Query 021648
Match_columns 309
No_of_seqs 153 out of 1550
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-50 6.1E-55 326.0 36.2 303 1-304 4-309 (311)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-50 2.3E-55 335.4 25.2 285 5-295 109-478 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4E-49 8.7E-54 329.5 21.8 280 8-297 172-459 (459)
4 KOG0286 G-protein beta subunit 100.0 7.2E-44 1.6E-48 285.7 32.6 285 2-295 46-342 (343)
5 KOG0315 G-protein beta subunit 100.0 3.1E-43 6.7E-48 276.3 27.4 278 24-308 11-299 (311)
6 KOG0265 U5 snRNP-specific prot 100.0 1.5E-42 3.2E-47 279.0 26.4 290 2-299 38-337 (338)
7 KOG0279 G protein beta subunit 100.0 3.4E-40 7.3E-45 263.0 30.5 283 2-297 6-312 (315)
8 KOG0316 Conserved WD40 repeat- 100.0 2.7E-41 5.8E-46 263.5 23.5 285 4-298 10-299 (307)
9 KOG0318 WD40 repeat stress pro 100.0 2.7E-39 5.8E-44 277.3 33.7 302 1-306 180-566 (603)
10 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-41 4.7E-46 283.2 18.8 245 2-256 208-458 (459)
11 KOG0266 WD40 repeat-containing 100.0 4.7E-38 1E-42 285.2 32.6 290 5-299 152-453 (456)
12 KOG0263 Transcription initiati 100.0 6.6E-39 1.4E-43 286.7 23.0 249 5-302 372-651 (707)
13 KOG0271 Notchless-like WD40 re 100.0 7.3E-39 1.6E-43 265.2 21.1 257 44-308 106-450 (480)
14 cd00200 WD40 WD40 domain, foun 100.0 1.7E-36 3.7E-41 257.3 35.3 284 4-297 2-288 (289)
15 KOG0295 WD40 repeat-containing 100.0 5.6E-38 1.2E-42 258.5 24.0 284 3-296 100-404 (406)
16 KOG0279 G protein beta subunit 100.0 2.1E-37 4.6E-42 247.1 26.2 249 2-259 54-314 (315)
17 KOG0293 WD40 repeat-containing 100.0 3.1E-38 6.7E-43 263.8 21.2 287 5-301 218-514 (519)
18 KOG0282 mRNA splicing factor [ 100.0 2.4E-38 5.1E-43 269.1 18.9 288 2-297 205-502 (503)
19 KOG0263 Transcription initiati 100.0 9.6E-38 2.1E-42 279.3 22.5 207 4-259 444-650 (707)
20 KOG0284 Polyadenylation factor 100.0 2.2E-37 4.9E-42 258.2 16.9 282 11-303 96-383 (464)
21 KOG0645 WD40 repeat protein [G 100.0 1.1E-34 2.5E-39 230.6 30.9 281 3-296 6-309 (312)
22 KOG0647 mRNA export protein (c 100.0 1E-35 2.2E-40 239.9 24.9 274 10-290 26-313 (347)
23 KOG0285 Pleiotropic regulator 100.0 6.5E-36 1.4E-40 245.9 23.4 284 2-297 142-436 (460)
24 KOG0315 G-protein beta subunit 100.0 7.7E-35 1.7E-39 229.1 27.8 268 5-279 34-309 (311)
25 PLN00181 protein SPA1-RELATED; 100.0 1.8E-34 4E-39 279.3 36.8 282 7-299 479-792 (793)
26 KOG0319 WD40-repeat-containing 100.0 2.5E-35 5.4E-40 261.8 25.5 293 2-298 95-577 (775)
27 KOG0273 Beta-transducin family 100.0 5.6E-35 1.2E-39 247.8 24.6 255 2-299 267-522 (524)
28 KOG0273 Beta-transducin family 100.0 2.1E-34 4.5E-39 244.4 26.6 278 9-297 176-481 (524)
29 KOG0291 WD40-repeat-containing 100.0 1.2E-33 2.5E-38 251.7 32.0 291 10-309 264-562 (893)
30 KOG0286 G-protein beta subunit 100.0 6.7E-34 1.5E-38 228.4 27.1 238 10-256 96-343 (343)
31 KOG0292 Vesicle coat complex C 100.0 2.2E-34 4.8E-39 260.1 27.2 295 5-303 3-326 (1202)
32 KOG0288 WD40 repeat protein Ti 100.0 1.1E-35 2.3E-40 248.5 17.4 282 5-295 169-458 (459)
33 KOG0291 WD40-repeat-containing 100.0 3E-33 6.6E-38 249.1 31.4 282 2-294 298-606 (893)
34 KOG0295 WD40 repeat-containing 100.0 2.4E-34 5.2E-39 237.1 21.1 246 2-257 141-405 (406)
35 KOG1036 Mitotic spindle checkp 100.0 4.4E-33 9.5E-38 225.3 25.9 272 11-290 13-294 (323)
36 KOG0278 Serine/threonine kinas 100.0 1.3E-34 2.8E-39 228.0 15.1 249 4-263 52-302 (334)
37 KOG0306 WD40-repeat-containing 100.0 5E-33 1.1E-37 247.6 25.9 284 5-301 367-665 (888)
38 KOG1407 WD40 repeat protein [F 100.0 1.2E-32 2.5E-37 218.2 25.2 275 5-291 14-293 (313)
39 KOG0296 Angio-associated migra 100.0 2.4E-32 5.2E-37 225.4 27.0 284 2-294 97-392 (399)
40 KOG0318 WD40 repeat stress pro 100.0 1.2E-31 2.6E-36 230.4 32.1 284 6-297 142-516 (603)
41 KOG0313 Microtubule binding pr 100.0 1.5E-32 3.3E-37 227.5 25.1 280 9-300 103-418 (423)
42 KOG0282 mRNA splicing factor [ 100.0 3.5E-34 7.5E-39 243.8 15.6 246 2-256 249-503 (503)
43 KOG0266 WD40 repeat-containing 100.0 2E-32 4.4E-37 248.4 27.4 247 3-258 195-454 (456)
44 KOG0278 Serine/threonine kinas 100.0 2.7E-33 5.8E-38 220.6 18.2 284 3-301 6-300 (334)
45 KOG0276 Vesicle coat complex C 100.0 1.5E-32 3.3E-37 240.2 24.4 279 2-290 4-289 (794)
46 KOG0319 WD40-repeat-containing 100.0 4.7E-32 1E-36 241.1 26.0 285 2-297 314-616 (775)
47 KOG0283 WD40 repeat-containing 100.0 2.9E-32 6.3E-37 246.0 24.0 244 5-298 260-574 (712)
48 KOG0284 Polyadenylation factor 100.0 1.3E-33 2.8E-38 235.8 13.7 243 7-259 134-381 (464)
49 KOG0281 Beta-TrCP (transducin 100.0 1.9E-33 4.1E-38 230.8 14.4 266 10-298 196-477 (499)
50 KOG0772 Uncharacterized conser 100.0 6.5E-32 1.4E-36 231.6 23.6 283 5-291 161-478 (641)
51 PTZ00421 coronin; Provisional 100.0 1.2E-30 2.5E-35 236.7 31.1 231 6-283 70-316 (493)
52 KOG0275 Conserved WD40 repeat- 100.0 8.2E-32 1.8E-36 219.6 18.1 282 9-296 211-507 (508)
53 KOG0276 Vesicle coat complex C 100.0 8.3E-31 1.8E-35 229.4 24.5 265 4-291 48-319 (794)
54 KOG0281 Beta-TrCP (transducin 100.0 4E-32 8.8E-37 223.0 14.7 244 3-263 229-482 (499)
55 KOG0643 Translation initiation 100.0 2.4E-30 5.3E-35 205.7 22.7 278 6-294 5-311 (327)
56 KOG0265 U5 snRNP-specific prot 100.0 5.8E-30 1.3E-34 206.5 23.2 246 4-255 83-335 (338)
57 KOG0316 Conserved WD40 repeat- 100.0 4.3E-30 9.3E-35 200.9 21.4 244 46-301 10-258 (307)
58 KOG0292 Vesicle coat complex C 100.0 4.7E-30 1E-34 232.3 24.7 248 3-259 43-322 (1202)
59 cd00200 WD40 WD40 domain, foun 100.0 8.3E-29 1.8E-33 210.0 31.2 244 3-256 43-289 (289)
60 KOG0274 Cdc4 and related F-box 100.0 9.5E-30 2.1E-34 231.3 25.9 251 4-270 241-494 (537)
61 KOG2096 WD40 repeat protein [G 100.0 1.2E-29 2.7E-34 206.3 23.7 285 4-294 79-398 (420)
62 KOG0274 Cdc4 and related F-box 100.0 2.3E-29 4.9E-34 228.8 27.5 271 10-299 207-481 (537)
63 KOG0285 Pleiotropic regulator 100.0 6.7E-30 1.5E-34 210.6 21.3 238 48-297 146-388 (460)
64 PTZ00420 coronin; Provisional 100.0 8.5E-29 1.8E-33 225.9 30.8 238 3-283 66-319 (568)
65 KOG0277 Peroxisomal targeting 100.0 2.6E-30 5.6E-35 204.2 18.0 239 11-257 60-308 (311)
66 KOG0293 WD40 repeat-containing 100.0 2.3E-30 5E-35 216.8 18.6 248 1-259 259-514 (519)
67 KOG0294 WD40 repeat-containing 100.0 4.6E-29 9.9E-34 202.6 25.5 260 3-277 35-304 (362)
68 PLN00181 protein SPA1-RELATED; 100.0 1.3E-28 2.9E-33 238.5 33.6 244 10-257 531-792 (793)
69 KOG0289 mRNA splicing factor [ 100.0 7.2E-29 1.6E-33 209.0 26.5 275 12-295 220-501 (506)
70 KOG0296 Angio-associated migra 100.0 2E-28 4.4E-33 202.3 27.9 296 4-308 57-367 (399)
71 KOG0640 mRNA cleavage stimulat 100.0 9E-30 2E-34 206.4 19.6 248 5-297 106-423 (430)
72 KOG0313 Microtubule binding pr 100.0 4.8E-29 1E-33 206.9 23.5 249 1-258 134-418 (423)
73 KOG0308 Conserved WD40 repeat- 100.0 4.2E-30 9.1E-35 225.8 18.0 255 9-302 19-287 (735)
74 KOG0310 Conserved WD40 repeat- 100.0 5.3E-29 1.2E-33 212.5 23.1 248 3-259 60-310 (487)
75 KOG0288 WD40 repeat protein Ti 100.0 1.8E-29 3.9E-34 211.4 17.9 245 2-255 210-458 (459)
76 KOG1407 WD40 repeat protein [F 100.0 8.4E-29 1.8E-33 196.3 20.4 240 47-297 14-258 (313)
77 KOG0275 Conserved WD40 repeat- 100.0 7E-30 1.5E-34 208.3 14.3 242 6-256 258-507 (508)
78 KOG0268 Sof1-like rRNA process 100.0 1.2E-29 2.7E-34 209.3 15.7 284 4-305 59-353 (433)
79 KOG0310 Conserved WD40 repeat- 100.0 4.3E-28 9.3E-33 207.0 23.4 272 11-294 26-303 (487)
80 KOG0306 WD40-repeat-containing 100.0 9E-28 2E-32 214.3 26.1 286 2-298 98-484 (888)
81 KOG0641 WD40 repeat protein [G 100.0 1E-26 2.2E-31 181.2 26.7 248 8-296 86-347 (350)
82 PTZ00420 coronin; Provisional 100.0 8.5E-27 1.8E-31 212.8 30.5 224 28-298 49-293 (568)
83 PTZ00421 coronin; Provisional 100.0 7.6E-27 1.7E-31 211.9 29.8 241 11-299 20-289 (493)
84 KOG0299 U3 snoRNP-associated p 100.0 3.3E-27 7.1E-32 200.3 25.0 277 5-291 136-447 (479)
85 KOG0645 WD40 repeat protein [G 100.0 4.4E-27 9.5E-32 187.5 24.1 238 8-258 58-311 (312)
86 KOG0305 Anaphase promoting com 100.0 1.7E-27 3.7E-32 209.9 24.1 241 5-297 211-460 (484)
87 KOG0277 Peroxisomal targeting 100.0 7E-28 1.5E-32 190.5 18.3 274 15-297 12-308 (311)
88 KOG0643 Translation initiation 100.0 2.3E-25 5E-30 177.4 25.9 236 49-290 6-251 (327)
89 KOG0973 Histone transcription 100.0 6.3E-26 1.4E-30 210.1 26.2 294 7-306 8-363 (942)
90 KOG0300 WD40 repeat-containing 100.0 4.7E-26 1E-30 185.5 21.8 283 3-297 140-473 (481)
91 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.4E-24 1.4E-28 183.0 35.5 267 23-299 1-280 (300)
92 KOG0267 Microtubule severing p 99.9 4.5E-28 9.7E-33 215.4 9.6 238 5-291 22-259 (825)
93 KOG0299 U3 snoRNP-associated p 99.9 3.1E-26 6.7E-31 194.4 20.1 239 8-255 199-453 (479)
94 KOG0973 Histone transcription 99.9 1.1E-25 2.3E-30 208.6 23.8 250 3-261 61-358 (942)
95 KOG0301 Phospholipase A2-activ 99.9 3E-25 6.4E-30 196.8 25.5 277 2-299 5-289 (745)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-23 2.6E-28 181.2 35.1 266 3-280 23-300 (300)
97 KOG0289 mRNA splicing factor [ 99.9 6.8E-25 1.5E-29 185.1 24.9 246 3-257 253-505 (506)
98 KOG0300 WD40 repeat-containing 99.9 6.8E-26 1.5E-30 184.6 17.9 249 4-260 183-478 (481)
99 KOG0264 Nucleosome remodeling 99.9 2.5E-25 5.5E-30 188.7 21.5 244 9-298 122-404 (422)
100 KOG0283 WD40 repeat-containing 99.9 1E-25 2.2E-30 203.9 19.7 215 2-258 360-576 (712)
101 KOG0268 Sof1-like rRNA process 99.9 7.6E-26 1.7E-30 187.0 15.0 249 2-264 100-351 (433)
102 KOG0640 mRNA cleavage stimulat 99.9 2.1E-25 4.6E-30 181.1 16.8 249 3-258 164-426 (430)
103 KOG1332 Vesicle coat complex C 99.9 3.3E-25 7.2E-30 174.4 17.3 247 8-300 8-288 (299)
104 KOG1408 WD40 repeat protein [F 99.9 7.6E-25 1.6E-29 194.9 21.1 288 7-299 365-712 (1080)
105 KOG0639 Transducin-like enhanc 99.9 5.2E-25 1.1E-29 188.9 16.5 229 11-291 465-695 (705)
106 KOG1446 Histone H3 (Lys4) meth 99.9 6.5E-23 1.4E-27 167.1 27.8 244 47-299 8-261 (311)
107 KOG1539 WD repeat protein [Gen 99.9 3.1E-23 6.8E-28 187.4 28.6 287 2-296 235-646 (910)
108 KOG2055 WD40 repeat protein [G 99.9 6.3E-24 1.4E-28 180.5 22.5 281 11-299 213-511 (514)
109 KOG0650 WD40 repeat nucleolar 99.9 8.1E-24 1.7E-28 185.0 23.0 285 3-295 392-732 (733)
110 KOG0641 WD40 repeat protein [G 99.9 9.3E-23 2E-27 159.2 26.0 257 10-301 31-304 (350)
111 KOG4283 Transcription-coupled 99.9 7.2E-24 1.6E-28 171.1 20.4 257 8-298 98-363 (397)
112 KOG0308 Conserved WD40 repeat- 99.9 1.5E-24 3.2E-29 191.2 17.3 245 4-297 66-326 (735)
113 KOG0301 Phospholipase A2-activ 99.9 1.2E-23 2.6E-28 186.6 21.9 234 6-259 52-289 (745)
114 KOG0321 WD40 repeat-containing 99.9 6E-24 1.3E-28 187.0 19.6 251 4-260 93-393 (720)
115 KOG0772 Uncharacterized conser 99.9 5.6E-24 1.2E-28 183.1 19.0 239 48-290 162-429 (641)
116 KOG1274 WD40 repeat protein [G 99.9 9.2E-23 2E-27 186.1 27.9 267 9-285 11-285 (933)
117 KOG2445 Nuclear pore complex c 99.9 1.9E-22 4E-27 163.8 24.3 246 9-258 11-318 (361)
118 KOG0321 WD40 repeat-containing 99.9 2.4E-23 5.3E-28 183.2 20.1 279 16-297 54-390 (720)
119 KOG2106 Uncharacterized conser 99.9 1.9E-21 4.2E-26 167.2 30.3 238 6-257 240-520 (626)
120 KOG0646 WD40 repeat protein [G 99.9 5.6E-23 1.2E-27 175.0 20.7 222 11-282 81-331 (476)
121 KOG1539 WD repeat protein [Gen 99.9 6.9E-22 1.5E-26 178.8 28.4 302 2-306 193-611 (910)
122 KOG0264 Nucleosome remodeling 99.9 3.2E-23 6.9E-28 176.0 18.8 213 3-259 169-405 (422)
123 KOG0305 Anaphase promoting com 99.9 7.2E-23 1.6E-27 180.8 21.5 240 17-309 183-431 (484)
124 KOG1063 RNA polymerase II elon 99.9 1.4E-22 2.9E-27 180.0 22.4 290 7-302 263-650 (764)
125 KOG0269 WD40 repeat-containing 99.9 5.3E-23 1.1E-27 184.6 16.1 233 14-292 90-332 (839)
126 KOG1273 WD40 repeat protein [G 99.9 2.3E-21 5E-26 158.0 23.5 276 14-297 26-321 (405)
127 KOG0267 Microtubule severing p 99.9 7.4E-24 1.6E-28 188.8 9.4 225 21-300 2-226 (825)
128 KOG0294 WD40 repeat-containing 99.9 2E-21 4.3E-26 158.3 22.1 238 46-299 36-280 (362)
129 KOG0647 mRNA export protein (c 99.9 2.2E-21 4.8E-26 157.2 22.2 235 5-249 66-315 (347)
130 KOG1063 RNA polymerase II elon 99.9 6.1E-21 1.3E-25 169.6 26.6 292 4-297 47-599 (764)
131 KOG4328 WD40 protein [Function 99.9 2.8E-21 6E-26 164.4 23.4 292 4-297 179-492 (498)
132 KOG2106 Uncharacterized conser 99.9 1.3E-20 2.8E-25 162.2 27.4 288 5-299 98-478 (626)
133 KOG0269 WD40 repeat-containing 99.9 1.6E-22 3.6E-27 181.5 16.1 241 12-301 40-297 (839)
134 KOG4283 Transcription-coupled 99.9 1.3E-21 2.8E-26 158.2 19.6 208 8-261 40-279 (397)
135 KOG1332 Vesicle coat complex C 99.9 6.6E-22 1.4E-26 155.9 16.1 211 2-258 47-286 (299)
136 KOG2096 WD40 repeat protein [G 99.9 6.5E-22 1.4E-26 161.5 16.2 215 80-298 63-306 (420)
137 KOG0302 Ribosome Assembly prot 99.9 2.6E-21 5.6E-26 161.0 19.1 244 7-297 147-437 (440)
138 KOG1445 Tumor-specific antigen 99.9 9.3E-22 2E-26 173.4 17.2 121 6-129 74-201 (1012)
139 KOG2919 Guanine nucleotide-bin 99.9 1.6E-20 3.4E-25 153.7 22.0 276 14-297 52-367 (406)
140 KOG0303 Actin-binding protein 99.9 7.5E-21 1.6E-25 159.2 20.4 206 6-216 76-297 (472)
141 KOG4378 Nuclear protein COP1 [ 99.9 4.7E-21 1E-25 164.6 19.3 258 13-282 36-305 (673)
142 KOG4227 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 157.7 21.0 297 6-308 51-396 (609)
143 KOG0646 WD40 repeat protein [G 99.9 2.8E-20 6E-25 158.7 23.0 268 26-300 10-307 (476)
144 KOG1036 Mitotic spindle checkp 99.9 2.7E-20 5.8E-25 151.4 21.1 229 9-248 52-294 (323)
145 COG2319 FOG: WD40 repeat [Gene 99.9 4.8E-18 1E-22 151.4 36.8 284 6-298 60-359 (466)
146 KOG0639 Transducin-like enhanc 99.9 3.9E-21 8.5E-26 165.3 15.7 234 55-301 421-667 (705)
147 KOG1274 WD40 repeat protein [G 99.9 6.8E-20 1.5E-24 167.6 23.7 218 10-243 55-285 (933)
148 KOG0644 Uncharacterized conser 99.9 4E-22 8.7E-27 180.3 9.0 269 2-291 181-459 (1113)
149 KOG2048 WD40 repeat protein [G 99.9 6.4E-19 1.4E-23 156.5 28.9 279 11-299 25-318 (691)
150 KOG2048 WD40 repeat protein [G 99.9 7.4E-19 1.6E-23 156.1 29.1 242 3-254 60-315 (691)
151 KOG0642 Cell-cycle nuclear pro 99.9 8E-21 1.7E-25 165.4 16.1 259 5-271 288-574 (577)
152 KOG1034 Transcriptional repres 99.9 2.6E-20 5.7E-25 152.6 18.0 247 10-259 88-384 (385)
153 KOG1408 WD40 repeat protein [F 99.9 2.7E-20 5.9E-25 166.1 17.5 242 11-259 459-714 (1080)
154 KOG4328 WD40 protein [Function 99.9 1.3E-19 2.9E-24 154.2 20.1 260 39-304 172-457 (498)
155 KOG0302 Ribosome Assembly prot 99.8 6.9E-20 1.5E-24 152.6 16.6 203 55-299 153-377 (440)
156 KOG0270 WD40 repeat-containing 99.8 2.1E-19 4.5E-24 152.5 18.7 236 23-264 192-455 (463)
157 KOG1273 WD40 repeat protein [G 99.8 3.5E-19 7.5E-24 145.4 19.1 235 56-298 26-280 (405)
158 COG2319 FOG: WD40 repeat [Gene 99.8 7.6E-17 1.7E-21 143.7 35.6 288 4-299 101-401 (466)
159 KOG2055 WD40 repeat protein [G 99.8 5.8E-19 1.3E-23 150.5 20.4 245 10-258 256-512 (514)
160 KOG1009 Chromatin assembly com 99.8 9E-19 1.9E-23 147.2 19.9 275 2-303 56-377 (434)
161 KOG0322 G-protein beta subunit 99.8 3.2E-19 7E-24 142.3 15.8 285 4-299 7-322 (323)
162 KOG4378 Nuclear protein COP1 [ 99.8 2E-18 4.2E-23 148.6 20.0 262 29-300 8-280 (673)
163 KOG1538 Uncharacterized conser 99.8 4.3E-18 9.3E-23 151.3 22.7 268 13-294 14-287 (1081)
164 KOG2445 Nuclear pore complex c 99.8 2.3E-17 4.9E-22 134.4 24.7 246 51-300 11-320 (361)
165 KOG1334 WD40 repeat protein [G 99.8 2.1E-19 4.6E-24 154.2 12.2 290 2-297 133-465 (559)
166 PRK11028 6-phosphogluconolacto 99.8 1E-15 2.2E-20 134.3 33.2 268 26-298 5-304 (330)
167 PRK01742 tolB translocation pr 99.8 2E-17 4.4E-22 149.8 22.7 220 5-281 197-426 (429)
168 KOG1034 Transcriptional repres 99.8 2E-17 4.3E-22 135.9 19.4 285 7-299 34-382 (385)
169 KOG1963 WD40 repeat protein [G 99.8 9.1E-17 2E-21 146.9 25.2 291 7-303 12-325 (792)
170 KOG1538 Uncharacterized conser 99.8 1.2E-17 2.5E-22 148.6 18.0 234 55-303 14-257 (1081)
171 KOG1007 WD repeat protein TSSC 99.8 1.9E-17 4E-22 133.9 17.3 242 5-296 57-357 (370)
172 KOG2110 Uncharacterized conser 99.8 6.2E-16 1.3E-20 129.0 26.6 237 10-259 4-249 (391)
173 PRK11028 6-phosphogluconolacto 99.8 2.1E-15 4.6E-20 132.2 30.9 268 3-278 27-327 (330)
174 KOG1310 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 147.1 13.1 226 3-264 42-309 (758)
175 KOG1517 Guanine nucleotide bin 99.8 2.6E-16 5.6E-21 146.3 24.2 283 11-298 1064-1381(1387)
176 KOG0771 Prolactin regulatory e 99.8 3.1E-17 6.7E-22 138.8 16.3 201 15-259 148-355 (398)
177 KOG0307 Vesicle coat complex C 99.8 8.7E-18 1.9E-22 157.3 13.7 242 12-261 65-330 (1049)
178 KOG1188 WD40 repeat protein [G 99.8 3E-17 6.5E-22 135.4 15.2 183 77-261 49-245 (376)
179 KOG0649 WD40 repeat protein [G 99.8 1.7E-15 3.7E-20 120.0 24.1 243 4-295 55-311 (325)
180 KOG0307 Vesicle coat complex C 99.8 7.7E-18 1.7E-22 157.6 12.7 272 16-295 11-324 (1049)
181 KOG0270 WD40 repeat-containing 99.8 5.1E-17 1.1E-21 138.2 16.4 206 8-217 240-453 (463)
182 KOG1188 WD40 repeat protein [G 99.7 6.4E-17 1.4E-21 133.5 15.5 257 2-258 61-346 (376)
183 PRK03629 tolB translocation pr 99.7 3.7E-15 8E-20 134.9 26.5 223 5-281 192-428 (429)
184 KOG0290 Conserved WD40 repeat- 99.7 8.7E-16 1.9E-20 124.4 19.4 246 13-303 46-321 (364)
185 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.6E-21 139.7 15.5 272 17-299 234-560 (577)
186 KOG1963 WD40 repeat protein [G 99.7 1.3E-14 2.9E-19 132.8 28.2 286 9-299 203-539 (792)
187 KOG2919 Guanine nucleotide-bin 99.7 7.7E-16 1.7E-20 126.4 17.4 222 21-249 121-361 (406)
188 PRK01742 tolB translocation pr 99.7 2.8E-15 6.1E-20 135.8 23.0 204 31-291 182-392 (429)
189 KOG1009 Chromatin assembly com 99.7 3.2E-16 6.9E-21 132.1 15.1 213 12-290 14-250 (434)
190 KOG1524 WD40 repeat-containing 99.7 3.6E-16 7.8E-21 136.0 15.3 118 5-127 98-215 (737)
191 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.4E-19 132.5 25.6 264 32-300 221-516 (555)
192 KOG2321 WD40 repeat protein [G 99.7 3.5E-15 7.5E-20 130.9 20.5 260 2-301 43-347 (703)
193 PRK04922 tolB translocation pr 99.7 1.4E-14 3.1E-19 131.4 24.8 225 4-280 196-432 (433)
194 KOG0303 Actin-binding protein 99.7 4.5E-16 9.7E-21 130.8 13.3 173 92-304 75-253 (472)
195 KOG2111 Uncharacterized conser 99.7 2.4E-13 5.1E-18 111.7 28.5 239 13-260 7-258 (346)
196 KOG0771 Prolactin regulatory e 99.7 8.2E-16 1.8E-20 130.2 14.2 189 57-291 148-345 (398)
197 KOG4497 Uncharacterized conser 99.7 1.8E-14 3.8E-19 118.8 21.3 274 16-299 13-392 (447)
198 KOG1272 WD40-repeat-containing 99.7 2.7E-16 5.9E-21 134.6 10.6 229 15-297 133-361 (545)
199 KOG0650 WD40 repeat nucleolar 99.7 5.7E-15 1.2E-19 130.1 17.9 251 47-309 394-701 (733)
200 KOG1445 Tumor-specific antigen 99.7 2.2E-15 4.8E-20 133.6 14.8 225 11-280 627-869 (1012)
201 PRK02889 tolB translocation pr 99.7 9.8E-14 2.1E-18 125.7 25.6 223 5-281 189-425 (427)
202 PRK05137 tolB translocation pr 99.7 1.4E-13 3.1E-18 125.1 26.4 225 4-281 194-433 (435)
203 KOG1007 WD repeat protein TSSC 99.6 1.2E-14 2.6E-19 117.8 16.6 206 4-259 115-362 (370)
204 KOG2110 Uncharacterized conser 99.6 2.1E-13 4.6E-18 114.0 23.1 225 57-297 9-247 (391)
205 KOG2394 WD40 protein DMR-N9 [G 99.6 6.4E-15 1.4E-19 128.3 14.6 165 98-280 219-384 (636)
206 PRK04922 tolB translocation pr 99.6 2.1E-13 4.7E-18 123.8 25.3 215 33-299 184-410 (433)
207 PF02239 Cytochrom_D1: Cytochr 99.6 2.9E-12 6.2E-17 113.2 31.4 269 2-285 27-365 (369)
208 KOG0290 Conserved WD40 repeat- 99.6 7.2E-14 1.6E-18 113.4 19.3 230 9-248 94-356 (364)
209 PRK05137 tolB translocation pr 99.6 5.3E-13 1.1E-17 121.4 27.4 216 33-300 182-412 (435)
210 PRK03629 tolB translocation pr 99.6 6.9E-13 1.5E-17 120.1 27.9 207 33-291 179-394 (429)
211 KOG1523 Actin-related protein 99.6 9.4E-14 2E-18 114.1 19.6 240 5-290 4-268 (361)
212 KOG1517 Guanine nucleotide bin 99.6 7.1E-14 1.5E-18 130.4 20.6 244 56-306 1067-1341(1387)
213 KOG0649 WD40 repeat protein [G 99.6 8.6E-14 1.9E-18 110.4 16.7 212 13-297 12-234 (325)
214 KOG1240 Protein kinase contain 99.6 3.5E-13 7.6E-18 127.6 23.6 264 2-301 1039-1335(1431)
215 PRK02889 tolB translocation pr 99.6 1.1E-12 2.5E-17 118.8 25.6 206 33-290 176-390 (427)
216 PF02239 Cytochrom_D1: Cytochr 99.6 1.2E-11 2.6E-16 109.2 30.2 256 26-288 9-333 (369)
217 KOG1524 WD40 repeat-containing 99.6 1.8E-13 3.9E-18 119.5 17.7 260 9-295 12-281 (737)
218 TIGR02800 propeller_TolB tol-p 99.6 2.3E-12 5E-17 116.7 25.3 222 5-278 183-416 (417)
219 PF08662 eIF2A: Eukaryotic tra 99.6 8.9E-13 1.9E-17 106.2 19.4 155 59-265 11-185 (194)
220 KOG1587 Cytoplasmic dynein int 99.5 1.8E-12 3.9E-17 118.2 22.0 242 11-259 242-517 (555)
221 PRK00178 tolB translocation pr 99.5 7.6E-12 1.7E-16 113.7 26.2 225 5-281 192-428 (430)
222 PRK04792 tolB translocation pr 99.5 7.1E-12 1.5E-16 114.1 25.1 221 9-281 215-447 (448)
223 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.3E-10 7.1E-15 98.3 34.0 242 19-269 53-341 (352)
224 KOG2111 Uncharacterized conser 99.5 7.9E-12 1.7E-16 102.9 22.4 161 10-214 93-257 (346)
225 KOG4227 WD40 repeat protein [G 99.5 1.8E-12 4E-17 109.3 19.2 246 45-295 48-319 (609)
226 KOG0644 Uncharacterized conser 99.5 3.6E-14 7.9E-19 129.4 9.6 244 3-263 224-473 (1113)
227 KOG1523 Actin-related protein 99.5 1.1E-12 2.3E-17 108.0 16.9 207 51-302 8-238 (361)
228 KOG3881 Uncharacterized conser 99.5 6.9E-12 1.5E-16 105.8 21.5 259 11-282 55-343 (412)
229 KOG0322 G-protein beta subunit 99.5 4.4E-13 9.4E-18 107.6 13.3 205 9-257 54-322 (323)
230 KOG2321 WD40 repeat protein [G 99.5 7.7E-12 1.7E-16 110.2 21.7 239 55-304 53-308 (703)
231 KOG2139 WD40 repeat protein [G 99.5 5.2E-12 1.1E-16 105.6 19.5 223 13-289 100-364 (445)
232 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.3E-10 1.6E-14 96.2 32.9 260 33-297 27-329 (352)
233 TIGR02800 propeller_TolB tol-p 99.5 6.1E-11 1.3E-15 107.4 27.5 205 34-290 171-384 (417)
234 PF08662 eIF2A: Eukaryotic tra 99.5 1.9E-12 4.1E-17 104.3 15.6 114 10-128 58-179 (194)
235 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-13 4.6E-18 119.0 9.9 95 11-108 290-384 (636)
236 PF10282 Lactonase: Lactonase, 99.4 5.6E-09 1.2E-13 92.1 35.6 271 26-298 2-322 (345)
237 PRK00178 tolB translocation pr 99.4 1.6E-10 3.5E-15 105.1 26.2 214 34-299 180-405 (430)
238 KOG1354 Serine/threonine prote 99.4 2.5E-11 5.3E-16 101.0 18.0 245 11-260 25-361 (433)
239 KOG1310 WD40 repeat protein [G 99.4 1.8E-12 4E-17 113.6 11.7 205 92-297 44-302 (758)
240 KOG1272 WD40-repeat-containing 99.4 1.1E-12 2.4E-17 112.8 9.6 192 12-209 210-405 (545)
241 KOG2315 Predicted translation 99.4 4.4E-10 9.4E-15 99.1 25.9 280 13-304 36-396 (566)
242 PRK01029 tolB translocation pr 99.4 3.2E-10 6.9E-15 102.6 26.0 229 7-281 180-425 (428)
243 KOG2139 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 97.8 20.7 225 8-257 193-430 (445)
244 KOG0974 WD-repeat protein WDR6 99.4 1.3E-11 2.9E-16 115.4 16.4 197 13-259 89-289 (967)
245 PRK04792 tolB translocation pr 99.4 7.9E-10 1.7E-14 100.7 26.5 205 34-290 199-412 (448)
246 KOG4190 Uncharacterized conser 99.3 2.6E-12 5.7E-17 112.9 8.2 208 5-294 729-941 (1034)
247 KOG0974 WD-repeat protein WDR6 99.3 1.1E-10 2.4E-15 109.4 19.1 191 100-299 89-287 (967)
248 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.3E-13 90.3 30.8 262 13-278 38-345 (345)
249 KOG4547 WD40 repeat-containing 99.3 4.4E-10 9.5E-15 99.6 20.7 189 20-259 2-221 (541)
250 PRK01029 tolB translocation pr 99.3 2.1E-09 4.6E-14 97.3 23.6 220 34-299 166-402 (428)
251 KOG1409 Uncharacterized conser 99.3 2.8E-10 6.1E-15 94.8 15.8 248 2-260 15-272 (404)
252 PLN02919 haloacid dehalogenase 99.3 2.6E-08 5.6E-13 99.1 32.2 250 16-299 572-887 (1057)
253 KOG1240 Protein kinase contain 99.2 7.2E-10 1.6E-14 105.7 18.9 227 38-304 1034-1278(1431)
254 KOG3881 Uncharacterized conser 99.2 1.3E-09 2.9E-14 92.2 18.3 233 55-298 57-318 (412)
255 KOG4547 WD40 repeat-containing 99.2 9.1E-10 2E-14 97.7 18.1 183 109-299 4-221 (541)
256 KOG4497 Uncharacterized conser 99.2 1.4E-08 3E-13 84.5 23.7 273 13-293 50-425 (447)
257 COG2706 3-carboxymuconate cycl 99.2 2.6E-07 5.6E-12 78.0 31.3 267 9-279 37-345 (346)
258 TIGR03300 assembly_YfgL outer 99.2 1E-07 2.2E-12 85.2 28.6 231 23-271 105-351 (377)
259 KOG1064 RAVE (regulator of V-A 99.2 2.1E-10 4.5E-15 112.8 11.6 200 7-267 2204-2407(2439)
260 PRK04043 tolB translocation pr 99.2 5.3E-08 1.2E-12 87.8 26.1 194 13-259 189-401 (419)
261 KOG1334 WD40 repeat protein [G 99.1 6.3E-10 1.4E-14 96.6 11.6 248 8-261 182-469 (559)
262 KOG1354 Serine/threonine prote 99.1 1.3E-08 2.8E-13 85.1 18.8 239 55-298 27-357 (433)
263 PF00400 WD40: WD domain, G-be 99.1 1.7E-10 3.6E-15 67.4 5.5 38 2-39 2-39 (39)
264 KOG0309 Conserved WD40 repeat- 99.1 8E-10 1.7E-14 100.4 12.1 277 11-297 24-338 (1081)
265 COG5354 Uncharacterized protei 99.1 2.6E-07 5.7E-12 81.1 26.5 275 11-302 71-399 (561)
266 COG2706 3-carboxymuconate cycl 99.1 2E-06 4.4E-11 72.7 29.7 265 32-298 15-321 (346)
267 PRK04043 tolB translocation pr 99.1 2.8E-07 6.1E-12 83.1 26.6 193 55-300 189-400 (419)
268 TIGR03300 assembly_YfgL outer 99.1 2.7E-07 5.8E-12 82.5 26.0 225 23-266 65-305 (377)
269 KOG2314 Translation initiation 99.1 1.5E-07 3.2E-12 83.5 23.2 254 13-290 251-557 (698)
270 PLN02919 haloacid dehalogenase 99.1 2.8E-07 6.1E-12 91.9 28.3 223 14-262 626-892 (1057)
271 PF08450 SGL: SMP-30/Gluconola 99.0 3.2E-06 6.9E-11 71.0 29.7 218 16-246 4-243 (246)
272 KOG0882 Cyclophilin-related pe 99.0 6.8E-09 1.5E-13 89.6 13.2 265 2-296 44-368 (558)
273 KOG1832 HIV-1 Vpr-binding prot 99.0 3.5E-10 7.5E-15 104.7 5.2 127 2-133 1092-1219(1516)
