RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021646
(309 letters)
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 457 bits (1177), Expect = e-163
Identities = 159/301 (52%), Positives = 206/301 (68%), Gaps = 5/301 (1%)
Query: 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
IA G MLG DQPVIL +L+I A +AL GV MEL D AFPLL G+ AT D A KD +
Sbjct: 23 RIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
A++VG PRK GMER+D++ N I+ Q AL + A + KVLVV NPANTNALI +
Sbjct: 83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYK 142
Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
AP + +N T +TRLDHNRA Q++++ V ++ + +WGNHSST +PD+ HA V
Sbjct: 143 NAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV-- 200
Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
+P E V D W FI TV QRGAAII+AR SSA SAA++A +HIRDW LGTP
Sbjct: 201 --DGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTP 257
Query: 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAEE 300
+G WVSM V S G YGIPEG++YSFPVT + G + +V+GL+++EF+R +M+ TA+EL +E
Sbjct: 258 EGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317
Query: 301 K 301
Sbjct: 318 M 318
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 453 bits (1167), Expect = e-162
Identities = 158/310 (50%), Positives = 206/310 (66%), Gaps = 7/310 (2%)
Query: 1 MIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 58
IA G MLG DQPVIL +L+I E A +AL GV ME+ D AFPLL G+ A D + A KD
Sbjct: 24 RIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83
Query: 59 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 118
++A++VG PR GMERKD++ N I+ Q A++ A+ N KVLVV NPANTNA I
Sbjct: 84 ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA 143
Query: 119 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV 178
+ APS+PAKN T + RLDHNRA+ QI+ + VS ++ + +WGNHS T Y D +A +
Sbjct: 144 MKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI 203
Query: 179 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLG 238
V++ + DD W F+ TV +RGAAII AR +SSA SAA++A DHI DWVLG
Sbjct: 204 ----DGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLG 259
Query: 239 TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 298
T G W +MG+ SDGSYGIPEG+I+ FPVT E GE+ IV+GL +D FS+ +++ T EL
Sbjct: 260 TA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELL 318
Query: 299 EEKTLAYSCL 308
EE+ L
Sbjct: 319 EEQNGVQHLL 328
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 450 bits (1160), Expect = e-161
Identities = 185/310 (59%), Positives = 229/310 (73%), Gaps = 1/310 (0%)
Query: 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
I G + G DQP+IL +LDI P L+GV MEL D A PLLK V+AT A KD++
Sbjct: 22 SIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
+A++VG PR++GMERKD++ NV I+K Q +AL+K+A + KV+VV NPANTN L +
Sbjct: 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK 141
Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
APSIP +N +CLTRLDHNRA QI+ +L V DVKNVIIWGNHSSTQYPDVNHA V
Sbjct: 142 SAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKL 201
Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
E V EAV DD+WL EFITTVQQRGAA+IKARKLSSA+SAA + CDH+RD GTP
Sbjct: 202 QAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTP 261
Query: 241 KGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+GL +++FSR KMD TA+ELAE
Sbjct: 262 EGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 321
Query: 300 EKTLAYSCLN 309
EK A+ L+
Sbjct: 322 EKETAFEFLS 331
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 438 bits (1129), Expect = e-155
Identities = 129/310 (41%), Positives = 176/310 (56%), Gaps = 6/310 (1%)
Query: 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
+A G + G DQP+ L +L E + +AL GV MEL D+ +PLL+ V D E +DV+
Sbjct: 51 KLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 110
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
A+++G PR GMER ++ N I+ Q AL A+ N KVLVV NP NTNALI +
Sbjct: 111 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLK 170
Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
AP IPAKN LTRLD NRA Q++ + V V NV IWGNHS+TQ PD +A +
Sbjct: 171 NAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI-- 228
Query: 181 SKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
+PV+E + WL EF TVQ+RG A+I+ SSA S A S D I+ V TP
Sbjct: 229 --DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTP 286
Query: 241 KGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEK-GEWSIVKGLKVDEFSRAKMDATAEELA 298
+G W S GVY+ G+ YGI E +++S P + G++ + + D+F ++ + EL
Sbjct: 287 EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELL 346
Query: 299 EEKTLAYSCL 308
EK
Sbjct: 347 AEKKCVAHLT 356
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 292 bits (749), Expect = 2e-98
Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 19/304 (6%)
Query: 1 MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 60
A L P+ + L +P A L GV E+ F L + T+D+ EA D
Sbjct: 27 TAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGFEGL-NLTFTSDIKEALTDAK 78
Query: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 120
V GG PRKEGM R+D++ N I ++ + V+++ NPA+ L+
Sbjct: 79 YIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLI 138
Query: 121 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 180
++ + +T L LD R ++++ + S V N +G H + A V
Sbjct: 139 YSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKV-- 195
Query: 181 SKGEKPVREAVADDNWLNT---EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVL 237
P+ + + D N E V + GA IIK R SS S + + + IR +
Sbjct: 196 --NGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMG 253
Query: 238 GTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEEL 297
G W + Y + G ++ + G +E RA + + L
Sbjct: 254 GE-AFRWPAG-CYVNV-PGFEHIMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHL 310
Query: 298 AEEK 301
A+ +
Sbjct: 311 AKLR 314
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 86.0 bits (214), Expect = 1e-19
Identities = 46/262 (17%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
