consensus 153 ~~v~v~~r~--~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 153 ERVRVYSRT--FEKAYAFAQEIQSK---FNTEIYVVNSADEAIEEADIIVTVTNAK 203 (325)
T ss_pred cEEEEECCC--HHHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence 468899997 46676666666532 1123444455677899999999876543
No 154
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.91 E-value=3.8e+02 Score=24.69 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=28.6
Q ss_pred ceeecCChhhhc-CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhh-hcCCCcEEEEecCch
Q 021646 45 GVVATTDVVEAC-KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK-HAAPNCKVLVVANPA 111 (309)
Q Consensus 45 ~~~~~~~~~~~l-~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~-~~~p~~~vivvsnPv 111 (309)
++...++..+.+ .++|+||++.-. .-++++.+.+.. +-.++..++.++|=.
T Consensus 57 ~i~~~~~~~~~~~~~~Dliiiavks----------------~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 57 NISVKSAIDEVLSDNATCIILAVPT----------------QQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CeEEeCCHHHHHhCCCCEEEEEeCH----------------HHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 444555555555 589999998531 122233333333 323566677788765
No 155
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=24.66 E-value=48 Score=30.60 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=47.6
Q ss_pred CChhhhcC--CCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCch---hHHHHHHHHHCCC
Q 021646 50 TDVVEACK--DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA---NTNALILKEFAPS 124 (309)
Q Consensus 50 ~~~~~~l~--~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPv---d~~t~~~~~~~~~ 124 (309)
.++.+.++ ++|++|=+.+.+ | .|. +++.+.+.+++ ++.+|.-.|||. +++..-+++.+.|
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~---g-----~ft------~evv~~Ma~~~-~~PIIFaLSNPt~~~E~~pe~a~~~t~G 159 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVG---G-----AFT------EEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKWTDG 159 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCC---C-----CCC------HHHHHHHHhcC-CCCEEEECCCcCCccccCHHHHHHhhcC
Confidence 46788888 999988776632 3 121 35566777888 689999999997 6777777776312
Q ss_pred CCCCc-EEEechhH
Q 021646 125 IPAKN-ITCLTRLD 137 (309)
Q Consensus 125 ~~~~~-ig~gt~ld 137 (309)
+. |.+|+-.+
T Consensus 160 ---~ai~ATGsPf~ 170 (279)
T cd05312 160 ---RALFASGSPFP 170 (279)
T ss_pred ---CEEEEeCCCCC
Confidence 33 56775443
No 156
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=24.46 E-value=1.5e+02 Score=25.57 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=31.5
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.++++|++|+.-.... +..+ . + ++.+...|.+++ ++..+++++|-.|+
T Consensus 64 ~~~~ad~~ilV~D~t~-----~~S~-~-~---i~~w~~~i~~~~-~~~piilvgNK~Dl 111 (200)
T smart00176 64 YYIQGQCAIIMFDVTA-----RVTY-K-N---VPNWHRDLVRVC-ENIPIVLCGNKVDV 111 (200)
T ss_pred HhcCCCEEEEEEECCC-----hHHH-H-H---HHHHHHHHHHhC-CCCCEEEEEECccc
Confidence 4678898888854432 2222 1 2 244566666676 57889999999996
No 157
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=24.23 E-value=1.6e+02 Score=23.69 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=26.8
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.++++|.+++.-.... +. -+ ..++.+...+..+..++..++++.|-.|.