274 KOG1409 Uncharacterized conser 99.0 1.3E-08 2.7E-13 85.1 13.8 208 1-214 104-395 (404)
275 COG5354 Uncharacterized protei 99.0 1.2E-07 2.6E-12 83.2 19.4 243 36-291 15-336 (561)
276 PF00400 WD40: WD domain, G-be 99.0 2E-09 4.4E-14 62.7 5.6 38 89-126 2-39 (39)
277 KOG0280 Uncharacterized conser 98.9 2.2E-07 4.7E-12 76.4 18.6 241 12-260 70-335 (339)
278 KOG3914 WD repeat protein WDR4 98.9 2.9E-08 6.3E-13 84.5 14.0 165 13-222 64-232 (390)
279 KOG2041 WD40 repeat protein [G 98.9 3.9E-07 8.4E-12 83.2 20.8 271 11-289 14-327 (1189)
280 KOG2314 Translation initiation 98.9 8.3E-07 1.8E-11 78.8 20.9 238 54-303 211-530 (698)
281 KOG3914 WD repeat protein WDR4 98.9 4.8E-08 1.1E-12 83.2 12.8 157 102-266 66-231 (390)
282 KOG2315 Predicted translation 98.8 2.8E-06 6.1E-11 75.6 23.3 246 34-297 12-343 (566)
283 COG5170 CDC55 Serine/threonine 98.8 6.8E-08 1.5E-12 80.0 12.0 245 11-259 26-368 (460)
284 COG4946 Uncharacterized protei 98.8 3E-05 6.5E-10 68.1 28.6 112 184-299 360-478 (668)
285 KOG4532 WD40-like repeat conta 98.8 2.7E-06 5.9E-11 69.2 20.9 229 24-258 85-331 (344)
286 PF13360 PQQ_2: PQQ-like domai 98.8 5.9E-06 1.3E-10 68.8 22.9 219 31-264 1-236 (238)
287 KOG0882 Cyclophilin-related pe 98.8 2E-07 4.3E-12 80.8 13.8 255 9-308 7-315 (558)
288 PF04762 IKI3: IKI3 family; I 98.8 2.8E-05 6E-10 76.7 30.4 284 11-301 75-459 (928)
289 PF13360 PQQ_2: PQQ-like domai 98.8 6.4E-06 1.4E-10 68.5 22.3 217 77-299 2-229 (238)
290 KOG4532 WD40-like repeat conta 98.8 1E-06 2.2E-11 71.7 16.4 199 79-289 53-272 (344)
291 COG4946 Uncharacterized protei 98.8 1.4E-05 3.1E-10 70.0 24.4 125 8-136 356-485 (668)
292 PF15492 Nbas_N: Neuroblastoma 98.8 2.6E-05 5.6E-10 64.3 24.5 168 101-269 46-270 (282)
293 KOG1275 PAB-dependent poly(A) 98.7 5.3E-07 1.2E-11 84.3 16.1 183 23-212 147-341 (1118)
294 PF08450 SGL: SMP-30/Gluconola 98.7 9.3E-05 2E-09 62.1 29.1 217 58-288 4-244 (246)
295 PF15492 Nbas_N: Neuroblastoma 98.7 9.6E-06 2.1E-10 66.8 20.7 189 15-222 47-268 (282)
296 KOG1064 RAVE (regulator of V-A 98.7 1.3E-07 2.9E-12 93.8 11.3 186 95-299 2205-2397(2439)
297 KOG0280 Uncharacterized conser 98.7 9.9E-07 2.2E-11 72.6 14.6 116 15-132 125-246 (339)
298 PRK11138 outer membrane biogen 98.7 5.6E-05 1.2E-09 68.0 27.5 255 23-297 120-391 (394)
299 KOG2695 WD40 repeat protein [G 98.7 2.6E-07 5.7E-12 77.5 10.5 166 114-280 228-402 (425)
300 COG5170 CDC55 Serine/threonine 98.6 2.2E-06 4.8E-11 71.2 15.5 232 55-291 28-358 (460)
301 KOG0309 Conserved WD40 repeat- 98.6 2.1E-07 4.5E-12 85.2 10.0 123 5-130 108-234 (1081)
302 PF07433 DUF1513: Protein of u 98.6 1.3E-05 2.8E-10 67.8 20.0 195 17-250 56-278 (305)
303 KOG4190 Uncharacterized conser 98.6 1.2E-07 2.7E-12 84.0 8.2 160 91-289 728-895 (1034)
304 KOG4714 Nucleoporin [Nuclear s 98.6 3.7E-07 8.1E-12 73.8 10.0 163 90-259 81-255 (319)
305 PF04762 IKI3: IKI3 family; I 98.6 0.00017 3.6E-09 71.3 30.3 246 11-260 209-521 (928)
306 KOG1912 WD40 repeat protein [G 98.6 8.6E-05 1.9E-09 69.0 24.4 123 2-126 46-184 (1062)
307 KOG2041 WD40 repeat protein [G 98.5 6.6E-06 1.4E-10 75.5 16.3 230 3-246 63-326 (1189)
308 PRK11138 outer membrane biogen 98.5 7.4E-05 1.6E-09 67.3 23.4 228 23-265 69-319 (394)
309 KOG1912 WD40 repeat protein [G 98.5 3.9E-05 8.4E-10 71.1 19.6 240 14-259 18-305 (1062)
310 KOG2114 Vacuolar assembly/sort 98.4 4.9E-05 1.1E-09 71.2 19.5 198 105-303 30-248 (933)
311 KOG4714 Nucleoporin [Nuclear s 98.4 3.9E-06 8.5E-11 68.1 10.9 161 5-165 83-252 (319)
312 PF07433 DUF1513: Protein of u 98.4 0.0009 1.9E-08 56.8 27.1 249 15-291 8-277 (305)
313 KOG1645 RING-finger-containing 98.3 0.00015 3.2E-09 62.5 17.2 94 35-131 175-269 (463)
314 cd00216 PQQ_DH Dehydrogenases 98.2 0.0028 6.2E-08 58.7 27.2 251 24-285 111-452 (488)
315 PRK02888 nitrous-oxide reducta 98.2 0.0004 8.8E-09 64.3 20.5 69 187-259 324-405 (635)
316 KOG2695 WD40 repeat protein [G 98.2 4.3E-06 9.4E-11 70.4 7.1 124 11-138 252-386 (425)
317 smart00320 WD40 WD40 repeats. 98.2 3.3E-06 7.1E-11 47.7 4.7 38 2-39 3-40 (40)
318 PF11768 DUF3312: Protein of u 98.2 0.00024 5.1E-09 64.3 17.9 73 228-302 259-333 (545)
319 PRK02888 nitrous-oxide reducta 98.2 0.00069 1.5E-08 62.8 20.9 178 106-298 200-404 (635)
320 KOG1645 RING-finger-containing 98.2 0.00013 2.9E-09 62.8 14.9 82 5-89 187-269 (463)
321 PF06433 Me-amine-dh_H: Methyl 98.1 0.0043 9.3E-08 53.5 25.7 245 17-270 41-332 (342)
322 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0056 1.2E-07 54.3 26.2 101 20-125 1-128 (353)
323 KOG1832 HIV-1 Vpr-binding prot 98.1 3.6E-06 7.8E-11 78.9 5.1 191 44-290 1092-1286(1516)
324 KOG2066 Vacuolar assembly/sort 98.1 0.00024 5.1E-09 66.3 16.4 175 64-298 48-233 (846)
325 KOG1920 IkappaB kinase complex 98.1 0.0018 3.8E-08 63.4 22.4 229 54-295 69-319 (1265)
326 PF11768 DUF3312: Protein of u 98.0 7E-05 1.5E-09 67.7 11.4 72 183-259 259-330 (545)
327 PF04053 Coatomer_WDAD: Coatom 98.0 0.00077 1.7E-08 61.1 17.9 172 91-281 25-207 (443)
328 COG0823 TolB Periplasmic compo 98.0 0.00097 2.1E-08 60.2 18.3 196 43-288 182-387 (425)
329 smart00320 WD40 WD40 repeats. 98.0 3E-05 6.5E-10 43.5 5.7 38 89-126 3-40 (40)
330 KOG1920 IkappaB kinase complex 97.9 0.02 4.4E-07 56.4 26.8 198 12-215 69-324 (1265)
331 KOG3617 WD40 and TPR repeat-co 97.9 0.0005 1.1E-08 64.8 14.9 107 16-128 20-131 (1416)
332 COG3391 Uncharacterized conser 97.9 0.016 3.4E-07 52.0 24.7 219 15-239 77-309 (381)
333 PF14583 Pectate_lyase22: Olig 97.9 0.014 3.1E-07 51.3 26.5 271 17-299 41-382 (386)
334 KOG2066 Vacuolar assembly/sort 97.8 0.0034 7.4E-08 58.9 18.4 152 7-167 54-233 (846)
335 PF08596 Lgl_C: Lethal giant l 97.8 0.02 4.3E-07 51.4 22.5 269 13-296 3-333 (395)
336 KOG1275 PAB-dependent poly(A) 97.7 0.0012 2.7E-08 62.6 14.6 172 76-256 155-340 (1118)
337 KOG2114 Vacuolar assembly/sort 97.7 0.0068 1.5E-07 57.5 19.3 193 58-261 28-246 (933)
338 cd00216 PQQ_DH Dehydrogenases 97.7 0.04 8.6E-07 51.2 25.7 228 23-266 61-382 (488)
339 PF04053 Coatomer_WDAD: Coatom 97.7 0.023 5E-07 51.7 21.8 224 9-259 30-263 (443)
340 PF02897 Peptidase_S9_N: Proly 97.6 0.056 1.2E-06 49.0 27.9 244 14-262 126-408 (414)
341 COG0823 TolB Periplasmic compo 97.5 0.038 8.1E-07 50.1 20.9 110 11-124 192-308 (425)
342 PF08553 VID27: VID27 cytoplas 97.5 0.039 8.4E-07 53.4 21.8 129 77-212 503-646 (794)
343 PF04841 Vps16_N: Vps16, N-ter 97.5 0.068 1.5E-06 48.4 27.3 189 79-280 62-269 (410)
344 KOG1008 Uncharacterized conser 97.5 4.9E-05 1.1E-09 69.1 2.0 200 13-213 58-275 (783)
345 KOG3621 WD40 repeat-containing 97.5 0.00046 1E-08 63.6 7.7 112 186-299 36-153 (726)
346 PF06977 SdiA-regulated: SdiA- 97.5 0.05 1.1E-06 45.4 21.8 213 5-255 15-247 (248)
347 PF03178 CPSF_A: CPSF A subuni 97.4 0.056 1.2E-06 47.2 20.2 133 120-258 62-202 (321)
348 COG3391 Uncharacterized conser 97.3 0.11 2.4E-06 46.6 29.7 261 14-280 33-308 (381)
349 KOG3621 WD40 repeat-containing 97.3 0.0022 4.7E-08 59.3 10.1 116 186-302 79-201 (726)
350 PF06977 SdiA-regulated: SdiA- 97.3 0.089 1.9E-06 44.0 21.7 197 93-291 16-242 (248)
351 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.15 3.3E-06 45.2 22.0 226 11-246 42-345 (353)
352 PF05096 Glu_cyclase_2: Glutam 97.2 0.11 2.4E-06 43.4 21.0 199 2-246 34-249 (264)
353 KOG1008 Uncharacterized conser 97.1 0.00019 4.2E-09 65.4 1.7 193 100-298 58-273 (783)
354 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.029 6.2E-07 40.2 12.1 100 14-123 2-109 (111)
355 PF00780 CNH: CNH domain; Int 97.1 0.14 3.1E-06 43.5 26.0 229 20-268 4-265 (275)
356 KOG2079 Vacuolar assembly/sort 97.1 0.0031 6.8E-08 61.1 8.9 111 188-300 92-205 (1206)
357 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.15 3.3E-06 42.2 24.9 132 23-161 23-159 (354)
358 KOG2395 Protein involved in va 97.0 0.047 1E-06 49.4 15.1 129 77-211 355-498 (644)
359 PF05096 Glu_cyclase_2: Glutam 96.9 0.22 4.7E-06 41.7 18.9 181 101-290 47-251 (264)
360 PF12234 Rav1p_C: RAVE protein 96.9 0.097 2.1E-06 49.4 16.7 113 185-299 31-157 (631)
361 PRK13616 lipoprotein LpqB; Pro 96.8 0.45 9.8E-06 45.2 23.5 210 32-281 328-551 (591)
362 PF04841 Vps16_N: Vps16, N-ter 96.8 0.35 7.7E-06 43.8 27.8 192 17-223 34-256 (410)
363 COG3386 Gluconolactonase [Carb 96.8 0.32 7E-06 42.1 25.9 217 63-291 34-277 (307)
364 PF08553 VID27: VID27 cytoplas 96.7 0.069 1.5E-06 51.7 15.1 92 198-291 545-639 (794)
365 PF02897 Peptidase_S9_N: Proly 96.7 0.43 9.3E-06 43.3 24.9 239 57-299 127-403 (414)
366 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.27 5.8E-06 40.8 26.7 87 6-95 27-132 (354)
367 KOG4640 Anaphase-promoting com 96.7 0.013 2.9E-07 53.7 9.6 91 185-279 22-114 (665)
368 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.13 2.7E-06 36.9 13.7 99 101-208 2-109 (111)
369 KOG2444 WD40 repeat protein [G 96.7 0.0077 1.7E-07 48.5 7.0 103 23-129 70-178 (238)
370 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0082 1.8E-07 36.0 5.4 33 11-44 11-43 (47)
371 PF03178 CPSF_A: CPSF A subuni 96.6 0.42 9E-06 41.7 21.6 216 34-255 3-262 (321)
372 KOG2395 Protein involved in va 96.6 0.14 3.1E-06 46.4 15.0 106 186-291 378-492 (644)
373 PHA02713 hypothetical protein; 96.4 0.73 1.6E-05 43.6 19.4 69 192-263 461-538 (557)
374 KOG3617 WD40 and TPR repeat-co 96.3 0.008 1.7E-07 57.0 6.0 104 190-298 22-131 (1416)
375 KOG4640 Anaphase-promoting com 96.3 0.015 3.3E-07 53.4 7.3 76 231-307 23-99 (665)
376 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1 2.2E-05 42.3 29.8 107 23-135 69-196 (527)
377 PF12894 Apc4_WD40: Anaphase-p 96.2 0.015 3.2E-07 34.9 4.7 34 229-263 12-45 (47)
378 KOG2444 WD40 repeat protein [G 96.2 0.011 2.4E-07 47.6 5.3 142 113-259 33-178 (238)
379 COG3386 Gluconolactonase [Carb 96.2 0.76 1.6E-05 39.8 25.9 220 18-249 31-276 (307)
380 KOG1897 Damage-specific DNA bi 96.1 1.6 3.5E-05 42.9 28.0 284 10-300 529-858 (1096)
381 PRK13616 lipoprotein LpqB; Pro 96.1 0.067 1.5E-06 50.6 10.8 103 184-296 350-472 (591)
382 KOG2079 Vacuolar assembly/sort 96.0 0.03 6.5E-07 54.6 8.2 72 184-257 131-202 (1206)
383 PF06433 Me-amine-dh_H: Methyl 96.0 0.93 2E-05 39.4 26.9 268 33-303 17-325 (342)
384 TIGR02604 Piru_Ver_Nterm putat 96.0 0.99 2.2E-05 40.3 17.3 102 186-291 74-204 (367)
385 PF08596 Lgl_C: Lethal giant l 95.8 1.3 2.7E-05 40.0 17.1 223 7-257 82-337 (395)
386 PHA02713 hypothetical protein; 95.8 1.6 3.4E-05 41.4 18.5 173 109-291 303-522 (557)
387 KOG4441 Proteins containing BT 95.8 1.9 4E-05 41.0 20.4 227 21-261 283-549 (571)
388 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 2.1 4.5E-05 40.2 27.4 71 24-95 121-198 (527)
389 TIGR03074 PQQ_membr_DH membran 95.6 2.7 5.8E-05 41.3 24.7 111 23-137 194-353 (764)
390 PF14583 Pectate_lyase22: Olig 95.4 1.7 3.8E-05 38.5 18.9 244 39-291 16-303 (386)
391 COG5167 VID27 Protein involved 94.9 0.79 1.7E-05 41.8 12.4 104 188-291 513-624 (776)
392 TIGR03118 PEPCTERM_chp_1 conse 94.8 2.3 5E-05 36.3 21.3 218 57-280 26-307 (336)
393 PF14870 PSII_BNR: Photosynthe 94.6 0.84 1.8E-05 39.4 11.8 107 184-296 145-258 (302)
394 KOG4441 Proteins containing BT 94.6 2.5 5.5E-05 40.1 15.9 204 78-291 301-532 (571)
395 PF10313 DUF2415: Uncharacteri 94.2 0.18 4E-06 29.3 4.7 30 185-214 2-34 (43)
396 PF10647 Gmad1: Lipoprotein Lp 94.1 3.2 6.9E-05 34.9 15.7 103 187-290 69-185 (253)
397 PF10168 Nup88: Nuclear pore c 94.0 2.9 6.4E-05 40.7 15.2 77 184-261 85-182 (717)
398 PF07569 Hira: TUP1-like enhan 93.8 0.39 8.4E-06 39.5 7.9 72 188-260 15-97 (219)
399 PF13449 Phytase-like: Esteras 93.8 4.3 9.4E-05 35.5 15.1 117 185-302 86-253 (326)
400 PF00780 CNH: CNH domain; Int 93.7 3.8 8.2E-05 34.7 25.9 222 63-299 5-256 (275)
401 COG3204 Uncharacterized protei 93.7 3.9 8.5E-05 34.8 14.6 46 94-139 81-126 (316)
402 PF10313 DUF2415: Uncharacteri 93.6 0.38 8.2E-06 28.0 5.2 31 12-42 1-34 (43)
403 TIGR02276 beta_rpt_yvtn 40-res 93.4 0.6 1.3E-05 26.7 6.3 40 238-278 1-41 (42)
404 KOG2377 Uncharacterized conser 93.3 2.6 5.7E-05 38.0 12.4 99 183-284 66-167 (657)
405 PRK10115 protease 2; Provision 93.3 8.7 0.00019 37.5 32.9 112 13-127 128-254 (686)
406 PF07995 GSDH: Glucose / Sorbo 93.3 1.3 2.9E-05 38.9 10.9 103 186-290 4-133 (331)
407 COG3490 Uncharacterized protei 93.1 0.31 6.7E-06 41.0 6.2 57 235-291 120-182 (366)
408 COG3204 Uncharacterized protei 93.1 4.2 9.1E-05 34.6 12.8 117 180-298 82-210 (316)
409 COG3490 Uncharacterized protei 93.1 4.9 0.00011 34.1 20.4 227 16-265 72-317 (366)
410 PF08728 CRT10: CRT10; InterP 92.9 8.5 0.00018 37.2 16.0 104 194-299 113-245 (717)
411 TIGR03606 non_repeat_PQQ dehyd 92.9 7.5 0.00016 35.7 15.3 106 183-290 29-165 (454)
412 PF07569 Hira: TUP1-like enhan 92.8 0.49 1.1E-05 38.8 7.0 66 235-300 17-97 (219)
413 COG3823 Glutamine cyclotransfe 92.7 4.6 9.9E-05 32.6 15.0 167 77-246 67-247 (262)
414 PHA02790 Kelch-like protein; P 92.5 8.9 0.00019 35.6 17.8 109 22-134 271-390 (480)
415 TIGR02604 Piru_Ver_Nterm putat 92.3 4.1 9E-05 36.3 12.9 102 184-289 14-142 (367)
416 PF15390 DUF4613: Domain of un 92.2 3.9 8.5E-05 38.1 12.3 115 184-298 57-184 (671)
417 COG5290 IkappaB kinase complex 92.1 11 0.00023 36.8 15.3 193 96-291 110-359 (1243)
418 PF07995 GSDH: Glucose / Sorbo 91.8 8.4 0.00018 33.8 23.1 57 239-295 270-330 (331)
419 PHA03098 kelch-like protein; P 91.8 12 0.00025 35.3 19.0 23 239-261 487-514 (534)
420 PF10168 Nup88: Nuclear pore c 91.2 16 0.00034 35.8 18.7 33 97-129 145-180 (717)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 91.1 3 6.6E-05 37.7 10.5 79 185-268 309-408 (415)
422 PF07250 Glyoxal_oxid_N: Glyox 90.9 8.4 0.00018 32.1 12.2 111 190-300 73-199 (243)
423 PF11715 Nup160: Nucleoporin N 90.9 0.47 1E-05 44.8 5.6 38 12-49 215-256 (547)
424 PF11715 Nup160: Nucleoporin N 90.5 1.6 3.4E-05 41.3 8.8 74 193-266 156-256 (547)
425 PF14870 PSII_BNR: Photosynthe 90.0 12 0.00026 32.4 22.5 105 185-292 188-297 (302)
426 KOG4499 Ca2+-binding protein R 90.0 7.2 0.00016 32.2 10.6 100 16-118 162-275 (310)
427 COG3823 Glutamine cyclotransfe 89.8 9.4 0.0002 30.9 14.1 172 109-290 55-249 (262)
428 KOG2377 Uncharacterized conser 89.2 2.6 5.6E-05 38.1 8.2 100 10-114 65-169 (657)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 7.2 0.00016 35.3 11.0 47 6-52 302-348 (415)
430 KOG1897 Damage-specific DNA bi 88.6 28 0.00061 34.8 23.1 100 186-290 777-888 (1096)
431 KOG1916 Nuclear protein, conta 87.6 1.3 2.8E-05 43.2 5.7 77 191-271 191-283 (1283)
432 PF08801 Nucleoporin_N: Nup133 87.0 20 0.00043 32.6 13.1 30 230-259 191-220 (422)
433 PF14727 PHTB1_N: PTHB1 N-term 86.6 25 0.00054 32.0 14.8 50 241-291 146-195 (418)
434 PF10647 Gmad1: Lipoprotein Lp 86.6 18 0.00039 30.4 21.6 149 100-250 25-187 (253)
435 PRK13684 Ycf48-like protein; P 85.8 24 0.00052 31.0 15.9 147 11-165 172-329 (334)
436 TIGR03074 PQQ_membr_DH membran 84.7 44 0.00095 33.1 19.5 72 23-95 260-353 (764)
437 PF10395 Utp8: Utp8 family; I 84.4 40 0.00088 32.5 17.6 156 11-167 129-305 (670)
438 KOG2280 Vacuolar assembly/sort 84.3 42 0.00092 32.6 18.3 182 33-223 64-256 (829)
439 PF12234 Rav1p_C: RAVE protein 83.9 29 0.00064 33.3 12.7 110 13-127 31-155 (631)
440 TIGR02276 beta_rpt_yvtn 40-res 83.6 5.7 0.00012 22.4 5.4 32 21-52 1-33 (42)
441 KOG3630 Nuclear pore complex, 82.3 4.3 9.4E-05 40.8 6.7 113 188-300 105-230 (1405)
442 KOG1983 Tomosyn and related SN 80.5 52 0.0011 33.7 13.7 30 12-41 36-65 (993)
443 PF05694 SBP56: 56kDa selenium 79.8 38 0.00082 30.9 11.1 113 16-130 185-344 (461)
444 PHA02790 Kelch-like protein; P 79.6 53 0.0011 30.5 13.6 106 22-133 318-428 (480)
445 PHA03098 kelch-like protein; P 79.6 55 0.0012 30.8 17.1 51 238-290 436-496 (534)
446 smart00564 PQQ beta-propeller 78.6 5.9 0.00013 21.0 4.0 24 242-265 8-31 (33)
447 COG5167 VID27 Protein involved 78.0 41 0.00088 31.3 10.8 138 115-258 485-632 (776)
448 PF08801 Nucleoporin_N: Nup133 77.8 55 0.0012 29.7 13.6 30 185-214 191-220 (422)
449 TIGR03606 non_repeat_PQQ dehyd 77.7 59 0.0013 30.0 15.2 35 96-130 27-61 (454)
450 PF01436 NHL: NHL repeat; Int 77.7 6.7 0.00015 20.3 3.8 24 187-210 5-28 (28)
451 PF15390 DUF4613: Domain of un 77.6 66 0.0014 30.5 13.2 69 189-259 118-187 (671)
452 KOG2109 WD40 repeat protein [G 77.4 1.2 2.6E-05 41.8 1.3 74 2-75 306-390 (788)
453 PF07676 PD40: WD40-like Beta 77.4 10 0.00022 21.1 5.2 33 6-38 3-38 (39)
454 KOG1900 Nuclear pore complex, 76.8 34 0.00074 35.3 10.9 81 178-259 173-273 (1311)
455 KOG1916 Nuclear protein, conta 76.5 3.6 7.9E-05 40.3 4.2 105 19-126 243-372 (1283)
456 KOG4460 Nuclear pore complex, 76.4 20 0.00044 33.2 8.5 80 185-264 105-204 (741)
457 KOG4499 Ca2+-binding protein R 74.2 50 0.0011 27.5 17.8 103 187-289 161-274 (310)
458 PF07250 Glyoxal_oxid_N: Glyox 73.8 18 0.00039 30.2 7.2 81 208-291 49-138 (243)
459 KOG2280 Vacuolar assembly/sort 73.3 96 0.0021 30.3 14.8 39 229-267 217-255 (829)
460 KOG3616 Selective LIM binding 73.1 10 0.00022 36.6 6.1 31 100-130 16-46 (1636)
461 PF10214 Rrn6: RNA polymerase 73.0 1E+02 0.0023 30.6 13.9 126 184-309 80-243 (765)
462 TIGR03118 PEPCTERM_chp_1 conse 72.8 63 0.0014 28.0 22.7 217 15-238 26-307 (336)
463 PF13449 Phytase-like: Esteras 72.6 63 0.0014 28.3 10.8 57 16-73 89-166 (326)
464 PF14761 HPS3_N: Hermansky-Pud 72.0 16 0.00034 29.8 6.2 49 241-290 29-79 (215)
465 KOG4460 Nuclear pore complex, 70.8 43 0.00093 31.2 9.2 27 12-38 104-130 (741)
466 PF03088 Str_synth: Strictosid 68.8 35 0.00076 23.5 9.0 48 77-125 36-85 (89)
467 PF01011 PQQ: PQQ enzyme repea 68.0 19 0.00041 20.0 4.5 26 242-267 2-27 (38)
468 PF05935 Arylsulfotrans: Aryls 67.5 1.1E+02 0.0023 28.6 11.6 106 189-298 153-299 (477)
469 PF14761 HPS3_N: Hermansky-Pud 67.2 68 0.0015 26.2 15.0 105 24-130 29-165 (215)
470 PF12657 TFIIIC_delta: Transcr 66.0 44 0.00096 26.1 7.7 30 99-128 86-121 (173)
471 PF13570 PQQ_3: PQQ-like domai 65.8 12 0.00025 21.1 3.3 21 239-259 20-40 (40)
472 KOG1898 Splicing factor 3b, su 65.8 62 0.0014 32.8 9.8 92 187-278 541-640 (1205)
473 KOG1900 Nuclear pore complex, 65.5 68 0.0015 33.3 10.2 33 182-214 241-273 (1311)
474 PF03088 Str_synth: Strictosid 65.2 42 0.00092 23.1 7.3 43 29-72 33-75 (89)
475 PF08728 CRT10: CRT10; InterP 64.9 1.5E+02 0.0032 29.2 16.4 73 185-257 165-245 (717)
476 PF05694 SBP56: 56kDa selenium 64.7 1.1E+02 0.0025 27.9 24.4 193 22-214 86-343 (461)
477 PF01731 Arylesterase: Arylest 63.8 41 0.00088 23.0 6.1 28 232-259 57-85 (86)
478 KOG3630 Nuclear pore complex, 63.4 24 0.00052 35.9 6.6 114 13-128 102-228 (1405)
479 COG4590 ABC-type uncharacteriz 62.3 92 0.002 28.6 9.5 168 91-266 213-394 (733)
480 PRK10115 protease 2; Provision 62.0 1.7E+02 0.0036 28.8 26.0 74 55-130 128-209 (686)
481 TIGR02171 Fb_sc_TIGR02171 Fibr 59.0 89 0.0019 31.4 9.5 77 204-283 328-411 (912)
482 PF14781 BBS2_N: Ciliary BBSom 57.8 78 0.0017 23.7 12.7 105 16-127 3-124 (136)
483 KOG2247 WD40 repeat-containing 56.8 2.8 6E-05 38.2 -0.7 108 13-124 76-184 (615)
484 PF12657 TFIIIC_delta: Transcr 56.4 95 0.002 24.2 8.6 30 185-214 87-122 (173)
485 PLN02193 nitrile-specifier pro 53.4 1.9E+02 0.0041 26.8 16.4 66 194-261 328-413 (470)
486 PF14779 BBS1: Ciliary BBSome 53.2 57 0.0012 27.5 6.5 59 196-255 196-255 (257)
487 TIGR03548 mutarot_permut cycli 53.0 1.5E+02 0.0033 25.6 15.7 26 191-216 168-197 (323)
488 COG4590 ABC-type uncharacteriz 52.1 1E+02 0.0023 28.3 8.1 161 4-168 213-387 (733)
489 PF10395 Utp8: Utp8 family; I 51.9 2.4E+02 0.0051 27.5 26.8 160 97-260 128-307 (670)
490 COG5290 IkappaB kinase complex 51.3 2.6E+02 0.0057 27.9 12.4 29 11-39 112-140 (1243)
491 PLN00033 photosystem II stabil 50.6 2E+02 0.0042 26.2 18.3 155 98-255 238-396 (398)
492 PF12341 DUF3639: Protein of u 49.0 38 0.00083 17.5 3.4 25 13-39 3-27 (27)
493 COG4257 Vgb Streptogramin lyas 45.2 2E+02 0.0043 24.7 17.3 184 58-260 66-264 (353)
494 PF14727 PHTB1_N: PTHB1 N-term 44.7 2.5E+02 0.0054 25.7 23.4 60 197-261 302-363 (418)
495 KOG3616 Selective LIM binding 44.4 56 0.0012 32.0 5.6 32 13-44 16-47 (1636)
496 TIGR02608 delta_60_rpt delta-6 42.0 43 0.00093 20.7 3.1 19 13-31 2-20 (55)
497 PF12768 Rax2: Cortical protei 41.9 71 0.0015 27.4 5.5 54 79-132 17-76 (281)
498 PF06739 SBBP: Beta-propeller 41.5 56 0.0012 18.3 3.3 21 13-33 14-34 (38)
499 PF11725 AvrE: Pathogenicity f 41.2 2.4E+02 0.0051 30.7 9.7 150 95-259 359-517 (1774)
500 PF14339 DUF4394: Domain of un 40.4 2.2E+02 0.0047 23.7 10.8 71 229-299 27-104 (236)
No 1
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-50 Score=326.05 Aligned_cols=303 Identities=48% Similarity=0.828 Sum_probs=281.9
Q ss_pred CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
|++.+.|+..++.|+++.|+++|.+|++++.|-+++|||..++++.+++..+++++..++|..+.+.++.++. .+|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCCCce
Confidence 5677889988999999999999999999999999999999999999999999999999999999988888774 679999
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC-
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG- 159 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (309)
|+.++.++++++.|.||+..|+.++.+|-+..|+|+|.|++||+||++..+|...+.....+.++|+|.|.++|++.++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999998889999999999999999875
Q ss_pred EEEEEECCCCCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 160 YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
.|++||+|.+..+++..+.+. +.....+.+.|||||++++.++..+.+++.|..+|.++.++..++...+-....+|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 999999999999999988877 4556789999999999999999999999999999999999987766555557889999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEeec-CCCCCcEEEECCCeeEEEEccceEEEeeecCCCccc
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 304 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~ 304 (309)
|++++++|+.||+|.+|+++++.++..+.+ +.+++.++.|+|.-.+++++++.+.+|.|+...+..
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALPA 309 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccCC
Confidence 999999999999999999999999999988 788999999999999999999999999998766643
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-50 Score=335.35 Aligned_cols=285 Identities=24% Similarity=0.403 Sum_probs=244.0
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
..+.||.++|.++.|+|+|++|||||.|.|+|+||+++..++++..+|..+|.+++++||++.+++++. |++|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeEEEec
Confidence 357899999999999999999999999999999999999999999999999999999999999998875 88999999
Q ss_pred ccCCce-EEEeeecccCEEEEEecC-----CCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE
Q 021648 85 LHDNKY-LRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA 156 (309)
Q Consensus 85 ~~~~~~-~~~~~~h~~~v~~v~~~~-----~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 156 (309)
.++|++ .+.+.||...|++++|.| ..++|+|+|.||+++|||+..++++..+..+..+ +......+.+++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 998775 578999999999999975 5678999999999999999888887766544332 33344556677777
Q ss_pred ECCEEEEEECCCCC---------------------------------c-C-----------------------------C
Q 021648 157 FGGYIRMFDARKYE---------------------------------K-G-----------------------------P 173 (309)
Q Consensus 157 ~~~~i~~~d~~~~~---------------------------------~-~-----------------------------~ 173 (309)
.|++|++|+..... . + .
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 78888888743200 0 0 0
Q ss_pred c------------eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648 174 F------------DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 174 ~------------~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
+ .+....+|..-|+.+.||||++++|+++.|+.|++||.++|+.+.+|. .|...|..++||.|.+
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWSADSR 422 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEeccCcc
Confidence 0 111234566778999999999999999999999999999999999887 4667899999999999
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEe
Q 021648 242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 295 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~ 295 (309)
.|++||.|.++++||+++.+....+++|..+|.++.|+|||+.+++|+.| +++|
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 99999999999999999999889999999999999999999999999999 5555
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-49 Score=329.53 Aligned_cols=280 Identities=24% Similarity=0.336 Sum_probs=248.6
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC--CCEEEEEcCCCCCceeEEEEc
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~i~~~d~ 85 (309)
.|-+.+|..+.|++|++.|||||++|.++||+..+...+++|.+|...+..+.|+|. +..+++++. |+++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~---Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA---DGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc---CCceeeecc
Confidence 356789999999999999999999999999999999999999999999999999997 346666654 999999999
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCCcEEEEE-ECCEEE
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVA-FGGYIR 162 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~i~ 162 (309)
.+...+..+.||..+|..|+|+|+|++|+|+|.|.+.++||++++........+ +...+++.++|.+++++ .|..-+
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 999999999999999999999999999999999999999999988655443322 34467888888777655 688999
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGM 241 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~ 241 (309)
+||+|+.. .++-+.+|..+|..|.|||+|..+++|+.|++++|||++....+.+. +.|.+-|..|.|+| .|.