+ ++ ++ ++ G PRK GM R D++ N+ + + ++ + PN V+ + NP +
Sbjct: 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLDI 127
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 161
+L++F + + N+ +G +++ L V V V+ ++
Sbjct: 128 MVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175
Query: 162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 217
G H T P + V + + + + L E + + R G I+ K
Sbjct: 176 -GGHGDTMVPLTKMSNV----AGVSLEQ-LVKEGKLKQERLDAIVSRTRSGGGEIVALLK 229
Query: 218 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 277
SA A ++A + + L K G YG+ E L P +
Sbjct: 230 TGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI 289
Query: 278 KGLKVDEFSRAKMDATAEELAE 299
+ +++ + R ++ + + +
Sbjct: 290 E-VEISDKEREQLQVSINAIKD 310
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 84.9 bits (211), Expect = 4e-19
Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 35/266 (13%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
V + D + +I ++ G PRK GM R+D++ KN I K + KH + N ++
Sbjct: 58 VTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIII 115
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
VV+NP + + + L R +G I+ L V +
Sbjct: 116 VVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 213
D+ ++ G H P V + TV P+ + + + + + + GA I+
Sbjct: 164 QDINACVL-GGHGDAMVPVVKYTTV----AGIPISDLLPAETI--DKLVERTRNGGAEIV 216
Query: 214 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 273
+ K SA A +S+ + + ++ K + V +G YGI + PV +
Sbjct: 217 EHLKQGSAFYAPASSVVEMVESIVLDRKRV-LPCAVGLEGQYGI-DKTFVGVPVKLGRNG 274
Query: 274 WSIVKGLKVDEFSRAKMDATAEELAE 299
+ + +D+ + +A+ + E
Sbjct: 275 VEQIYEINLDQADLDLLQKSAKIVDE 300
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 84.9 bits (211), Expect = 5e-19
Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+ + E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+
Sbjct: 71 IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
+ NP + KE + + N+ G +S L V
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----G 209
SDV +++ G H P + T+ G + + + + I + ++ G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTI----GGILLSD-FVEQGKITHSQINEIIKKTAFGG 230
Query: 210 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 269
I++ K SA A +++ + L K + Y G Y + L PV
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSV-LVCSTYLTGQYNV-NNLFVGVPVVI 288
Query: 270 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
K V + + + ++ + E +
Sbjct: 289 GKNGIEDVVIVNLSDDEKSLFSKSVESIQN 318
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 84.5 bits (210), Expect = 6e-19
Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 44/270 (16%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
V T D +D ++ ++ G PR GM R D+++KN I + +P+ ++
Sbjct: 58 VTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTII 115
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
VVANP + + E + NR MG I+E L V V
Sbjct: 116 VVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEELDVSV 163
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 213
DV+ +++ G H T P + TV G PV + + D E + + G I+
Sbjct: 164 RDVQALLM-GGHGDTMVPLPRYTTV----GGIPVPQLIDDARI--EEIVERTKGAGGEIV 216
Query: 214 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 269
S+ +AA ++D + Y DG YG+ + L PV
Sbjct: 217 DLMGTSAWYAPGAAAAEMTEAILKD------NKRILPCAAYCDGEYGL-DDLFIGVPVKL 269
Query: 270 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
G V + +D +A++ +A +
Sbjct: 270 GAGGVEEVIEVDLDADEKAQLKTSAGHVHS 299
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 83.7 bits (208), Expect = 9e-19
Identities = 51/296 (17%), Positives = 100/296 (33%), Gaps = 43/296 (14%)
Query: 18 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 77
+DI + G + E ++ V+ G PR+ G R
Sbjct: 31 FVDIPDKEDDTVGQAADTNHGI-AYDSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRI 89
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 137
D+ N I + S+L++H + L +NP + L E
Sbjct: 90 DLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLYEA------------GDRS 136
Query: 138 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 185
+ +G +SE V +V+ I+ G H Q P + +V
Sbjct: 137 REQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVPVFSKVSV----DGT 191
Query: 186 PVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW- 244
+ + + + +Q+ +I+ + + + H+ + +L
Sbjct: 192 DPEFSGDEKE----QLLGDLQESAMDVIE--RKGATEWGPARGVAHMVEAILHDTGEVLP 245
Query: 245 VSMGVYSDGSYGIPEGLIYSFPVT-CEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
S V +G +G E + PV+ G IV+ +D++ + M AE+L++
Sbjct: 246 AS--VKLEGEFGH-EDTAFGVPVSLGSNGVEEIVE-WDLDDYEQDLMADAAEKLSD 297
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 83.7 bits (208), Expect = 9e-19
Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 44/270 (16%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+ + E + +I ++ G RK GM R+ ++ N + A ++ + A + V+
Sbjct: 56 ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
+ NP + ++ + T R +G IS++L V
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 213
V +++ G H +P ++V G P+ ++ + E ++ GA I
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKIT 214
Query: 214 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 269
+ R SS A + RD +Y G YG ++ P
Sbjct: 215 ELRGYSSNYGPAAGLVLTVEAIKRD------SKRIYPYSLYLQGEYGY-NDIVAEVPAVI 267
Query: 270 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
K + L + E + K D + + +
Sbjct: 268 GKSGIERIIELPLTEDEKRKFDEAVQAVKK 297
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 83.3 bits (207), Expect = 1e-18
Identities = 53/295 (17%), Positives = 109/295 (36%), Gaps = 35/295 (11%)
Query: 18 MLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMER 76
++DI G +++++A+ + T D ++ V+ G RK GM R
Sbjct: 37 LVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSR 96
Query: 77 KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 136
D+++ N I K+ + KH +PN ++V+ NP + + +
Sbjct: 97 DDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVDAMTYSVFKE------------AGF 143
Query: 137 DHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGE 184