T Consensus 72 ~~~~~d~~llv~d~~~-----~~-s~----~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 120 (165)
T cd01864 72 YYRSANGAIIAYDITR-----RS-SF----ESVPHWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred HhccCCEEEEEEECcC-----HH-HH----HhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 4577888888654321 11 11 12234444444443346667888888886
No 158
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=24.16 E-value=1.6e+02 Score=23.76 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=29.9
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..++++|++++.-.... + +-+ .-++++...+.++..++..++++.|-.|+
T Consensus 69 ~~~~~~~~~l~v~d~~~-----~-~s~----~~~~~~~~~i~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 69 AYYRGAMGFILMYDITN-----E-ESF----NAVQDWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred HHccCCcEEEEEEECCC-----H-HHH----HHHHHHHHHHHHhCCCCCCEEEEEECccc
Confidence 44688998888755431 1 112 22344455556665345568888888886
No 159
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=24.15 E-value=1.8e+02 Score=28.90 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=8.6
Q ss_pred CCCCCcEEEechhHHHHHHHH
Q 021646 124 SIPAKNITCLTRLDHNRAMGQ 144 (309)
Q Consensus 124 ~~~~~~ig~gt~lds~R~~~~ 144 (309)
|+++-+|..+.-||..+++.+
T Consensus 283 G~~~~kIi~S~gLde~~i~~l 303 (464)
T PRK09243 283 GFTDTKIVASNDLDEYTIASL 303 (464)
T ss_pred CCCCcEEEEeCCCCHHHHHHH
Confidence 344433333333444444443
No 160
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=23.85 E-value=79 Score=26.12 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=26.7
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhh
Q 021646 53 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 96 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~ 96 (309)
.+.+.++|.|++-.|.|. .....+.+|..+..++...+.+
T Consensus 2 ~~~~~~~D~i~lpGg~pe----~~~~~l~~~~~~~~~I~~~~~~ 41 (158)
T PF07685_consen 2 EELPPDADGIYLPGGYPE----LFALELSRNRGLKEAIREAAEA 41 (158)
T ss_pred CCCCCCCCEEEECCCcHH----HHHHHHHHHhCHHHHHHHHHHc
Confidence 456789999999998763 3444555676666555555544
No 161
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=23.80 E-value=2.9e+02 Score=20.98 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
.+||+|||....-+.+ +-.++++.+....... .|+.+|++.+
T Consensus 35 e~AD~iiiNTC~V~~~---------Ae~k~~~~i~~l~~~~-~~~~~ivv~G 76 (98)
T PF00919_consen 35 EEADVIIINTCTVRES---------AEQKSRNRIRKLKKLK-KPGAKIVVTG 76 (98)
T ss_pred ccCCEEEEEcCCCCcH---------HHHHHHHHHHHHHHhc-CCCCEEEEEe
Confidence 6899999955433211 1123333443333333 3688777776
No 162
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=23.75 E-value=1.6e+02 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021646 281 KVDEFSRAKMDATAEELAEEKTLAYSCL 308 (309)
Q Consensus 281 ~L~~~E~~~l~~s~~~i~~~i~~~~~~~ 308 (309)
..+..|+++|..+.+.+.+-++....+.
T Consensus 2 KVt~~EkeQLS~AID~mnEGLD~fI~lY 29 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRMNEGLDTFIQLY 29 (84)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5688999999999998888777665543
No 163
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.70 E-value=1.9e+02 Score=23.70 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=31.9
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 52 VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 52 ~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
..++++++|.||.+.|.+.+ + ...++.+...+++.+- . .++++|
T Consensus 54 ~~~al~~~d~vi~~~~~~~~------~-----~~~~~~~~~a~~~~~~-~-~~v~~s 97 (183)
T PF13460_consen 54 VKAALKGADAVIHAAGPPPK------D-----VDAAKNIIEAAKKAGV-K-RVVYLS 97 (183)
T ss_dssp HHHHHTTSSEEEECCHSTTT------H-----HHHHHHHHHHHHHTTS-S-EEEEEE
T ss_pred hhhhhhhcchhhhhhhhhcc------c-----cccccccccccccccc-c-cceeee
Confidence 45679999999999986543 1 6778888888888753 3 455555
No 164
>PF14164 YqzH: YqzH-like protein
Probab=23.70 E-value=1e+02 Score=21.84 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 021646 280 LKVDEFSRAKMDATAEELAE 299 (309)
Q Consensus 280 ~~L~~~E~~~l~~s~~~i~~ 299 (309)
.|||++|++.|.+.+...+.