T Consensus 329 vWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 329 VWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred eeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCe
Confidence 99999865 36677789999999999999999999999999999999987776543 46778899999999 689
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648 242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 297 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~ 297 (309)
+|+|+|.|++++||...++.+++++.+|.+.|.++.++||++.+++++.| +++|.|
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99999999999999999999999999999999999999999999999998 666753
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.2e-44 Score=285.67 Aligned_cols=285 Identities=18% Similarity=0.281 Sum_probs=248.6
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
..-++|+||.+.|.++.|++|+++|+|+|.||.+.|||.-+....+.+.-...+|+.++|+|.++.++++ |.|+...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG---GLdN~Cs 122 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG---GLDNKCS 122 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec---CcCceeE
Confidence 4557899999999999999999999999999999999999999999999989999999999999988764 6799999
Q ss_pred EEEccCC------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECC-CC-c
Q 021648 82 LLSLHDN------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD-QG-L 151 (309)
Q Consensus 82 ~~d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~-~~-~ 151 (309)
+|++.+. +..+.+.+|.+.+.++.|.+| ..|+|+|.|.++.+||+++++....+.-+. .......| ++ .
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9999854 234668999999999999875 589999999999999999998877665433 22334444 33 5
Q ss_pred EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648 152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 231 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 231 (309)
+++++-|+..++||+|.. ....+..+|.++|++|+|.|+|.-+++|+.|++.++||++....+..|... .....+
T Consensus 202 FvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGI 276 (343)
T ss_pred EEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCc
Confidence 666677999999999863 346678899999999999999999999999999999999998888887633 234568
Q ss_pred ceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEe
Q 021648 232 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 295 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~ 295 (309)
.+++||..||+|.+|..|.++.|||.-.++.+..+.+|...|++|..+|||..+++|+-| +++|
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 899999999999999999999999999999999999999999999999999999999998 6666
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-43 Score=276.32 Aligned_cols=278 Identities=20% Similarity=0.280 Sum_probs=226.9
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc--eEEEeeecccCE
Q 021648 24 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRV 101 (309)
Q Consensus 24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~--~~~~~~~h~~~v 101 (309)
-+|+|+|+|.|||+|.+.+|.|.+++......|..+++.|++..++++. ...||+||+.+++ ++.++.+|.+.|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCce
Confidence 5899999999999999999999999999999999999999999888764 5789999998865 689999999999
Q ss_pred EEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEe
Q 021648 102 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV 179 (309)
Q Consensus 102 ~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 179 (309)
++|.|..+|+++.|||.||++||||+|...+...+.... .+.+... ++..++.+..+|.|++||++... +.....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~---c~~~li 163 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS---CTHELI 163 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc---cccccC
Confidence 999999999999999999999999999987777665442 2334444 45678877788999999997632 111111
Q ss_pred CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe---EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648 180 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 180 ~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd 256 (309)
-.....+.+++..|||++++++...|+.++|++.... .+........|.+.+..+.||||+++||++|.|.+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 1223568899999999999999999999999986533 2222222234667788999999999999999999999999
Q ss_pred CCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec-CCCccccccC
Q 021648 257 VRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD-LSKLGAYVGR 308 (309)
Q Consensus 257 ~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~-~~~~~~~~~~ 308 (309)
+++- +....+.+|..-+...+||.|+++|++|++| .++|.++ .+.+.++-||
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 9886 3445578999999999999999999999998 7777554 4446667665
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-42 Score=279.01 Aligned_cols=290 Identities=20% Similarity=0.326 Sum_probs=245.0
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
-++|.+.+|+++|..+.|+|+|..|||||.|+.|-+|++.. -+...++.+|...|+.+.+.+++..+++++. |.++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~v 114 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKTV 114 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---CceE
Confidence 36788999999999999999999999999999999999752 3335678899999999999999999998865 9999
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEE-CCCCcEEEEEE
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAY-DDQGLVFAVAF 157 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 157 (309)
+.||+++|+.++.+++|.+-|++++-+.-| ..+.|++.||++++||+|+..++.++..+. .....+ +....+++++.
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccc
Confidence 999999999999999999999999844333 367899999999999999887777663221 123334 34568999999
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC----eEeEEeeecCCCC--Ccc
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVSR--NST 231 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~~--~~~ 231 (309)
|+.|++||+|+.+ ..+.+.|+...|..+..||+|.++.+.++|.++++||.+.- .++..+..+ .|. ...
T Consensus 195 dn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfeknl 269 (338)
T KOG0265|consen 195 DNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKNL 269 (338)
T ss_pred cCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc-hhhhhhhc
Confidence 9999999998643 36778899999999999999999999999999999997642 224444322 222 234
Q ss_pred ceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 232 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
..++|+|+++++.+|+.|..+++||......+..+++|.+.|++++|+|...++.++++|.++++-|+
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 67899999999999999999999999988899999999999999999999999999999999998765
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-40 Score=263.04 Aligned_cols=283 Identities=19% Similarity=0.340 Sum_probs=230.2
Q ss_pred ccceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcC-----CCceeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648 2 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 75 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g 75 (309)
++.-++++|++.|+.++..+. ...+++++.|.++.+|++. .|...+.+.+|...|..+++++++++.++++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s--- 82 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS--- 82 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc---
Confidence 455688999999999999886 5789999999999999875 5777899999999999999999999998775
Q ss_pred CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC----ceeEEECCC--
Q 021648 76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQ-- 149 (309)
Q Consensus 76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~~~~~~~~~-- 149 (309)
||+++|+||+++++..+.|.||...|.+++|++|++.++|||.|++|++|+.... |.-++.... .....+.|.
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence 6999999999999999999999999999999999999999999999999997554 333332221 234566655
Q ss_pred -CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648 150 -GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228 (309)
Q Consensus 150 -~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 228 (309)
..++.++.|+++++||+++.+.. ..+-+|...++.+++||||...++|+.||.+.+||+..++.+.++. +.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~----~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a~ 233 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLR----TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----AF 233 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchh----hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----CC
Confidence 34666678999999999875432 2344677789999999999999999999999999999999887765 45
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec----C-----CCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS----F-----DTEPPVIKWTPGSLMFVTGSSE--LSFWIP 297 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~----~-----~~~v~~l~~~p~~~~l~s~~~d--~~~~~~ 297 (309)
..|.+++|+|+- +.+.+..+..|+|||+.++..+.++.. . .....+++|++||+.|.+|-.| +++|..
T Consensus 234 ~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 234 DIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred CeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 678899999985 445555666799999999888776532 1 1123558999999988888877 666654
No 8
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-41 Score=263.50 Aligned_cols=285 Identities=22% Similarity=0.342 Sum_probs=235.1
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
.+.+..|+++|.++.|+-||+|.+|++.|++||+|+...|.+++++.+|...|..++.+.+...++++ |.|..+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---GGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC---CCCceEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999998888765 349999999
Q ss_pred EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee--eeecCceeEEE-CCCCcEEEEEECCE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--LRVQGRPAAAY-DDQGLVFAVAFGGY 160 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (309)
|+++|+.++.+.||.+.|+.+.|+.+...++|||.|.++++||.++...... +.......... -....+++++.||+
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence 9999999999999999999999999999999999999999999887654332 22111111122 23456888888999
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 240 (309)
+|.||+|..+.. ...-..++++++||+||+..++++.|+++++.|-.+|+++..+..+-. ...-..++++...
T Consensus 167 vRtydiR~G~l~------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykldc~l~qsd 239 (307)
T KOG0316|consen 167 VRTYDIRKGTLS------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLDCCLNQSD 239 (307)
T ss_pred EEEEEeecceee------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-ceeeeeeeecccc
Confidence 999999875421 111124799999999999999999999999999999999988875322 2334578899889
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCCC-CcEEEECCCeeEEEE-ccceEEEeeec
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFVT-GSSELSFWIPD 298 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~~l~s-~~~d~~~~~~~ 298 (309)
.++++||+||.+++||+.....+..+..++.. +..|+++|...-|.+ ++....+|.-+
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQE 299 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceeceeeh
Confidence 99999999999999999999999999888887 789999998754444 44446666543
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-39 Score=277.32 Aligned_cols=302 Identities=18% Similarity=0.343 Sum_probs=244.2
Q ss_pred CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee---ccccceeEEEEecCCCEEEEEcCCCCC
Q 021648 1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
|++-++++.|+.=|+++.|+|||+++||+|.||++.+||-.+|+.+..++ +|+..+..++|+||++++++++. |
T Consensus 180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa---D 256 (603)
T KOG0318|consen 180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA---D 256 (603)
T ss_pred eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC---C
Confidence 46678889999999999999999999999999999999999999999998 88899999999999999999875 8
Q ss_pred ceeEEEEccCCceE-------------------------------------------EEeeecccCEEEEEecCCCCeEE
Q 021648 78 ESLRLLSLHDNKYL-------------------------------------------RYFKGHHDRVVSLSLCSSKDCFI 114 (309)
Q Consensus 78 ~~i~~~d~~~~~~~-------------------------------------------~~~~~h~~~v~~v~~~~~~~~l~ 114 (309)
.++|+||+.+++.+ +.+.||...|+++..++++++|.
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 99999999876542 33679999999999999999999
Q ss_pred EecCCCcEEEeeCCCceeeeee-eec--CceeEEECCCCcEEEEEECCEEEEEECCCC--C--------cCCceE-----
Q 021648 115 SGSLDRTVLLWDQRAEKCQGLL-RVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKY--E--------KGPFDI----- 176 (309)
Q Consensus 115 s~s~Dg~v~~Wd~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~--------~~~~~~----- 176 (309)
||+.||.|.-||..++...... +.+ ..........+.+++++.|+++++.++... . .++..+
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 9999999999998877654432 111 122344556688999999999999976321 0 011100
Q ss_pred ------------EEeCC--------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 177 ------------FSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 177 ------------~~~~~--------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
..+.. ......+++++|++..++.|+.|++|++|.+..+++..+... ..|..++..++|
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vay 495 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEHRAAITDVAY 495 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecccCCceEEEE
Confidence 00000 112456789999999999999999999999877665443222 236788999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceEEE-eecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCccccc
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGAYV 306 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~~~ 306 (309)
|||+.|||+|...+.+.+||+.+.+.... +.-|++.|.+++|+|+.+++|+|+-|..+.+|+..++.+.+
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 99999999999999999999998776333 44599999999999999999999999888888888887654
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=283.22 Aligned_cols=245 Identities=20% Similarity=0.317 Sum_probs=221.3
Q ss_pred ccceEecCCCcceEEEEeCCC--CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 2 EVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~--~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+++.+|.||++.|.++.|+|. +.-||||+.||++++|++++-+.++.+.+|...|..++|+|+|+++.+++. |.+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---D~t 284 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF---DST 284 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc---ccc
Confidence 567899999999999999997 568999999999999999998999999999999999999999999998874 999
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA- 156 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~- 156 (309)
.|+||+++++.+.-..||...|.+++|.+||..++|||.|..-|+||+++++++..+..+. ...+.++|.|.-++++
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence 9999999999988899999999999999999999999999999999999999998876543 3356788999866655
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
.|+++++||+|.... .+.+-.|.+-|+.|+|+| .|.+|++++.|++++||...+..++.++. +|.+.|.+++
T Consensus 365 ~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s~D 437 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVISLD 437 (459)
T ss_pred CCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEEEE
Confidence 689999999986432 567777888899999999 78999999999999999999988888765 4778899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEE
Q 021648 236 FSPEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg~i~vwd 256 (309)
++||+++++|+|.|.+|++|.
T Consensus 438 is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eccCCceEEEeccCceeeecc
Confidence 999999999999999999995
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-38 Score=285.21 Aligned_cols=290 Identities=24% Similarity=0.401 Sum_probs=242.9
Q ss_pred eEecCC-CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 5 MSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h-~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
..+.+| ...|.++.|+++|+++++++.|+++++|+..+++ .++++.+|...|..++|++++.++++++. |.++|
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~tir 228 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKTLR 228 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---CceEE
Confidence 344454 7789999999999999999999999999998887 78888999999999999999998888875 89999
Q ss_pred EEEc-cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-E
Q 021648 82 LLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-F 157 (309)
Q Consensus 82 ~~d~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~ 157 (309)
+||+ ..+..++++++|...|++++|+|+++.+++|+.|++|++||++++++...+..+. ...+.+.+++.+++++ .
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence 9999 5568999999999999999999999999999999999999999999888876543 3456777777666655 5
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCC--CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
|+.|++||+.+.... ....+.+... .+.+++|+|+|.+++++..|+++++||+.++.....+..+.....++....
T Consensus 309 d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 899999999875522 1122222222 589999999999999999999999999999988887765432212344455
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcEEEECCCeeEEEEcc--ceEEEeeecC
Q 021648 236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTGS--SELSFWIPDL 299 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~s~~--~d~~~~~~~~ 299 (309)
+++.|+++++|+.|+.|++||+.++..+..+.+| ...+..++++|..+++++++ .|..++.|..
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 6889999999999999999999999889999999 88889999999999999998 5766666654
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.6e-39 Score=286.74 Aligned_cols=249 Identities=22% Similarity=0.351 Sum_probs=218.3
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-------------------------------eeeeeeccc
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-------------------------------CLKTINSKK 53 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-------------------------------~~~~~~~~~ 53 (309)
.+|..-...++|..|++|+++||-|-.|-.|++|.+...+ ..+++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 4555555679999999999999999999999999876211 122477899
Q ss_pred cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648 54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133 (309)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~ 133 (309)
.+|..+.|+|+.++++++|. |.++|+|.+.+..++..++||..+|+.|.|+|-|-+|||+|.|++-++|.....++.
T Consensus 452 GPVyg~sFsPd~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CceeeeeecccccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 99999999999999999875 899999999999999999999999999999999999999999999999986443221
Q ss_pred eeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648 134 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 213 (309)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~ 213 (309)
. ...+|.+++.|+.|.|+..++++|+.|.+||+||..
T Consensus 529 R-------------------------------------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~ 565 (707)
T KOG0263|consen 529 R-------------------------------------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS 565 (707)
T ss_pred h-------------------------------------------hhcccccccceEEECCcccccccCCCCceEEEEEcC
Confidence 1 123567889999999999999999999999999999
Q ss_pred CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEE
Q 021648 214 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 293 (309)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~ 293 (309)
+|..+..|. +|..+|.+++|||+|++|++|++|+.|.+||+.+++.+..+.+|++.|.++.|+.+|..||+|+.|..
T Consensus 566 ~G~~VRiF~---GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 566 TGNSVRIFT---GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CCcEEEEec---CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 999998886 47789999999999999999999999999999999999999999999999999999999999999966
Q ss_pred EeeecCCCc
Q 021648 294 FWIPDLSKL 302 (309)
Q Consensus 294 ~~~~~~~~~ 302 (309)
+-.||+-++
T Consensus 643 V~lWD~~~~ 651 (707)
T KOG0263|consen 643 VRLWDLTKV 651 (707)
T ss_pred EEEEEchhh
Confidence 666666444
No 13
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-39 Score=265.25 Aligned_cols=257 Identities=25% Similarity=0.396 Sum_probs=203.6
Q ss_pred ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648 44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 123 (309)
Q Consensus 44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~ 123 (309)
.|-..+.+|..+|.++.|+|++..+++++. |.++|+||+.+..+..+.++|...|.+|+|+||++.|+||+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 455678999999999999999999998863 99999999999999999999999999999999999999999999999
Q ss_pred EeeCCCceeee-eeeecCc--eeEEEC------CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC
Q 021648 124 LWDQRAEKCQG-LLRVQGR--PAAAYD------DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 194 (309)
Q Consensus 124 ~Wd~~~~~~~~-~~~~~~~--~~~~~~------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 194 (309)
+||+++++++. .++.+.+ ...++. +.+.+.+++.||.++|||+.. ...++.+.+|...|+|++.-.+
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~----~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL----GTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC----ceEEEEeccCccceEEEEEcCC
Confidence 99999887653 3332222 223332 233455556799999999753 2346778888888888887654
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEeEEee----------------------------------------------------
Q 021648 195 GRLMLLTTMEGHIHVLDSFRGTLLSTYN---------------------------------------------------- 222 (309)
Q Consensus 195 g~~l~~~~~dg~v~i~d~~~~~~~~~~~---------------------------------------------------- 222 (309)
| ++.+++.|++|++|+...|.+..++.
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4 56677788888888766543322210
Q ss_pred ------------------------ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648 223 ------------------------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 278 (309)
Q Consensus 223 ------------------------~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 278 (309)
....|..-|..+.||||+++||+||-|..|++||.++|+.+.+|.+|-+.|..++|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 00123445677999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccce--EEEeeecCCCcc-ccccC
Q 021648 279 TPGSLMFVTGSSE--LSFWIPDLSKLG-AYVGR 308 (309)
Q Consensus 279 ~p~~~~l~s~~~d--~~~~~~~~~~~~-~~~~~ 308 (309)
+.|.++|++++.| +++|...-.+|. ++.||
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 9999999999998 667766555553 45555
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-36 Score=257.28 Aligned_cols=284 Identities=26% Similarity=0.450 Sum_probs=240.7
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
.++|++|+++|++++|+|++++|++++.|+.+++||+.+++....+..|...+..+.+.++++.+++++. |+.+++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEE
Confidence 4678899999999999999999999999999999999988888888888888889999999888887764 7899999
Q ss_pred EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-CCE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGY 160 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 160 (309)
|+.+++.+..+..|...+.++.|+++++.+++++.|+.+++||+++.+....+.... .....+.+.+.+++++. ++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 999988888999999999999999998899999889999999998777665554222 23456667677777776 999
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 240 (309)
+++||++..+. ......+...+.+++++|+++.+++++.++.|++||..++..+..+.. +...+..+.|+|++
T Consensus 159 i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~ 231 (289)
T cd00200 159 IKLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDG 231 (289)
T ss_pred EEEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh---cCCceEEEEEcCCC
Confidence 99999875331 222334555789999999999999999999999999988877766542 34578889999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.+++++.|..+.+|
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 999999999999999999988888888999999999999999999999998555544
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-38 Score=258.46 Aligned_cols=284 Identities=17% Similarity=0.272 Sum_probs=239.9
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+.+.+.+|..+|+.+-|.|+-.++++++.|++|++||..+|++.+.+++|...+..+.|...|.+++.+|. |-.+++
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---Dl~~~L 176 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---DLSAKL 176 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---ccchhh
Confidence 44567789999999999999999999999999999999999999999999999999999999999998876 667999
Q ss_pred EEccC-CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE-EC
Q 021648 83 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA-FG 158 (309)
Q Consensus 83 ~d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~ 158 (309)
||+.+ -++++.+.||...|.++.|-|.|.+++|++.|.+|+.||+.++-|+.++..+..- ......++.+++.+ .|
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99976 6678899999999999999999999999999999999999999998887654432 23445677777765 57
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc---------------CCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---------------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~---------------dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
.++++|-+.+.+-. ..+..|.-.+.++++-| .+.++.+++-|++|++||+.++.++.++.
T Consensus 257 qtl~vW~~~t~~~k----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~- 331 (406)
T KOG0295|consen 257 QTLRVWVVATKQCK----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV- 331 (406)
T ss_pred ceEEEEEeccchhh----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-
Confidence 99999987653110 01112223344444322 23689999999999999999999998876
Q ss_pred cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEee
Q 021648 224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 296 (309)
Q Consensus 224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~ 296 (309)
.|.+.|..++|+|-|+||+|+.+|++++|||+.++++++++..|+..++++.|+.+..++++|+=| +++|+
T Consensus 332 --ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 332 --GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 467889999999999999999999999999999999999999999999999999999999999988 44453
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-37 Score=247.07 Aligned_cols=249 Identities=16% Similarity=0.263 Sum_probs=202.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
.+.+.|.||+-.|+.+..++||++.+|+|+|+++|+||+.+|++.+.|.+|...|.+++|+++..+++++|. |.+++
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr---DkTik 130 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR---DKTIK 130 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC---cceee
Confidence 457889999999999999999999999999999999999999999999999999999999999999999886 99999
Q ss_pred EEEccCCceEEEee-ecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE
Q 021648 82 LLSLHDNKYLRYFK-GHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA 156 (309)
Q Consensus 82 ~~d~~~~~~~~~~~-~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 156 (309)
+|+...+....... +|.+.|.++.|+|+ .-+++++|+|++|++||+++-+....+..+. .+.+.++|+|.+.+.+
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 99986644322222 23789999999997 5589999999999999998876655543322 3457788888877765
Q ss_pred -ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC------CC
Q 021648 157 -FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS------RN 229 (309)
Q Consensus 157 -~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~------~~ 229 (309)
.||.+.+||++..+. ++.+ ++...|++++|+|+...|+.+.. ..|+|||+.++..+.++...... ..
T Consensus 211 gkdg~~~LwdL~~~k~----lysl-~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~ 284 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKN----LYSL-EAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDP 284 (315)
T ss_pred CCCceEEEEEccCCce----eEec-cCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCc
Confidence 689999999976432 4444 34568999999998877766554 44999999998888776543221 12
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+..++|++||+.|++|-.|+.|++|.+..
T Consensus 285 ~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 285 ICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 356789999999999999999999999853
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-38 Score=263.75 Aligned_cols=287 Identities=23% Similarity=0.339 Sum_probs=229.4
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC---ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.|..|+++|.-+.||++|++|||||.|.|..||++..- +..+++.+|.++|..+.|+||.+++++++. |..++
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~e~~~ 294 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---DEVLS 294 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---hHhee
Confidence 567899999999999999999999999999999988643 346889999999999999999999998754 77899
Q ss_pred EEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee---eecCceeEEECCCC-cEEEEE
Q 021648 82 LLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGRPAAAYDDQG-LVFAVA 156 (309)
Q Consensus 82 ~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~ 156 (309)
+||+.+|..+..+. +|...+.+++|+||+..+++|+.|+++..||+..+. .... +.+.....+..+++ .++++.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 99999998776664 456889999999999999999999999999985432 2111 12222234444444 567777
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
.|..|++++........ +-....++.++++|.||+++++.-.+..+++||+....++..|..+.. ...++.-+|
T Consensus 374 ~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-~~fiIrSCF 447 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-GHFIIRSCF 447 (519)
T ss_pred cccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-cceEEEecc
Confidence 89999999865432111 111235789999999999999999999999999987776666654332 234556677
Q ss_pred CC-CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe-eEEEEccceEEEeeecCCC
Q 021648 237 SP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIPDLSK 301 (309)
Q Consensus 237 sp-~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~~~d~~~~~~~~~~ 301 (309)
.- +..++|+||+|+.|+||+..+++++.++.+|...|++|+|+|.. .+||+|+.|.++.+|.+++
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 54 56999999999999999999999999999999999999999965 6999999995555554443
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-38 Score=269.08 Aligned_cols=288 Identities=17% Similarity=0.287 Sum_probs=230.7
Q ss_pred ccceEecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 2 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
++++++.||+..|+++.|.| .+.+|+++|.|+.|+||++.. +.|++++.+|..+|..++|+.++..+++++ +|..
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s---fD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS---FDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee---ccee
Confidence 36789999999999999999 889999999999999999975 999999999999999999999999999876 4999
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeee--cCceeEEECCCC-cEEEE
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQG-LVFAV 155 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~ 155 (309)
+++||.++|+++..+. -...+.++.|+||+ +.|++|+.|+.|+.||+++++.+..+.. .......|-+.+ .++++
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999887764 22457899999998 8999999999999999999986544322 222334555554 56666
Q ss_pred EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe---EEeeecCCCCCccc
Q 021648 156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSRNSTL 232 (309)
Q Consensus 156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~ 232 (309)
+.|+.+++|+.+..-.-.+ ......-...+++.+|++.++++-+.|..|.+|.+...-.+ ..|+.+.. .+.-+
T Consensus 361 SDdks~riWe~~~~v~ik~---i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGys~ 436 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKN---IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGYSC 436 (503)
T ss_pred ccCccEEEEEcCCCccchh---hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-cCcee
Confidence 6789999999765321111 11112234568899999999999999999999986443222 33443322 34556
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe-eEEEEccceEEEeee
Q 021648 233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSELSFWIP 297 (309)
Q Consensus 233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~s~~~d~~~~~~ 297 (309)
.|.|||||++|++|+.||.+.+||..+.+.+.++.+|++.+..+.|||.. ..+|+++-|..+.+|
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 89999999999999999999999999999999999999999999999986 477888877555444
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.6e-38 Score=279.31 Aligned_cols=207 Identities=28% Similarity=0.439 Sum_probs=189.4
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
-+++-||+++|...+|+|+.++|+|+|.|+++|+|.+.+..|+..+.+|.++|..+.|+|.|-++++++ .|++.++|
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas---~D~tArLW 520 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS---HDQTARLW 520 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC---CCceeeee
Confidence 456889999999999999999999999999999999999999999999999999999999988888775 39999999
Q ss_pred EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM 163 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (309)
......+++.+.||.+.|.|+.|+|+.++++|||.|++||+||..++.. +|+
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----------------------------VRi 572 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----------------------------VRI 572 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----------------------------EEE
Confidence 9998999999999999999999999999999999999999999877653 333
Q ss_pred EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEE
Q 021648 164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 243 (309)
Q Consensus 164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l 243 (309)
| .||..+|.+++|||+|++|++|+.||.|.+||+..+.++..+.. |.+.+.++.||.||..|
T Consensus 573 F---------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 573 F---------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVL 634 (707)
T ss_pred e---------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEE
Confidence 3 25677899999999999999999999999999999998887764 46788999999999999
Q ss_pred EEEcCCCcEEEEECCC
Q 021648 244 ISGSGDGSVYAWSVRS 259 (309)
Q Consensus 244 ~s~s~Dg~i~vwd~~~ 259 (309)
|+||.|.+|++||+..
T Consensus 635 asgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCCeEEEEEchh
Confidence 9999999999999865
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=258.21 Aligned_cols=282 Identities=19% Similarity=0.303 Sum_probs=231.5
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 90 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~ 90 (309)
+.+|..|.|.|+|++|+||+.-|.+-+|+..+-.-...+..|.++|+.+.+++++..++++.. ++.||+|+.+.+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnn- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNN- 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhh-
Confidence 458999999999999999999999999997443333345689999999999999999998875 6789999987654
Q ss_pred EEEeeecc-cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEECCCC-cEEEEEECCEEEEEEC
Q 021648 91 LRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQG-LVFAVAFGGYIRMFDA 166 (309)
Q Consensus 91 ~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~i~~~d~ 166 (309)
++.+++|+ ..|++++|+|+...|+|||.||+|+|||+...+....++.++- .++...|.. .+++++.|+.|++||.
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 55566666 8999999999888999999999999999998888777765553 344555654 4555567899999999
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCCEEEE
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVIS 245 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s 245 (309)
|... .+.++++|...|..+.|+|++.+|++++.|..++++|+++.+.+.++. .|...++++.|+| .-..|.+
T Consensus 252 rSg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 252 RSGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred CCcc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceee
Confidence 8754 255777888899999999999999999999999999999766666655 4667889999999 4578899
Q ss_pred EcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCcc
Q 021648 246 GSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 303 (309)
Q Consensus 246 ~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~ 303 (309)
|+.||.|..|.+...+++..+ .+|...|.+++|+|=|.+|++|+.|..+..|...+++
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 999999999999866666654 5799999999999999999999998444444444444
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=230.59 Aligned_cols=281 Identities=16% Similarity=0.374 Sum_probs=222.8
Q ss_pred cceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCC---Cceeeee-eccccceeEEEEecCCCEEEEEcCCCCC
Q 021648 3 VGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA---ATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
+.+++++|.+.|..++|+|- |.+|||+|.|+.||||+... -.|...+ .+|+..|+.++++|++++++++|. |
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF---D 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF---D 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec---c
Confidence 56788999999999999997 88999999999999999874 4566555 467888999999999999988875 8
Q ss_pred ceeEEEEccCC--ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce---eeeeeeec--CceeEEECCC-
Q 021648 78 ESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLLRVQ--GRPAAAYDDQ- 149 (309)
Q Consensus 78 ~~i~~~d~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~---~~~~~~~~--~~~~~~~~~~- 149 (309)
.++-+|--+.+ +++.++.||..+|.+++|+++|++|||+|.|++|=+|...... +..++..+ ....+...|.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999986654 5788999999999999999999999999999999999876443 33344322 2334566765
Q ss_pred CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648 150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 229 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 229 (309)
+.++++++|++|++|+-.. ...-.-+.++.++...+.+++|+|.|..+++++.|++|+||-..+ .....|..
T Consensus 163 dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-------~~~~~~sr 234 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-------DLSGMHSR 234 (312)
T ss_pred ceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-------Ccchhccc
Confidence 4667778999999997543 111122557788888999999999999999999999999997542 12224556
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCCCc--e----EE-EeecCCCCCcEEEECCC-eeEEEEccce--EEEee
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGK--E----VA-SWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWI 296 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~--~----~~-~~~~~~~~v~~l~~~p~-~~~l~s~~~d--~~~~~ 296 (309)
.+..++|. ...|+|++.|+.|+++.....- + +. .-..|.-.|++|+|+|. ..+|++++.| +++|.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 77788997 6689999999999999987531 1 11 22468889999999996 6789999988 55554
No 22
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=239.86 Aligned_cols=274 Identities=16% Similarity=0.226 Sum_probs=216.9
Q ss_pred CCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC-Ccee-eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648 10 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 86 (309)
Q Consensus 10 h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~ 86 (309)
-++.|++|+||| ...+++.+|+|++||+|+++. |... +....|..++.++||+.++..+++++. |+++++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~---Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC---DKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc---CCceEEEEcc
Confidence 457899999999 455677999999999999975 3332 455667889999999999998887754 8999999999
Q ss_pred CCceEEEeeecccCEEEEEecCCCC--eEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648 87 DNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF 164 (309)
Q Consensus 87 ~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (309)
++ ++..+..|.++|+.+.|-+... .|+|||+|+++|+||+|..+++.++.++.+....--.......+..+..|.+|
T Consensus 103 S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 103 SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY 181 (347)
T ss_pred CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence 99 4677888999999999987655 89999999999999999999988888776644332222333444467889999
Q ss_pred ECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe--EEeeecCCC------CCccceEE
Q 021648 165 DARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS------RNSTLEAS 235 (309)
Q Consensus 165 d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~------~~~~~~~~ 235 (309)
++++.... ...... -.-.+++|+..+|....+.|+.+|++.|..+..+... .+|..|... ...|.+++
T Consensus 182 nL~n~~te---~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 182 NLENPPTE---FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EcCCCcch---hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99764321 111111 1236799999999999999999999999888776333 345544311 12466799
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
|+|.-..|+|+|.||++..||-....++.+...|+.+|++.+|+-+|.+|+.+-.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999999999999999999999988899999999999999999999999987653
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.5e-36 Score=245.94 Aligned_cols=284 Identities=17% Similarity=0.274 Sum_probs=236.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
++-+.+.+|.+-|.|+++.|-..+|+|||.|++++|||+.+|....++.+|...|..+++++-..+++++. .|++|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g---edk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG---EDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec---CCCeeE
Confidence 45677899999999999999999999999999999999999999999999999999999999888988775 489999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eE-EECCCCcEEEEEEC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AA-AYDDQGLVFAVAFG 158 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 158 (309)
-||++.++.++.+.||...|.+++.+|.-..|+||+.|.++|+||+++...+.++..+..+ .+ +..-++.+++++.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999999999999999999999999999999999999999999888777644322 22 23346789999999
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
++|++||++..+. ...+..+...+.+++..|....+++++.|. ++-|++..|..+..+. .|...+..++.+.
T Consensus 299 ~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls---gh~~iintl~~ns 370 (460)
T KOG0285|consen 299 STVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS---GHNAIINTLSVNS 370 (460)
T ss_pred ceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc---cccceeeeeeecc
Confidence 9999999987543 345556777899999999999999888775 5779999888887644 4555666777776
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEe---e-----cCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASW---M-----SFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~---~-----~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
|| ++++|++.|.+..||.+++-..... . .-.+.|.+-+|...+..|+++..|..+-++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 65 7799999999999999987543222 1 123467889999999999999988444433
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.7e-35 Score=229.09 Aligned_cols=268 Identities=15% Similarity=0.260 Sum_probs=216.1
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
++++--.+-|+.+.+.|+++.||+|++ ..||+||+.+++ ++.++++|...|+.+.|..++..+++++. |+++|+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse---Dgt~kI 109 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE---DGTVKI 109 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC---CceEEE
Confidence 455545567999999999999998875 589999999765 47899999889999999999999998764 899999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---CceeEEECCCCcEEEEEE-C
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVAF-G 158 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~ 158 (309)
||+..-.+.+.++ |.++|++|..+|+...|++|..+|.|++||+.+..+...+-.. ........+++..++++. -
T Consensus 110 WdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred EeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC
Confidence 9999876666665 7899999999999889999999999999999988765544221 123456667887777765 5
Q ss_pred CEEEEEECCCCCc--CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 159 GYIRMFDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 159 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
|..++|++-+... +-.++..+..+...+..+.+|||+++|++++.|.+++||+.... ..-+.... .+...++.++|
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~-gh~rWvWdc~F 266 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLT-GHQRWVWDCAF 266 (311)
T ss_pred ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEee-cCCceEEeeee
Confidence 8999999765321 11223334456667888999999999999999999999998776 22222222 35678999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 279 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~ 279 (309)
|.||+||+|||.|+.+++||++.++.++...+|-+...|++.+
T Consensus 267 S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999999998888887754
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-34 Score=279.26 Aligned_cols=282 Identities=16% Similarity=0.264 Sum_probs=217.1
Q ss_pred ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----c----eeeeeeccccceeEEEEecC-CCEEEEEcCCCCC
Q 021648 7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWD 77 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d 77 (309)
+..|.+.|.+++|+|+|++||||+.|++|+|||..+. . ....+.. ...+..++|++. +..+++++ .|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~---~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSN---FE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEe---CC
Confidence 3459999999999999999999999999999997542 1 1122222 346788888875 45666554 48
Q ss_pred ceeEEEEccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEE-CCCCcE-E
Q 021648 78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAY-DDQGLV-F 153 (309)
Q Consensus 78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~ 153 (309)
++|++||+.+++.+..+.+|.+.|++++|+| +++.|+||+.|++|++||++++.+...+.... .....+ .+.+.+ +
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA 634 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence 9999999999999999999999999999996 78899999999999999999887766554332 223334 344554 4
Q ss_pred EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC------eEeEEeeecCCC
Q 021648 154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVS 227 (309)
Q Consensus 154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~------~~~~~~~~~~~~ 227 (309)
+++.|+.|++||+++... ....+.+|...+..+.|. ++.++++++.|++|++||+..+ ..+..+. .|
T Consensus 635 tgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh 707 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GH 707 (793)
T ss_pred EEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CC
Confidence 455689999999986432 233455677789999997 7889999999999999998743 3444444 34
Q ss_pred CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-------------ecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 228 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-------------MSFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 228 ~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-------------~~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
...+..++|+|++++|++|+.|+.|++|+.....++..+ ..|...|.+++|+|++..|++|++|..+
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 566678899999999999999999999998765443322 2344568999999999999999998666
Q ss_pred eeecC
Q 021648 295 WIPDL 299 (309)
Q Consensus 295 ~~~~~ 299 (309)
.+|++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 66553
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=261.81 Aligned_cols=293 Identities=16% Similarity=0.268 Sum_probs=231.9
Q ss_pred ccceEecC-CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 2 EVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~-h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
++++.+++ |++||..++|+|.+.+|+|||.|+.+++||+..+.|++.|.+|...|..++|.|+..+-+..+ ++.|+++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s-g~~D~~v 173 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS-GATDGTV 173 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee-cCCCceE
Confidence 45677787 999999999999999999999999999999999999999999999999999999988633332 2349999
Q ss_pred EEEEccCCc-eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee-----------------------
Q 021648 81 RLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----------------------- 136 (309)
Q Consensus 81 ~~~d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~----------------------- 136 (309)
++||+++.. ++..+..|...|++++|.+|+..++++|.|+.+.+||+.+.+...++
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 999998544 58888999999999999999999999999999999997321100000
Q ss_pred ------------------------------------------------------------ee----cC------------
Q 021648 137 ------------------------------------------------------------RV----QG------------ 140 (309)
Q Consensus 137 ------------------------------------------------------------~~----~~------------ 140 (309)
+. .+
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 00 00
Q ss_pred ----c----------------------------eeEEE--CCCC-cEEEEEECCEEEEEECCCCC---------------
Q 021648 141 ----R----------------------------PAAAY--DDQG-LVFAVAFGGYIRMFDARKYE--------------- 170 (309)
Q Consensus 141 ----~----------------------------~~~~~--~~~~-~~~~~~~~~~i~~~d~~~~~--------------- 170 (309)
+ ..... ..++ .+++++.|.++++|.+.+..