R +GQ I++ L + V D+ ++ G H P V ++ G
Sbjct: 144 PKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYA----GG 198
Query: 185 KPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW 244
P+ + + + ++ G I+ SA A +++ + + +L +
Sbjct: 199 IPLETLIPKERL--EAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRV- 255
Query: 245 VSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
+ Y +G YG L PV + L++ + +D + E +
Sbjct: 256 LPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRN 309
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 83.4 bits (207), Expect = 2e-18
Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 42/275 (15%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAP 100
V A A + ++ G + G R D++ N I + ++K+ P
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124
Query: 101 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISER 148
++VV NP + ++ E + + N G +++
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172
Query: 149 LKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR 208
L V DV+ +I G H P V + TV P+++ D + + + + +
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITV----NGYPIQK-FIKDGVVTEKQLEEIAEH 226
Query: 209 ----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 264
G I++ SA A +++ + L K + VY +G YG+ + +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRV-IPCSVYCNGEYGL-KDMFIG 284
Query: 265 FPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
P V L+++E + + + +++
Sbjct: 285 LPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMA 319
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 82.9 bits (206), Expect = 2e-18
Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 35/266 (13%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
V T + + ++ V+ G PRK GM R+D++ N I +A S +PN ++
Sbjct: 59 VTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVII 116
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
+V NP + + E + R +GQ I+ V V
Sbjct: 117 MVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFIAMEAGVSV 164
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 213
DV+ +++ G H P + + PV E +A D + + ++ G I+
Sbjct: 165 EDVQAMLM-GGHGDEMVPLPRFSCI----SGIPVSEFIAPDRL--AQIVERTRKGGGEIV 217
Query: 214 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 273
K SA A ++A + + VL K + + Y G YG+ + + PV G
Sbjct: 218 NLLKTGSAYYAPAAATAQMVEAVLKDKKRV-MPVAAYLTGQYGL-NDIYFGVPVILGAGG 275
Query: 274 WSIVKGLKVDEFSRAKMDATAEELAE 299
+ L ++E A ++A+A+ +
Sbjct: 276 VEKILELPLNEEEMALLNASAKAVRA 301
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 82.5 bits (205), Expect = 3e-18
Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 37/262 (14%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
++ ++ P + +R +++ N I + A ++K+ PN V+ + NP +
Sbjct: 68 ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDV 126
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 161
++ + L HN+ G I++ V+ SDV +I
Sbjct: 127 MVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174
Query: 162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 217
G H P + +V G P+ + + E I + + K
Sbjct: 175 -GGHGDGMVPATSSVSV----GGVPLSSFI-KQGLITQEQIDEIVCHTRIAWKEVADNLK 228
Query: 218 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 277
+A A ++A + + L K V + YG+ +G+ P K +
Sbjct: 229 TGTAYFAPAAAAVKMAEAYLKDKKAV-VPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDI 286
Query: 278 KGLKVDEFSRAKMDATAEELAE 299
L + + + + E+
Sbjct: 287 LELDLTPLEQKLLGESINEVNT 308
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 82.5 bits (205), Expect = 3e-18
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 37/262 (14%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDA 129
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 161
L++F + L ++ +G +SE V V DV ++
Sbjct: 130 MVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 217
G H + P ++TV P+ + V W + + + + QR GA I+ K
Sbjct: 178 -GGHGDSMVPLARYSTV----AGIPLPDLV-KMGWTSQDKLDKIIQRTRDGGAEIVGLLK 231
Query: 218 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 277
SA A +++ + + L K + + G YG+ + + P +
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKKRV-LPVAAQLSGQYGV-KDMYVGVPTVIGANGVERI 289
Query: 278 KGLKVDEFSRAKMDATAEELAE 299
+ +D+ +A+ D + +A
Sbjct: 290 IEIDLDKDEKAQFDKSVASVAG 311
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 77.2 bits (191), Expect = 2e-16
Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 49/276 (17%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+V++ D + + ++ G ++EG R +++ +NV+I+K + K+ +P CK+L
Sbjct: 76 IVSSKDY-SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133
Query: 106 VVANPANTNA-LILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVH 152
+V+NP + + K ++ NR +G + ERL VH
Sbjct: 134 IVSNPVDILTYVAWK-------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVH 180
Query: 153 VSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT-----EFITTVQQ 207
++ G H + P + V ++ + V
Sbjct: 181 PLSCHGWVL-GEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQWKDVHKQVVD 235
Query: 208 RGAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 264
+IK + +S LS A A +++ + G YGI E + S
Sbjct: 236 SAYEVIKLKGYTSWAIGLSVADLAESIMKN------LRRVHPISTMIKGLYGIKEDVFLS 289
Query: 265 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
P + + G +VK + + A++ +A+ L
Sbjct: 290 VPCILGQNGISDVVK-VTLTPDEEARLKKSADTLWG 324
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 76.8 bits (190), Expect = 3e-16
Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 45/300 (15%)
Query: 18 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 77
++DI + G ++L +A P + KD ++ V+ G P+K G R
Sbjct: 39 IVDI--FKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRL 95
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 137
D+++KN+ I K+ + N LV ANP + + L+
Sbjct: 96 DLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWK------------LSGFP 142
Query: 138 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 185
NR +G I+E + V V I+ G H T++P +HA + G