T Consensus 24 ~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 24 MPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 68999999999887766554
No 165
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=23.55 E-value=93 Score=30.00 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=51.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCc--EEEEecCchhHHHHHHHHHCCCCCCCc---EEEe
Q 021646 59 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC--KVLVVANPANTNALILKEFAPSIPAKN---ITCL 133 (309)
Q Consensus 59 aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~--~vivvsnPvd~~t~~~~~~~~~~~~~~---ig~g 133 (309)
-.+.|+|+..- .+..++..+.+.+...+ -.. +-=|..||.+-++.-..+.+..+.+.- +|+|
T Consensus 30 ~r~liVTd~~~------------~~~g~~~~v~~~L~~~~-i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGG 96 (377)
T COG1454 30 KRALIVTDRGL------------AKLGLLDKVLDSLDAAG-IEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGG 96 (377)
T ss_pred CceEEEECCcc------------ccchhHHHHHHHHHhcC-CeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 45677776421 24566777777777765 121 122456887766655555446777776 4889
Q ss_pred chhHHHHHHHHHHHH
Q 021646 134 TRLDHNRAMGQISER 148 (309)
Q Consensus 134 t~lds~R~~~~la~~ 148 (309)
+.+|.+++-.+++..
T Consensus 97 S~~D~AK~i~~~~~~ 111 (377)
T COG1454 97 SVIDAAKAIALLAEN 111 (377)
T ss_pred cHHHHHHHHHHHhhC
Confidence 999999999998875
No 166
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=23.47 E-value=1.6e+02 Score=23.72 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=28.1
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..+++||++|++-.... +. -+. -++++...+.++..++..+++++|-.|.
T Consensus 71 ~~~~~ad~~i~v~d~~~-----~~-s~~----~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 71 AYYRGAMGIILVYDITD-----EK-SFE----NIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred HHhCCCCEEEEEEECcC-----HH-HHH----hHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 44688999998865431 21 122 1223444444444345567778887776
No 167
>PRK08291 ectoine utilization protein EutC; Validated
Probab=23.27 E-value=1.6e+02 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=33.1
Q ss_pred EEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCC
Q 021646 15 ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGF 68 (309)
Q Consensus 15 ~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~ 68 (309)
++.++|++ .++++..+-++++-. ...+....+..+++.+|||||.+...
T Consensus 159 ~V~v~~R~--~~~a~~l~~~~~~~~---g~~v~~~~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 159 EVRVWARD--AAKAEAYAADLRAEL---GIPVTVARDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred EEEEEcCC--HHHHHHHHHHHhhcc---CceEEEeCCHHHHHccCCEEEEeeCC
Confidence 67899996 567777777765421 12344455567889999999876544
No 168
>PRK06141 ornithine cyclodeaminase; Validated
Probab=23.26 E-value=1.7e+02 Score=27.24 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=32.1
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCC
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGG 67 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag 67 (309)
-++.++|+. .++++..+-++.+. ...+.......+++.+||||+.+..