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 0 00000 1223 33334457777777542100
Q ss_pred -------------------cCCceEE------------------EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC
Q 021648 171 -------------------KGPFDIF------------------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 213 (309)
Q Consensus 171 -------------------~~~~~~~------------------~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~ 213 (309)
...+++. ....|..++++|+++|+.+++++|+.|++.+||++.
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 0001111 112355789999999999999999999999999999
Q ss_pred CCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--
Q 021648 214 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-- 291 (309)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-- 291 (309)
...+..++. .|...+++|.|+|..+.+||+|.|++|+||.+.+..++++|.+|++.|-.++|-.++++|+|+++|
T Consensus 494 ~~~l~~vLs---GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 494 QLRLLGVLS---GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred CceEEEEee---CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence 888887776 577889999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEeeec
Q 021648 292 LSFWIPD 298 (309)
Q Consensus 292 ~~~~~~~ 298 (309)
+++|...
T Consensus 571 iKlWnik 577 (775)
T KOG0319|consen 571 IKLWNIK 577 (775)
T ss_pred EEEEecc
Confidence 7777653
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-35 Score=247.82 Aligned_cols=255 Identities=20% Similarity=0.317 Sum_probs=207.8
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+++.+|..|+++|.+++|+.+|++|++++.|+++.+||..+|++.+.+..|..+...+.|-.+. .+++++. |+.|+
T Consensus 267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~t---d~~i~ 342 (524)
T KOG0273|consen 267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSST---DGCIH 342 (524)
T ss_pred hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCC---CceEE
Confidence 5678899999999999999999999999999999999999999999999988775566765544 4444443 88999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 161 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (309)
|+-+....+++++.||+++|.++.|+|.+..|+|+|.|+|+++|.+....+...+..+.+. +++..
T Consensus 343 V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske---------i~t~~----- 408 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE---------IYTIK----- 408 (524)
T ss_pred EEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc---------eeeEe-----
Confidence 9999999999999999999999999999999999999999999998776665544332210 11100
Q ss_pred EEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648 162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240 (309)
Q Consensus 162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 240 (309)
|. +...+..+| ++..+++++.|++|++||...+.++.++.. |..+|.+++|||+|
T Consensus 409 --ws-------------------p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~~g 464 (524)
T KOG0273|consen 409 --WS-------------------PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSPNG 464 (524)
T ss_pred --ec-------------------CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecCCC
Confidence 00 001111222 467899999999999999999999998863 56789999999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
+++|+|+.||.|.+|++++++.+++..+ ++.|..|+|+.+|..++..-+|...+..++
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred cEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 9999999999999999999999988765 446899999999988887777766665554
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-34 Score=244.39 Aligned_cols=278 Identities=16% Similarity=0.306 Sum_probs=225.8
Q ss_pred CCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCC--Cceee------ee--ec----cccceeEEEEecCCCEEEEEcC
Q 021648 9 DYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTA--ATCLK------TI--NS----KKYGVDLVCFTSHPTTVIYSSK 73 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~--~~~~~------~~--~~----~~~~v~~~~~~~~~~~~~~~s~ 73 (309)
.|+.+|.+.+|+|-.. ++++|+.|-+.|+|++.. ..+.. .+ .+ ....|++++|+.+|+.+++++.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3999999999999776 999999999999999864 22211 11 11 1235899999999999999875
Q ss_pred CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee--EEECCCCc
Q 021648 74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDDQGL 151 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~--~~~~~~~~ 151 (309)
|+.+|+|+... ..+.++..|+++|.++.|+.+|+++++++-|+++.+||..++.....+.....+. +.......
T Consensus 256 ---~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 256 ---DGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred ---CcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 78999999754 5678899999999999999999999999999999999987777655554433321 23344556
Q ss_pred EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648 152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 231 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 231 (309)
+.+++.|+.|+++.+.... ++.++.+|...|+++.+.|.|.+|++++.|++++||.+......+.+. .|...+
T Consensus 332 F~ts~td~~i~V~kv~~~~----P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei 404 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDR----PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEI 404 (524)
T ss_pred EeecCCCceEEEEEecCCC----cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccce
Confidence 6777789999999875422 244566788999999999999999999999999999977666555544 355667
Q ss_pred ceEEECCC---------CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648 232 LEASFSPE---------GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 297 (309)
Q Consensus 232 ~~~~~sp~---------g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~ 297 (309)
..+.|+|. +..+++++.|+++++||+..+.++.+|+.|..+|.+|+|+|+++++++|+-| +.+|..
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 77888884 4689999999999999999999999999999999999999999999999998 555544
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=251.75 Aligned_cols=291 Identities=20% Similarity=0.377 Sum_probs=243.2
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
....|++.+|++.-+.||+|=..|...+|++..-.+++.+.-.++++..++|+..|+.++.++.. =+++.||+..+..
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEs 341 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSES 341 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccc
Confidence 34789999999999999999999999999999999999999988899999999999999998743 4689999999999
Q ss_pred eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECC-CCcEEEEEECCEEEEEEC
Q 021648 90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD-QGLVFAVAFGGYIRMFDA 166 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~i~~~d~ 166 (309)
++...+||-.++++++++|||.+++||+.||.|++||..++-|..++..+. +....+.. ...+++.+.||+++.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 999999999999999999999999999999999999999999988876543 33444443 446777788999999998
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 245 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s 245 (309)
..+.. +..++. +.+.+..+++..|.|..+.+|+.|. .|.+|+..+|.++..+. +|.++|..++|+|+|..|||
T Consensus 422 kRYrN--fRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRN--FRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS---GHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cccce--eeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc---CCCCcceeeEEccccCeEEe
Confidence 76542 222221 2234567889999999999998886 79999999999998765 57789999999999999999
Q ss_pred EcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee-cCCCccccccCC
Q 021648 246 GSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRK 309 (309)
Q Consensus 246 ~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~~~~~ 309 (309)
+|.|.+|++||+-... .+.++ .+...+..++|+|+|+.++.+.-| +.+|.+ +...++.+.|||
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred ccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 9999999999995543 34444 567789999999999999888876 777877 444556666664
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.7e-34 Score=228.44 Aligned_cols=238 Identities=21% Similarity=0.363 Sum_probs=204.8
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC------ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
-+.-|...+|+|.|+++|.|+.|+...||++.+. ...+.+.+|..-+.++.|.+ ...++++|. |.++-+|
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SG---D~TCalW 171 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSG---DMTCALW 171 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCC---CceEEEE
Confidence 3567889999999999999999999999999854 23466888887777777776 446777653 8999999
Q ss_pred EccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-ECC
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-FGG 159 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~ 159 (309)
|+++++.+..|.||.+.|.+++++| +++.|+||+-|++.++||+|.+.+...+..+. .+.+.|.|++.-++++ .|+
T Consensus 172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc
Confidence 9999999999999999999999999 99999999999999999999999888776543 4567888888777666 468
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
+.|+||+|.. ..+.++.......++++++||..|++|.+|-.|.++.+||.-+++....+. .|.++|.++..+||
T Consensus 252 tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 252 TCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSCLGVSPD 326 (343)
T ss_pred eeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEEEEECCC
Confidence 9999999963 345556655666789999999999999999999999999999998887765 57899999999999
Q ss_pred CCEEEEEcCCCcEEEEE
Q 021648 240 GMFVISGSGDGSVYAWS 256 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd 256 (309)
|.-++|||.|.+++||.
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 99999999999999994
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=260.11 Aligned_cols=295 Identities=17% Similarity=0.278 Sum_probs=250.4
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
..|..-+..|..++|+|...+++|+-..|.|++||..=+.++..|..|..+|..++|+|+...++++ |-|..|++|+
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSG---GDDykIkVWn 79 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSG---GDDYKIKVWN 79 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEec---CCccEEEEEe
Confidence 4567778899999999999999999999999999999999999999999999999999999888876 4499999999
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECC-CCcEEEEEECCEE
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD-QGLVFAVAFGGYI 161 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~i 161 (309)
+.+.+++.++.||.+.|+.+.|++..-+++|+|.|.|||+|+..+.+|+..++.+.+- ++.+.| ...+++++.|.+|
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 9999999999999999999999999889999999999999999999999988766543 345666 4567777789999
Q ss_pred EEEECCCCCc-----C--------------------CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648 162 RMFDARKYEK-----G--------------------PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 162 ~~~d~~~~~~-----~--------------------~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~ 216 (309)
|+||+...+. + ....+-+.||.-.|+-++|.|.-.++++|++|..|++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 9999753221 1 01123466888899999999999999999999999999875433
Q ss_pred EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce-EEEe
Q 021648 217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFW 295 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d-~~~~ 295 (309)
.-. ......|.+.|.++.|+|....|+|.|+|++|+|||+...+.+.+|..-+.....|+-||..++|+.|... .-++
T Consensus 240 aWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 240 AWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred cee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 322 22334577899999999999999999999999999999999999998888889999999999999999863 5555
Q ss_pred eecCCCcc
Q 021648 296 IPDLSKLG 303 (309)
Q Consensus 296 ~~~~~~~~ 303 (309)
-.+..+++
T Consensus 319 kleRErpa 326 (1202)
T KOG0292|consen 319 KLERERPA 326 (1202)
T ss_pred EEcccCce
Confidence 55555544
No 32
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=248.51 Aligned_cols=282 Identities=24% Similarity=0.419 Sum_probs=227.2
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
..+..|.++|..+.|-++...|+||+.|..|++|++...+ .+.++.+...+++.+.|.+++..+++++. |+.+++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r~ 245 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLRL 245 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCceee
Confidence 3467899999999999999999999999999999997655 56788888888999999999988887653 899999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEECCEE
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYI 161 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i 161 (309)
|++.+.+...++.||++.|+++.|......+++|+.|+++++||+....|..++-..... ..... ...++++-.|++|
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~-~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS-ISDVISGHFDKKV 324 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec-ceeeeecccccce
Confidence 999999999999999999999999877667999999999999999888776654322111 11111 2234444468999
Q ss_pred EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC-ccceEEECCCC
Q 021648 162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN-STLEASFSPEG 240 (309)
Q Consensus 162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~sp~g 240 (309)
|+||.|.... .....++ ..+.++..+++|..+++.+-|.++.++|+++.+...++........ ....+.|||++
T Consensus 325 RfwD~Rs~~~--~~sv~~g---g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 325 RFWDIRSADK--TRSVPLG---GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred EEEeccCCce--eeEeecC---cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 9999886432 1122222 3689999999999999999999999999999888888764322222 24578999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCC--CCcEEEECCCeeEEEEccce--EEEe
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDT--EPPVIKWTPGSLMFVTGSSE--LSFW 295 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~~p~~~~l~s~~~d--~~~~ 295 (309)
.|+|+||.||.|+||++.+++....+..-.+ .|++++|+|.|..+++++.+ +.+|
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999988766654333 59999999999999999887 5555
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=249.11 Aligned_cols=282 Identities=15% Similarity=0.248 Sum_probs=233.0
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCC-CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D-~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
+++..+.--..+|..++|+..|.+||-|+.- |.+-||+..+..-+-...+|-..+.+++++|||..+++++. |+.|
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---DgKV 374 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---DGKV 374 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---CCcE
Confidence 4556666556789999999999999988864 79999999877767777888889999999999999998875 8899
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEEE-
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVA- 156 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~- 156 (309)
|+||..++-|+.+|..|+..|+++.|+..++.++++|.||+||.||+...++..++..+.. .+.+.++.+.++.++
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 9999999999999999999999999999999999999999999999999888888766543 345667777766655
Q ss_pred EC-CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceE
Q 021648 157 FG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 157 ~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~ 234 (309)
.| -.|.+|++++.+. +..+.||..+|.+++|+|+|..|++++-|++|++||+.... ...++. ....+..+
T Consensus 455 ~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~v 526 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAV 526 (893)
T ss_pred cceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccceeEE
Confidence 44 3799999876542 34578899999999999999999999999999999986542 333443 23567889
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEee--------------------cCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------------SFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--------------------~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
+|+|||+.||.+..||.|.+||+..+..+.++. .-....+.|+|++||..+.+|+.-..+
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 999999999999999999999998765543221 123567889999999999999975333
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=237.07 Aligned_cols=246 Identities=23% Similarity=0.378 Sum_probs=213.3
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
++...++||.++|.+|+|+..|++|||+|.|-.+++||.++ .+|++.+.+|...|.+++|-|.++++++++. |++|
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---D~ti 217 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---DNTI 217 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc---ccce
Confidence 45678899999999999999999999999999999999986 7889999999999999999999999998764 9999
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeE--------EEC-----
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--------AYD----- 147 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~--------~~~----- 147 (309)
+.|++.++-++++|.+|...|+.+..+.||..++|++.|.++++|-+.+.+|...++....+.. .+.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 9999999999999999999999999999999999999999999999988876655543332210 111
Q ss_pred ----CCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648 148 ----DQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 222 (309)
Q Consensus 148 ----~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~ 222 (309)
+.+.++. ++.|++|++||+... .-++++.+|.+.|..++|+|.|++|++..+|+++++||+..+.++.+.+
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 1223444 456999999998763 4578999999999999999999999999999999999999999988776
Q ss_pred ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648 223 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 223 ~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
. |..-+..++|+.+--+++||+.|-++++|.-
T Consensus 374 a---h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 A---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred C---CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 3 4566788999998899999999999999974
No 35
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.4e-33 Score=225.32 Aligned_cols=272 Identities=20% Similarity=0.273 Sum_probs=210.7
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 90 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~ 90 (309)
+..|+++.|+|.++.|+.+||||++|+||+...+....+ .|..++..++|.+. ..++++ +.|+.||.+|+++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G---~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTG---GLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEe---ccCceEEEEEecCCcc
Confidence 568999999999999999999999999999877444444 45668899999874 345554 4599999999998764
Q ss_pred EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648 91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 170 (309)
..+..|.+.|+++.+++-...++|||+|++|++||.+...+...+...++..+....+..++.++.+..+.+||+|+..
T Consensus 88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 4466799999999999888899999999999999998755554443333333333344566666789999999999875
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC----eEeEEeeecCCC------CCccceEEECCCC
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVS------RNSTLEASFSPEG 240 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~----~~~~~~~~~~~~------~~~~~~~~~sp~g 240 (309)
... +.. ...-..++++|++-|++.-+++++.||+|.+=..... .....|..|... ..+|.+++|+|--
T Consensus 167 ~~~-q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 167 EPF-QRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred chh-hhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 421 111 1112246789999999999999999999998443333 223344444222 2367789999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
+++|||+.||.|.+||+.+.+.+..+...+..|.+++|+-+|.+||.|++
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999988888999999999999999986
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=228.03 Aligned_cols=249 Identities=20% Similarity=0.378 Sum_probs=214.8
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
+-+|.||+++|.+..++.+..+.||++.|=+.+|||.-+|..++.++. +.-|..++|+.+.++++++ |.+..+|+|
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltg---g~ekllrvf 127 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTG---GQEKLLRVF 127 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhcc---chHHHhhhh
Confidence 458999999999999999999999999999999999999999998875 4468899999999999976 458899999
Q ss_pred EccCCc-eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEECCEE
Q 021648 84 SLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFGGYI 161 (309)
Q Consensus 84 d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 161 (309)
|++..+ +.+.+.+|.+.|+.+.|+...+.++|++.|++||+||.+++..+..+..+. ..++.++.++.+++.+.++.|
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCcee
Confidence 998754 678899999999999999888899999999999999999998887776653 446778899999999999999
Q ss_pred EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648 162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
+.||..++.. ++-+ .-+..|.+...+|+...+++|+.|..++.||..+++.+..+. .+|.++|.++.|+|||.
T Consensus 208 ~Fwdaksf~~--lKs~---k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--kgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 208 KFWDAKSFGL--LKSY---KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--KGHFGPVHCVRFSPDGE 280 (334)
T ss_pred EEeccccccc--eeec---cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--cCCCCceEEEEECCCCc
Confidence 9999876542 1111 123467788899999999999999999999999999888753 25678999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCceE
Q 021648 242 FVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
..|+||+||+|++|.+..++.-
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeccCCCceEEEEEecCCCch
Confidence 9999999999999999766543
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=247.60 Aligned_cols=284 Identities=17% Similarity=0.305 Sum_probs=240.4
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
.++.||...|.++++|.+...++||+ .++++||+..+++|++++... -+.+.+|-|...+++.+.. .|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEEE
Confidence 35679999999999999988888885 569999999999999999876 3677889999999998876 56899999
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc--------eee-----eeeeec-CceeEEECCCC
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--------KCQ-----GLLRVQ-GRPAAAYDDQG 150 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~--------~~~-----~~~~~~-~~~~~~~~~~~ 150 (309)
+.+...+.+.+.|.+.|+.++.+||++.++|||.|.+|++||++-. +.. .++... ...+..++|++
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999996411 111 111122 12356788999
Q ss_pred cEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648 151 LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 229 (309)
Q Consensus 151 ~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 229 (309)
.+++++ .|+++++|=+.+++- ..++=||.-+|.++.+|||++++++++.|+.|++|-+.=|.+-..+- .|..
T Consensus 521 k~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdD 593 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDD 593 (888)
T ss_pred cEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccC
Confidence 999988 499999997654321 34566888899999999999999999999999999887777766553 4667
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 301 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~ 301 (309)
.|.++.|-|+...+.|+|.|+.|+-||-..-+.+.++.+|...|.|++.+|+|.++++++.|..+.+|+.-+
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 899999999999999999999999999999999999999999999999999999999999996666665444
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=218.17 Aligned_cols=275 Identities=14% Similarity=0.231 Sum_probs=220.6
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee--eeccccceeEEEEecC-CCEEEEEcCCCCCceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~i~ 81 (309)
+.+++|.+.|.+|+|+.+|..|++|+.|+++++|+++....... ..+|...|..+|+.|. ++.+++++. |.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEE
Confidence 45679999999999999999999999999999999987755443 4677777888888774 455665553 88999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEE-CC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAF-GG 159 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 159 (309)
+||+.+++++.......+.+ -+.|+|+|++++.++.|..|.+.|.++.+......... ........++.++.... -|
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999988877555554 46889999999999999999999998887665544332 22344555554444444 48
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
+|.|......+ ++.++..|.....++.|+|+|+++|+|+.|-.+.+||+..--++..+. -+.-+|..++||-|
T Consensus 170 ~v~ILsypsLk----pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~d 242 (313)
T KOG1407|consen 170 CVEILSYPSLK----PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHD 242 (313)
T ss_pred eEEEEeccccc----cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccC
Confidence 99998755433 255667787888899999999999999999999999987655555443 24467888999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
|++||+||+|-.|-|=++++|..+.+++ +.++...|+|||...+|+-+++|
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999998874 67789999999999999998875
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=225.36 Aligned_cols=284 Identities=12% Similarity=0.175 Sum_probs=219.5
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+++..+.+|+..|+++.|+.||.+||||+.+|.|+||+..++.....+...-..+.=++++|.+..+++++. |+.+-
T Consensus 97 e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsvW 173 (399)
T KOG0296|consen 97 EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSVW 173 (399)
T ss_pred cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcEE
Confidence 567788999999999999999999999999999999999999888887655445666889998888888875 88999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---ceeEEECCC-CcEEEEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQ-GLVFAVAF 157 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~ 157 (309)
.|.+.++...+.+.||..++++=.|.|+|++++++..||+|++||+.++++...+.-.. .+....... ..++.+..
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 99999988899999999999999999999999999999999999999998877664111 111111111 12222223
Q ss_pred CCEEEEEE--------CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648 158 GGYIRMFD--------ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 229 (309)
Q Consensus 158 ~~~i~~~d--------~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 229 (309)
++..++-. ..+...+.+. .........+.++.+|..-.+.|+|+.||+|.|||..+.++.+... |..
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~-~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~----he~ 328 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELK-PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE----HED 328 (399)
T ss_pred CccEEEEccccceEEEecCCCCcccc-ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc----CCC
Confidence 33332222 1111111100 0011111234445566677888999999999999998877766543 556
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
.|+.+.|-+ ..+|+++..||.|+.||.++|+.+.++.+|...|.+++++|+.++++|+|.|...
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 789999988 8999999999999999999999999999999999999999999999999998443
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-31 Score=230.44 Aligned_cols=284 Identities=17% Similarity=0.290 Sum_probs=232.3
Q ss_pred EecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 6 SFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
.+.||+..|++++|=|... +++|||.|++|.+|+-.--+-..+++.|..-|.++-|+||++.+++++. |+++.+||
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---Dgki~iyD 218 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---DGKIYIYD 218 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---CccEEEEc
Confidence 4679999999999998765 6999999999999986555556678888888999999999999998764 89999999
Q ss_pred ccCCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-----eeEEECCCCcEEEEE
Q 021648 85 LHDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-----PAAAYDDQGLVFAVA 156 (309)
Q Consensus 85 ~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 156 (309)
=.+++.+..+. +|++.|.+++|+||+..|+|+|.|+++|+||..+.+++.++.+... ..+.. ..+.+++++
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW-qkd~lItVS 297 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW-QKDHLITVS 297 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE-eCCeEEEEE
Confidence 99999999998 8999999999999999999999999999999999999888876543 12333 377899999
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe-----------EEe----
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-----------STY---- 221 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~-----------~~~---- 221 (309)
.+|.|.+++..... ....+.||...+++++.+||+++|.+++.||+|.-||..++..- ..+
T Consensus 298 l~G~in~ln~~d~~----~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 298 LSGTINYLNPSDPS----VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred cCcEEEEecccCCC----hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 99999999977543 34566789899999999999999999999999999997654311 100
Q ss_pred -----------------------------eecCCC----------------------------------CCccceEEECC
Q 021648 222 -----------------------------NVKPVS----------------------------------RNSTLEASFSP 238 (309)
Q Consensus 222 -----------------------------~~~~~~----------------------------------~~~~~~~~~sp 238 (309)
....++ .-...+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 000000 11223588999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 297 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~ 297 (309)
++.++|.|+.|+.++||.+...+. ...+..|.+++++++||||+.+||++..- +-+|..
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~ 516 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV 516 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence 999999999999999999977553 33567899999999999999999998754 445544
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.5e-32 Score=227.54 Aligned_cols=280 Identities=22% Similarity=0.327 Sum_probs=216.0
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC---EEEEEcCCCCCceeEEEEc
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~i~~~d~ 85 (309)
.|.+-|++|... ++.++||++||++||||. .|++++++.+|..++..+++..... .+++++ .|.++++|-.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas---~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS---MDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEec---CCceEEEEEe
Confidence 478889988887 679999999999999996 5899999999999998766654332 355554 5999999998
Q ss_pred cCCce----EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-----------------------eeeeee
Q 021648 86 HDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-----------------------QGLLRV 138 (309)
Q Consensus 86 ~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-----------------------~~~~~~ 138 (309)
+.++. ++.-+||++.|-+|...+++..++|||+|.++++|+.++... ...+.+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 87653 445569999999999999999999999999999999321100 000011
Q ss_pred cC----ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648 139 QG----RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 139 ~~----~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~ 214 (309)
.+ ...+.+.+....++++.|.+|+.||+..... ...+. .....+++..+|..++|++|+.|.++++||+++
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccc----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 11 2235566778889999999999999876432 11111 124578899999999999999999999999987
Q ss_pred CeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCeeEEEEccceE
Q 021648 215 GTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSSEL 292 (309)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~ 292 (309)
+.-.........|.+.|..+.|+|. -.+|++||.|+++++||+++.+ ++..+.+|...|.++.| ..+.++++|+.|.
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW-~~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW-NEGGLIVSGGADN 410 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec-cCCceEEeccCcc
Confidence 5322111112257788999999995 5788999999999999999987 89999999999999998 4567899999997
Q ss_pred EEeeecCC
Q 021648 293 SFWIPDLS 300 (309)
Q Consensus 293 ~~~~~~~~ 300 (309)
++.+-..+
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 77655443
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.5e-34 Score=243.78 Aligned_cols=246 Identities=20% Similarity=0.320 Sum_probs=198.2
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCCCCCcee
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i 80 (309)
+.+++|.+|+.+|.+++|+++|..++|+|.|+++++||+++|.|+..+.... .+.++.|.|++. .++++ +.|+.|
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~fl~G---~sd~ki 324 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIFLVG---GSDKKI 324 (503)
T ss_pred ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-CceeeecCCCCCcEEEEe---cCCCcE
Confidence 4688999999999999999999999999999999999999999999887643 467889999884 44444 458999
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee---ecCceeEEECCCCcEEE-EE
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQGLVFA-VA 156 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 156 (309)
+.||+.+++.+..+..|.+.|..+.|-++|++|+|++.|+++++|+.+.+-.+..+. +...+++...|.+.+++ -+
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 999999999999999999999999999999999999999999999988765544332 22334556666665554 46
Q ss_pred ECCEEEEEECCCC-CcCCceEEEeCCCC--CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648 157 FGGYIRMFDARKY-EKGPFDIFSVGGDI--SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 233 (309)
Q Consensus 157 ~~~~i~~~d~~~~-~~~~~~~~~~~~~~--~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
.|+.|.+|.+... +....+.+ .+|. .-...|.|||||++|++|..||.+.+||..+-.++..+. .|...++.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~f--eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~ 479 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRF--EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIG 479 (503)
T ss_pred cCceEEEEecccccccCHhhhh--cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEE
Confidence 7899999985421 11111111 1221 233567899999999999999999999999888877665 35677889
Q ss_pred EEECCC-CCEEEEEcCCCcEEEEE
Q 021648 234 ASFSPE-GMFVISGSGDGSVYAWS 256 (309)
Q Consensus 234 ~~~sp~-g~~l~s~s~Dg~i~vwd 256 (309)
+.|+|. ...+||+|.||.|++||
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 999995 58999999999999996
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-32 Score=248.40 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=204.4
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEc-CCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.+.+.+|...|++++|+|+++++++++.|+++||||+ ..+.+++++.+|...|.+++|+|.++.+++++. |++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTVR 271 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcEE
Confidence 56677899999999999999999999999999999999 567999999999999999999999977777754 99999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce--eeeeeeec-C---ceeEEECCCCcEEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQ-G---RPAAAYDDQGLVFAV 155 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~--~~~~~~~~-~---~~~~~~~~~~~~~~~ 155 (309)
+||++++++++.+.+|.+.|.+++|+++++.|++++.|+.|++||+.++. +...+.-. . ...+.+++++.++.+
T Consensus 272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999988 33433221 2 234567777766665
Q ss_pred E-ECCEEEEEECCCCCcCCceEEEeCCCCC---CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648 156 A-FGGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 231 (309)
Q Consensus 156 ~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 231 (309)
+ .|+.+++||++.... .....++.. .+.....+++++++++++.|+.|++||..++..+..+..+. ...+
T Consensus 352 ~~~d~~~~~w~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~~ 425 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKS----VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAAV 425 (456)
T ss_pred ecCCCeEEEEEccCCcc----eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC--CCce
Confidence 5 567999999986432 122223333 23344568899999999999999999999887777666432 5677
Q ss_pred ceEEECCCCCEEEEEc--CCCcEEEEECC
Q 021648 232 LEASFSPEGMFVISGS--GDGSVYAWSVR 258 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s--~Dg~i~vwd~~ 258 (309)
..++++|..+++++++ .|+.+++|...
T Consensus 426 ~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 426 SDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eccccCCCcCeeeecCcCCCceEEEecCC
Confidence 8899999999999998 78999999864
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=220.59 Aligned_cols=284 Identities=18% Similarity=0.315 Sum_probs=233.4
Q ss_pred cceEecCCCcceEEEEeC---CCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 3 VGMSFRDYNGRISSMDFH---KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s---~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
.+.+..||+.+|-.++|| |+|-+|++++.|+.-.+-+-++|.=+-+|++|+..|...++..+....++++. |-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa---dft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA---DFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc---cch
Confidence 456789999999999998 58999999999999999999999999999999999999998877766655543 889
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC-----ceeEEECCCCcEEE
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-----RPAAAYDDQGLVFA 154 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 154 (309)
.++||.-+|..+..|. |+--|++++|+.|.++|+||+.++.+|++|+...+-.. ..+.+ +...-...+..+++
T Consensus 83 akvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEe
Confidence 9999999999888886 88899999999999999999999999999986543211 11111 11223345667888
Q ss_pred EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
.+.|++||+||.|+... +.++. -..+++++.+++||+++ +....+.|..||..+-.+++.+.. ...|.+.
T Consensus 161 Sadd~tVRLWD~rTgt~----v~sL~-~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~----P~nV~SA 230 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTE----VQSLE-FNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKM----PCNVESA 230 (334)
T ss_pred eccCCceEEEEeccCcE----EEEEe-cCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccC----ccccccc
Confidence 88899999999987542 22332 23578999999999976 455677899999999888887764 2456678
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEccce--EEEeeecCCC
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK 301 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~~ 301 (309)
+++|+-.++++|++|..++.||..+++.+..+ ++|.++|.||.|+|+|...++|++| +++|..-..+
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 89999999999999999999999999999886 8999999999999999999999998 6677554433
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=240.22 Aligned_cols=279 Identities=19% Similarity=0.310 Sum_probs=230.8
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
++-++|..|+..|.+|.|+|...+++++-+.|.|.|||.++....+.++-...+|+.+.|-.-.+.++++|. |..||
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceEE
Confidence 445678889999999999999999999999999999999999999999998999999999998999999986 88999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-eeeeeeeecC--ceeEEECCC--CcEEEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYDDQ--GLVFAVA 156 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~--~~~~~~~~~--~~~~~~~ 156 (309)
+|++++++.++.|..|.+-|++++.+|..-+++|+|.|.+|++||.+.+ .|..++..+. ....++.|. ..+.+++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999899999999999999997654 2233333222 234455543 3566667
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
.|++|++|.+.. +...+++.+|...|++|.+-+.| .++++|++|.+|+|||..+..++.+++ .|.+.+..+
T Consensus 161 LDrTVKVWslgs----~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v 233 (794)
T KOG0276|consen 161 LDRTVKVWSLGS----PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFV 233 (794)
T ss_pred ccccEEEEEcCC----CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEE
Confidence 899999999864 44568888999999999997755 699999999999999999999988877 466778889
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
.|+|.=-.++|||+||+++||+..+-+...++.---..+.|++-.+.++.++.|..
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 99999999999999999999999887665554433345566665555554444443
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=241.09 Aligned_cols=285 Identities=22% Similarity=0.273 Sum_probs=239.1
Q ss_pred ccceEecCCCcceEEEEe-CCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 2 EVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~-s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
++.+++.|.+++|..++| .|+.++||.++.-..+|+|+..+..|. .+.+|...|..+....++..+++++. |.++
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK---D~sv 389 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK---DKSV 389 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecC---CceE
Confidence 456788899999999998 578899999999999999999988887 88999999999887677777777765 9999
Q ss_pred EEEEccCCc----eEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceee---eee------ee--cCceeE
Q 021648 81 RLLSLHDNK----YLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ---GLL------RV--QGRPAA 144 (309)
Q Consensus 81 ~~~d~~~~~----~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~---~~~------~~--~~~~~~ 144 (309)
++|-++++. ++....||.+.|.+|+++-.+ .+|+|+|.|+++++|++...+.. ..+ +. ...+++
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 999885443 355667999999999997543 48999999999999998652211 111 11 123566
Q ss_pred EECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 145 AYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 145 ~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
.+.|...+++++ .|.+.++|++.+.. ..-.+.||.-.+.+|.|+|..+.+++++.|++|+||.+.+..++.+++
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e- 544 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE- 544 (775)
T ss_pred EecCCCceEEecccccceeeecccCce----EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-
Confidence 777777777766 58999999987322 244678999999999999999999999999999999999999999987
Q ss_pred cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648 224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
+|...|..+.|-.+|++|+|++.||-|++|++.+++++.++-.|+..|.+++-+|...+++||+.|.++=.|
T Consensus 545 --GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 545 --GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred --CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 467889999999999999999999999999999999999999999999999999999999999999554333
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-32 Score=246.02 Aligned_cols=244 Identities=22% Similarity=0.327 Sum_probs=192.5
Q ss_pred eEec-CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--------------------------------C--------
Q 021648 5 MSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------------------------------A-------- 43 (309)
Q Consensus 5 ~~~~-~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--------------------------------~-------- 43 (309)
+.+. +|+++|.++.||+||+||||||.|+.||||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 8999999999999999999999999999998754 0
Q ss_pred --------------------ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEE
Q 021648 44 --------------------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS 103 (309)
Q Consensus 44 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~ 103 (309)
++++.+.+|...|..+.|+.++ +++++| +|.+||||.+...+++++|. |.+-|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSS---MDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSS---MDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEecc---ccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 0112255677777788887643 555554 69999999999999999998 9999999
Q ss_pred EEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE-ECCCCCcCCceEEEeCC
Q 021648 104 LSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF-DARKYEKGPFDIFSVGG 181 (309)
Q Consensus 104 v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-d~~~~~~~~~~~~~~~~ 181 (309)
|+|+| |.++|+|||-|+.||||++...+ |-.| |++
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~-----------------------------Vv~W~Dl~-------------- 451 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKK-----------------------------VVDWNDLR-------------- 451 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCe-----------------------------eEeehhhh--------------
Confidence 99999 78899999999999999975433 2222 121
Q ss_pred CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-----CCCccceEEECCC-CCEEEEEcCCCcEEEE
Q 021648 182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPE-GMFVISGSGDGSVYAW 255 (309)
Q Consensus 182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vw 255 (309)
.-|+++||+|||++.+.|+.+|.+++|+....++.....+... ....|+.+.|.|. -..++..+.|..|||+
T Consensus 452 --~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 452 --DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred --hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 2378999999999999999999999999987776665544321 1236888888874 4578888999999999
Q ss_pred ECCCCceEEEeecCCCC--CcEEEECCCeeEEEEccceEEEeeec
Q 021648 256 SVRSGKEVASWMSFDTE--PPVIKWTPGSLMFVTGSSELSFWIPD 298 (309)
Q Consensus 256 d~~~~~~~~~~~~~~~~--v~~l~~~p~~~~l~s~~~d~~~~~~~ 298 (309)
|.++.+.+..|+++... -....|++||+.+++|++|..+++|.
T Consensus 530 d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 530 DGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred eccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 99988888888865422 35677999999999999995555554
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=235.76 Aligned_cols=243 Identities=18% Similarity=0.342 Sum_probs=204.8
Q ss_pred ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
+++|..+|+++.|++++.+++||+.||.||+|+.. ...++.+..|. ..|++++|+|+...++++|. |++|++||.