Sbjct: 143 KNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI----GGV 197
Query: 186 PVREAVADDNWLNTEFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPK 241
+ E V + + + + + IIK + + ++A I +L
Sbjct: 198 TIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKG--ATFYGIATALARISKAILNDEN 255
Query: 242 GTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
+S VY DG YG+ + P V G +I++ + + + M +A +L +
Sbjct: 256 AVLPLS--VYMDGQYGL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKSASQLKK 311
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 76.4 bits (189), Expect = 4e-16
Identities = 53/299 (17%), Positives = 112/299 (37%), Gaps = 41/299 (13%)
Query: 18 MLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEG 73
++ E + L G++ ++ DA V + + + + ++ ++ G PRKEG
Sbjct: 31 LIGREHSINKLEGLREDIYDALAGTRSDA-NIYVESDENLRIIDESDVVIITSGVPRKEG 89
Query: 74 MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 133
M R D+ N I A + + K+ V+ NP +
Sbjct: 90 MSRMDLAKTNAKIVGKYAKKIAEI-CDT-KIFVITNPVDVMTYKALVD------------ 135
Query: 134 TRLDHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTS 181
++ + N+ G I++ VH+ +V+ II G H + P ++ ++
Sbjct: 136 SKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRII-GEHGDSMVPLLSATSI--- 191
Query: 182 KGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPK 241
G P+++ E I V+ +G II+ + ++A ++ ++ K
Sbjct: 192 -GGIPIQKFERFKELPIDEIIEDVKTKGEQIIR--LKGGSEFGPAAAILNVVRCIVNNEK 248
Query: 242 GTW-VSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
+S Y DG + + PV + V +++D+ +AE + +
Sbjct: 249 RLLTLS--AYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK 305
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 76.4 bits (189), Expect = 4e-16
Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 42/276 (15%)
Query: 54 EACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 108
+ ++ ++ GF + G R D++ N I ++K+ PN ++VV
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126
Query: 109 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDV 156
NP + +L + + + N+ +G IS++L V DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 157 KNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR---GAAII 213
I+ G H + + TV G P++E ++ ++ + + R A I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITV----GGIPLQE-FINNKLISDAELEAIFDRTVNTALEI 228
Query: 214 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 273
+S A ++A + + L K + +G YG + PV
Sbjct: 229 VNLH-ASPYVAPAAAIIEMAESYLKDLKKV-LICSTLLEGQYGH-SDIFGGTPVVLGANG 285
Query: 274 WSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 309
V L+++ +AK D E K LA+ +
Sbjct: 286 VEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH 321
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 76.1 bits (188), Expect = 4e-16
Identities = 65/302 (21%), Positives = 110/302 (36%), Gaps = 47/302 (15%)
Query: 16 LHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIAVMVGGFPRKEGM 74
L + DI GV +L +KG + + + K ++ V+ G PRK GM
Sbjct: 29 LTLYDIAHT----PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGM 84
Query: 75 ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNI 130
R D+ + N +I +A +H P+ + +++NP N+ A + K+ I
Sbjct: 85 TRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKKHG-VYNPNKI 142
Query: 131 TCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVRE 189
+T LD RA ++E + + V +V + G H+ T P ++ T K + P +
Sbjct: 143 FGVTTLDIVRANAFVAELKGLDPARV-SVPVIGGHAGKTIIPLISQCTP---KVDFPQDQ 198
Query: 190 AVADDNWLNTEFITTVQQRGAAIIKARK------LSSALSAASSA---CDHIRDWVLGTP 240
+Q+ G ++KA+ LS A + A D +
Sbjct: 199 LST--------LTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNG------ 244
Query: 241 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFS---RAKMDATAEEL 297
K V P Y F G+ I K L + + S + EL
Sbjct: 245 KEGVVECSFVKSQETDCP----Y-FSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPEL 299
Query: 298 AE 299
Sbjct: 300 KA 301
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 76.2 bits (188), Expect = 5e-16
Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 48/274 (17%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+V+ D + V+ G ++EG R +++ +NV+I+K + KH +P+C
Sbjct: 78 IVSGKDY-SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
+ + L+ L +R +G + ERL VH
Sbjct: 136 LHPELGTDKNKQDWK------------LSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----- 208
V +I G H + + +K K V ++ + + ++
Sbjct: 184 CLVIGWVI-GQHGDSVPSVWSGMWD--AKLHKDVVDSAYE--------VIKLKGYTSWAI 232
Query: 209 GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPV 267
G + + + ++ + + ++ VS YGI + + S P
Sbjct: 233 GLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVS--TMVKDFYGIKDNVFLSLPC 290
Query: 268 TCEKG--EWSIVKGLKVDEFSRAKMDATAEELAE 299
G +IVK +K+ ++ +A L +
Sbjct: 291 VLNNGISHCNIVK-MKLKPDEEQQLQKSATTLWD 323
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 74.8 bits (185), Expect = 1e-15
Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 45/300 (15%)
Query: 18 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 77
++D+ + G ++LI P + K ++ ++ G P+K G R
Sbjct: 30 LIDV--DKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRL 86
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 137
++ +N + K A + K+ AP+ V+VV NP + + + +D
Sbjct: 87 QLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKE------------SGMD 133
Query: 138 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 185
+ G I++ V +I G H ++ P + A + G
Sbjct: 134 PRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMI----GGI 188
Query: 186 PVREAVADDNWLNTEFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPK 241
P++ +++ + ++ II+ + + A + A I + + K
Sbjct: 189 PLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE--RKGATHYAIALAVADIVESIFFDEK 246
Query: 242 GTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
+S VY + G+ + L S P + G I++ L ++E +A L
Sbjct: 247 RVLTLS--VYLEDYLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAFRKSASILKN 302
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 74.5 bits (184), Expect = 2e-15