T Consensus 151 ~~V~V~~Rs--~~~a~~~a~~~~~~----g~~~~~~~~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 151 KQVRVWGRD--PAKAEALAAELRAQ----GFDAEVVTDLEAAVRQADIISCATL 198 (314)
T ss_pred CEEEEEcCC--HHHHHHHHHHHHhc----CCceEEeCCHHHHHhcCCEEEEeeC
Confidence 367899996 56777777777642 1134455556778999999855444
No 169
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.16 E-value=4e+02 Score=25.75 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=41.9
Q ss_pred hcCCCcEEEE-eCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec--CchhHHHHHHHHHCCCCCCCcEE
Q 021646 55 ACKDVNIAVM-VGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA--NPANTNALILKEFAPSIPAKNIT 131 (309)
Q Consensus 55 ~l~~aDiVVi-tag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs--nPvd~~t~~~~~~~~~~~~~~ig 131 (309)
.+.+.|+|+| |+|...+ |..-+.++-..+....+|.-+++|++ .-.+-+..++.++ +.++...+
T Consensus 251 ~~~~~DlVLIDTaGr~~~-----------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~-~~~~~~~~- 317 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK-----------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF-SPFSYKTV- 317 (388)
T ss_pred HhCCCCEEEEcCCCCCcc-----------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh-cCCCCCEE-
Confidence 4689999999 8885432 22223333334444332323444444 2234556787887 56777765
Q ss_pred EechhHH-HHHHHHH
Q 021646 132 CLTRLDH-NRAMGQI 145 (309)
Q Consensus 132 ~gt~lds-~R~~~~l 145 (309)
..|-||+ .+.=.++
T Consensus 318 I~TKlDet~~~G~~l 332 (388)
T PRK12723 318 IFTKLDETTCVGNLI 332 (388)
T ss_pred EEEeccCCCcchHHH
Confidence 3456774 3343333
No 170
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.03 E-value=2.3e+02 Score=23.96 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=30.1
Q ss_pred CCCcEEEEeCCCCCCC-C-CCHHHHHHHhHHHHHHHHHHHhhhc----CCCcEEEEecCc
Q 021646 57 KDVNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEKHA----APNCKVLVVANP 110 (309)
Q Consensus 57 ~~aDiVVitag~~~~~-~-~sr~~~~~~N~~i~~~i~~~i~~~~----~p~~~vivvsnP 110 (309)
...|+|||..|..--. + ....+.+..|. +.++..+.+.+ .|++.+++++.|
T Consensus 78 ~~pd~vii~lGtND~~~~~~~~~~~~~~~l---~~lv~~i~~~~~~~~~~~~~iil~~pp 134 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSYFNLSAAEIAQGL---GALVDIIRTAPIEPGMPAPKILIVAPP 134 (208)
T ss_pred CCCCEEEEeccccccccccCCCHHHHHHHH---HHHHHHHHhccccccCCCCCEEEEeCC
Confidence 4789999999975321 1 11234455554 45555666653 257777877754
No 171
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=22.83 E-value=2.1e+02 Score=22.73 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.++++|.+|+.-.... +.. + .-+..+...+.....|+..++++.|-.|.
T Consensus 69 ~~~~~~~~i~v~d~~~-----~~s-~----~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 117 (161)
T cd04113 69 YYRGAAGALLVYDITN-----RTS-F----EALPTWLSDARALASPNIVVILVGNKSDL 117 (161)
T ss_pred HhcCCCEEEEEEECCC-----HHH-H----HHHHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 3578888888754332 111 1 12234444444444357778888887776
No 172
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Probab=22.69 E-value=91 Score=25.58 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhcCCCcEEEEecC--chhHHHHH
Q 021646 87 YKAQASALEKHAAPNCKVLVVAN--PANTNALI 117 (309)
Q Consensus 87 ~~~i~~~i~~~~~p~~~vivvsn--Pvd~~t~~ 117 (309)
++++.+.+.+- ..|++++++| |.|+++++
T Consensus 64 vKevqK~vrkG--eKGl~VlAgd~sPiDvi~Hl 94 (153)
T KOG3167|consen 64 VKEVQKRVRKG--EKGLCVLAGDTSPIDVITHL 94 (153)
T ss_pred HHHHHHHHhcC--CcceEEEecCCccHHHHhcc
Confidence 55666777774 4788888886 99999864
No 173
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.65 E-value=2.1e+02 Score=22.30 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=32.9