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf 209 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGTIKIWDF 209 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecC---CCeEEEEec
Confidence 35999999999999999999999999999999975 44556666555 78999999998888888875 899999999
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCc-EEEEEECCEEE
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL-VFAVAFGGYIR 162 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~ 162 (309)
...++-+.+.||...|++++|+|....++|+|.|..|++||.+++.|+.++..+... .+.+.+.+. +++++.|..++
T Consensus 210 ~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 210 RMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred cCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 988888889999999999999999999999999999999999999998887655433 345665554 55566799999
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
++|+|.++ +++...+|...+.+++++|- ..+|.+++.||.|..|....-+.+.. ....|...|++++|+|=|.
T Consensus 290 v~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~--i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 290 VFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE--IPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred EEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC--CCcccccceeeeeccccce
Confidence 99999543 25566778889999999995 46778899999999999874444432 3456788999999999999
Q ss_pred EEEEEcCCCcEEEEECCC
Q 021648 242 FVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~ 259 (309)
.|++|+.|.+++.|....
T Consensus 364 il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 364 ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eEeecCCCcceeeeccCC
Confidence 999999999999999754
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=230.80 Aligned_cols=266 Identities=15% Similarity=0.308 Sum_probs=206.2
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
..+.|.|+.++ ...++||..|+||+|||..+.+|.+.+.+|...|.++.+ +...++++|+ |.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCc
Confidence 34678888776 468999999999999999999999999999988877766 4446666665 8999999999999
Q ss_pred eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee---eeecC--ceeEEECCCCcEEEEEECCEEEEE
Q 021648 90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQG--RPAAAYDDQGLVFAVAFGGYIRMF 164 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~ 164 (309)
+++++-+|.+.|..+.|+. .+++|+|.|.++.+||+.+..-+.. +..+. .+.+.| ++..+++++.|.+|++|
T Consensus 269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf-d~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVW 345 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-ccceEEEecCCceEEEE
Confidence 9999999999999999974 6899999999999999987653222 11111 122223 33456666778999999
Q ss_pred ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648 165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 244 (309)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 244 (309)
++.+.+- +-++++|.-.+.|+.+ .|+++++|+.|.+|++||+..|.++..++. |..-+.++.| |.+.++
T Consensus 346 ~~st~ef----vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRF--d~krIV 414 (499)
T KOG0281|consen 346 STSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKRIV 414 (499)
T ss_pred eccceee----ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc---hHHhhhheee--cCceee
Confidence 9865321 3456777777766655 689999999999999999999998887664 4455667788 678999
Q ss_pred EEcCCCcEEEEECCCCc---------eEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648 245 SGSGDGSVYAWSVRSGK---------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 298 (309)
Q Consensus 245 s~s~Dg~i~vwd~~~~~---------~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~ 298 (309)
+|+.||+|+|||+.++. ++.++..|++.|..+.| |..++++.+-| +-+|.-.
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 99999999999997754 24456678999988988 55556655544 6667543
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=231.59 Aligned_cols=283 Identities=17% Similarity=0.295 Sum_probs=212.9
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc----eeeeee-ccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
.+|++|+..|+++++.|.|.+|+|||.|.+|++||+..+. ..+.+. .....+..+.+++++..+++.+. ..+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---SAQ 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---Ccc
Confidence 3678999999999999999999999999999999997432 223332 23446889999999999888763 567
Q ss_pred eEEEEccCCc---------eE---EEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeee-eeee---cC--
Q 021648 80 LRLLSLHDNK---------YL---RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRV---QG-- 140 (309)
Q Consensus 80 i~~~d~~~~~---------~~---~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~---~~-- 140 (309)
.+|+|-...+ ++ ..-+||...+++.+|+|+.+ .|+|++.||++|+||....+... ++.. .+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 8999865433 22 33468999999999999765 89999999999999986544321 2211 11
Q ss_pred --ceeEEECCCCcEEEEE-ECCEEEEEECCCCCc-CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-
Q 021648 141 --RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG- 215 (309)
Q Consensus 141 --~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~- 215 (309)
...+.+++++..+|++ .||.|.+|+.++... +.+.+...+....++++|+||+||++|++.+.|+++++||++..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 2356788888766654 799999999765433 33334444444458999999999999999999999999999763
Q ss_pred eEeEEeeecCCCCCccceEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEcc
Q 021648 216 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 289 (309)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~ 289 (309)
+.+.....-+ ....-..++|||+.+.|+||.. .|++.+||..+.+.+.++.--+..|..+.|||.-+++..|+
T Consensus 398 kpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 398 KPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred cchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 3333322111 1123457899999999999965 46899999999988888765577888999999987777777
Q ss_pred ce
Q 021648 290 SE 291 (309)
Q Consensus 290 ~d 291 (309)
.|
T Consensus 477 gd 478 (641)
T KOG0772|consen 477 GD 478 (641)
T ss_pred CC
Confidence 66
No 51
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.2e-30 Score=236.71 Aligned_cols=231 Identities=15% Similarity=0.190 Sum_probs=177.3
Q ss_pred EecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCC-------ceeeeeeccccceeEEEEecCCC-EEEEEcCCCC
Q 021648 6 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW 76 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~ 76 (309)
.+.+|++.|.+++|+| ++++|+|||.|++|+|||+.++ +++..+.+|...|..++|+|++. .+++++ .
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~ 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---A 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---C
Confidence 5789999999999999 8899999999999999999764 35678889999999999999864 555554 4
Q ss_pred CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648 77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 156 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
|++|++||+++++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||+++++....+..+.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------------- 210 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------------- 210 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC----------------
Confidence 8999999999999999999999999999999999999999999999999998776433221100
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe----CCCcEEEEECCCCe-EeEEeeecCCCCCcc
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGT-LLSTYNVKPVSRNST 231 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~----~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~ 231 (309)
......+.+.+++..+++.+ .|+.|++||+++.. .+...... ....+
T Consensus 211 --------------------------~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~~~~~ 262 (493)
T PTZ00421 211 --------------------------SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--QSSAL 262 (493)
T ss_pred --------------------------CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC--CCCce
Confidence 00112345666666666544 47899999987643 22222211 12234
Q ss_pred ceEEECCCCCEEEEEc-CCCcEEEEECCCCceEEEeec-CCCCCcEEEECCCee
Q 021648 232 LEASFSPEGMFVISGS-GDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSL 283 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~ 283 (309)
....|+|++++|++++ .|+.|++||+.+++.+..... ++.+...++|.|...
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence 4567999999999988 599999999999887665433 445677888888543
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.2e-32 Score=219.56 Aligned_cols=282 Identities=19% Similarity=0.332 Sum_probs=230.2
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--------ccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
+.+.-+.|..|+|||++|+|||.||.|-+||..+|+..+.+. -+..+|.+++|+.|.+.+++++. |+.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcE
Confidence 345668899999999999999999999999999998766543 34567999999999988887764 8899
Q ss_pred EEEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEEEE
Q 021648 81 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVA 156 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~ 156 (309)
++|-+++|.+++.|. .|...|+++.|+.|+..++++|.|.++|+--++++++...++.+. .+.+.+.+++ .+++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 999999999999997 899999999999999999999999999999999999887765432 2334555554 688888
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
.||+|++|+..+.+ ....+...+...+++.+..-| +-..++.+....+|+|.++ .|..+.++....-..+...+++
T Consensus 368 sDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE
Confidence 99999999976432 222233334445677776655 3466778888889999887 4777777754333345677889
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceE--EEee
Q 021648 236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL--SFWI 296 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~--~~~~ 296 (309)
.||.|.++++.++|+.++.+.+.+|+...+++-|...+..++-||-.+++++.++|+ ++|-
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999994 4553
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-31 Score=229.38 Aligned_cols=265 Identities=20% Similarity=0.272 Sum_probs=220.4
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
.+.|.--+-+|.+..|-+..+++++||.|..||||+..+++.+++|+.|..-+++++.+|.-.+++++|. |.+|++|
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~iKlW 124 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTIKLW 124 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEEEEe
Confidence 4566666778999999999999999999999999999999999999999999999999999999999886 8999999
Q ss_pred EccCC-ceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCC---cEEEEE
Q 021648 84 SLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG---LVFAVA 156 (309)
Q Consensus 84 d~~~~-~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~ 156 (309)
|.+.+ .+.++|.||..-|.+++|+| |.+.|+|+|-|+||++|.+.++.+..++..+ +.++..|-+.+ .+++++
T Consensus 125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC
Confidence 99875 57889999999999999999 6789999999999999999888887777543 44566665443 788888
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
.|.+|++||.++.. -+.++.||...++.++|.|.-..+++|+.||+|+||...+-.+..++.. .-.++++++-
T Consensus 205 DD~tiKvWDyQtk~----CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~---gleRvW~I~~ 277 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKS----CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY---GLERVWCIAA 277 (794)
T ss_pred CCceEEEeecchHH----HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc---CCceEEEEee
Confidence 89999999986522 3567889999999999999999999999999999999888777776654 3367899999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
.+.++.++.|.+.|.|.+ .+.. ..+.+.+.++|+.+-+.+++
T Consensus 278 ~k~~~~i~vG~Deg~i~v-~lgr------------eeP~vsMd~~gKIiwa~~~e 319 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVTV-KLGR------------EEPAVSMDSNGKIIWAVHSE 319 (794)
T ss_pred cCCCCeEEEeccCCcEEE-EccC------------CCCceeecCCccEEEEcCce
Confidence 999999999988876544 3333 33455556666666665554
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-32 Score=223.01 Aligned_cols=244 Identities=19% Similarity=0.277 Sum_probs=195.9
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
..+.+.||+|+|.|+.|+. +.++|||.|.||+|||+++|+++.++.+|-..|..+.|+. .+++++|. |.++++
T Consensus 229 c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSk---DrsiaV 301 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSK---DRSIAV 301 (499)
T ss_pred HHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecC---CceeEE
Confidence 4567889999999999875 5999999999999999999999999999988888888764 47888775 899999
Q ss_pred EEccCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC-cEEEEEEC
Q 021648 83 LSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVFAVAFG 158 (309)
Q Consensus 83 ~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 158 (309)
||+.... ..+++.||.+.|+.|.|. .++++|+|.|++|++|++.+..++.++..+..-.++.+..+ .++++++|
T Consensus 302 Wdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 302 WDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred EeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCC
Confidence 9997643 467789999999999986 46999999999999999999999888876655555666555 45556679
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe----e--ecCCCCCccc
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----N--VKPVSRNSTL 232 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~----~--~~~~~~~~~~ 232 (309)
++|++||+....- +--++||..-+.++.| |.+.+++|+.||+|++||+..+...... . .-..|.+.+.
T Consensus 380 ntIRlwdi~~G~c----LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 380 NTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred ceEEEEeccccHH----HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 9999999875431 2235577777888888 6788999999999999998765432111 0 1123456777
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648 233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
.+.| |...+++++.|.+|-|||..++.+-
T Consensus 454 rLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 454 RLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 7777 7789999999999999999876543
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=2.4e-30 Score=205.65 Aligned_cols=278 Identities=17% Similarity=0.210 Sum_probs=220.4
Q ss_pred EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
-++||+.+++.|+++.+|.+|.|++.|.+..+|=...|+.+-++.+|...|.++....+.+.+++++. |+++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEEc
Confidence 36799999999999999999999999999999988899999999999999999999999999999875 999999999
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEecC-----CCcEEEeeCCC-------ceeeeeeeecC--ceeEEECCCC-
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQRA-------EKCQGLLRVQG--RPAAAYDDQG- 150 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-----Dg~v~~Wd~~~-------~~~~~~~~~~~--~~~~~~~~~~- 150 (309)
++|+++..++ -..+|+.+.|++++++++.+.. -+.|.++|++. ..+...+..+. ...+...+.+
T Consensus 82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 9999988776 5678999999999987666653 35788999873 33333333332 2234555555
Q ss_pred cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648 151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 230 (309)
Q Consensus 151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 230 (309)
.++++..+|.|..||+++... -+.....|...++.+.+|||..++++++.|.+-++||..+-+++++|.. ..+
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t----e~P 233 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT----ERP 233 (327)
T ss_pred EEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee----ccc
Confidence 466666789999999987432 2233344566899999999999999999999999999999999998874 356
Q ss_pred cceEEECCCCCEEEEEcCCCcE--EEEECCCC------------ceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 231 TLEASFSPEGMFVISGSGDGSV--YAWSVRSG------------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 231 ~~~~~~sp~g~~l~s~s~Dg~i--~vwd~~~~------------~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
+.+.+++|-..+++.|+.-... .-=+.+.+ +.+...++|=++|++|+|||+|+..++|++|.++
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 7788999988888887654322 11112222 2345567899999999999999999999999443
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.8e-30 Score=206.48 Aligned_cols=246 Identities=16% Similarity=0.277 Sum_probs=196.1
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
-+++++|+++|..+.|.+|++.++++|.|++|+.||+++|++++.+.+|..-|..++-..-+..++.+. ..|+++|+|
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~ 160 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLW 160 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec--CCCceEEEE
Confidence 357789999999999999999999999999999999999999999999988888777555555555543 239999999
Q ss_pred EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCC-cEEEEEECCE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG-LVFAVAFGGY 160 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~ 160 (309)
|+.+.+.++++. -+..++++.|..++..+++|+-|+.|++||++.+....++.....+ ....++.+ .+++-+.|.+
T Consensus 161 D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t 239 (338)
T KOG0265|consen 161 DIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT 239 (338)
T ss_pred eecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce
Confidence 999888777764 4567999999999999999999999999999988877766544333 23444444 5666677999
Q ss_pred EEEEECCCCCcCC--ceEEEeCCCCC--CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 161 IRMFDARKYEKGP--FDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 161 i~~~d~~~~~~~~--~~~~~~~~~~~--~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
+++||+|-+.... ..++.-+.+.. ....++.||+++.+.+|+.|+.+++||......+..+ +.|.+.|.++.|
T Consensus 240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl---pGh~gsvn~~~F 316 (338)
T KOG0265|consen 240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL---PGHYGSVNEVDF 316 (338)
T ss_pred EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc---CCcceeEEEeee
Confidence 9999998765322 33333222322 3345688999999999999999999998765555433 457788999999
Q ss_pred CCCCCEEEEEcCCCcEEEE
Q 021648 237 SPEGMFVISGSGDGSVYAW 255 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vw 255 (309)
+|...+|.+++.|.+|++=
T Consensus 317 hp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 317 HPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cCCCcEEEEeccCceeEee
Confidence 9999999999999999873
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-30 Score=200.94 Aligned_cols=244 Identities=19% Similarity=0.298 Sum_probs=203.4
Q ss_pred eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEe
Q 021648 46 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 125 (309)
Q Consensus 46 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~W 125 (309)
.+.+..++.+|..+-|..+|++.+++.. |.++|+|+...+..++++.||-.+|..++.+.|+..|++|+.|+.+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGs---drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGS---DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCC---CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 4566778888999999999999998743 9999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeeeeeecC--ceeEEECCCC-cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648 126 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 202 (309)
Q Consensus 126 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 202 (309)
|..+++....++.+. .+...|.+.. .+++++.|..+++||.|.....|.+++.. ....+.++.. .+..+++|+
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v--~~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDV--AEHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEe--cccEEEeec
Confidence 999999888776543 3455666554 45556689999999998766555554432 3345666666 478899999
Q ss_pred CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC--CcEEEECC
Q 021648 203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE--PPVIKWTP 280 (309)
Q Consensus 203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~--v~~l~~~p 280 (309)
.||+++.||++.|.+...+- ..++.+++|+|||+..++++.|+++++.|-.+|+.++..++|... -...+++.
T Consensus 163 ~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence 99999999999998876543 356788999999999999999999999999999999999998754 34466788
Q ss_pred CeeEEEEccceEEEeeecCCC
Q 021648 281 GSLMFVTGSSELSFWIPDLSK 301 (309)
Q Consensus 281 ~~~~l~s~~~d~~~~~~~~~~ 301 (309)
....+++|++|.+++.|+|.+
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cceeEEeccCCceEEEEEecc
Confidence 889999999998888777744
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-30 Score=232.28 Aligned_cols=248 Identities=21% Similarity=0.361 Sum_probs=205.2
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
++-.|.+|.|+|..|.|+|++.+++|||.|.+|++|+..+.+|+.++.+|-.-|..+.|++.-..++++|. |.+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD---DQTIrI 119 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD---DQTIRI 119 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC---CCeEEE
Confidence 45578999999999999999999999999999999999999999999999988999999998889999886 899999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee------------------ee--------
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG------------------LL-------- 136 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~------------------~~-------- 136 (309)
|+..+++++.++.||.-.|.|..|+|....++|+|-|.+||+||+..-+... .+
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 9999999999999999999999999999999999999999999974211000 00
Q ss_pred -ee----cCceeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEE
Q 021648 137 -RV----QGRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 210 (309)
Q Consensus 137 -~~----~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~ 210 (309)
.+ .+.+-+++.|. ..+++++.|..|++|.... .....+-+..+|.+.|.++-|.|....+++.+.|+.|+||
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 00 11223455554 3456666788999997642 3344556677899999999999999999999999999999
Q ss_pred ECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 211 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 211 d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
|+.+.+.+.++.. ...+.|.++-+|..+.+|+|- |+.+.||.++.
T Consensus 278 Dm~kRt~v~tfrr---endRFW~laahP~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRR---ENDRFWILAAHPELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred ecccccceeeeec---cCCeEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence 9999999988863 235678899999999887775 55577777764
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=8.3e-29 Score=209.98 Aligned_cols=244 Identities=27% Similarity=0.454 Sum_probs=202.5
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+...+.+|...+..+.|+|+++++++++.|+.+++||+.+++.+..+..|...+..+++.+++..++++. .|+.+++
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~ 119 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKV 119 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEE
Confidence 3467788999999999999999999999999999999998888888888888899999999876666654 3789999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEEEEECC
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGG 159 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 159 (309)
||+.+++.+..+..|...+.++.|+|+++++++++.|+.+++||+++++....+.... .....+.+++ .+++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence 9999888888999999999999999998889888889999999998777665554332 2345666666 555666699
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
.+++||++..+. ......+...+.+++++|++.++++++.+|.+++||..++.....+. .+...+..++|+|+
T Consensus 200 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~ 272 (289)
T cd00200 200 TIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPD 272 (289)
T ss_pred cEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCC
Confidence 999999875321 22232445578999999999999888889999999998888777665 34567889999999
Q ss_pred CCEEEEEcCCCcEEEEE
Q 021648 240 GMFVISGSGDGSVYAWS 256 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd 256 (309)
++++++++.|+.+++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 99999999999999996
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9.5e-30 Score=231.31 Aligned_cols=251 Identities=21% Similarity=0.370 Sum_probs=201.9
Q ss_pred ceE-ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 4 GMS-FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 4 ~~~-~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+.+ |.||.+.|.+++|..-+.+|++||.|.++|+||..+|.|.+.+.+|...+.++... +..++.+ +.|.+|++
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sg---s~D~tVkV 315 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSG---SRDNTVKV 315 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeec---cCCceEEE
Confidence 444 89999999999999878899999999999999999999999999999877766543 3344443 35999999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEEECCE
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFGGY 160 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 160 (309)
|+++++..+..+.+|.+.|+++... +..+++|+.|++|++||+++.++...+..+... ...++....++.++.|+.
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTT 393 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccc
Confidence 9999999999999999999999987 679999999999999999999998887654322 223333377888889999
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 240 (309)
|++||+++.. .-+..+.++..-+.. +...++.|++++.|++|++||...++++..+... +...+..+++. -
T Consensus 394 IkvWdl~~~~---~c~~tl~~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~ 464 (537)
T KOG0274|consen 394 IKVWDLRTKR---KCIHTLQGHTSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--K 464 (537)
T ss_pred eEeecCCchh---hhhhhhcCCcccccc--cccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC--c
Confidence 9999998753 123455555554433 3457899999999999999999999999887642 33455555554 4
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCC
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFD 270 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 270 (309)
..+++++.|+++++||+++++....+..+.
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred ceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 788999999999999999999888764433
No 61
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=206.27 Aligned_cols=285 Identities=19% Similarity=0.307 Sum_probs=211.5
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-----eee-eeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-----~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
...|++|.++|++++|+.||++|||++.|++|||||+..-+ |++ +++.. ..+.+.|+||-..++....+ .
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~--g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKR--G 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEcc--C
Confidence 35689999999999999999999999999999999997532 221 22221 35788999999877766654 3
Q ss_pred ceeEEEEccC---Cce---------EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--cee
Q 021648 78 ESLRLLSLHD---NKY---------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPA 143 (309)
Q Consensus 78 ~~i~~~d~~~---~~~---------~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~ 143 (309)
.++++|-+.. |.. +..-+.|+..+-.+.....+++++|++.|-+|.+|+++ ++....+.... ...
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 5899997643 222 12234577788888888888999999999999999998 66555554322 123
Q ss_pred EEECCCCcEEE-EEECCEEEEEECCCCCcCCc----eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC---
Q 021648 144 AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPF----DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--- 215 (309)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~--- 215 (309)
+..+|+|++++ +++.-.+++|++--.+.+.+ .++.+.||.+.|..++|||+.+.+++.+-||++++||..-.
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 56677776555 55778899999754444333 36788999999999999999999999999999999997421
Q ss_pred ----eEeEEeeec-CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee-cCCCCCcEEEECCCeeEEEEcc
Q 021648 216 ----TLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSLMFVTGS 289 (309)
Q Consensus 216 ----~~~~~~~~~-~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~s~~ 289 (309)
..+.++... .........++.+|+|+-||... ...++++..++++...++. .|++.|++|+|+|+|+++++.+
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 222222110 11223445899999999887764 4569999999988776653 5899999999999999999987
Q ss_pred ce-EEE
Q 021648 290 SE-LSF 294 (309)
Q Consensus 290 ~d-~~~ 294 (309)
.- +++
T Consensus 393 dr~vrv 398 (420)
T KOG2096|consen 393 DRYVRV 398 (420)
T ss_pred ceeeee
Confidence 63 444
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=228.85 Aligned_cols=271 Identities=20% Similarity=0.306 Sum_probs=220.9
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee-eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
|...+.+..|. +.++.+++.|+++++||..++..+.. +.+|...|..+++..-+..+++++. |.++|+||..+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEeEecCCC
Confidence 55678888888 56899999999999999999999888 9999999999999876667887765 999999999999
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEECCEEEEEECC
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGGYIRMFDAR 167 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~ 167 (309)
+++.++.||.+.|.++...+ ..+++||.|.+|++|++.++++..++..+..+ ....-....+++++.|++|++||++
T Consensus 282 ~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred cEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence 99999999999999987754 67889999999999999999998888743322 2333346778888899999999998
Q ss_pred CCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-eEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 168 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
.++ -+..+.+|...|.++.+.+. ..+.+|+.|++|++||+.+. +++.++.. |..-+. .+...+++|+++
T Consensus 360 ~~~----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~---h~~~v~--~l~~~~~~Lvs~ 429 (537)
T KOG0274|consen 360 TGK----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG---HTSLVS--SLLLRDNFLVSS 429 (537)
T ss_pred hce----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC---Cccccc--ccccccceeEec
Confidence 543 25577888888988877665 88999999999999999998 77776653 333332 345588999999
Q ss_pred cCCCcEEEEECCCCceEEEeec-CCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 247 SGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 247 s~Dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
+.|++|++||..+++++.++.+ |.+.+..+++. ...+++++.|.++-.|++
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 9999999999999999999988 66788888876 556666666644444444
No 63
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.7e-30 Score=210.57 Aligned_cols=238 Identities=15% Similarity=0.225 Sum_probs=200.7
Q ss_pred eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648 48 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 127 (309)
Q Consensus 48 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~ 127 (309)
.+.+|..+|.++++-|..+.+++++. |+++++||+++|+...++.||...|+.|++++-.-++.+++.|+.|++||+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~---DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSA---DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCC---CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 46789999999999999888887764 999999999999999999999999999999998889999999999999999
Q ss_pred CCceeeeeeeec--CceeEEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC
Q 021648 128 RAEKCQGLLRVQ--GRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME 204 (309)
Q Consensus 128 ~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d 204 (309)
+.++.+.....+ +..+....| ...+++++.|..+|+||+|. +..+..+.||..+|..|.+.|-...+++++.|
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt----r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT----RASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc----cceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 988776554322 222233333 45677788899999999997 34578889999999999999888889999999
Q ss_pred CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeE
Q 021648 205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM 284 (309)
Q Consensus 205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 284 (309)
++|++||++.|+-..++. .|...+.+++.+|.-..+|++|.|. |+-|++..+..+..+.+|++.+++++-+.|+-+
T Consensus 299 ~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~ 374 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVL 374 (460)
T ss_pred ceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceE
Confidence 999999999988777665 3567788999999999999999987 999999999999999999999999998888766
Q ss_pred EEEccce--EEEeee
Q 021648 285 FVTGSSE--LSFWIP 297 (309)
Q Consensus 285 l~s~~~d--~~~~~~ 297 (309)
+ +|+.. +-+|.|
T Consensus 375 ~-~G~dng~~~fwdw 388 (460)
T KOG0285|consen 375 V-SGGDNGSIMFWDW 388 (460)
T ss_pred E-EcCCceEEEEEec
Confidence 5 44444 455555
No 64
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8.5e-29 Score=225.91 Aligned_cols=238 Identities=13% Similarity=0.223 Sum_probs=175.9
Q ss_pred cceEecCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCc--------eeeeeeccccceeEEEEecCCCEEEEEcC
Q 021648 3 VGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTVIYSSK 73 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 73 (309)
.+..|.+|.++|.+++|+|+ +++|||||.|++|+|||+.++. ++..+.+|...|..++|+|++..+++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg- 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS- 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE-
Confidence 34678999999999999996 7899999999999999997542 3346788888999999999988765432
Q ss_pred CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEE
Q 021648 74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 153 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (309)
+.|++|++||+.+++.+..+. |...|.+++|+|+|+.|++++.|++|++||+++++....+..+. +...
T Consensus 145 -S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~---------g~~~ 213 (568)
T PTZ00420 145 -GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD---------GGKN 213 (568)
T ss_pred -eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc---------CCce
Confidence 348999999999988777775 67889999999999999999999999999998876543332110 0000
Q ss_pred EEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC----cEEEEECCC-CeEeEEeeecCCCC
Q 021648 154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVSR 228 (309)
Q Consensus 154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg----~v~i~d~~~-~~~~~~~~~~~~~~ 228 (309)
. ..+....|++++.++++++.|+ +|+|||++. +..+....... +.
T Consensus 214 -------s----------------------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~ 263 (568)
T PTZ00420 214 -------T----------------------KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-AS 263 (568)
T ss_pred -------e----------------------EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-Cc
Confidence 0 0012235678999999888774 799999985 55555443321 22
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee--cCCCCCcEEEECCCee
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSL 283 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~ 283 (309)
+.+.-.-..++|.++++|+.|++|++|++..+. +..+. .+..+...++|.|...
T Consensus 264 ~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 264 APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 222222335569999999999999999997763 33332 2456778899999754
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-30 Score=204.16 Aligned_cols=239 Identities=19% Similarity=0.309 Sum_probs=189.3
Q ss_pred CcceEEEEeCCCC-CEEEEeeCCCcEEEEEcC-CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 11 NGRISSMDFHKSS-SYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 11 ~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
++.+..++|+++. +.+++++.||++||||.. ...+++.++.|+..|..+.+.+-..+.+..+ +||++||+|+....
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCCCC
Confidence 5678899999864 688999999999999964 3457889999999999999988766665554 58999999999999
Q ss_pred ceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEE--EC-CCC-cEEEEEECCEEEE
Q 021648 89 KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA--YD-DQG-LVFAVAFGGYIRM 163 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~i~~ 163 (309)
+.+.++.||...|....|+| ..+.|+++|.|+++++||++.......+..+.....+ .. .+. .+.+++.|+.||.
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 99999999999999999999 4789999999999999998865333334433311121 21 233 4455567999999
Q ss_pred EECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECC-CC
Q 021648 164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSP-EG 240 (309)
Q Consensus 164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp-~g 240 (309)
||+|+.+.+ ++.+.+|.-.|+.++|||.. ..|++++.|-+++|||..... .+.++. .|..-+..+.||+ ++
T Consensus 218 wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 218 WDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFDP 291 (311)
T ss_pred Eehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEEeccccccccC
Confidence 999998764 55667788889999999975 678889999999999987543 333333 3555667788988 68
Q ss_pred CEEEEEcCCCcEEEEEC
Q 021648 241 MFVISGSGDGSVYAWSV 257 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~ 257 (309)
.++|+++.|+.++||+-
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 89999999999999984
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=216.79 Aligned_cols=248 Identities=16% Similarity=0.260 Sum_probs=192.5
Q ss_pred CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+++.+++.+|..+|..|.||||.++|++++.|..+++||+.+|.+.+.+... ...+.+++|.||+..+++++. |++
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~ 335 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRT 335 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCc
Confidence 4788999999999999999999999999999999999999999999888654 677899999999999998875 899
Q ss_pred eEEEEccCCceEEEeeec-ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-CceeEEECCCCcEEEEE-
Q 021648 80 LRLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVA- 156 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 156 (309)
+..||+..+. ...-++- .-.|.++++.+||+++++...|..+++++.++......+... .......+.++.++.+.
T Consensus 336 i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 336 IIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 9999987654 2333332 246899999999999999999999999998765444333322 23345556666666555
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCe--EEEEc-cCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDAN--VVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 233 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~v~~s-~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
.+..+++||+..... +....|+...-. .-||. .+..++++|+.|++|+||+..+++++.++. +|...|.+
T Consensus 415 ~~qei~LWDl~e~~l----v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNc 487 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKL----VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNC 487 (519)
T ss_pred ccCeeEEeecchhhH----HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeE
Confidence 578999999863211 111222222111 12343 345899999999999999999999998876 46678889
Q ss_pred EEECCC-CCEEEEEcCCCcEEEEECCC
Q 021648 234 ASFSPE-GMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 234 ~~~sp~-g~~l~s~s~Dg~i~vwd~~~ 259 (309)
|+|+|. -.++|+||+||+||||....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999995 58899999999999998864
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=202.59 Aligned_cols=260 Identities=18% Similarity=0.296 Sum_probs=207.8
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC--EEEEEcCCCCCcee
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESL 80 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~i 80 (309)
++..|.+|.++|++++.+ +.++||||.|-+|+|||..+..++..+-.|...++++.|.++-. .+++++. |+.|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd---DG~i 109 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD---DGHI 109 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC---CCcE
Confidence 467889999999999987 68999999999999999999999999999999999999988765 6777765 8899
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEEECC
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVAFGG 159 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (309)
.+|+...=+.++++++|++.|+.++++|.++.-+|.+.|+.++.||+-.++....+++...+ .+.+.+.+..++.+..+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 99999888999999999999999999999999999999999999999888877776665443 35677888888888889
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE--C
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--S 237 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--s 237 (309)
.|-+|.+.+-. ++..-.....+.++.| -++..+++|+.|+.|.+||..+...+..+. .|.++|-.+.+ .
T Consensus 190 ~i~i~q~d~A~-----v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 190 KIDIYQLDNAS-----VFREIENPKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIASYTN 260 (362)
T ss_pred EEEEEecccHh-----Hhhhhhccccceeeee-cCCceEEEecCCceEEEeccCCCccceeee---cchhheeeeEEEec
Confidence 99999875421 1100000112334444 367788999999999999998877777766 35667766663 6
Q ss_pred CCCCEEEEEcCCCcEEEEECCCC-----ceEEEeecCCCCCcEEE
Q 021648 238 PEGMFVISGSGDGSVYAWSVRSG-----KEVASWMSFDTEPPVIK 277 (309)
Q Consensus 238 p~g~~l~s~s~Dg~i~vwd~~~~-----~~~~~~~~~~~~v~~l~ 277 (309)
|++.+|+|+|.||.|+|||++.. +.+..+.. +..++|+.
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~ 304 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR 304 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence 78999999999999999999775 23444332 34556654
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.3e-28 Score=238.53 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=192.9
Q ss_pred CCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCceeEEEEccC
Q 021648 10 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD 87 (309)
Q Consensus 10 h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d~~~ 87 (309)
+...|.+++|+| ++.+|||++.|++|+|||+.+++.+..+.+|...|..++|++ ++..+++++. |++|++||+.+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCC
Confidence 356789999987 478999999999999999999999999999999999999997 6677777754 88999999999
Q ss_pred CceEEEeeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCce-eeeeeeecC--ceeEEECCCCcEEEEEECCEEEE
Q 021648 88 NKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRM 163 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~ 163 (309)
++.+..+..| ..|.++.|+ ++++.|++|+.|+.|++||++..+ ....+..+. ...+.+.+...+++++.|+.|++
T Consensus 608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 9888888755 689999995 568999999999999999998754 222222221 22344555667777888999999
Q ss_pred EECCCCCcC--CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec----------CCCCCcc
Q 021648 164 FDARKYEKG--PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNST 231 (309)
Q Consensus 164 ~d~~~~~~~--~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----------~~~~~~~ 231 (309)
||++..... ...+..+.++...+..++++|++.++++++.|+.|++|+......+..+... ..+...+
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 998753211 1234566777778899999999999999999999999998665444332211 1123457
Q ss_pred ceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648 232 LEASFSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
.+++|+|++..|++|+.||.|+||++
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEec
Confidence 88999999999999999999999996
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.2e-29 Score=208.97 Aligned_cols=275 Identities=20% Similarity=0.283 Sum_probs=234.8
Q ss_pred cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648 12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 91 (309)
Q Consensus 12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~ 91 (309)
..+.++...|..+.++||+.|.++.++|..+++.+.++.+|...+..+.++++...++.++. |..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCc
Confidence 35778888888789999999999999999999999999999999999999999888888775 889999998777777
Q ss_pred EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----CceeEEECCCCcEEEEEE-CCEEEEEEC
Q 021648 92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYIRMFDA 166 (309)
Q Consensus 92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~i~~~d~ 166 (309)
.....|.++|+.+..+|.|.+|++++.||++-+-|++++.+....... ...+..++|++.++..+. |+.+++||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 778889999999999999999999999999999999999877655442 134578899999998774 899999998
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
.... ..-...+|..+|..++|+.+|.+++++..|+.|++||+++.+...++.... ...+..++|.+.|++|+.+
T Consensus 377 ks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEee
Confidence 7643 234455788899999999999999999999999999999988777766432 2357789999999999999
Q ss_pred cCCCcEEEEECC--CCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648 247 SGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW 295 (309)
Q Consensus 247 s~Dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~ 295 (309)
|.|=.|++++-. .+.++..+..|++..+.+.|....+++++++.|..+-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheE
Confidence 888777776633 5667888889999999999999999999999985543
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2e-28 Score=202.26 Aligned_cols=296 Identities=14% Similarity=0.224 Sum_probs=229.8
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
+++|..|+++|.+++.+|+.++++|||.|....||+..+|+.+.++.+|+..|.++.|+.++.+++++ ++++.|++|
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG---dmsG~v~v~ 133 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG---DMSGKVLVF 133 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec---CCCccEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999988875 568999999
Q ss_pred EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEEE-ECCE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA-FGGY 160 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~ 160 (309)
...++.....+.+--+.+--+.|+|-...|+.|+.||.+-+|.+.++....++.-+..+ .-.+.|+|+.+.++ .|++
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99999988888877788888999999999999999999999998775444444333322 22455666655554 5899
Q ss_pred EEEEECCCCCcCCceEEEeCCC-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-----cCCCC---Ccc
Q 021648 161 IRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-----KPVSR---NST 231 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~~---~~~ 231 (309)
|++|++.+.. ++ +.+.+. .....++.++..+..+..+..++.+++-+..+|+.+...+. .+.+. .++
T Consensus 214 i~~Wn~ktg~--p~--~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 214 IIVWNPKTGQ--PL--HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred EEEEecCCCc--ee--EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 9999987653 22 222211 12346778888999999999999999999888888876552 11111 223
Q ss_pred ceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee-cCCCccccccC
Q 021648 232 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGR 308 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~~~~ 308 (309)
-.+.|+..-...|+|+.||+|-|||+...+ ++..-.|...|+.+.|-+ ...|.+++.+ ++.|.. -.+.+..|.||
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 334455566788999999999999998764 444446888899999999 7777777777 555644 34455566666
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9e-30 Score=206.41 Aligned_cols=248 Identities=19% Similarity=0.326 Sum_probs=199.6
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC------------C------ceeeeeeccccceeEEEEecCCC
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------A------TCLKTINSKKYGVDLVCFTSHPT 66 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 66 (309)
.++..|++++.+.+|+|||.++||||.|.+|||.|++. | ..|+++..|...|..+.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 46778999999999999999999999999999999861 1 23677888888999999999888
Q ss_pred EEEEEcCCCCCceeEEEEccCCce---EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee
Q 021648 67 TVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 143 (309)
Q Consensus 67 ~~~~~s~~g~d~~i~~~d~~~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~ 143 (309)
.+++++. |++|++||+..-.. .++++ -..+|+++.|+|.|.+|+.|..--+++++|+.+-+|.-.