Identities = 55/267 (20%), Positives = 92/267 (34%), Gaps = 50/267 (18%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+V D K I V+ G RK GM R D+ KN I K A + ++ AP K+L
Sbjct: 58 IVGGADY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKIL 115
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
VV NP + I+ + + N G +
Sbjct: 116 VVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYNAGAR-- 161
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 213
+++ I G H + + + A + EAV +D V+ A +I
Sbjct: 162 -NIRRAWIIGEHGDSMFVAKSLADF----DGEVDWEAVEND----------VRFVAAEVI 206
Query: 214 KARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVTCEKG 272
K + + + + A + V+ S + G YGI E + P K
Sbjct: 207 K--RKGATIFGPAVAIYRMVKAVVEDTGEIIPTS--MILQGEYGI-ENVAVGVPAKLGKN 261
Query: 273 EWSIVKGLKVDEFSRAKMDATAEELAE 299
+ +K+ + K+ +A+ L E
Sbjct: 262 GAEVAD-IKLSDEEIEKLRNSAKILRE 287
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 73.3 bits (181), Expect = 5e-15
Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 49/276 (17%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+ + D E C+D ++ V+ G +K G R +++ V+I KA L K APN +
Sbjct: 64 IDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
++ NP + + ++ LT L N+ G I+++ V+V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN--WLNTEFITTVQQR--- 208
+V I G H ++ P AT+ G P+ + L+ + + Q
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 209 -GAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 264
II + ++ +S + D + + +GI + S
Sbjct: 225 AAYKIINGKGATNYAIGMSGVDIIEAVLHD------TNRILPVSSMLKDFHGI-SDICMS 277
Query: 265 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
P + +G + + V + A + +AE L E
Sbjct: 278 VPTLLNRQGVNNTIN-TPVSDKELAALKRSAETLKE 312
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 73.3 bits (181), Expect = 5e-15
Identities = 58/264 (21%), Positives = 94/264 (35%), Gaps = 42/264 (15%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
E CKD +I + G +K G R +++ KN+ I+K S + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVDI 127
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 161
+ + L R +G +SE +V II
Sbjct: 128 LTYATWK------------FSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175
Query: 162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 217
G H T+ P +HA V G PV E V ++ E + + II+ +
Sbjct: 176 -GEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKG 230
Query: 218 LSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWS 275
+ + + I +L VS Y DG YG + + P V G
Sbjct: 231 --ATYYGVAMSLARITKAILHNENSILTVS--TYLDGQYGA-DDVYIGVPAVVNRGGIAG 285
Query: 276 IVKGLKVDEFSRAKMDATAEELAE 299
I + L ++E + + +A L
Sbjct: 286 ITE-LNLNEKEKEQFLHSAGVLKN 308
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 72.1 bits (178), Expect = 1e-14
Identities = 50/271 (18%), Positives = 97/271 (35%), Gaps = 41/271 (15%)
Query: 46 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 105
+ D + C+D ++ V+ G +K G R D++ KN++I+++ ++ L
Sbjct: 63 DIWHGDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFL 120
Query: 106 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 153
V NP + + + L H R +G + E V
Sbjct: 121 VATNPVDILTYATWK------------FSGLPHERVIGSGTILDTARFRFLLGEYFSVAP 168
Query: 154 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR---GA 210
+V II G H T+ P + A + G P+R+ V + + + A
Sbjct: 169 QNVHAYII-GEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAA 223
Query: 211 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VT 268
I +K + + + +L VS Y DG YG + P V
Sbjct: 224 YQIIEKK-GATYYGIAMGLARVTRAILHNENAILTVS--AYLDGLYGE-RDVYIGVPAVI 279
Query: 269 CEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
G +++ +++++ + + +A L
Sbjct: 280 NRNGIREVIE-IELNDDEKNRFHHSAATLKS 309
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 71.9 bits (177), Expect = 1e-14
Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 43/289 (14%)
Query: 18 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 77
+LD+ + +D L V + D+ A + +
Sbjct: 44 LLDLSEGTKG------ATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVN-SLGSSQSYL 95
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 137
DV+ NV +++A AL + + + +LV + P + + + + I LD
Sbjct: 96 DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLD 154
Query: 138 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL 197
R I+ LK S + +I G + + S
Sbjct: 155 SQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEEVVSH--------------- 198
Query: 198 NTEFITTVQQRGAAIIKARKLSS---ALSAASSACDHIRDW--VLGTPKGTWVSMGVYSD 252
+ R +++ + S LS A + + V VS +
Sbjct: 199 --TSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVH--S----VS--ALAK 248
Query: 253 GSYGIPEGLIYSFP-VTCEKGEWSIVK-GLKVDEFSRAKMDATAEELAE 299
G Y I + S P + G ++K LK D K+ ++A +
Sbjct: 249 GYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDT-VTEKLQSSASSIHS 296
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 71.9 bits (177), Expect = 2e-14
Identities = 64/297 (21%), Positives = 117/297 (39%), Gaps = 35/297 (11%)
Query: 15 ILHMLDIEPAAEALNGVKMEL--IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKE 72
+LH+ D+ A GV ++ +D + +G + + A +++ ++ G PRK
Sbjct: 36 VLHLYDVVNA----PGVTADISHMDTGAVV-RGFLGQQQLEAALTGMDLIIVPAGVPRKP 90
Query: 73 GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF---APSIPAKN 129
GM R D+ N I K + K P V +++NP N+ I E A + K
Sbjct: 91 GMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKR 149
Query: 130 ITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVRE 189
+ +T LD RA ++E L + DV ++ G+ T P ++ +S ++ +
Sbjct: 150 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISY 209
Query: 190 AVADDNWLNTEFITTVQQRGAAIIKARK------LSSALSAASSACDHIRDWVLGTPKGT 243
+Q G +++A+ LS A +A A +R L G
Sbjct: 210 LTDR-----------IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG--LRGDAG- 255
Query: 244 WVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGL-KVDEFSRAKMDATAEELAE 299
V + E ++ V + V L ++E+ R ++ +ELA
Sbjct: 256 -VIECAFVSSQVT--ELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAG 309