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCc
Q 021646 53 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 110 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnP 110 (309)
.....+.|+||+..|..---... ..-...-.+-++.++..+.+.. |++.+++++-|
T Consensus 60 ~~~~~~~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~vv~~~~~ 115 (187)
T cd00229 60 ALLKDKPDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRERA-PGAKVILITPP 115 (187)
T ss_pred hhccCCCCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHHHC-CCCcEEEEeCC
Confidence 34578899999998865211100 0112233455666677777654 67777777744
No 174
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=22.63 E-value=1.7e+02 Score=24.63 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=31.5
Q ss_pred cCCCcEEEEeCCCCCCC----------CCCH-HHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 56 CKDVNIAVMVGGFPRKE----------GMER-KDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 56 l~~aDiVVitag~~~~~----------~~sr-~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
....|+|+|..|..--- +..+ ..-.+.-.+-++.++..+++.. |++.|++++
T Consensus 66 ~~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~-p~~~Ivv~~ 128 (204)
T cd04506 66 LKKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLN-PDAPIFLVG 128 (204)
T ss_pred cccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence 35899999998864210 0000 1112223345677888888876 788877776
No 175
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=22.58 E-value=2.4e+02 Score=28.87 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=34.9
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEec
Q 021646 53 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvs 108 (309)
.+.+.++|+||.++|........-...+..|..-.+.++..+.+.+ -+.||++|
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag--VgRIV~VS 207 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK--VNHFILVT 207 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC--CCEEEEEc
Confidence 3457899999999987543222223345667777788888877764 23455555
No 176
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=22.06 E-value=3.3e+02 Score=27.46 Aligned_cols=79 Identities=13% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCCHHHHHHHhHH---------HHHHHHHHHhhhcCCCcEEEEecCchh-HHHHHHHHH-CCCCCCCcEEEechhHHHHH
Q 021646 73 GMERKDVMSKNVS---------IYKAQASALEKHAAPNCKVLVVANPAN-TNALILKEF-APSIPAKNITCLTRLDHNRA 141 (309)
Q Consensus 73 ~~sr~~~~~~N~~---------i~~~i~~~i~~~~~p~~~vivvsnPvd-~~t~~~~~~-~~~~~~~~ig~gt~lds~R~ 141 (309)
|.+|+.+.-.|.+ ++.++.+..... |.+.++..|--|| .+.-++.|+ +|.-+-+-||+.+--|--||
T Consensus 473 gsn~enlaLQNiQARiRMvLaylfAqL~~wvr~~--~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~F 550 (706)
T KOG2303|consen 473 GSNRENLALQNIQARIRMVLAYLFAQLLLWVRGR--PGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRF 550 (706)
T ss_pred CchhhhHhHHHHHHHHHHHHHHHHHHHHHHhcCC--CCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHH
Confidence 4677777767754 466777777776 5887666665555 444333333 33345556899999999999
Q ss_pred HHHHHHHhCCCC
Q 021646 142 MGQISERLKVHV 153 (309)
Q Consensus 142 ~~~la~~l~v~~ 153 (309)
-.+.+++++.+.
T Consensus 551 l~~a~~~~~lp~ 562 (706)
T KOG2303|consen 551 LQYAKEKFGLPA 562 (706)
T ss_pred HHHHHHhcCchH
Confidence 999999999754
No 177
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=22.05 E-value=2.3e+02 Score=22.82 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=32.4
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhHHH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 115 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~~t 115 (309)
.++++|++|++-.... + +-++ + +...+.+.+.++. |+..+++++|-.|+..