T Consensus 186 ILiS~sr---D~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-------- 253 (430)
T KOG0640|consen 186 ILISGSR---DNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-------- 253 (430)
T ss_pred eEEeccC---CCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee--------
Confidence 8887765 89999999865432 22332 345899999999999999999999999999987765311
Q ss_pred EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
..| ..++...+++|.+|+.|++.++++.||.|++||..++.++.++..
T Consensus 254 --anP------------------------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 254 --ANP------------------------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred --cCc------------------------------ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence 001 012445688999999999999999999999999999988887754
Q ss_pred cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee------------------------------------
Q 021648 224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM------------------------------------ 267 (309)
Q Consensus 224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~------------------------------------ 267 (309)
.+ ....|.+..|+.+|+|+++.|.|..+++|.+.+++.+....
T Consensus 302 AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 302 AH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred hc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence 32 23567788999999999999999999999999887544331
Q ss_pred -------------cCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648 268 -------------SFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 268 -------------~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
+|++.+..+.-||.+.-|.+++.|-+...|
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 467777778889999999999998444333
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-29 Score=206.88 Aligned_cols=249 Identities=22% Similarity=0.286 Sum_probs=201.3
Q ss_pred CccceEecCCCcceEEEEeCC-C--CCEEEEeeCCCcEEEEEcCCCce----eeeeeccccceeEEEEecCCCEEEEEcC
Q 021648 1 MEVGMSFRDYNGRISSMDFHK-S--SSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSK 73 (309)
Q Consensus 1 ~~~~~~~~~h~~~V~~i~~s~-~--~~~l~t~s~D~~v~iWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 73 (309)
++..+++.||.++|.+++|.. + ...|+|+|.|+++++|-.+.++. ++.-.+|+..|.++...+++..++++|
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS- 212 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS- 212 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-
Confidence 356789999999999888743 2 23699999999999998876543 344459999999999999999988775
Q ss_pred CCCCceeEEEEccCC-------------------------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648 74 NGWDESLRLLSLHDN-------------------------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 128 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~-------------------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~ 128 (309)
||.++++|+.++. .++-.+.||.++|.+|.|++ ...+.|+|+|.+|+.||++
T Consensus 213 --~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 213 --WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred --ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 6999999993211 23567899999999999997 5689999999999999999
Q ss_pred CceeeeeeeecC-ceeEEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCC
Q 021648 129 AEKCQGLLRVQG-RPAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG 205 (309)
Q Consensus 129 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg 205 (309)
++++...+.... ..+..+.+...+++ ++.|.-|++||.|+. .+....+++.+|.+-|.++..+|.. ..|++++.|+
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 999887776543 23455566555444 557899999999986 4567778888999999999999976 4578899999
Q ss_pred cEEEEECCCCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 206 HIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 206 ~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
++++||.++.. .+..+. .|...+.++.|+ ++..|++||.|.+|+|+.-.
T Consensus 369 t~klWDvRS~k~plydI~---~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIA---GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeec---cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999999866 666554 356788999996 67899999999999998754
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-30 Score=225.85 Aligned_cols=255 Identities=17% Similarity=0.321 Sum_probs=210.9
Q ss_pred CCCcceE---EEEeC-CCCCEEEEeeCCCcEEEEEcCC--Cc----eeeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648 9 DYNGRIS---SMDFH-KSSSYLVTASDDESIRLYDVTA--AT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 9 ~h~~~V~---~i~~s-~~~~~l~t~s~D~~v~iWd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
+|...|. ++..+ |.+++|.|||.||.||+|++.. ++ ++..++.|..+|..++...+++.++++|+ |-
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss---Dt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS---DT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC---Cc
Confidence 3455565 45555 5677899999999999999863 22 47788999999999998889989998876 88
Q ss_pred eeEEEEccCC--ceEEEeeecccCEEEEEe-cCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648 79 SLRLLSLHDN--KYLRYFKGHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 155 (309)
Q Consensus 79 ~i~~~d~~~~--~~~~~~~~h~~~v~~v~~-~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
+|++|+.+.+ -++.++..|.+.|.++++ .++...+||||.|+.|.+||+.++....+-....
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~--------------- 160 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN--------------- 160 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc---------------
Confidence 9999999877 578889999999999999 6777899999999999999998763200000000
Q ss_pred EECCEEEEEECCCCCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 156 AFGGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 156 ~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
.....+. |+...+.+++.++.|..+++|+.++.+++||.++++.+..+. +|...|..+
T Consensus 161 ------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~l 219 (735)
T KOG0308|consen 161 ------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVL 219 (735)
T ss_pred ------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEE
Confidence 0001111 455678899999999999999999999999999998887776 467788889
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 302 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~ 302 (309)
..++||+.++|+|.||+|++||+.-.+++.++..|...+.++.-+|+-..+.+|+.|..+...+|...
T Consensus 220 l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999988888887764
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=212.51 Aligned_cols=248 Identities=19% Similarity=0.301 Sum_probs=205.4
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+.++|......|.+++|-.||++||.|...|.|+|+|..+...++.+..|+.++..+-|+|..+.++++.+ -|..+++
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s--Dd~v~k~ 137 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS--DDKVVKY 137 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC--CCceEEE
Confidence 45667778899999999999999999999999999997776678999999999999999998888776643 3789999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCc-eeeeeeeec-CceeEEECCCCcEEEEEECC
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLLRVQ-GRPAAAYDDQGLVFAVAFGG 159 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (309)
||+.+...+..+.+|++.|++.+++|... .++|||.||+||+||.++. ..+..+... ......+-+++.+++.+.++
T Consensus 138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 99998887668999999999999999644 8999999999999999876 333333322 23346777888899999999
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
.+++||+....+ .+.....|...|+|+++..+++.|++++.|++|++||..+-+.++.... .+++.+++.+|+
T Consensus 218 ~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLsiavs~d 290 (487)
T KOG0310|consen 218 SVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLSIAVSPD 290 (487)
T ss_pred eEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----ccceeeEEecCC
Confidence 999999875332 1222333667899999999999999999999999999877777777653 478999999999
Q ss_pred CCEEEEEcCCCcEEEEECCC
Q 021648 240 GMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~ 259 (309)
++.++.|-.||.+.+=+...
T Consensus 291 d~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred CceEEEecccceeeeehhhc
Confidence 99999999999887765433
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=211.39 Aligned_cols=245 Identities=22% Similarity=0.342 Sum_probs=198.0
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
++..+|.|-.++|++++|.++++.+++++.|+.+++|++++....+++.+|...|+.+.|......+++++ .|.+++
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs---~DRtiK 286 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGS---ADRTIK 286 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeecc---ccchhh
Confidence 46678888889999999999999999999999999999999999999999999999999988776666665 399999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCC-cEEEEEECC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQG-LVFAVAFGG 159 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 159 (309)
+||+....+.+++- -...+..|... ...++|+-.|++||+||.++..+.....+.+.. +.....++ .+++++.|+
T Consensus 287 ~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence 99999887766543 22334455444 457899999999999999999887777766543 34444554 577777899
Q ss_pred EEEEEECCCCCcCCceEEEeCCC--CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s 237 (309)
.+.+.|+|+++. ...+...+- .++.+.+.|||++.|+++|+.||.|+||+..++++...+.... ....+.+++|+
T Consensus 364 tl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~aI~s~~W~ 440 (459)
T KOG0288|consen 364 TLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNAAITSLSWN 440 (459)
T ss_pred ceeeeecccccE--EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCcceEEEEEc
Confidence 999999997642 233333322 2468889999999999999999999999999999887765432 22368899999
Q ss_pred CCCCEEEEEcCCCcEEEE
Q 021648 238 PEGMFVISGSGDGSVYAW 255 (309)
Q Consensus 238 p~g~~l~s~s~Dg~i~vw 255 (309)
|.|.++++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=8.4e-29 Score=196.34 Aligned_cols=240 Identities=21% Similarity=0.329 Sum_probs=198.0
Q ss_pred eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE--EeeecccCEEEEEecC-CCCeEEEecCCCcEE
Q 021648 47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCS-SKDCFISGSLDRTVL 123 (309)
Q Consensus 47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~--~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~ 123 (309)
+.+.+|...+..++|..+|.++++++. |+++++|+++....++ ...+|.+.|-.++|.| +...|++++.|++|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~---dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSF---DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeeccc---CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 556778888999999999999998876 8899999998775443 4578999999999987 466899999999999
Q ss_pred EeeCCCceeeeeeeecC-ceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648 124 LWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT 201 (309)
Q Consensus 124 ~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~ 201 (309)
+||++++++...+...+ .....+.|++.+++.+ .|..|...|.|+++... .......++.++++.++.++...
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-----~~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN-----EEQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee-----hhcccceeeeeeecCCCCEEEEe
Confidence 99999999987765543 4456777777666555 68899999998754311 11122346778899999999999
Q ss_pred eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 202 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 202 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
...|+|.|.....-+.+.++.. |...+.++.|+|+|+|+|+||+|..+.+||+...-+++.++.+.=+|..|+||.|
T Consensus 166 ~GlG~v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred cCCceEEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 9999999988777677766664 4567788999999999999999999999999998889999999999999999999
Q ss_pred eeEEEEccceEEEeee
Q 021648 282 SLMFVTGSSELSFWIP 297 (309)
Q Consensus 282 ~~~l~s~~~d~~~~~~ 297 (309)
|++|++|++|..+-+.
T Consensus 243 g~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIA 258 (313)
T ss_pred cceeeccCccceEEeE
Confidence 9999999999666443
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7e-30 Score=208.30 Aligned_cols=242 Identities=20% Similarity=0.370 Sum_probs=202.3
Q ss_pred EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
.|..|..+|.|++|+-|...||||+.||.|++|-+.+|.|++.|. .|..+|+++.|+.|+..+++++. |.++|+.-
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHG 334 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHG 334 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceEEEec
Confidence 356789999999999999999999999999999999999999997 78899999999999999998764 99999999
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc----eeEEE--CCCCcEEEEEEC
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAY--DDQGLVFAVAFG 158 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~ 158 (309)
+++|++++.++||...|+...|.+||..++|+|.||+|++|+.++..|..+++..+. ..... .++..++.+-..
T Consensus 335 lKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 335 LKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred cccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 999999999999999999999999999999999999999999999999887764331 22222 234456666677
Q ss_pred CEEEEEECCCCCcCCceEEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s 237 (309)
+++.+.++... ...-++.+. +..+..+++.||.|.++-+.+.|+.++-|...+|.+..++.. |...++.++-+
T Consensus 415 ntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V---hEkdvIGl~HH 488 (508)
T KOG0275|consen 415 NTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV---HEKDVIGLTHH 488 (508)
T ss_pred CeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec---ccccccccccC
Confidence 88888876421 111122111 123556778999999999999999999999999998887764 55667788999
Q ss_pred CCCCEEEEEcCCCcEEEEE
Q 021648 238 PEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 238 p~g~~l~s~s~Dg~i~vwd 256 (309)
|..+.+|+=++||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999995
No 78
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=209.28 Aligned_cols=284 Identities=17% Similarity=0.276 Sum_probs=214.3
Q ss_pred ceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 4 GMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+-.|.||...|.+++=+|.. ..+||||.||.|+|||+.+.+|+.++..|...|..+++.. +.+++++ .|.+|++
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg---dDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG---DDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec---CCcceee
Confidence 44678999999999999977 6799999999999999999999999999999999999987 5566654 3899999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEE-EEEC
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFA-VAFG 158 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~-~~~~ 158 (309)
|-++. ..++++.+ ...+..++-+..++.|+|+|. .|.|||.+-..++..+.-.. ..++.+.+-. .+++ ++.|
T Consensus 134 wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 134 WKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 99866 35555543 345667777777788999986 57899987666655544332 2344555432 3444 4589
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
+.|.+||+|... ++.-..+.. .-+.++++|++..++++..|..++.||++.- ......+-.|.+.+.+++|||
T Consensus 210 rsIvLyD~R~~~--Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 210 RSIVLYDLRQAS--PLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred CceEEEecccCC--ccceeeeec---cccceecCccccceeeccccccceehhhhhh--cccchhhcccceeEEEeccCC
Confidence 999999999754 333222222 3467899999999999999999999998652 223334445778899999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEeecCC---CCCcEEEECCCeeEEEEccce--EEEeee-cCCCcccc
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAY 305 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~s~~~d--~~~~~~-~~~~~~~~ 305 (309)
-|+.++|||.|.+|+||.+..+..-.. .|+ ..|.++.||-|.+++++||.| +++|-. .-.+||.+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred CcchhccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 999999999999999999977643221 122 468999999999999999998 666743 33355543
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=206.99 Aligned_cols=272 Identities=20% Similarity=0.253 Sum_probs=213.6
Q ss_pred CcceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 11 NGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
.++|++++|+|...+ +|+++ --.+.||+..+...++++...+..+..++|..||..++++.. .+.|+++|+++..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC---cCcEEEeccccHH
Confidence 468999999996644 44443 368999999988888989888888999999999988877643 6789999987777
Q ss_pred eEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEEC--CCCcEEEEEECCEEEEE
Q 021648 90 YLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYD--DQGLVFAVAFGGYIRMF 164 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~i~~~ 164 (309)
.++.+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+...+..+..+.. -+.... .+..++++++||.|++|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 888999999999999999964 5789999999999999987765333332221 122222 33457778899999999
Q ss_pred ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648 165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 244 (309)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 244 (309)
|+|..... +..+ .|..+|..+.+-|.|..+++++. ..|++||+.+|..+-... ..|...|.++++..+++.|+
T Consensus 182 DtR~~~~~---v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLTSR---VVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCCce---eEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhh--hcccceEEEEEeecCCceEe
Confidence 99976422 2222 24467889999999999888764 478999998766553222 13677899999999999999
Q ss_pred EEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 245 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 245 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
|||.|+.++|||+.+.+.+..+ .++++|.+++.+|+++.++.|-++.-+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred ecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEeccccee
Confidence 9999999999999888777776 578899999999999999998887433
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=9e-28 Score=214.29 Aligned_cols=286 Identities=18% Similarity=0.295 Sum_probs=222.8
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+++.+|.||+.+|+++.|+..|.+|||||.|+.|.+||+-.-+-+..+++|+..++..-|......+++++. |..++
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK---Ds~iK 174 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK---DSMIK 174 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc---CceEE
Confidence 467789999999999999999999999999999999999877778899999999988888776667777765 88999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-------eeeee-----eeec--Cc-eeEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-------KCQGL-----LRVQ--GR-PAAAY 146 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-------~~~~~-----~~~~--~~-~~~~~ 146 (309)
+||+++..+..+.-.|.+.|+++++.+ +.+++++.|+.+++|++..+ +...+ +.-+ ++ ...+.
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~ 252 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT 252 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee
Confidence 999999999999999999999999987 78999999999999997110 00000 0000 00 00011
Q ss_pred CCCC----------------------------------------------------------------------------
Q 021648 147 DDQG---------------------------------------------------------------------------- 150 (309)
Q Consensus 147 ~~~~---------------------------------------------------------------------------- 150 (309)
+.++
T Consensus 253 d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~ 332 (888)
T KOG0306|consen 253 DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG 332 (888)
T ss_pred cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC
Confidence 1111
Q ss_pred ---cEEEEEECCEEEEEECCCCC-c----CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648 151 ---LVFAVAFGGYIRMFDARKYE-K----GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 222 (309)
Q Consensus 151 ---~~~~~~~~~~i~~~d~~~~~-~----~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~ 222 (309)
..+..-.++.+..|.+.... . .....+...+|.++|+++++|.|...++++ ..+.+.+|+..+..++.++.
T Consensus 333 ~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 333 GTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred CcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEec
Confidence 11112234555555544311 0 112235677889999999999988766554 57789999999999998875
Q ss_pred ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648 223 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 298 (309)
Q Consensus 223 ~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~ 298 (309)
. +.+.+..|-|.++++++|...|.+.++|+.+...+.+..+|.+.+..++.+||++.+++||.| +++|.-.
T Consensus 412 ~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 412 C-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred c-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 3 466788999999999999999999999999999999999999999999999999999999998 6666443
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=181.23 Aligned_cols=248 Identities=19% Similarity=0.362 Sum_probs=196.0
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-----eeeeccccceeEEEEecCCC---EEEEEcCCCCCce
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDES 79 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~ 79 (309)
+.|.+.|.|++|+|+|.++||||.|++|++--++...|. -++.-|...+..+||-.+++ .++.+...| |..
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-dc~ 164 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-DCK 164 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-cce
Confidence 569999999999999999999999999999866544442 24667788899999976554 344433233 888
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 159 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (309)
|.+-|-.+|+....+.||++.|.++- +=++-.|++||.|++||+||++-+.++.++....+
T Consensus 165 iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------------------ 225 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------------------ 225 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCccc------------------
Confidence 88889999999999999999999863 33577999999999999999987766554421110
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
.+ +-+.+.+.+++..|.|++|++|-.|....+||++-+..++.|.. |...+.++.|||.
T Consensus 226 -----------~~-------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p---hsadir~vrfsp~ 284 (350)
T KOG0641|consen 226 -----------DG-------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---HSADIRCVRFSPG 284 (350)
T ss_pred -----------CC-------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC---CccceeEEEeCCC
Confidence 00 01224578899999999999999999999999999999987753 4567889999999
Q ss_pred CCEEEEEcCCCcEEEEECCCC----ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEee
Q 021648 240 GMFVISGSGDGSVYAWSVRSG----KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 296 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~ 296 (309)
..|++++|.|..|++=|+... -++.....|...+..+.|+|..-.|++.+.| ..+|-
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999999999999998642 1223334688888999999999999998887 55553
No 82
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=8.5e-27 Score=212.85 Aligned_cols=224 Identities=13% Similarity=0.216 Sum_probs=168.3
Q ss_pred EeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC-CCEEEEEcCCCCCceeEEEEccCCc--------eEEEeeecc
Q 021648 28 TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YLRYFKGHH 98 (309)
Q Consensus 28 t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~i~~~d~~~~~--------~~~~~~~h~ 98 (309)
+|+.++.+++|+......+..+.+|...|..++|+|+ +..+++++. |++|++||+.++. .+..+.+|.
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCC
Confidence 3667899999998887888899999999999999997 567776654 8999999997532 345688999
Q ss_pred cCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEE
Q 021648 99 DRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 177 (309)
Q Consensus 99 ~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 177 (309)
..|.+++|+|++.. |+|++.|++|++||+++++....+.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------------------------- 165 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---------------------------------------- 165 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----------------------------------------
Confidence 99999999998875 5799999999999998764321110
Q ss_pred EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC--CccceEEECCCCCEEEEEcCCC----c
Q 021648 178 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDG----S 251 (309)
Q Consensus 178 ~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~sp~g~~l~s~s~Dg----~ 251 (309)
+...+.+++|+|+|.+|++++.|+.|++||+++++.+.++..+.... ..++...|+|++++|+|+|.|+ +
T Consensus 166 ----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~ 241 (568)
T PTZ00420 166 ----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE 241 (568)
T ss_pred ----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence 01236789999999999999999999999999999888776433211 1123345779999999988875 7
Q ss_pred EEEEECCC-CceEEEeecCC--CCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648 252 VYAWSVRS-GKEVASWMSFD--TEPPVIKWTPGSLMFVTGSSE--LSFWIPD 298 (309)
Q Consensus 252 i~vwd~~~-~~~~~~~~~~~--~~v~~l~~~p~~~~l~s~~~d--~~~~~~~ 298 (309)
|+|||+++ .+++..+..+. +.+.-....+++.++++|+.| +++|...
T Consensus 242 VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 242 MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 99999985 55565543333 222223334568899999887 6666553
No 83
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.6e-27 Score=211.87 Aligned_cols=241 Identities=14% Similarity=0.198 Sum_probs=180.8
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-------------eeeeccccceeEEEEec-CCCEEEEEcCCCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGW 76 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~ 76 (309)
-..|.....++++..+++++.+..+..|+...+..+ ..+.+|...|..++|+| ++..+++++.
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~--- 96 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE--- 96 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---
Confidence 345666667788788889999988899987544322 13678888999999999 6777777754
Q ss_pred CceeEEEEccCC-------ceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648 77 DESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 148 (309)
Q Consensus 77 d~~i~~~d~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~ 148 (309)
|++|++||+.++ +.+..+.+|...|.+++|+|++ +.|+|++.|++|++||+++++....
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~------------- 163 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV------------- 163 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE-------------
Confidence 899999999764 3567889999999999999975 6999999999999999976543211
Q ss_pred CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648 149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228 (309)
Q Consensus 149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 228 (309)
+.++...+.+++|+|+|.+|++++.|++|++||+++++.+.++..+. .
T Consensus 164 ------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~--~ 211 (493)
T PTZ00421 164 ------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--S 211 (493)
T ss_pred ------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC--C
Confidence 11233467889999999999999999999999999998887765332 1
Q ss_pred CccceEEECCCCCEEEEEc----CCCcEEEEECCCCc-eEEEeecC-CCCCcEEEECCCeeEEEEccc-eEEEeeecC
Q 021648 229 NSTLEASFSPEGMFVISGS----GDGSVYAWSVRSGK-EVASWMSF-DTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL 299 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s----~Dg~i~vwd~~~~~-~~~~~~~~-~~~v~~l~~~p~~~~l~s~~~-d~~~~~~~~ 299 (309)
.....+.|.|++..+++++ .|+.|++||+++.. ++.....+ ...+....|+|+++++++++. |..+..|++
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 2234678999988888765 47899999998754 33333323 234555679999998888774 644444443
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.3e-27 Score=200.30 Aligned_cols=277 Identities=17% Similarity=0.185 Sum_probs=211.9
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee----e-------------e-eccccceeEEEEecCCC
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK----T-------------I-NSKKYGVDLVCFTSHPT 66 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~~ 66 (309)
.....|.-+|.++.++|++++..+++.|++|.=|++.+|+..+ . - ..|...+.+++.++++.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4567899999999999999999999999999999998887431 1 1 14555678999999999
Q ss_pred EEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeE
Q 021648 67 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAA 144 (309)
Q Consensus 67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~ 144 (309)
+++++ |.|..|.+|+..+.+.++++++|.+.|.+++|-.....+.++|.|+++++|++.....+.++-.+.. ...
T Consensus 216 ylatg---g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 YLATG---GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EEEec---CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99976 4589999999999999999999999999999998888999999999999999876544433311111 112
Q ss_pred EECCCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 145 AYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 145 ~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
........++++ .|.++++|++....+ +...++...+-|++|=.+. .+++|++||.|.+|++.+.+++.+...
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesq-----lifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQ-----LIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred chhcccceEEeccccceeEEEeccccce-----eeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeec
Confidence 222344566655 799999999843221 2222344567788876544 578999999999999998888876653
Q ss_pred c-CCCCC--------ccceEEECCCCCEEEEEcCCCcEEEEECCCCc----eEEEeecCCCCCcEEEECCCeeEEE-Ecc
Q 021648 224 K-PVSRN--------STLEASFSPEGMFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFV-TGS 289 (309)
Q Consensus 224 ~-~~~~~--------~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~-s~~ 289 (309)
. +.... .+.+++..|....+|+||.+|+|++|-+.++- ++..++ ..+.|++|+|+++|+.++ ..+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 2 11111 57789999999999999999999999999873 344444 678999999999998554 444
Q ss_pred ce
Q 021648 290 SE 291 (309)
Q Consensus 290 ~d 291 (309)
.+
T Consensus 446 kE 447 (479)
T KOG0299|consen 446 KE 447 (479)
T ss_pred cc
Confidence 44
No 85
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=187.49 Aligned_cols=238 Identities=15% Similarity=0.267 Sum_probs=183.3
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
.+|+..|.+++|+|.|++||+||.|.++-||.-. +-+|+.++++|...|.+++|+++|.++++++. |..|=+|.+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR---DKSVWiWe~ 134 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR---DKSVWIWEI 134 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC---CCeEEEEEe
Confidence 3799999999999999999999999999999655 34789999999999999999999999999986 889999988
Q ss_pred cCC---ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC-Cce--eeeeeeecC--ceeEEECCCC-cEEEEE
Q 021648 86 HDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEK--CQGLLRVQG--RPAAAYDDQG-LVFAVA 156 (309)
Q Consensus 86 ~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~--~~~~~~~~~--~~~~~~~~~~-~~~~~~ 156 (309)
..+ ++..+++.|...|..|.|+|....|+|+|.|.+|++|.-. ... +..++.... .-...|++.+ ++.++.
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 644 3678899999999999999999999999999999999865 332 222332222 2245677877 455666
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe----eecCCCCCccc
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVKPVSRNSTL 232 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~~~~~~ 232 (309)
.|++++||-....-. ..+...+..+.+. ...|++++.|+.|++|.......-..+ .....|...|.
T Consensus 215 dD~tv~Iw~~~~~~~--------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 215 DDGTVSIWRLYTDLS--------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred CCcceEeeeeccCcc--------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 789999997442110 0122345666776 457899999999999975532111111 12234556788
Q ss_pred eEEECCC-CCEEEEEcCCCcEEEEECC
Q 021648 233 EASFSPE-GMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 233 ~~~~sp~-g~~l~s~s~Dg~i~vwd~~ 258 (309)
.+.|+|. .+.|++||.||.|++|.+.
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999995 7899999999999999874
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-27 Score=209.86 Aligned_cols=241 Identities=16% Similarity=0.255 Sum_probs=199.3
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
+.+.-+...|+++.|+++|.+||.|-.+|+|.|||..+.+.++.+.+ |...|.++++. +..+.+++ .|+.|..+
T Consensus 211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs---r~~~I~~~ 285 (484)
T KOG0305|consen 211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS---RDGKILNH 285 (484)
T ss_pred EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec---CCCcEEEE
Confidence 34444588999999999999999999999999999999999999998 88889988887 33444444 38899999
Q ss_pred EccCCceEEE-eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648 84 SLHDNKYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 162 (309)
Q Consensus 84 d~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (309)
|+...+.... +++|...|-.+.|++|+++|++|+.|+.+.+||.....+.
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~----------------------------- 336 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK----------------------------- 336 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc-----------------------------
Confidence 9988765444 8999999999999999999999999999999997333221
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEe--CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
+.+..|...|.+++++|-. .+||+|+ .|++|++||..++..+..... ...|..+.|+|.
T Consensus 337 --------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 337 --------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSKK 398 (484)
T ss_pred --------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcCC
Confidence 1222345667888999954 5666654 699999999999999887653 346788999999
Q ss_pred CCEEEEE--cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeee
Q 021648 240 GMFVISG--SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 297 (309)
Q Consensus 240 g~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~ 297 (309)
.+.|+++ -.+..|.||+..+.+++..+.+|+..|..++++||+..+++|+.| ++||..
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 9888877 345689999999999999999999999999999999999999988 777743
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7e-28 Score=190.47 Aligned_cols=274 Identities=20% Similarity=0.292 Sum_probs=200.0
Q ss_pred EEEEeCC--CCCE-EEEee-----CCCcEEEEEcCCCceeeeeec--cccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 15 SSMDFHK--SSSY-LVTAS-----DDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 15 ~~i~~s~--~~~~-l~t~s-----~D~~v~iWd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
.++.||| ++++ +||+. ..|++-|-|+..+.-++.... -+.....+++++..+.++.++. | |+++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~-G-DGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS-G-DGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe-c-CceEEEec
Confidence 4788998 3443 33433 367888888865555555443 2345778999997776555543 3 99999999
Q ss_pred ccC-CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECC--CCcEEEEEEC
Q 021648 85 LHD-NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD--QGLVFAVAFG 158 (309)
Q Consensus 85 ~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~ 158 (309)
+.. ..++..++.|+.+|.++.|++- .+.++++|+|++|++||+.-++.+.+++.+... .+.++| ++.+.+++.|
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 643 5689999999999999999984 557889999999999998776666555432211 123333 4456666779
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCC-eEeEEeeecCCCCCccceEEE
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (309)
+.+++||+|.. ++... +..|...+.++.++. +...+++++.|+.|++||+++- ..+.++. .|.-.|..+.|
T Consensus 170 ~~l~lwdvr~~--gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~ 242 (311)
T KOG0277|consen 170 GTLRLWDVRSP--GKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKF 242 (311)
T ss_pred ceEEEEEecCC--CceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec---CCceEEEEEec
Confidence 99999998853 33333 344556788888876 5678889999999999999763 3344433 46667889999
Q ss_pred CCC-CCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcEEEECC-CeeEEEEccce--EEEeee
Q 021648 237 SPE-GMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP 297 (309)
Q Consensus 237 sp~-g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~p-~~~~l~s~~~d--~~~~~~ 297 (309)
||. ...|||+|.|-+++|||...+.. +++...|+..+-.+.||+ +..++++.+-| +++|.|
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 996 57899999999999999986543 556678888888899999 56799999988 555554
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-25 Score=177.41 Aligned_cols=236 Identities=15% Similarity=0.222 Sum_probs=193.4
Q ss_pred eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648 49 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 128 (309)
Q Consensus 49 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~ 128 (309)
+.+|.-+++.+-+..+|..+++++. |.+..||--.+|+.+.++.||++.|++++..-+.+.++||+.|.++++||.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaK---D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAK---DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccCccccceEEecCCCcEEEEecC---CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 5678889999999999999998876 8899999988999999999999999999999999999999999999999999
Q ss_pred CceeeeeeeecC-ceeEEECCCCcEEEEEEC------CEEEEEECCCCCc---CCceEEEeCCCCCCCeEEEEccCCCEE
Q 021648 129 AEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG------GYIRMFDARKYEK---GPFDIFSVGGDISDANVVKFSNDGRLM 198 (309)
Q Consensus 129 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~v~~s~dg~~l 198 (309)
++++...+..+. ...+.++.++.++....| +.|.++|++.... ..-+.+.+..+.+.++..-++|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 999887776543 234566677766665543 6899999885321 111133333344678888999999999
Q ss_pred EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648 199 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 278 (309)
Q Consensus 199 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 278 (309)
++|..||.|.+||+++|..+.... ..|...+.++.|+||..+++|+|.|.+.++||..+.+.++++.. ..++++.++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aai 239 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAI 239 (327)
T ss_pred EEecCCCcEEEEEcccCceeeech--hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceec
Confidence 999999999999999986554322 24556788999999999999999999999999999998988865 458999999
Q ss_pred CCCeeEEEEccc
Q 021648 279 TPGSLMFVTGSS 290 (309)
Q Consensus 279 ~p~~~~l~s~~~ 290 (309)
+|....++-|+.
T Consensus 240 sP~~d~VilgGG 251 (327)
T KOG0643|consen 240 SPLLDHVILGGG 251 (327)
T ss_pred ccccceEEecCC
Confidence 998777766653
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.3e-26 Score=210.08 Aligned_cols=294 Identities=17% Similarity=0.244 Sum_probs=217.9
Q ss_pred ecCCCc-ceEEEEeCCCCCEEEEee--CCCcEEEEEcCC------------CceeeeeeccccceeEEEEecCCCEEEEE
Q 021648 7 FRDYNG-RISSMDFHKSSSYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYS 71 (309)
Q Consensus 7 ~~~h~~-~V~~i~~s~~~~~l~t~s--~D~~v~iWd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 71 (309)
+.+|.+ .|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.+...|...|.++-|++||.+++++
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 345554 799999999999999999 999999998642 12344567788889999999999999998
Q ss_pred cCCCCCceeEEEEccC-------C-----------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648 72 SKNGWDESLRLLSLHD-------N-----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133 (309)
Q Consensus 72 s~~g~d~~i~~~d~~~-------~-----------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~ 133 (309)
+. |+.|-+|.... + +++..+.+|...|..++|+|++.+|+|+|.|++|.+|+.++-++.
T Consensus 88 SD---D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 88 SD---DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred cC---cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 75 78899998772 1 157789999999999999999999999999999999999888766
Q ss_pred eeeeecC--ceeEEECCCCcEEEEE-ECCEEEEEECCCCCcC--CceEEEeCCCCCCCeEEEEccCCCEEEEEe-CC---
Q 021648 134 GLLRVQG--RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKG--PFDIFSVGGDISDANVVKFSNDGRLMLLTT-ME--- 204 (309)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-~d--- 204 (309)
.+++.+. .....++|.++++|+- .|++|++|++...... ...-+...+-..-...+.+||||++|++.- .+
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 6665432 3457889999988875 5789999996542210 000011011112345678999999998753 23
Q ss_pred CcEEEEECCCCeEeEEeeecCCCCCccceEEECC-----CCC------------EEEEEcCCCcEEEEECCCCceEEEee
Q 021648 205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-----EGM------------FVISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-----~g~------------~l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
..+.|.+..+-+.-..+- +|..++..+.|+| ..+ .+|+||.|++|.||.....+++....
T Consensus 245 ~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred ceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 367787765544444443 3566788899998 112 67899999999999998888765432
Q ss_pred -cCCCCCcEEEECCCeeEEEEccceEEE--eeecCCCccccc
Q 021648 268 -SFDTEPPVIKWTPGSLMFVTGSSELSF--WIPDLSKLGAYV 306 (309)
Q Consensus 268 -~~~~~v~~l~~~p~~~~l~s~~~d~~~--~~~~~~~~~~~~ 306 (309)
-.+..|..++|+|||..|...|.|..+ ..-+.+.||+.+
T Consensus 322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~l 363 (942)
T KOG0973|consen 322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVAL 363 (942)
T ss_pred hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCccc
Confidence 345789999999999888777777444 444666666643
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=185.53 Aligned_cols=283 Identities=16% Similarity=0.200 Sum_probs=216.4
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+.+.|.||.+.|..++-.....++.|+|.|.+.+||.+++|.|+.++.+|...|.++.|++.+..++.++. |++.-+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~taHI 216 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DETAHI 216 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---CcchHH
Confidence 56778999999999999888889999999999999999999999999999999999999998888877763 555555
Q ss_pred EEcc------C----------------------------------CceEEEeeecccCEEEEEecCCCCeEEEecCCCcE
Q 021648 83 LSLH------D----------------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTV 122 (309)
Q Consensus 83 ~d~~------~----------------------------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v 122 (309)
|-.. . ..++..+.||.+.|.+..|...++.++|+|+|++.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 5410 0 01356789999999999999999999999999999
Q ss_pred EEeeCCCceeeeeeeecCc--eeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEE
Q 021648 123 LLWDQRAEKCQGLLRVQGR--PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 199 (309)
Q Consensus 123 ~~Wd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~ 199 (309)
.+||.+++.++..+..+.. .-++..|. ..+++.+.|-+-++||.|. ..+ .+.-..||...+.++.|..|.+ ++
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~--sV~VFQGHtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQ--SVAVFQGHTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-hcc--eeeeecccccceeEEEEecCCc-ee
Confidence 9999999988766643321 12233343 3456666789999999883 112 2334567888999999987655 68
Q ss_pred EEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-----ecCCCCC
Q 021648 200 LTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-----MSFDTEP 273 (309)
Q Consensus 200 ~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-----~~~~~~v 273 (309)
+++.|.+|++||++. ...+.++.. ..++..++.+..+..||.--+...|++||+. |..+.-+ .+|..-|
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceee
Confidence 999999999999876 345555543 2456678888888899999999999999995 4554444 3688889
Q ss_pred cEEEECCCe--eEEEEccceEEEeee
Q 021648 274 PVIKWTPGS--LMFVTGSSELSFWIP 297 (309)
Q Consensus 274 ~~l~~~p~~--~~l~s~~~d~~~~~~ 297 (309)
.|++|...- .-|.+++-|..+.-|
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eeeeccccCcccccccccccceeeee
Confidence 999996542 334455566444333
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=6.4e-24 Score=183.00 Aligned_cols=267 Identities=12% Similarity=0.159 Sum_probs=190.2
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 102 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~ 102 (309)
++.++|++.|+++++||..++++++.+..+.. +..++|++++..++++. +.++.+++||+.+++.+..+..+.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCA--SDSDTIQVIDLATGEVIGTLPSGPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence 35789999999999999999999888876543 56789999998775543 2378999999999888777765544 56
Q ss_pred EEEecCCCCeEE-EecCCCcEEEeeCCCceeeeeeeecC-ceeEEECCCCcEEEEEEC--CEEEEEECCCCCcCCceEEE
Q 021648 103 SLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG--GYIRMFDARKYEKGPFDIFS 178 (309)
Q Consensus 103 ~v~~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~ 178 (309)
.+.++|+++.++ +++.|+.+++||+++.+....+.... .....+.+++.+++.+.. ..+..||.+..+. .....