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 71.0 bits (175), Expect = 2e-14
Identities = 49/301 (16%), Positives = 99/301 (32%), Gaps = 46/301 (15%)
Query: 18 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 77
++D+ + +++ A P V + V+ G ++ G R
Sbjct: 30 LVDL--DRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRL 86
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 137
++ +N ++ + + AP +LV NP + + L+ L
Sbjct: 87 QLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LSGLP 133
Query: 138 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 185
R +G ++E L+V V ++ G H ++ + A V G
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV----GGV 188
Query: 186 PVREAVADDNWLNT-----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
P+ E + V++ II+ + + + + +L
Sbjct: 189 PLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG--ATYYGIGAGLARLVRAILTDE 246
Query: 241 KGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 298
KG + VS ++ G+ + S P + G V + RA + +AE L
Sbjct: 247 KGVYTVS--AFTPEVAGV-LEVSLSLPRILGAGGVAGTVY-PSLSPEERAALRRSAEILK 302
Query: 299 E 299
E
Sbjct: 303 E 303
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 71.0 bits (175), Expect = 3e-14
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 43/264 (16%)
Query: 54 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
C D ++ V+ G +K G R D++SKN+ I+K+ + + LV NP +
Sbjct: 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 161
A + + L R +G +SE V V II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 162 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 217
G H T+ P +HA + +P++ + + I + + II+A+
Sbjct: 177 -GEHGDTELPVWSHANI----AGQPLKT-LLEQRPEGKAQIEQIFVQTRDAAYDIIQAKG 230
Query: 218 LSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWS 275
+ + I + + VS +G Y E + P V G +
Sbjct: 231 --ATYYGVAMGLARITEAIFRNEDAVLTVS--ALLEGEYEE-EDVYIGVPAVINRNGIRN 285
Query: 276 IVKGLKVDEFSRAKMDATAEELAE 299
+V+ + +++ ++K +A+ L +
Sbjct: 286 VVE-IPLNDEEQSKFAHSAKTLKD 308
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 71.0 bits (175), Expect = 3e-14
Identities = 56/302 (18%), Positives = 113/302 (37%), Gaps = 50/302 (16%)
Query: 18 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 77
++D+ + G ++L DA + CKD ++ V+ G P+K G R
Sbjct: 35 IVDV--VKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRL 91
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 137
D+++KN++I + + + LV ANP + + +
Sbjct: 92 DLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWK------------FSGFP 138
Query: 138 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 185
R +G + ++ V V I+ G H +++ + AT+ G +
Sbjct: 139 KERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI----GTR 193
Query: 186 PVREAVADDNWLNTEFITTVQQR---GAAIIKARKLSS----ALSAASSACDHIRDWVLG 238
PVR+ VA + ++ + + ++ A I K ++ + + +RD
Sbjct: 194 PVRD-VAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRD---- 248
Query: 239 TPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEEL 297
+ + +G Y DG YG+ + P + G I++ + KM +A L
Sbjct: 249 --ENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQDSAATL 304
Query: 298 AE 299
+
Sbjct: 305 KK 306
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 71.1 bits (175), Expect = 3e-14
Identities = 59/295 (20%), Positives = 107/295 (36%), Gaps = 34/295 (11%)
Query: 16 LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGME 75
L + DI P GV ++L + + D A + ++ ++ G RK GM+
Sbjct: 30 LSLYDIAPVTP---GVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMD 86
Query: 76 RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNIT 131
R D+ + N I K + K P + ++ NP NT A +LK+ A +
Sbjct: 87 RSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLF 144
Query: 132 CLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAV 191
+T LD R+ ++E +V+ +I G+ T P + + E
Sbjct: 145 GVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILP------LLSQVPGVSFTEQE 198
Query: 192 ADDNWLNTEFITTVQQRGAAIIKARK------LSSALSAASSACDHIRDWVLGTPKGTWV 245
+ +Q G +++A+ LS +AA +R L +G
Sbjct: 199 VA------DLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRA--LQGEQGVVE 250
Query: 246 SMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGL-KVDEFSRAKMDATAEELAE 299
V DG +S P+ K K + + F + ++ + L +
Sbjct: 251 CAYVEGDG----QYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK 301
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 71.0 bits (175), Expect = 3e-14
Identities = 59/286 (20%), Positives = 109/286 (38%), Gaps = 44/286 (15%)
Query: 33 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 92
M++ P + + KD ++ V+ G RK G R D+ KNV I K
Sbjct: 50 MDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 108
Query: 93 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 144
+ K+ + +LVV+NP + ++++ + L + +G
Sbjct: 109 NIMKY-YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIR 155
Query: 145 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT- 199
+SE+L V V +V II G H +Q P + + K + E + D T
Sbjct: 156 FRYLLSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTE 210
Query: 200 ----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGS 254
+ V+ GA IIK + + + + I + +L V +G
Sbjct: 211 EDKKKIAEDVKTAGATIIK--NKGATYYGIAVSINTIVETLLKNQNTIRTVG--TVINGM 266
Query: 255 YGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 299
YGI E + S P + +G +++ + + +AE++ +
Sbjct: 267 YGI-EDVAISLPSIVNSEGVQEVLQ-FNLTPEEEEALRFSAEQVKK 310
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 70.2 bits (173), Expect = 5e-14
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 22/205 (10%)
Query: 18 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGM 74
++D + AEA ++ AA P+ G D + ++ G +K G
Sbjct: 30 LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83
Query: 75 ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 134
R D++ KN I++ + + AP+ +LV +NP + + + AP I T
Sbjct: 84 SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140
Query: 135 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD 194
LD R +++ V + ++ G H ++ + A V PV + +