T Consensus 66 ~~~~~d~~ilv~d~~~-----~-~s~~-~--~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 116 (174)
T smart00174 66 SYPDTDVFLICFSVDS-----P-ASFE-N--VKEKWYPEVKHFC-PNTPIILVGTKLDLRE 116 (174)
T ss_pred hcCCCCEEEEEEECCC-----H-HHHH-H--HHHHHHHHHHhhC-CCCCEEEEecChhhhh
Confidence 3678999999865432 1 1122 1 1223455666665 6778999999999754
No 178
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=21.80 E-value=1.6e+02 Score=22.10 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=29.7
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchh
Q 021646 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 112 (309)
Q Consensus 56 l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd 112 (309)
++++|.+|+.-... +.+-+. ++.-+....+.+.+.+ ++.-+++++|-.|
T Consensus 71 ~~~~d~~ilv~D~s------~~~s~~-~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLS------DPESLE-YLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECC------GHHHHH-HHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred hhcCcEEEEEEcCC------ChHHHH-HHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 78899999886432 222232 2333445566677666 5777888887655
No 179
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=21.05 E-value=2.1e+02 Score=22.95 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 53 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 53 ~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
...++++|++|+.-.... +.. +. + ++.+...+.+.+ ++..++++.|-.|.
T Consensus 67 ~~~~~~~d~~i~v~d~~~-----~~s-~~-~---~~~~~~~i~~~~-~~~p~ivv~nK~Dl 116 (161)
T cd04124 67 ASYYHKAHACILVFDVTR-----KIT-YK-N---LSKWYEELREYR-PEIPCIVVANKIDL 116 (161)
T ss_pred HHHhCCCCEEEEEEECCC-----HHH-HH-H---HHHHHHHHHHhC-CCCcEEEEEECccC
Confidence 345788999988765321 111 11 1 234455555665 56778899999886
No 180
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=20.95 E-value=1.7e+02 Score=25.89 Aligned_cols=49 Identities=10% Similarity=0.242 Sum_probs=31.1
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 55 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 55 ~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
.+.+||++|+.-.... +. -+.. ++..+...+.+++ |+..+++++|-.|+
T Consensus 81 ~~~~ad~vIlVyDit~-----~~-Sf~~---~~~~w~~~i~~~~-~~~piilVgNK~DL 129 (232)
T cd04174 81 CYSDSDAVLLCFDISR-----PE-TVDS---ALKKWKAEIMDYC-PSTRILLIGCKTDL 129 (232)
T ss_pred HcCCCcEEEEEEECCC-----hH-HHHH---HHHHHHHHHHHhC-CCCCEEEEEECccc
Confidence 4678999888865432 21 2221 2234455666666 57778899999996
No 181
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=20.71 E-value=2e+02 Score=26.79 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=33.6
Q ss_pred EEEEEEecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeCCC
Q 021646 14 VILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGF 68 (309)
Q Consensus 14 ~~l~L~D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVitag~ 68 (309)
-.+.+++.+ .++++..+-++.+-. ...+....+..+++.+|||||.+...
T Consensus 155 ~~v~V~~R~--~~~a~~~a~~~~~~~---g~~v~~~~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 155 RSARIWARD--SAKAEALALQLSSLL---GIDVTAATDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred cEEEEECCC--HHHHHHHHHHHHhhc---CceEEEeCCHHHHhccCCEEEEecCC
Confidence 358899997 567777777775321 12344455667789999999987654
No 182
>PLN02688 pyrroline-5-carboxylate reductase
Probab=20.54 E-value=5e+02 Score=22.94 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=24.3
Q ss_pred eEEEEEE-ecCCccchhhHHHHHHhhccCCCCcceeecCChhhhcCCCcEEEEeC
Q 021646 13 PVILHML-DIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVG 66 (309)
Q Consensus 13 ~~~l~L~-D~~~~~~~~~g~~~DL~~~~~~~~~~~~~~~~~~~~l~~aDiVVita 66 (309)
+.+++.+ |.+ .+++ ..+... ++....+..+.+++||+||++.