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE
Confidence 788999998664 55678999999998877665554322 234567777776666543 3577788764321 11111
Q ss_pred eCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeecC--CC--CCccceEEECCCCCEEEEE-cCCCcE
Q 021648 179 VGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKP--VS--RNSTLEASFSPEGMFVISG-SGDGSV 252 (309)
Q Consensus 179 ~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~--~~--~~~~~~~~~sp~g~~l~s~-s~Dg~i 252 (309)
.......++|+|+|+.++.+ ..++.|++||+.+++.+..+.... .+ ......++|+|+|++++.+ +.++.+
T Consensus 155 ---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 155 ---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred ---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 11234678999999988655 468999999999988776554221 11 1123468899999986554 567789
Q ss_pred EEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEcc-ce--EEEeeecC
Q 021648 253 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SE--LSFWIPDL 299 (309)
Q Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~-~d--~~~~~~~~ 299 (309)
.+||+.+++.+..+. +...+.+++|+|+++.|+++. .+ +.+|..+-
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 999999887766543 445789999999999887753 33 66665543
No 92
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.5e-28 Score=215.43 Aligned_cols=238 Identities=19% Similarity=0.370 Sum_probs=208.4
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
+.+..|+..|.++..-..++.+++|+.|..+-+|.+....++..+.+|..+|.++.|......+..++. +++||+||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeee
Confidence 456789999999998778899999999999999999888888889999999999999987776666654 78999999
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF 164 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (309)
++..+.++++.||...+..|.|+|-+.++++++.|..+++||.+...|...+.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--------------------------- 151 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--------------------------- 151 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec---------------------------
Confidence 99999999999999999999999999999999999999999987554432221
Q ss_pred ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEE
Q 021648 165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 244 (309)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 244 (309)
++..-+.++.|+|+|++++.++.|..++|||...|+++.+|.. |...+..+.|+|..-.++
T Consensus 152 ----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 152 ----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLA 212 (825)
T ss_pred ----------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc---ccccccccccCchhhhhc
Confidence 1223467889999999999999999999999999999988874 445677788999999999
Q ss_pred EEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 245 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 245 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
+||.|+++++||+++-+.+.........|.+++|+|+++.+.+|..+
T Consensus 213 ~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999999999999888887777778889999999999999999875
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.1e-26 Score=194.43 Aligned_cols=239 Identities=19% Similarity=0.293 Sum_probs=189.1
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 87 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~ 87 (309)
++|.+.|.+++.+|||+|||||+.|+.|.|||.++++.++.+.+|...|..++|......+++++. |..+++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~---Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA---DRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec---CCceEEEehhH
Confidence 489999999999999999999999999999999999999999999999999999998888888764 99999999999
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCCcEEEEEECCEEEEEE
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFD 165 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d 165 (309)
..++.++-||++.|.+++...-.+.+-.|+.|+++++|++.... ...++.. ...++++-++..+++++.+|.|.+|+
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 99999999999999999988877777777799999999984332 2222222 12356777888899999999999999
Q ss_pred CCCCCcCCceEEEeCC---------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe----EeEEeeecCCCCCccc
Q 021648 166 ARKYEKGPFDIFSVGG---------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTL 232 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~---------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~ 232 (309)
+.+.+. -+.....++ ....+++++..|...++++|+-+|.|++|-+..+- ++..+. ..+.|.
T Consensus 355 ~~KKkp-lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls----~~GfVN 429 (479)
T KOG0299|consen 355 LLKKKP-LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS----LVGFVN 429 (479)
T ss_pred ecccCc-eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----cccEEE
Confidence 875431 111111111 11267899999999999999999999999987762 232222 346788
Q ss_pred eEEECCCCCEEEEE-cCCCcEEEE
Q 021648 233 EASFSPEGMFVISG-SGDGSVYAW 255 (309)
Q Consensus 233 ~~~~sp~g~~l~s~-s~Dg~i~vw 255 (309)
.++|+++|+++++| +..-.+--|
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEccCCCEEEEeccccccccee
Confidence 89999999977776 444444334
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-25 Score=208.58 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=197.8
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-------C-----------ceeeeeeccccceeEEEEecC
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-------A-----------TCLKTINSKKYGVDLVCFTSH 64 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~ 64 (309)
.+-++..|.+.|+|+.|+|||++||+||.|+-|.||+-.. | ++...+.+|...|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3556789999999999999999999999999999998762 1 255678899999999999999
Q ss_pred CCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---
Q 021648 65 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--- 141 (309)
Q Consensus 65 ~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--- 141 (309)
+..+++++ .|++|-+||..+.+.++++.+|+..|.++.|.|-|++|+|-+.|++|++|...+=.+.+.+..+..
T Consensus 141 ~~~lvS~s---~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 141 DSLLVSVS---LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred ccEEEEec---ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 98888876 499999999999999999999999999999999999999999999999998655344444432211
Q ss_pred -----eeEEECCCCcEEEEEE--C---CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-----CC----------
Q 021648 142 -----PAAAYDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GR---------- 196 (309)
Q Consensus 142 -----~~~~~~~~~~~~~~~~--~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-----g~---------- 196 (309)
.-...+|+|.++++.. . ..+.|.+-...+ ....+-||..++.++.|+|- ..
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCce----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 1235578998888763 1 366776533221 12345578889999999871 11
Q ss_pred --EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648 197 --LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 197 --~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
.+|+|+.|+.+.||......++. ..+......|.+++|+|||..|+.+|.||+|.+...+..+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~--vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLF--VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchh--hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 67889999999999975544443 2233456788999999999999999999999999987644
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3e-25 Score=196.77 Aligned_cols=277 Identities=17% Similarity=0.237 Sum_probs=209.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeE-EEEecCCC-EEEEEcCCCCC
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDL-VCFTSHPT-TVIYSSKNGWD 77 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~-~~~~~~~~-~~~~~s~~g~d 77 (309)
++-..+.+|+.-|..+++.+. ..++++|.|+++|+|+-...+- .+.+.++...+.. +|+.+..+ .++.+ +.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g---~~D 80 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG---GMD 80 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee---ccc
Confidence 345678999999999887764 4889999999999998654333 2456666665555 77775333 35544 469
Q ss_pred ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCCCcEEEE
Q 021648 78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAV 155 (309)
Q Consensus 78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 155 (309)
.++.+|.+.+.+++.+++||+..|-+++...++. ++|||+|.++++|-. +++...+..+... .+..-+...++++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTg 157 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTG 157 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEec
Confidence 9999999999999999999999999998777775 999999999999954 4444333322222 2334466688999
Q ss_pred EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
+.|.+|++|.-.. .+.++.+|...|+.+++=+++. +++++.||.|+.|++ +|+.+.++. .|.+-+.+++
T Consensus 158 saDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis 226 (745)
T KOG0301|consen 158 SADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSIS 226 (745)
T ss_pred cCcceeeeccCCc------hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEEE
Confidence 9999999997422 2446678888999999988766 568999999999998 677776654 4667788888
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecC
Q 021648 236 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 299 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~ 299 (309)
..++++.++|+|+|++++||+.. +++..+..-...+.++.+-++|..++ |++| +++|..+-
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv-g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV-GGSDGRVRVFTVDK 289 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE-eccCceEEEEEecc
Confidence 88899999999999999999997 55555543334788888888887655 5555 67776553
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.2e-23 Score=181.24 Aligned_cols=266 Identities=15% Similarity=0.189 Sum_probs=191.5
Q ss_pred cceEecCCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.+.+..|.. +.++.|+|+++.+ ++++.|+.|++||..+++.+..+..+.. +..++++++++.++++. +.|+.++
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~--~~~~~l~ 98 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIAN--EDDNLVT 98 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEc--CCCCeEE
Confidence 4566665544 6789999999876 6778899999999999888777765433 45678999988776654 2378999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC-cEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEE-EE-E
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFA-VA-F 157 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~ 157 (309)
+||+.+++.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++.+....+..... ....+.+++..+. .+ .
T Consensus 99 ~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 99 VIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred EEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence 999998877776653 33568899999999999888775 467789887766543322222 2345667766543 33 4
Q ss_pred CCEEEEEECCCCCcCCceEEEeCC---C--CCCCeEEEEccCCCEEEE-EeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGG---D--ISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 231 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~---~--~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 231 (309)
++.|++||++..+. ...+.... . ......++++|+++++.. .+.++.+.+||..+++.+..... ...+
T Consensus 178 ~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~ 251 (300)
T TIGR03866 178 GGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----GQRV 251 (300)
T ss_pred CCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe----CCCc
Confidence 78999999876432 11111110 0 112345789999998544 45677899999988887654431 2356
Q ss_pred ceEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648 232 LEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 280 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p 280 (309)
..++|+|+|++|+++ +.++.|++||+.+++.+..+.. ...+..|+++|
T Consensus 252 ~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 252 WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 789999999999886 5699999999999999888864 46778898876
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=185.09 Aligned_cols=246 Identities=17% Similarity=0.263 Sum_probs=199.1
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
++.+|+||+..|..+.|+|+...++++|.|..||||.+....+......|+.+|+.+..+|+++++++++. |++...
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w~F 329 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTWAF 329 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceEEE
Confidence 56789999999999999999999999999999999999988888888999999999999999999999986 788999
Q ss_pred EEccCCceEEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-
Q 021648 83 LSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF- 157 (309)
Q Consensus 83 ~d~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 157 (309)
.|+.++.++..... ..-.+++.+|+|||..|.+|..|+.+++||+.++.....+..+. .....|+..|.+++++.
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 99999887655442 22358999999999999999999999999999887665554432 33567889999888775
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC--eEeEEeeecCCCCCccceEE
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~ 235 (309)
|+.|++||+|+.+ .++.+.+.. ...+.++.|.+.|++++.++.|=+|++++-.+. ..+..+.. +.+....+.
T Consensus 410 d~~V~lwDLRKl~--n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~---~sg~st~v~ 483 (506)
T KOG0289|consen 410 DGSVKLWDLRKLK--NFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD---HSGLSTGVR 483 (506)
T ss_pred CCeEEEEEehhhc--ccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh---cccccceee
Confidence 5669999999765 333344332 236899999999999999998888888874332 23333322 334456789
Q ss_pred ECCCCCEEEEEcCCCcEEEEEC
Q 021648 236 FSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
|....++++++|.|..++++.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 9999999999999999988764
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.8e-26 Score=184.57 Aligned_cols=249 Identities=18% Similarity=0.283 Sum_probs=192.3
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEc------CC--------Cc-------------------------
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV------TA--------AT------------------------- 44 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~------~~--------~~------------------------- 44 (309)
+.++.||.+.|++|+|++.+.+++|+|.|++..||.. .. ++
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 5678999999999999999999999999999999972 11 00
Q ss_pred -eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEE
Q 021648 45 -CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 123 (309)
Q Consensus 45 -~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~ 123 (309)
++..+.+|...|.++.|-..+++++.++ ||.+..+||+++++.+..+.||..+.+.++-+|..+.++|+|.|-+.|
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeee---ccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 1112455666666666667778888765 799999999999999999999999999999999999999999999999
Q ss_pred EeeCCCce-eeeeeeec--CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE
Q 021648 124 LWDQRAEK-CQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL 200 (309)
Q Consensus 124 ~Wd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~ 200 (309)
+||++..- .+.++..+ ......|..+..+++++.|.+|++||++++..+-..+.+ .++++.+++|..+..++.
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEe
Confidence 99998431 11222221 133456677778888888999999999998765433332 256888999999999999
Q ss_pred EeCCCcEEEEECCCCeEeEEee--ecCCCCCccceEEECCC--CCEEEEEcCCCcEEEEECCCC
Q 021648 201 TTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 201 ~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~sp~--g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
--.+.+|++||+. |..+..+. ....|..-+.+++|..+ ---|+++|-|..+.-|++...
T Consensus 416 PhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 416 PHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999999985 33333221 11245566788999754 256889999999999998654
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.5e-25 Score=188.65 Aligned_cols=244 Identities=16% Similarity=0.282 Sum_probs=184.6
Q ss_pred CCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCc--------e--eeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648 9 DYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT--------C--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~--------~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
-|.++|+.++..|+. .++||.+..+.|.|||..+-. | --.+.+|+..-..++|++.....+.++ +.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~--~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG--SDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec--cCC
Confidence 589999999999854 678899999999999986321 1 125778877667789988776544443 238
Q ss_pred ceeEEEEccCCc-------eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCC
Q 021648 78 ESLRLLSLHDNK-------YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 149 (309)
Q Consensus 78 ~~i~~~d~~~~~-------~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~ 149 (309)
++|++||+.... .+..+.+|.+.|..++|++- ...|++++.|+.+.|||.|++... . .
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~---~---------- 265 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-P---S---------- 265 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-C---c----------
Confidence 999999986432 35678999999999999984 568999999999999999863100 0 0
Q ss_pred CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCC
Q 021648 150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVS 227 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~ 227 (309)
.....|..++++++|+|- +..||+++.|++|++||+++.+ .+++++ .|
T Consensus 266 ---------------------------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H 315 (422)
T KOG0264|consen 266 ---------------------------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GH 315 (422)
T ss_pred ---------------------------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc---CC
Confidence 011234567899999994 5677888999999999998743 334443 56
Q ss_pred CCccceEEECCC-CCEEEEEcCCCcEEEEECCCCce--------------EEEeecCCCCCcEEEECCCee-EEEEccce
Q 021648 228 RNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKE--------------VASWMSFDTEPPVIKWTPGSL-MFVTGSSE 291 (309)
Q Consensus 228 ~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~~--------------~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d 291 (309)
...|..|.|||. ...|||++.|+.+.|||+..-.. +-.-.+|...|+.+.|+|+.. .++|++.|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 788999999996 57889999999999999965211 122247999999999999986 56778877
Q ss_pred --EEEeeec
Q 021648 292 --LSFWIPD 298 (309)
Q Consensus 292 --~~~~~~~ 298 (309)
+++|.+.
T Consensus 396 N~LqIW~~s 404 (422)
T KOG0264|consen 396 NILQIWQMA 404 (422)
T ss_pred ceEEEeecc
Confidence 7888664
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=203.94 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=168.2
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCcee
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESL 80 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i 80 (309)
++...|+||.+.|..|+||.++ +|+|+|-|+|||||++...+|+++|.... -|++++|+| |.+++++++. |+.+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-fVTcVaFnPvDDryFiSGSL---D~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHND-FVTCVAFNPVDDRYFISGSL---DGKV 434 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCC-eeEEEEecccCCCcEeeccc---ccce
Confidence 3567789999999999999864 88999999999999999999999987654 599999999 5567887765 8999
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCE
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY 160 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (309)
|+|++...+.+....-+ +-|++++|.|||+..+.|+.+|.+++++.+..+.+........
T Consensus 435 RiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~------------------- 494 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH------------------- 494 (712)
T ss_pred EEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec-------------------
Confidence 99999887766555544 8899999999999999999999999999877665433221110
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
+.++ .. + ..|+.+.|.|.. ..++..+.|.+|||+|.+...++..|.... ..+.-....|++|
T Consensus 495 -------~~Kk-------~~-~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 495 -------NKKK-------KQ-G-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSSD 557 (712)
T ss_pred -------cCcc-------cc-C-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEccC
Confidence 0000 00 1 135666666533 368888999999999998888887776432 1233456889999
Q ss_pred CCEEEEEcCCCcEEEEECC
Q 021648 240 GMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~ 258 (309)
|++|+++++|..|+||+..
T Consensus 558 gk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKND 576 (712)
T ss_pred CCEEEEeecCceEEEEeCC
Confidence 9999999999999999984
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.6e-26 Score=186.98 Aligned_cols=249 Identities=17% Similarity=0.276 Sum_probs=192.0
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+...+|++|.|.|..|+++. ..++|+|.|++||.|-.+. ..++++.+.. .+..+.-......++++ -..|-
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s-~~~gIdh~~~~~~FaTc-----Ge~i~ 170 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKS-VYLGIDHHRKNSVFATC-----GEQID 170 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeeccc-ccccccccccccccccc-----Cceee
Confidence 34678999999999999998 6888999999999998764 4666665532 23333322223333332 24799
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEE-EC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA-FG 158 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 158 (309)
+||.+...++..+.--.+.|.++.|+|- ...|++|+.|++|.++|+++..+...+.+.-+ +..++.|....+.++ .|
T Consensus 171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccc
Confidence 9999999999999999999999999995 45788888999999999999988766544433 345667766666665 47
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
..++.||+|....+ . ....+|.+.+..|.|||.|+.+++|+.|++|+||....+.....+..+.. ..|.+|.||.
T Consensus 251 ~nlY~~DmR~l~~p-~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM--q~V~~Vk~S~ 325 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRP-L--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM--QHVFCVKYSM 325 (433)
T ss_pred ccceehhhhhhccc-c--hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh--heeeEEEEec
Confidence 89999999987643 2 23345667889999999999999999999999999988776665543321 3578899999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEE
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVA 264 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~ 264 (309)
|.+|+++||+|+.|++|.....+++.
T Consensus 326 Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccEEEecCCCcceeeeecchhhhcC
Confidence 99999999999999999987655543
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.1e-25 Score=181.10 Aligned_cols=249 Identities=14% Similarity=0.270 Sum_probs=189.6
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee--eccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
++++|=.|..+|+++.|+|...+|++|+.|++||++|+......+.+ .....+|.++.|+|.|++++.+.. ..++
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd---Hp~~ 240 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD---HPTL 240 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC---CCce
Confidence 67889999999999999999999999999999999999865444333 334567999999999999998864 6799
Q ss_pred EEEEccCCceEEE---eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-C---ceeEEECCCC-cE
Q 021648 81 RLLSLHDNKYLRY---FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-G---RPAAAYDDQG-LV 152 (309)
Q Consensus 81 ~~~d~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~---~~~~~~~~~~-~~ 152 (309)
|+||+++-++... -.+|++.|++|.+++.++.-+|+|.||.|++||--+++|+.++... + ..+..+..++ .+
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 9999998765433 2579999999999999999999999999999999899998877432 2 2334555544 56
Q ss_pred EEEEECCEEEEEECCCCCcCCceEEEeCCC---CCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCCeEeEEeeecCCCC
Q 021648 153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGD---ISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSR 228 (309)
Q Consensus 153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~ 228 (309)
++.+.|..+++|++.... .+..++-+|. ..--....|+....+++.-. ..+.+.-||.+++..+.... ..|.
T Consensus 321 LsSG~DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lgHn 396 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LGHN 396 (430)
T ss_pred eecCCcceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cCCC
Confidence 667789999999987643 2223332221 11112234555555555443 34678889999887665443 3577
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
+.+..+.-||.+--+.|||.|-.+|.|-.+
T Consensus 397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceEEEeCCCCCceeeecccceeeeeeec
Confidence 778888899999999999999999999865
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-25 Score=174.45 Aligned_cols=247 Identities=13% Similarity=0.187 Sum_probs=184.7
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC---ceeeeeeccccceeEEEEec--CCCEEEEEcCCCCCceeEE
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~i~~ 82 (309)
.+|++-|..+..+--|++|||+|.|++|||+.+... ..+.+|.+|..+|..++|.. -|+.+++++ +|+.|-+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---YDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS---YDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee---cCceEEE
Confidence 479999999999999999999999999999999743 45788999999999999976 455566554 6999999
Q ss_pred EEccCCc--eEEEeeecccCEEEEEecCCC--CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648 83 LSLHDNK--YLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 158 (309)
Q Consensus 83 ~d~~~~~--~~~~~~~h~~~v~~v~~~~~~--~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (309)
|..++++ ....+..|...|++|+|.|.. -.|+.++.||+|.+.+++....-...+..
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~------------------- 145 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV------------------- 145 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-------------------
Confidence 9998875 344567899999999999964 47899999999999987654111000000
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC---C-----------CEEEEEeCCCcEEEEECCCCeEe--EEee
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---G-----------RLMLLTTMEGHIHVLDSFRGTLL--STYN 222 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g-----------~~l~~~~~dg~v~i~d~~~~~~~--~~~~ 222 (309)
..|...+++++..|- | +.|++|+.|..|+||+...++-+ .+++
T Consensus 146 ---------------------~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 146 ---------------------FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred ---------------------hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence 011122333433332 2 56999999999999998765322 2232
Q ss_pred ecCCCCCccceEEECCCC----CEEEEEcCCCcEEEEECCCC-c--eEEEeecCCCCCcEEEECCCeeEEEEccce--EE
Q 021648 223 VKPVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSG-K--EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LS 293 (309)
Q Consensus 223 ~~~~~~~~~~~~~~sp~g----~~l~s~s~Dg~i~vwd~~~~-~--~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~ 293 (309)
.|...+..++|.|.- .+||++|.||++.||..... + ....+..++..+.++.||+.|+.|+.++.| ++
T Consensus 205 ---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 205 ---GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred ---hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 466788899999964 68999999999999998632 1 122344567889999999999988777766 77
Q ss_pred EeeecCC
Q 021648 294 FWIPDLS 300 (309)
Q Consensus 294 ~~~~~~~ 300 (309)
+|-.++.
T Consensus 282 lwke~~~ 288 (299)
T KOG1332|consen 282 LWKENVD 288 (299)
T ss_pred EEEeCCC
Confidence 7877665
No 104
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.6e-25 Score=194.85 Aligned_cols=288 Identities=14% Similarity=0.210 Sum_probs=214.5
Q ss_pred ecCCCcceEEEEeCC-C----------CCEEEEeeCCCcEEEEEcCCCceeee---------------------------
Q 021648 7 FRDYNGRISSMDFHK-S----------SSYLVTASDDESIRLYDVTAATCLKT--------------------------- 48 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~-~----------~~~l~t~s~D~~v~iWd~~~~~~~~~--------------------------- 48 (309)
+--|+..|..|.--| + ..-+.|+|.|+|||+||++.+..-..
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 445888888777544 1 13578999999999999975221110
Q ss_pred ----------eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecC---CCCeEEE
Q 021648 49 ----------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFIS 115 (309)
Q Consensus 49 ----------~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s 115 (309)
.-....++.+++.+|+++.++++.. -+++|+||+.+-+++..+..|..+|.++.|+- ..+.|++
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr---~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR---GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCc---cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence 1122236789999999999987754 36899999999899999999999999999983 2568999
Q ss_pred ecCCCcEEEeeCCCce-eeeeeeecC--ceeEEECCC---CcEEEEEECCEEEEEECCCCCcCCceEEEe---CCCCCCC
Q 021648 116 GSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQ---GLVFAVAFGGYIRMFDARKYEKGPFDIFSV---GGDISDA 186 (309)
Q Consensus 116 ~s~Dg~v~~Wd~~~~~-~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~ 186 (309)
+|.|+.|.++|...+- ++.++..+. ...+.+... .+.++++.|..|..=-.++.. .-.++.- ......+
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--CceeccccccccccceE
Confidence 9999999999975432 112222111 112223222 356777766655432111110 1111111 1122356
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 021648 187 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW 266 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~ 266 (309)
..++..|..+++++++.|..|+|||+.++++.+.|.....+.+..+.+...|.|.|+|+...|.++.++|..++++++.+
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 77889999999999999999999999999999999876667678889999999999999999999999999999999999
Q ss_pred ecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 267 MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 267 ~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
.+|+..|+.+.|.+|-+.|++++.|.=+++|.+
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 999999999999999999999999966666654
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.2e-25 Score=188.93 Aligned_cols=229 Identities=17% Similarity=0.272 Sum_probs=187.6
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.+-|.++.+.|||+.|++|+.-.++.|||+...+. ...+......+..++.+||.+..+++.. |+.|+|||+++.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQ 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEcccc
Confidence 45688999999999999999999999999975443 2334433345677889999887776654 889999999999
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 168 (309)
..++.|+||++.+.++.++.||..|.||+.|.+||.||+++++.... +
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-----h--------------------------- 589 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----H--------------------------- 589 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-----h---------------------------
Confidence 99999999999999999999999999999999999999987653210 0
Q ss_pred CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 248 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~ 248 (309)
. -.++|.++..+|++.+++.|..++.|-+.-....+. + .. ..|..+|.++.|++.|+++++.+.
T Consensus 590 ----d--------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-y--ql-hlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 590 ----D--------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-Y--QL-HLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ----h--------hhhhheecccCCCccceeeecccCcEEEEecCCccc-e--ee-cccccEEEEEEecccCceeeecCc
Confidence 0 013566778899999999999999998876544332 2 22 246788999999999999999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 249 DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 249 Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
|..+..|...-|..+-..+ .++.|.+...|-|.+++|+|+.|
T Consensus 654 DnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 654 DNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred hhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 9999999999888776654 34578999999999999999998
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.5e-23 Score=167.13 Aligned_cols=244 Identities=16% Similarity=0.240 Sum_probs=190.6
Q ss_pred eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC--CCcEEE
Q 021648 47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLL 124 (309)
Q Consensus 47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~--Dg~v~~ 124 (309)
+.+......+..+.|+++|..+++++. |.++++||..++++++++..++..|..++|.-..+.++.++. |.+||+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~---dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSE---DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecC---CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344444556899999999999998764 789999999999999999999999999999877778887776 999999
Q ss_pred eeCCCceeeeeeeecCc--eeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648 125 WDQRAEKCQGLLRVQGR--PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT 201 (309)
Q Consensus 125 Wd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~ 201 (309)
-++.++++++.+..+.. .....+|. ..+++++.|++|++||+|..+. ..++.+. .-..++|+|+|-++|++
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c--qg~l~~~----~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC--QGLLNLS----GRPIAAFDPEGLIFALA 158 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--ceEEecC----CCcceeECCCCcEEEEe
Confidence 99999999888765543 33444553 5678888899999999995432 2233332 23467999999999999
Q ss_pred eCCCcEEEEECCCC--eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCC---cEE
Q 021648 202 TMEGHIHVLDSFRG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP---PVI 276 (309)
Q Consensus 202 ~~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v---~~l 276 (309)
...+.|++||+++- .+..++............+.|||||++|+.....+.+++.|.-+|....++..++..- ...
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 98889999998752 3334444321223345578999999999999999999999999999988887776432 568
Q ss_pred EECCCeeEEEEccceEEEeeecC
Q 021648 277 KWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 277 ~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
.|+||++.+.+|+.|.++.+|.+
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEc
Confidence 89999999999999866666644
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-23 Score=187.36 Aligned_cols=287 Identities=18% Similarity=0.290 Sum_probs=206.0
Q ss_pred ccceEecCCCcceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
|.+|+|+...+.|++++|..||+. ||+|+.-|.+.+||++..+.+..+. .|...+..+.|-+...-++++ +.|+.
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta---~~DnS 311 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA---GADNS 311 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec---cCCCc
Confidence 678999976799999999999975 6777788999999999877766555 676677777776655555544 34888
Q ss_pred eEEEEccCC----ceEEEeeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCc-------e--------eeee----
Q 021648 80 LRLLSLHDN----KYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAE-------K--------CQGL---- 135 (309)
Q Consensus 80 i~~~d~~~~----~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~-------~--------~~~~---- 135 (309)
+++|-..++ ..++.-.||..+..++.|. .++..+.+++.|++.+.+++... + ....
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 888865543 3566778999999999998 57889999999999988875311 0 0000
Q ss_pred -eeecCc-----------------------------------------------------eeEEECCCCcE-EEEEECCE
Q 021648 136 -LRVQGR-----------------------------------------------------PAAAYDDQGLV-FAVAFGGY 160 (309)
Q Consensus 136 -~~~~~~-----------------------------------------------------~~~~~~~~~~~-~~~~~~~~ 160 (309)
++++.. .+++.+..|.+ +-+.+.|.
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 000000 01111222222 22223577
Q ss_pred EEEEECCCCCcCCceEEEe---CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee--------------
Q 021648 161 IRMFDARKYEKGPFDIFSV---GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-------------- 223 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~---~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------------- 223 (309)
|.+|++...- ...+. ..+...+..++...-++.+++++.+|.+..||..+..++.....
T Consensus 472 Id~fNmQSGi----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 472 IDRFNMQSGI----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred EEEEEcccCe----eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 7777765421 11111 13456788899988889999999999999999877664444310
Q ss_pred ------------------------cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648 224 ------------------------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 279 (309)
Q Consensus 224 ------------------------~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~ 279 (309)
..+|.+.+.+.+|||||++|++++.|++|++||+.++..+-.+ ....+.+.+.|+
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~S 626 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFS 626 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEEC
Confidence 1235678889999999999999999999999999999887765 356688999999
Q ss_pred CCeeEEEEccce---EEEee
Q 021648 280 PGSLMFVTGSSE---LSFWI 296 (309)
Q Consensus 280 p~~~~l~s~~~d---~~~~~ 296 (309)
|+|.+|++++.| +++|.
T Consensus 627 PngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 627 PNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCEEEEEEecCceEEEEE
Confidence 999999999987 77773
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.3e-24 Score=180.53 Aligned_cols=281 Identities=16% Similarity=0.257 Sum_probs=215.7
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.+.|++|.|+|...+|++|+.|++++||-++ +...++.+.....++..++|.|+|...++.+ |--.-...||+++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s--~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS--GRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec--ccceEEEEeecccc
Confidence 4689999999999999999999999999876 4556788888889999999999999555544 23567899999987
Q ss_pred ce--EEEeeeccc-CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEE-CCCCcEEEEEECCEEEE
Q 021648 89 KY--LRYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAY-DDQGLVFAVAFGGYIRM 163 (309)
Q Consensus 89 ~~--~~~~~~h~~-~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~~ 163 (309)
+. ++.+.|+.. .+.....++++++++.++..|-|.+.-..++..+..++..+.. ...+ ++...+++++.+|.|.+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 74 344556653 4566678899999999999999999988888888777776643 2333 45556788888999999
Q ss_pred EECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC------eEeEEeeecCCCCCccceEEEC
Q 021648 164 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVSRNSTLEASFS 237 (309)
Q Consensus 164 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~s 237 (309)
||++.. .....+...|.. .-..+|.|++|.++|+|+..|-|.|||..+. +++.++. .-...|..+.|+
T Consensus 371 ~nl~~~--~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn 444 (514)
T KOG2055|consen 371 WNLRQN--SCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFN 444 (514)
T ss_pred EecCCc--ceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeC
Confidence 999864 233344444432 3467899999999999999999999996432 2222111 123467789999
Q ss_pred CCCCEEEEEcC--CCcEEEEECCCCceEEEeecCC---CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 238 PEGMFVISGSG--DGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 238 p~g~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~---~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
||++.||.+|. +..+++--+.+......|+.-+ +.++|++|||.+-+++.|-.+.++-+|.|
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 99999998876 5689998888877666666544 35789999999999999999876666654
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.1e-24 Score=185.01 Aligned_cols=285 Identities=15% Similarity=0.244 Sum_probs=208.3
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC------
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW------ 76 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~------ 76 (309)
..+.|+||++.|.+|+.+|.|.+||+||.||+||||.+.||.|++++.... .|.+++|.|.+...+.+.+.+-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEeC
Confidence 356789999999999999999999999999999999999999999887644 5899999998875333222221
Q ss_pred -------------------------CceeEEEEccCC----ceEEEeeecccCEEEEEecCCCCeEEEecCC---CcEEE
Q 021648 77 -------------------------DESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLD---RTVLL 124 (309)
Q Consensus 77 -------------------------d~~i~~~d~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D---g~v~~ 124 (309)
|.++-.|.-... .-++..-.|...|+.+.|+..|.+|++...| ..|.+
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 223334433211 1134455689999999999999999998765 47778
Q ss_pred eeCCCceeeeeeee-cC-ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648 125 WDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 202 (309)
Q Consensus 125 Wd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 202 (309)
..+...+.+..++. .+ ...+.|++...++.++....|++||+..... ....+. ....+..++++|.|..|+.++
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~t-g~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLT-GSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhc-CCeeeeeeeecCCCCeEEEec
Confidence 88765554443321 22 2346778888888888899999999764211 000111 113567889999999999999
Q ss_pred CCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC-------CC--ceEEEeecCCCC
Q 021648 203 MEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-------SG--KEVASWMSFDTE 272 (309)
Q Consensus 203 ~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~-------~~--~~~~~~~~~~~~ 272 (309)
.|+++..||+..+. ..+++. .|...+.+|+|++.=..+++|+.||++.|+--. +. -+++.+.+|...
T Consensus 627 ~d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred CCCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 99999999987543 333333 356778899999999999999999999998632 11 135667788755
Q ss_pred ----CcEEEECCCeeEEEEccce--EEEe
Q 021648 273 ----PPVIKWTPGSLMFVTGSSE--LSFW 295 (309)
Q Consensus 273 ----v~~l~~~p~~~~l~s~~~d--~~~~ 295 (309)
|..+.|||....|.+++.| +++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 7778899999999888877 5554
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.3e-23 Score=159.22 Aligned_cols=257 Identities=17% Similarity=0.316 Sum_probs=185.3
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
.+.+|.+++|+|.|.+.|.||..+++||--.... +..-.+|+.++. +..++
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l--~~~r~~hea~~~-------pp~v~-------------------- 81 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL--IDLRHAHEAAKQ-------PPSVL-------------------- 81 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccc--cCcccccccccC-------CCeEE--------------------
Confidence 3678999999999999999999999998754321 111122322110 10111
Q ss_pred eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-----eeeecCc--eeEEE-C---CCCcEEEEEE-
Q 021648 90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGR--PAAAY-D---DQGLVFAVAF- 157 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-----~~~~~~~--~~~~~-~---~~~~~~~~~~- 157 (309)
-+.-+-|++.|.+++|+|+|..++|||.|++|++--+....+.. .+.++.- ...++ + ..+.+++.+.
T Consensus 82 -~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 82 -CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred -eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 11234588999999999999999999999999998765544322 1222211 11222 1 2345666554
Q ss_pred -CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee----cCCCCCccc
Q 021648 158 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----KPVSRNSTL 232 (309)
Q Consensus 158 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~~~~ 232 (309)
|..|++-|....+ . ...+.+|...+.++ ++=+|-++++|+.|.+|++||++-...+.++.. .......+.
T Consensus 161 gdc~iy~tdc~~g~--~--~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQ--G--FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred CcceEEEeecCCCC--c--ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 4455555654332 2 34556666655443 667899999999999999999988777765532 122335678
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCC
Q 021648 233 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 301 (309)
Q Consensus 233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~ 301 (309)
+++..|.|+.|++|-+|..+.+||++.++.+..+..|++.|.++.|+|...++.+++.|.++-+.+|+.