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV----AGMPVADFMQAQ 195
Query: 195 NWLNTEF-----ITTVQQRGAAIIK 214
N E + A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 59.8 bits (146), Expect = 2e-10
Identities = 25/216 (11%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 18 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPR---- 70
+D A A+ ++ DA L + A D ++ + G +
Sbjct: 31 FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85
Query: 71 KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 130
+R + S+ ++ + L++ + ++V++NP + + +
Sbjct: 86 NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134
Query: 131 TCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV 178
+T ++ +G + E + V + G H ++Q+ + V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191
Query: 179 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 214
+P+ + ++ G ++
Sbjct: 192 ----MGQPIVTLADAGDIDLAAIEEEARKGGFTVLN 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 6e-04
Identities = 52/357 (14%), Positives = 112/357 (31%), Gaps = 102/357 (28%)
Query: 20 DIEPAAEALNGVKMELIDAAFPLLKGVVA----------TTDVVEAC-----------KD 58
D EP A EL+ F L G V+ V+ C D
Sbjct: 51 DDEPTTPA------ELV-GKF--L-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 59 VN-IAVMVGGFPRKEGMERKDV--------MSKNVSIYKAQASALEKHA-APNCKVLVV- 107
++ +A + ++ K++ + K SAL + N +++ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 108 ---ANPA----------NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVS 154
N T +++ + A+ ++ L R + +E++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLD------AEKVFTQGL 213
Query: 155 DVKNVIIWGNHSSTQYPDVNH-ATVTTSKGEKPVREAVADDNWLNT---------EFITT 204
++ W + S PD ++ ++ S P+ + +++ T E +
Sbjct: 214 NILE---WLENPSNT-PDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 205 VQ---QRGAAIIKARKLSSALSAAS--SACDHIRDWVLGTPKGTWVSMGVYSDGSYGI-- 257
++ ++ A ++ S S + + ++ GV +Y
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF------FI--GVRCYEAYPNTS 318
Query: 258 --PEGLIYSFPVTCEKGEWS---IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 309
P L S + +G S + L E + ++ T L K + S +N
Sbjct: 319 LPPSILEDS--LENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVN 372
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 40.1 bits (93), Expect = 7e-04
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 31/203 (15%)
Query: 16 LHMLDIEPAAEALNGVKM--ELIDAAFPLLKGVVATTDVVEACKDVN---IAVMVGGF-- 68
L ++DI E L V + + + + T D A + VGG
Sbjct: 39 LWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEA 98
Query: 69 -------PRKEGMERKDVMS--------KNVSIYKAQASALEKHAAPNCKVLVVANPANT 113
P K G+ ++ + + + +E+ P+ ++ NPA
Sbjct: 99 RAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGM 157
Query: 114 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
+ + + C +++ L V V NH
Sbjct: 158 VTEAVLRYTKQEKVVGL-CNV---PIGMRMGVAKLLGVDADRVHIDFAGLNHMVF----G 209
Query: 174 NHATVTTSKGEKPVREAVADDNW 196
H + + + V + VA +
Sbjct: 210 LHVYLDGVEVTEKVIDLVAHPDR 232
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 39.8 bits (92), Expect = 0.001
Identities = 38/226 (16%), Positives = 72/226 (31%), Gaps = 32/226 (14%)
Query: 6 IMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN---I 61
+ + P+ L + D + + ++ ATTD EA DV+
Sbjct: 49 LDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA 108
Query: 62 AVMVGGF---------PRKEGMERKDVMS--------KNVSIYKAQASALEKHAAPNCKV 104
+ VG + P K G+ ++ +++ +EK++ P+ +
Sbjct: 109 HIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWM 167
Query: 105 LVVANPANTNALILKEFAPSIPAKNIT----CLTRLDHNRAMGQISERLKVHVSDVKNVI 160
L +NPA A + P+ NI + + +KV + +
Sbjct: 168 LNYSNPAAIVAEATRRLRPNSKILNICDMPVGIEDRMAQILGLSSRKEMKVRYYGLNHFG 227
Query: 161 ----IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFI 202
I + P + + G P EA A + N F
Sbjct: 228 WWTSIQDQEGNDLMPKLKEH--VSQYGYIPKTEAEAVEASWNDTFA 271
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 38.2 bits (88), Expect = 0.002
Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 31/190 (16%)
Query: 2 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKG-VVATTDVVEACKDVN 60
+ + + + + D++ EA K E+I + A + + +A +
Sbjct: 22 LMSDLSIDERMSGTVALYDLDF--EAAQ--KNEVIGNHSGNGRWRYEAVSTLKKALSAAD 77
Query: 61 ---IAVMVGGF---------PRKEGMERKDVMS----------KNVSIYKAQASALEKHA 98
I+++ G P + G+ + + + V I+ A A+ +A
Sbjct: 78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA 137
Query: 99 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN---RAMGQISERLKVHVSD 155
P V+ NP + +L + P I A + + D
Sbjct: 138 -PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRRED 196
Query: 156 VKNVIIWGNH 165
++ ++ NH
Sbjct: 197 IRVNVLGINH 206
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 36.6 bits (84), Expect = 0.009
Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 6 IMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---VNI 61
+ + D + + DI+ + + ++ + V+ + A D V
Sbjct: 23 LDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFK---VLISDTFEGAVVDAKYVIF 79
Query: 62 AVMVGGF---------PRKEGMERKD------VMSKNVSIYKAQASALEKHAAPNCKVLV 106
GG P K G+ ++ + + + N ++
Sbjct: 80 QFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVN 139
Query: 107 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 165
NP+ ++ + + C + +I+E + DV NH
Sbjct: 140 FTNPSGHITEFVRNYLEYEKFIGL-CNV---PINFIREIAEMFSARLEDVFLKYYGLNH 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.26
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 45/127 (35%)
Query: 78 DVMSKNVSIYKAQASALEKHAAPNCKVLVV-ANPANTNAL------------ILKEFAP- 123
+V + +A +CK+L+ T+ L P
Sbjct: 252 NVQNAKA------WNAFN----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 124 ---SIPAKNITC----LTR--LDHN-RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 173
S+ K + C L R L N R + I+E ++ ++ W N + V
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA------TWDN-----WKHV 350
Query: 174 NHATVTT 180
N +TT
Sbjct: 351 NCDKLTT 357
Score = 29.1 bits (64), Expect = 2.4
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 117 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 176