T Consensus 27 ~~~i~v~~~r~--~~~~----~~~~~~------g~~~~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 27 PSRISTADDSN--PARR----DVFQSL------GVKTAASNTEVVKSSDVIILAV 69 (266)
T ss_pred cceEEEEeCCC--HHHH----HHHHHc------CCEEeCChHHHHhcCCEEEEEE
Confidence 5577788 775 2332 222221 2334444556678999999986
No 183
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.41 E-value=4.1e+02 Score=21.39 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=29.7
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCch
Q 021646 57 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 111 (309)
Q Consensus 57 ~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPv 111 (309)
.++|+|-+++-. ......++++...+++.+..+..+++-++++
T Consensus 49 ~~adiVglS~L~------------t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~ 91 (128)
T cd02072 49 TDADAILVSSLY------------GHGEIDCKGLREKCDEAGLKDILLYVGGNLV 91 (128)
T ss_pred cCCCEEEEeccc------------cCCHHHHHHHHHHHHHCCCCCCeEEEECCCC
Confidence 489998887632 2234566777778888875476788888864
No 184
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.31 E-value=2e+02 Score=21.75 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=30.2
Q ss_pred CceEEEEeEE-ecCCcEEEeCCCCCCHHHHHHHHHHHHHH
Q 021646 259 EGLIYSFPVT-CEKGEWSIVKGLKVDEFSRAKMDATAEEL 297 (309)
Q Consensus 259 ~~v~~s~Pv~-~~~Gv~~i~~~~~L~~~E~~~l~~s~~~i 297 (309)
+|.|++.|-+ .++|--+-+- .|.+.+-+++++.++-.-
T Consensus 41 ~GlfVAMPSrrt~dgEFrDI~-HPI~~~~R~kIq~aVl~~ 79 (95)
T COG2088 41 NGLFVAMPSRRTPDGEFRDIA-HPINSDTREKIQDAVLKE 79 (95)
T ss_pred cceEEEccCccCCCcchhhcc-CcCCHHHHHHHHHHHHHH
Confidence 5789999987 5999776554 589999999998877443
No 185
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=20.29 E-value=2.3e+02 Score=22.74 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=30.3
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 54 ~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..+.++|.+++.-.... +.. +. -+..+...+.+++..+..+++++|-.|+
T Consensus 68 ~~~~~~~~~i~v~d~~~-----~~s-f~----~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 68 QYYRRAQGIFLVYDISS-----ERS-YQ----HIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred HHhcCCcEEEEEEECCC-----HHH-HH----HHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 34678999998876542 111 22 1234455555555335668888998886
No 186
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=20.14 E-value=50 Score=29.78 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=36.6
Q ss_pred eecCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 47 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 47 ~~~~~~~~~l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
..+++...+++|||+|| +...+|..+=+++-..|.+.|++++ |.+||-..+
T Consensus 85 ~~~tnv~~~v~dadlii--------------EAivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl 135 (298)
T KOG2304|consen 85 KTSTNVSDAVSDADLII--------------EAIVENLDIKRKLFKDLDKIAKSST--ILATNTSSL 135 (298)
T ss_pred HHcCCHHHhhhhhHHHH--------------HHHHHhHHHHHHHHHHHHhhcccce--EEeecccce
Confidence 34455566667777644 4466899999999999999997665 567776543
No 187
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=20.11 E-value=2.2e+02 Score=24.69 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=28.7
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHHhHHHHHHHHHHHhhhcCCCcEEEEecCchhH
Q 021646 56 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113 (309)
Q Consensus 56 l~~aDiVVitag~~~~~~~sr~~~~~~N~~i~~~i~~~i~~~~~p~~~vivvsnPvd~ 113 (309)
++++|.+|+.-.... +. -+. + ++.+...+.+++ ++..+++++|..|+
T Consensus 83 ~~~~~~~ilvfD~~~-----~~-s~~-~---i~~w~~~i~~~~-~~~piilvgNK~Dl 129 (219)
T PLN03071 83 YIHGQCAIIMFDVTA-----RL-TYK-N---VPTWHRDLCRVC-ENIPIVLCGNKVDV 129 (219)
T ss_pred cccccEEEEEEeCCC-----HH-HHH-H---HHHHHHHHHHhC-CCCcEEEEEEchhh
Confidence 567777777654331 22 221 2 234556666666 57778889999997
Done!