IL F + N C D +++ +S+ ++ ++I D
Sbjct: 21 ILSVFEDAF-VDNFDCKDVQDMPKSI--LSKE------EIDHII--------MSKDAVSG 63
Query: 177 T-----VTTSKGEKPVREAVADD-----NWLNTEFITTVQQR 208
T SK E+ V++ V + +L + T +Q
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 31.4 bits (72), Expect = 0.32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 40 FPLLKGVVATTDVVEACKDVNIAVMV 65
L VVA DVV+A +D +I + V
Sbjct: 72 HKLPPNVVAVPDVVQAAEDADILIFV 97
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 31.5 bits (72), Expect = 0.34
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 40 FPLLKGVVATTDVVEACKDVNIAVMV 65
PL +VA +D+ D ++ + +
Sbjct: 85 VPLPHNIVAHSDLASVINDADLLIFI 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.44
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 27/47 (57%)
Query: 82 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPA 127
K ++ K QAS LK +A S PA
Sbjct: 19 KQ-ALKKLQAS-------------------------LKLYADDSAPA 39
Score = 26.8 bits (58), Expect = 7.3
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 9/25 (36%)
Query: 206 QQRGAAIIKARKLSSALS--AASSA 228
Q +K KL ++L A SA
Sbjct: 20 QA-----LK--KLQASLKLYADDSA 37
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 30.3 bits (69), Expect = 0.89
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 242 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLK-------VDEFSRAKMDATA 294
GTW MG S + L + T E G + LK + + +
Sbjct: 258 GTWSLMGFESQTPFTNDTALAANI--TNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDL 315
Query: 295 EELAEE 300
L
Sbjct: 316 PALIAA 321
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 29.2 bits (65), Expect = 1.6
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 46 VVATTDVVEACK-DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 93
V+ D +E D +I V VG R + + + + V + SA
Sbjct: 187 VIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSA 235
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 29.0 bits (66), Expect = 1.8
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 101 NCKVLVVA-NPANTNAL-ILKEFAPSIP 126
K +++A N + A I++E A +IP
Sbjct: 69 EVKAIIIACNTISAIAKDIVQEIAKAIP 96
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 29.1 bits (64), Expect = 2.4
Identities = 27/190 (14%), Positives = 48/190 (25%), Gaps = 32/190 (16%)
Query: 2 IARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD-- 58
+ + P + ++DI+ + T ++ + D
Sbjct: 20 LVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79
Query: 59 -VNIAVMVGGFPRKEGMERKD----------------VMSKNVSIYKAQASALEKHA--- 98
V MVGG E + + V Q A
Sbjct: 80 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKI 139
Query: 99 ---APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 155
+P L ANP ++ I A + + +I E+L +
Sbjct: 140 EKLSPKAWYLQAANPIFEGTTLVTRT-VPIKAVGFC-----HGHYGVMEIVEKLGLEEEK 193
Query: 156 VKNVIIWGNH 165
V + NH
Sbjct: 194 VDWQVAGVNH 203
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 28.7 bits (64), Expect = 2.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 87 YKAQASALEKHAAPNCKVLVVANPAN 112
++ S L+K P K+ NP+N
Sbjct: 231 WQYPDSELDKLKDPAIKIFFCVNPSN 256
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 28.7 bits (64), Expect = 2.9
Identities = 12/141 (8%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 91 ASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 150
L++ + + + L+ E A ++ ++ R ++ +
Sbjct: 330 KEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLED 389
Query: 151 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 210
+ +D ++ G+ + P ++ + KP + + + + +R
Sbjct: 390 LLQADF--ALVLGDPTEEA-PILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTD 446
Query: 211 AIIKARKLSSALSAASSACDH 231
+ + L ++ +
Sbjct: 447 KMALFAPYRAPLMKWAAIHEV 467
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 28.2 bits (64), Expect = 3.4
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 86 IYKAQASALEKHAAPNCKVLVVANPAN-TNALILKEFAPSIPAKNITCLT 134
+LE+ + K +++ +P+N +I +E ++
Sbjct: 139 FCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIIS 188
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 27.5 bits (62), Expect = 6.0
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 87 YKAQASALEKHAAPNCKVLVVANPAN-TNALILKEF 121
+ L + P K++ + N N T A++ + +
Sbjct: 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTY 175
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural
genomics, joint center for structural genomics, JCSG;
HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Length = 114
Score = 26.2 bits (58), Expect = 6.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 8 LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 57
L PD P++L ++D E ++ ID + + T V K
Sbjct: 70 LSPDLPIVLEIVDEEERINLF----LKEID---NIDFDGLVFTADVNVVK 112
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 27.3 bits (61), Expect = 6.8
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 87 YKAQASALEKHAAPNCKVLVVANPAN-TNALI----LKEFAPSIPAKNITCLT 134
K + ++ +NP N T + L+ ++ +
Sbjct: 168 EKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG;
2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB:
1ib4_A*
Length = 339
Score = 27.4 bits (61), Expect = 6.8
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 219 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVK 278
+S+ S + ++C I + P GT + + +DG++ I G +F G V
Sbjct: 12 ASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGET-TFGYKEWSGPLISVS 70
Query: 279 GLKV 282
G +
Sbjct: 71 GSDL 74
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 27.1 bits (61), Expect = 7.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 34 ELIDAAFPLLKGVVATTDV------VEACKDVNIAVM 64
++DAA LK V++T V ++ K I V
Sbjct: 68 RILDAAGANLK-VISTMSVGIDHLALDEIKKRGIRVG 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,692,810
Number of extensions: 283672
Number of successful extensions: 791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 72
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)