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 899999999999999999999999999999999999999999999999999999999998888887753
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=7.2e-24 Score=171.15 Aligned_cols=257 Identities=17% Similarity=0.241 Sum_probs=182.5
Q ss_pred cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC--EEEEEcCCCCCceeEEEE
Q 021648 8 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 8 ~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~i~~~d 84 (309)
.+|.-+|.++-|=| |...+.|+|.|.++|+||..+.+....|.-+. .|..-+++|=.. .++++. .-|..|++.|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~g--tr~~~VrLCD 174 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAG--TRDVQVRLCD 174 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEe--cCCCcEEEEe
Confidence 36888999999988 55688999999999999999876655554332 244445555332 233322 2378999999
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 162 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (309)
+.+|.+-.+++||.+.|.+|.|+|... .|+|||.||.||+||++.. .|. +
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf----------------------------~ 226 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF----------------------------R 226 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee----------------------------E
Confidence 999999999999999999999999876 5789999999999998643 222 2
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE-EeeecCCCCCccceEEE---CC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASF---SP 238 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~---sp 238 (309)
+.|..+.+.++... .-..+...++.++++.||.++++.+.|.++++|+..+|+... ++. +-.+ +.....++ +.
T Consensus 227 ~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g-~~~~-n~~~~~~~~~~~~ 303 (397)
T KOG4283|consen 227 VLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG-PIIH-NQTTSFAVHIQSM 303 (397)
T ss_pred EeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccc-cccc-cccccceEEEeec
Confidence 22222211111111 112345678999999999999999999999999998875322 211 1011 11111111 33
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 298 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~ 298 (309)
+...++--=.|+++.++++-++..+.-+..|-..+.|.+|.|+-+..-+|..|+.+.+|.
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 434444444568899999999999999999988999999999999999999986664443
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=191.18 Aligned_cols=245 Identities=20% Similarity=0.327 Sum_probs=194.2
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC--ceeeeeeccccceeEEEE-ecCCCEEEEEcCCCCCcee
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~~~s~~g~d~~i 80 (309)
...|+.|++-|+.+...-+++.|+|+|.|.||++|++..+ -|+.++..|..-|.+++. .++...+++ +|.|+.|
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS---gGLD~~I 142 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS---GGLDRKI 142 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe---cCCCccE
Confidence 3567889999999999999999999999999999999876 789999999988999998 444444443 4779999
Q ss_pred EEEEccCCce----------EEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCC
Q 021648 81 RLLSLHDNKY----------LRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 149 (309)
Q Consensus 81 ~~~d~~~~~~----------~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~ 149 (309)
.+||++++.. ...+. |+.+.|.+++.++.+..|++|+..+.+++||.++.+.+
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki---------------- 206 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI---------------- 206 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----------------
Confidence 9999997732 23344 89999999999999999999999999999998876432
Q ss_pred CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCC
Q 021648 150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 229 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 229 (309)
..+.||...|.++-.++||+.+++++.||+|++||+....++.++.. |..
T Consensus 207 ---------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e 256 (735)
T KOG0308|consen 207 ---------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKE 256 (735)
T ss_pred ---------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---ccC
Confidence 22335667789999999999999999999999999988888888764 456
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEEEccceEEEeee
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIP 297 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~~~d~~~~~~ 297 (309)
.+|++.-+|+=.++++|+.||.|+.=|+++.....-+-.-.++|..+..+-..+ .+.+..++++-|-.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 699999999999999999999999999988533222222344566666553332 45555555666643
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.2e-23 Score=186.63 Aligned_cols=234 Identities=18% Similarity=0.305 Sum_probs=188.5
Q ss_pred EecCCCcceEE-EEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 6 SFRDYNGRISS-MDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 6 ~~~~h~~~V~~-i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
.|.+|.+-|.. +++.+ ++-++++|+.|.++.+|...+.+++.++.+|+..|.+++...++. ++++ +||.++++|
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg---SWD~TakvW 127 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG---SWDSTAKVW 127 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec---ccccceEEe
Confidence 46678887776 88875 555799999999999999999999999999999888777666665 5654 489999999
Q ss_pred EccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc--eeEEECCCCcEEEEEECCEE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFAVAFGGYI 161 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i 161 (309)
-.. ++...+++|+..|+++...|.+ .++|||.|++|++|.- +++..++..+.. ...+.-++..+++++.||.|
T Consensus 128 ~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~I 202 (745)
T KOG0301|consen 128 RIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSI 202 (745)
T ss_pred cch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceE
Confidence 753 4556699999999999999987 8999999999999963 555656554332 23455677789999999999
Q ss_pred EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648 162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
++|++... .+....+|.+-+.+++..+++..+++++.|+++++|+.. ++...+.. +..++|++.+-++|.
T Consensus 203 r~w~~~ge-----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 203 RLWDLDGE-----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGD 272 (745)
T ss_pred EEEeccCc-----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEeeCCC
Confidence 99998421 255667888889999988999999999999999999865 66666553 345788888888876
Q ss_pred EEEEEcCCCcEEEEECCC
Q 021648 242 FVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~ 259 (309)
|++|+.||.||||....
T Consensus 273 -Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 -IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -EEEeccCceEEEEEecc
Confidence 57888899999999874
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=6e-24 Score=187.00 Aligned_cols=251 Identities=20% Similarity=0.239 Sum_probs=183.5
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
++.+..|.++|..+.|.|-...|++++.|.++|+||+.+++++.. +.+|...|..+||.+....+++. +|-|+.|.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t--GgRDg~il 170 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT--GGRDGEIL 170 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee--ccCCCcEE
Confidence 455678999999999999667899999999999999999988866 89999999999999987765544 35699999
Q ss_pred EEEccCCc--------------------e-------EEEeeecccCEEE---EEecCCCCeEEEecC-CCcEEEeeCCCc
Q 021648 82 LLSLHDNK--------------------Y-------LRYFKGHHDRVVS---LSLCSSKDCFISGSL-DRTVLLWDQRAE 130 (309)
Q Consensus 82 ~~d~~~~~--------------------~-------~~~~~~h~~~v~~---v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~ 130 (309)
|||+.-.. . +..-+.|...|.+ +.+..|..+|||+|. |+.|++||++.+
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99985322 0 1112234455555 566678889999988 999999999876
Q ss_pred eeeeeee------e--c-----CceeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC--CeEEEEccC
Q 021648 131 KCQGLLR------V--Q-----GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFSND 194 (309)
Q Consensus 131 ~~~~~~~------~--~-----~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~v~~s~d 194 (309)
.+..... + . +....+.+.. ..+++.+.|+.|++|+++.....+...+. ++... -..-..|||
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--CcccceeeeeeecCCC
Confidence 5432221 1 1 1223344443 45777778999999999887665543332 22211 122257999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCC
Q 021648 195 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 195 g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
+.++++|+.|++.++|.+.+.+.--.. ...|...|..++|.|. -.-++|+++|-+++||++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~--l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPAL--LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhh--hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999999998765533222 2245667888999884 467888899999999999664
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=5.6e-24 Score=183.10 Aligned_cols=239 Identities=16% Similarity=0.283 Sum_probs=172.4
Q ss_pred eeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc----eEEEeee-cccCEEEEEecCCCCeEEEecCCCcE
Q 021648 48 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTV 122 (309)
Q Consensus 48 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~----~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~v 122 (309)
.+.+|...|..+++.|.|..+++++ +|++|+.||+..-. ..+.++- -...|+++.|++.+..|+..+.....
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs---~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGS---LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred eccCCceEEEEeeecCCCceeeecc---ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4567777899999999999999764 69999999986532 1222221 12368999999999988888878889
Q ss_pred EEeeCCCceeeeee----------eecCce----eEEECC--CCcEEEEEECCEEEEEECCCCCcCCceEE---EeCCCC
Q 021648 123 LLWDQRAEKCQGLL----------RVQGRP----AAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIF---SVGGDI 183 (309)
Q Consensus 123 ~~Wd~~~~~~~~~~----------~~~~~~----~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~ 183 (309)
+++|-..-...... ...++. +.+++| ...+++++.|+++|+||+.+.+. ...++ ..++..
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGGKR 317 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCCcc
Confidence 99984322222111 112222 223444 45689999999999999987553 23333 234455
Q ss_pred CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC--CccceEEECCCCCEEEEEcCCCcEEEEECCCC-
Q 021648 184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDGSVYAWSVRSG- 260 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~- 260 (309)
-.+..++|+|||+.+|+|..||.|.+||..+....-.+.....|. ..+.++.||+||++|+|-|.|+++++||++.-
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 678899999999999999999999999975544333333333343 47899999999999999999999999999874
Q ss_pred ceEEEeecCCC--CCcEEEECCCeeEEEEccc
Q 021648 261 KEVASWMSFDT--EPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 261 ~~~~~~~~~~~--~v~~l~~~p~~~~l~s~~~ 290 (309)
+++....+... .-+.++|||+.+++++|.+
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 44555544332 3467999999999999986
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.2e-23 Score=186.14 Aligned_cols=267 Identities=15% Similarity=0.213 Sum_probs=202.9
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC-ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 87 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~ 87 (309)
+|+...+.|+|.|+|+.|.|++.|+.||+|+...- +.-.++..+...+. ++......+++++. +++|.+|.+-+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~--~ia~~s~~f~~~s~---~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS--SIACYSNHFLTGSE---QNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE--EEeecccceEEeec---cceEEEeeCCC
Confidence 79999999999999999999999999999987654 44445553443444 44445567887765 78999999988
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEE-ECCEEEEE
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA-FGGYIRMF 164 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~~~ 164 (309)
++.--.+..-+-+++.++++.+|+++|.||.|-.|++-++.+...+..++... .....|+|.+.+++++ -||.+++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 77655566667789999999999999999999999999987766665555433 3356788888888876 58999999
Q ss_pred ECCCCCcCCce--EEEeCC-C-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648 165 DARKYEKGPFD--IFSVGG-D-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240 (309)
Q Consensus 165 d~~~~~~~~~~--~~~~~~-~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 240 (309)
|+........- +..... . ...+..++++|+|..++....|+.|.+|+....+....+.....+. .+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCC
Confidence 98754311000 000000 0 1234567899999999999999999999999888888777654443 37789999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF 285 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 285 (309)
+|||+++.||.|.|||+.+-+. ......|.+++|.|+...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 9999999999999999988332 1233578999999987543
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-22 Score=163.81 Aligned_cols=246 Identities=12% Similarity=0.233 Sum_probs=176.9
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----ceeeeeeccccceeEEEEecC--CCEEEEEcCCCCCceeEE
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~g~d~~i~~ 82 (309)
+|.+-|.++.|++-|+++||||.|++|+|||.... .|...++.|...+..+.+.+. |+-+++++ +|+++++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCCceee
Confidence 79999999999999999999999999999996532 456678889888888888753 34455554 5999999
Q ss_pred EEcc--CCc-------eEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeee------eee----ecCc
Q 021648 83 LSLH--DNK-------YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQG------LLR----VQGR 141 (309)
Q Consensus 83 ~d~~--~~~-------~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~------~~~----~~~~ 141 (309)
|.-. +.+ ...++......|+.|.|+|. |-.+++++.||++||++.-...... .+. .+++
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9752 111 24456677889999999995 5589999999999999853322111 111 0111
Q ss_pred ---e--eEEECC---CCcEEEEEECC------EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC----CEEEEEeC
Q 021648 142 ---P--AAAYDD---QGLVFAVAFGG------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTM 203 (309)
Q Consensus 142 ---~--~~~~~~---~~~~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~~l~~~~~ 203 (309)
+ ++...+ ...+++++.+. .++||......+.-..+..+.++..+|+.++|.|+- +.||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 1 122222 23578888765 899997543332233445666788899999999963 57899999
Q ss_pred CCcEEEEECCC------------CeE-----eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 204 EGHIHVLDSFR------------GTL-----LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 204 dg~v~i~d~~~------------~~~-----~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
|| |+||.+.. +.. +....-...|...++++.|+--|..|++.|.||++|+|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99 99999752 111 11112234577789999999999999999999999999874
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=183.18 Aligned_cols=279 Identities=19% Similarity=0.307 Sum_probs=193.2
Q ss_pred EEEeCCC---CCEEEEeeCCCcEEEEEcCCCc------eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648 16 SMDFHKS---SSYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 86 (309)
Q Consensus 16 ~i~~s~~---~~~l~t~s~D~~v~iWd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~ 86 (309)
+..|++- ..+|+-+-.||.|+++|..... .++.+..|...|..+.+.|....++.++ | |.++++||++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas--G-DsT~r~Wdvk 130 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS--G-DSTIRPWDVK 130 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc--C-Cceeeeeeec
Confidence 4677653 3578999999999999986422 1355677888899999999333455444 3 8999999999
Q ss_pred CCceEEE--eeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeee--------------------ee--e----
Q 021648 87 DNKYLRY--FKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG--------------------LL--R---- 137 (309)
Q Consensus 87 ~~~~~~~--~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~--------------------~~--~---- 137 (309)
.++.+.. +.||.+.|.+++|.|. ...|++|+.||.+.|||++-..... .+ +
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 9887766 8999999999999995 4589999999999999986432100 00 0
Q ss_pred -ecC------ceeEEECCCCcEEEEEE-CCEEEEEECCCCCc----CCceEEEeCCC---CCCCeEEEEccCCCEEEEEe
Q 021648 138 -VQG------RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK----GPFDIFSVGGD---ISDANVVKFSNDGRLMLLTT 202 (309)
Q Consensus 138 -~~~------~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~----~~~~~~~~~~~---~~~~~~v~~s~dg~~l~~~~ 202 (309)
.+. .....+.+...+++++. |+.|++||+|+... .+........+ .-.+.+++....|.+|.+.+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 000 01234445556666654 89999999986432 22221111111 23566777888889999999
Q ss_pred CCCcEEEEECCCCeEeEEeeecCCCCCc-cceEEECCCCCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcEEEECC
Q 021648 203 MEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTP 280 (309)
Q Consensus 203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~p 280 (309)
.|+.|+.||+.+-..--........... -..-..+||+.++++|+.|+..++|.+.+.+. ...+.+|.-.|++++|.|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 9999999998653221111111111111 12346799999999999999999999988654 566789999999999999
Q ss_pred Ce-eEEEEccce--EEEeee
Q 021648 281 GS-LMFVTGSSE--LSFWIP 297 (309)
Q Consensus 281 ~~-~~l~s~~~d--~~~~~~ 297 (309)
.. .-+++.+.| +++|..
T Consensus 371 S~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccCCCceeeccCcceEEEec
Confidence 64 345555777 666755
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.9e-21 Score=167.21 Aligned_cols=238 Identities=19% Similarity=0.306 Sum_probs=181.2
Q ss_pred EecCCCc-ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 6 SFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 6 ~~~~h~~-~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
.|++++. -|.|++|.++|.. +||.++|.|.||+..+.+..++...|+.+|.++|...+|..+ + +|.|..|-+||
T Consensus 240 ~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-S---GgKDRki~~Wd 314 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-S---GGKDRKIILWD 314 (626)
T ss_pred ccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-e---cCccceEEecc
Confidence 3555544 5899999999865 599999999999998777777777999999999999888644 3 46699999998
Q ss_pred ccCCce----------------------------------------EEEeeecccCEEEEEecCCCCeEEEecCCCcEEE
Q 021648 85 LHDNKY----------------------------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 124 (309)
Q Consensus 85 ~~~~~~----------------------------------------~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~ 124 (309)
-.-.+. ....++|.+..+.++.+|+.+.++|++.|+.+++
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence 321110 1224689999999999999999999999999999
Q ss_pred eeCCCceeeeeeeec-CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC
Q 021648 125 WDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM 203 (309)
Q Consensus 125 Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~ 203 (309)
|+ ..+++...... ...+..++|.+.++.+...|...+.|..+.. ..++.-...++++++|+|+|.+||.|+.
T Consensus 395 W~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-----lv~~~~d~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 395 WN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-----LVTIHTDNEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred cc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-----eEEEEecCCceEEEEEcCCCCEEEEecC
Confidence 98 55555444332 2234567788844444567889999987522 3344444678999999999999999999
Q ss_pred CCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648 204 EGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 204 dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
|+.|++|-... +.......... ..++..+.||+|++++.+-|-|-.|-.|..
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~--gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCS--GSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeec--CceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999998754 44444444333 267888999999999999999999999953
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=175.00 Aligned_cols=222 Identities=19% Similarity=0.302 Sum_probs=172.3
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc----
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---- 86 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~---- 86 (309)
.++|.++.-+|+|.+|+.|.--+.+-+|.+.+|..+..+..|-..++++.|+.|+..+++++. |+.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEEeecc
Confidence 578999999999999998889999999999999999999999999999999999999998865 8899999874
Q ss_pred -----CCceEEEeeecccCEEEEEecCC--CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648 87 -----DNKYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 159 (309)
Q Consensus 87 -----~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (309)
+-+++..+..|+=+|+++...+. ..+|+|+|.|.++++||+..+.....+..+.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------------------- 218 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------------------- 218 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-------------------
Confidence 23568889999999999988764 3489999999999999998876554443322
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC----------------CeEeEEeee
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------------GTLLSTYNV 223 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~----------------~~~~~~~~~ 223 (309)
.+.+++.+|-++.+-.|+.+|.|.+.++.. ++.+..+.
T Consensus 219 -------------------------si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~- 272 (476)
T KOG0646|consen 219 -------------------------SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV- 272 (476)
T ss_pred -------------------------cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec-
Confidence 223344444444444444444444433321 11111121
Q ss_pred cCCCCC--ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648 224 KPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 282 (309)
Q Consensus 224 ~~~~~~--~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 282 (309)
.|.+ .|.+++.+-||..|++|+.||.++|||+.+.++++++....++|+-+.+.|=.
T Consensus 273 --Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 273 --GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred --cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 2333 78899999999999999999999999999999999988778899999987743
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-22 Score=178.76 Aligned_cols=302 Identities=13% Similarity=0.229 Sum_probs=230.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+++.+|++|...|+++.-+|-=..+|.|-.||+|.|+++..++.+.+++....+|+.++|..||+.+++++. ..|.+.
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~--~~G~m~ 270 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR--SNGDMA 270 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc--CCceEE
Confidence 578899999999999999998889999999999999999999999999987788999999999998776643 257899
Q ss_pred EEEccCCceEEEee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee------------ee--eeeec---Cc--
Q 021648 82 LLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC------------QG--LLRVQ---GR-- 141 (309)
Q Consensus 82 ~~d~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~------------~~--~~~~~---~~-- 141 (309)
+||++..+.+..+. .|.+.|....|.|..-.++|++.|..+++|=+.++.. .. .++.. ++
T Consensus 271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 99999988877776 7889999999999888999999999999994432110 00 00000 00
Q ss_pred ----------------------eeE-----------EE------CCC--------------CcEEEEE-ECCEEEEEECC
Q 021648 142 ----------------------PAA-----------AY------DDQ--------------GLVFAVA-FGGYIRMFDAR 167 (309)
Q Consensus 142 ----------------------~~~-----------~~------~~~--------------~~~~~~~-~~~~i~~~d~~ 167 (309)
... .. .++ ..++++- .+..++.|+.+
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 000 00 000 1133332 23567888888
Q ss_pred CCCcCCceEEE--eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648 168 KYEKGPFDIFS--VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 245 (309)
Q Consensus 168 ~~~~~~~~~~~--~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s 245 (309)
+...+...+.. .......+.+|+.|+.|++.+.|...|+|-+|++.+|-...+|...+.|..++..++..--++.++|
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence 76554332211 1112346789999999999999999999999999999888888655678888999988777899999
Q ss_pred EcCCCcEEEEECCCCce-----------------------------------------EEEeecCCCCCcEEEECCCeeE
Q 021648 246 GSGDGSVYAWSVRSGKE-----------------------------------------VASWMSFDTEPPVIKWTPGSLM 284 (309)
Q Consensus 246 ~s~Dg~i~vwd~~~~~~-----------------------------------------~~~~~~~~~~v~~l~~~p~~~~ 284 (309)
++.||-+..||..+... ++.|.+|+..+++++|||||+.
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 99999999999876541 2334579999999999999999
Q ss_pred EEEccceEEEeeecCCCccccc
Q 021648 285 FVTGSSELSFWIPDLSKLGAYV 306 (309)
Q Consensus 285 l~s~~~d~~~~~~~~~~~~~~~ 306 (309)
+++++.|.++..||+ ..+.++
T Consensus 591 lisasmD~tIr~wDl-pt~~lI 611 (910)
T KOG1539|consen 591 LISASMDSTIRTWDL-PTGTLI 611 (910)
T ss_pred EEEeecCCcEEEEec-cCccee
Confidence 999999977777766 444433
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.2e-23 Score=175.95 Aligned_cols=213 Identities=18% Similarity=0.242 Sum_probs=168.5
Q ss_pred cceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCc-------eeeeeeccccceeEEEEecCCCEEEEEcCC
Q 021648 3 VGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFTSHPTTVIYSSKN 74 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 74 (309)
+...+.+|+++=.+++|++.. -.|++++.|++|.+||+.... ....+.+|...|..++|++..+.++.+.
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-- 246 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-- 246 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee--
Confidence 456889999988899999854 478999999999999997322 2345788999999999999777665544
Q ss_pred CCCceeEEEEcc--CCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648 75 GWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 151 (309)
Q Consensus 75 g~d~~i~~~d~~--~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (309)
+.|+.+.+||.. +.+..+...+|.++|++++|+| ++..|||||.|++|.+||+|+-+.
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------- 307 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------- 307 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------
Confidence 348899999998 5677888899999999999999 456899999999999999875321
Q ss_pred EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeE-----------
Q 021648 152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS----------- 219 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~----------- 219 (309)
..+++.+|...+..|.+||.. ..|++++.|+.+.+||+.+-....
T Consensus 308 -----------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 308 -----------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred -----------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 123445566788999999976 567788899999999985421111
Q ss_pred EeeecCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCC
Q 021648 220 TYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 220 ~~~~~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+=.+.+|...|....|+|+- ..|+|+++|+.+.||.+..
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 112456788889999999975 6778899999999999863
No 123
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.2e-23 Score=180.77 Aligned_cols=240 Identities=17% Similarity=0.316 Sum_probs=195.9
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeee
Q 021648 17 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG 96 (309)
Q Consensus 17 i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~ 96 (309)
++|++ .+.||.| .+..|-+|+..++........+...|+.+.++++|..++.+.. ++.|.+||.++.+.+..+.+
T Consensus 183 ldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 183 LDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec---CCeEEEEehhhccccccccC
Confidence 56774 3455555 5779999999998866665555778999999999999999875 78999999999999999999
Q ss_pred -cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648 97 -HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 175 (309)
Q Consensus 97 -h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 175 (309)
|...|-+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---------------------------------------- 295 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---------------------------------------- 295 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----------------------------------------
Confidence 99999999998 56899999999999999876542211
Q ss_pred EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC-CCCEEEEE--cCCCcE
Q 021648 176 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG--SGDGSV 252 (309)
Q Consensus 176 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~--s~Dg~i 252 (309)
.+.+|...|..+++++|+.++|+|+.|+.+.|||.....++..+. .|...|-+++|+| ....||+| +.|++|
T Consensus 296 --~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 296 --TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred --hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 022345567788999999999999999999999997777776665 4677888999999 57888888 569999
Q ss_pred EEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc----eEEEe-eecCCCccccccCC
Q 021648 253 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS----ELSFW-IPDLSKLGAYVGRK 309 (309)
Q Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~----d~~~~-~~~~~~~~~~~~~~ 309 (309)
++||+.+++.+...-. .++|..|.|+|..+.|+++.. ++.+| .|.+.++.++-||.
T Consensus 371 ~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred EEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 9999999998887643 458999999999877766553 48999 56888888888874
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.4e-22 Score=180.00 Aligned_cols=290 Identities=18% Similarity=0.222 Sum_probs=203.1
Q ss_pred ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee--ee-----eeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KT-----INSKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~--~~-----~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+.||++-|.++.|+|.+..|+|+|.|+++.+|..++..-+ .. ..+...+....-|+++++.+++-+ .-+.
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g---~~Gg 339 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG---RTGG 339 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec---ccCc
Confidence 4599999999999999999999999999999987654322 12 223334466778889987777644 3567
Q ss_pred eEEEEccCC---ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeee---eecCce--eEEECC-C
Q 021648 80 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLL---RVQGRP--AAAYDD-Q 149 (309)
Q Consensus 80 i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~---~~~~~~--~~~~~~-~ 149 (309)
.++|--+.. .+.....||.+.|++|+|.|.|.+|+|.|.|.|-|++-.-..+ .-+.+ +.+++. +..+-+ +
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999973222 2345678999999999999999999999999999998643111 11111 112221 222223 3
Q ss_pred CcEEEEEECCEEEEEECCCC-------------------------------Cc---------------------------
Q 021648 150 GLVFAVAFGGYIRMFDARKY-------------------------------EK--------------------------- 171 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~-------------------------------~~--------------------------- 171 (309)
..+++++...-+|+|+..+. .+
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 34555555566677763210 00
Q ss_pred ---CCc-----------eEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEeEEeeecCCCCCccc
Q 021648 172 ---GPF-----------DIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTL 232 (309)
Q Consensus 172 ---~~~-----------~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~ 232 (309)
+++ ++..+=||-..+.+++.||+|+++|++.-.. .|++|+..+-.....+. .|.-.|.
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEE
Confidence 000 0011124556789999999999999886543 58899976655554443 3556788
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCCCce----EEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648 233 EASFSPEGMFVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 302 (309)
Q Consensus 233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~ 302 (309)
.++|||||++|+++|.|.++.+|....... .+..+.|+.-|.+..|+|++.+|+|+|.|.++-+|..++.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999999999999865432 3446789999999999999999999999966655555443
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.3e-23 Score=184.60 Aligned_cols=233 Identities=14% Similarity=0.217 Sum_probs=182.3
Q ss_pred eEEEEeCC-CCCEEEEeeCCCcEEEEEcCC---CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 14 ISSMDFHK-SSSYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 14 V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
+..|+|.+ +.++|||++..|.|-+||+.. .+.+..|..|.-.+..++|++....++.+. +.|++|+.||+...+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG--SQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG--SQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec--CCCceEEEEeeeccc
Confidence 44677875 568999999999999999986 566678889998999999998666555432 359999999999999
Q ss_pred eEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648 90 YLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 168 (309)
...++.+..+.|+.|.|+| .++.|+++...|.+++||+|....-
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~----------------------------------- 212 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC----------------------------------- 212 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH-----------------------------------
Confidence 9999999999999999998 4778999999999999998765311
Q ss_pred CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC-CEEEEEc
Q 021648 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGS 247 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-~~l~s~s 247 (309)
.+.+..|...+.++.++|++.+||+||-|++|+|||..++.......+. ...++.+|.|-|+- .+||+++
T Consensus 213 -------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 213 -------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred -------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhh
Confidence 0112235567889999999999999999999999998754433222221 23467789999975 5677775
Q ss_pred C--CCcEEEEECCCC-ceEEEeecCCCCCcEEEECC-CeeEEEEccceE
Q 021648 248 G--DGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTP-GSLMFVTGSSEL 292 (309)
Q Consensus 248 ~--Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p-~~~~l~s~~~d~ 292 (309)
. |-.|+|||++.. -+-.++..|...++.++|.. |...|.+++.|.
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence 4 779999999764 34577888999999999966 456778888773
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=158.04 Aligned_cols=276 Identities=17% Similarity=0.322 Sum_probs=197.9
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648 14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 93 (309)
Q Consensus 14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~ 93 (309)
-.|+.|++-|.+||.|..||.|-|||+.|...-+.+.+|-.+|.++||+++|..++++|. |..|++||+..|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeE
Confidence 678999999999999999999999999998888899999999999999999999999886 88999999999998877
Q ss_pred eeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeeeec--C--ce---eEEECCCCcEEEEE-ECCEEEEE
Q 021648 94 FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G--RP---AAAYDDQGLVFAVA-FGGYIRMF 164 (309)
Q Consensus 94 ~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~~-~~~~i~~~ 164 (309)
+. ...+|+.+.|+|.. +.++..-.+..-.+-++..+ ....+... + .. ...+++.+.++.++ ..|.+.++
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC-ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 76 67899999999853 34444444444444454432 12222211 1 01 12355666555554 56999999
Q ss_pred ECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEeEEeeecCCCCCcc-ceEEE
Q 021648 165 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GTLLSTYNVKPVSRNST-LEASF 236 (309)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-------~~~~~~~~~~~~~~~~~-~~~~~ 236 (309)
|..+.+- ..-+.... ...+..+.++..|+.++..+.|..||.|+... +++.-..+....-.... .+++|
T Consensus 181 ~a~t~e~--vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 181 DAETLEC--VASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred ecchhee--eeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 9776431 11111111 24577888999999999999999999998642 11110000000000111 25789
Q ss_pred CCCCCEEEEEcCC-CcEEEEECCCCceEEEeecCC-CCCcEEEECCCeeEEEEccce-EEEeee
Q 021648 237 SPEGMFVISGSGD-GSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSE-LSFWIP 297 (309)
Q Consensus 237 sp~g~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~s~~~d-~~~~~~ 297 (309)
|.+|.|+.+++.- ..++||....|..++-+.+-. .....+.|+|-...+++-.++ +++|..
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred cCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEe
Confidence 9999999888643 489999999999999887766 457889999999988887655 888843
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.4e-24 Score=188.78 Aligned_cols=225 Identities=20% Similarity=0.358 Sum_probs=181.4
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccC
Q 021648 21 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR 100 (309)
Q Consensus 21 ~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~ 100 (309)
|-+.+++....+..+|+||... +-.|...+.++........++ .+|+|..+.+|.+..-..+..|.+|..+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~---~Gg~~~k~~L~~i~kp~~i~S~~~hesp 72 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLV---TGGEDEKVNLWAIGKPNAITSLTGHESP 72 (825)
T ss_pred Ccccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeec---cCCCceeeccccccCCchhheeeccCCc
Confidence 3445667777888899999753 334444455554433333333 3577889999998877778889999999
Q ss_pred EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeC
Q 021648 101 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG 180 (309)
Q Consensus 101 v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 180 (309)
|.+|.|+++...|++|+.||+|++||++..+.+++ +.
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-------------------------------------------Lt 109 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-------------------------------------------LT 109 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------------hh
Confidence 99999999999999999999999999986654332 22
Q ss_pred CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 181 ~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
++..++..+.|+|-+.+.+.++.|..+.+||.+...+.+.+.. |...+..+.|+|+|+++++|++|.+++|||...|
T Consensus 110 gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag 186 (825)
T KOG0267|consen 110 GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG 186 (825)
T ss_pred ccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---CcceeEEEeecCCCceeeccCCcceeeeeccccc
Confidence 3445667888999999999999999999999997777777653 4455667899999999999999999999999999
Q ss_pred ceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648 261 KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300 (309)
Q Consensus 261 ~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~ 300 (309)
+.+.+|..|.+.+..+.|+|..-++++|+.|..+-.|+|.
T Consensus 187 k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 187 KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 9999999999999999999999999999999555555554
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-21 Score=158.32 Aligned_cols=238 Identities=16% Similarity=0.248 Sum_probs=179.0
Q ss_pred eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC--eEEEecCCCcEE
Q 021648 46 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVL 123 (309)
Q Consensus 46 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~Dg~v~ 123 (309)
+..+..|..++++++.+ +.++++++. |.+|++||+....++..+-.|.+.|+++.|.+.-. +|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGss---DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSS---DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCC---CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 45667888888888774 557776654 99999999999999999999999999999997643 899999999999
Q ss_pred EeeCCCceeeeeeeecC--ceeEEECCCCc-EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE
Q 021648 124 LWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL 200 (309)
Q Consensus 124 ~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~ 200 (309)
+|+...=.+...++.+. .+.....|.+. -++++.|+.+++|++-..+.. + +..+. .....|.|+|.|.+++.
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-~-v~~L~---~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-F-VLNLK---NKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc-e-eeccC---CcceeeEEcCCCCEEEE
Confidence 99976655555554332 33456677775 455677899999997654422 1 22221 12345899999998887
Q ss_pred EeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEE--
Q 021648 201 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW-- 278 (309)
Q Consensus 201 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~-- 278 (309)
.+.+ .|-+|.+.+..+...... ...+.++.| -++.++++|++|+.|++||..+..+...+.+|...|..+++
T Consensus 186 ~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASVFREIEN----PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eecc-EEEEEecccHhHhhhhhc----cccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 7655 456788776655544332 123444545 47889999999999999999998899999999999999883
Q ss_pred CCCeeEEEEccceEEEeeecC
Q 021648 279 TPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 279 ~p~~~~l~s~~~d~~~~~~~~ 299 (309)
.|.+.+|+|+++|..+.+|+.
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cCCceEEEEeccCceEEEEEc
Confidence 678899999999966655543
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.2e-21 Score=157.20 Aligned_cols=235 Identities=14% Similarity=0.207 Sum_probs=176.7
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCE--EEEEcCCCCCceeEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRL 82 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~~ 82 (309)
+....|+++|.+++|+.||..+++|+.|+.+++||+.++ +...+..|..+|..+.|.+...+ +++ ++||.++|.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T---GSWDKTlKf 141 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVT---GSWDKTLKF 141 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEe---cccccceee
Confidence 445679999999999999999999999999999999998 77788899999999999887763 333 458999999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee-----eeeeecCceeEEECCCCcEEEEEE
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-----GLLRVQGRPAAAYDDQGLVFAVAF 157 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 157 (309)
||....+++.+++ ..+++.+++.- ...++.+..|+.|.+++++.+..+ ..++.+.+...++.+...++.++.
T Consensus 142 WD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 142 WDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred cccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence 9999888887776 56777776653 246777778999999999765432 123334455566766666666677
Q ss_pred CCEEEEEECCCCC-cCCceEEEeC------CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648 158 GGYIRMFDARKYE-KGPFDIFSVG------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 230 (309)
Q Consensus 158 ~~~i~~~d~~~~~-~~~~~~~~~~------~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 230 (309)
+|.+-+..+.... ...+...... +....|++|+|.|....|++.+.||+...||-.....+.+.+ .+..+
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~---~~~qp 295 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE---THPQP 295 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC---cCCCc
Confidence 8888777654421 1122222111 112357889999999999999999999999987776666554 35577
Q ss_pred cceEEECCCCCEEEEE-cCC
Q 021648 231 TLEASFSPEGMFVISG-SGD 249 (309)
Q Consensus 231 ~~~~~~sp~g~~l~s~-s~D 249 (309)
+.+++|+.+|.++|-+ |.|
T Consensus 296 Itcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cceeEecCCCCEEEEEeecc
Confidence 8899999999988766 444
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=6.1e-21 Score=169.60 Aligned_cols=292 Identities=13% Similarity=0.226 Sum_probs=204.0
Q ss_pred ceEecCCCcceEEEEeCCCCC---EEEEeeCCCcEEEEEcCC--Cceeeee-----------------------------
Q 021648 4 GMSFRDYNGRISSMDFHKSSS---YLVTASDDESIRLYDVTA--ATCLKTI----------------------------- 49 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~---~l~t~s~D~~v~iWd~~~--~~~~~~~----------------------------- 49 (309)
..++.||.++|+|+.|-|+.+ .++||+.|+.|++|.+.. -.++.++
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw 126 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVW 126 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEe
Confidence 456789999999999998877 899999999999998761 1222222
Q ss_pred -------------------------------------------------------------eccccceeEEEEecCCC-E
Q 021648 50 -------------------------------------------------------------NSKKYGVDLVCFTSHPT-T 67 (309)
Q Consensus 50 -------------------------------------------------------------~~~~~~v~~~~~~~~~~-~ 67 (309)
++|..+|..++|...+. .
T Consensus 127 ~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 127 DKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred ecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCc
Confidence 23333333344433322 2
Q ss_pred EEEEcCCCCCceeEEEEccCCc---------------------eE----------EEeeecccCEEEEEecCCCCeEEEe
Q 021648 68 VIYSSKNGWDESLRLLSLHDNK---------------------YL----------RYFKGHHDRVVSLSLCSSKDCFISG 116 (309)
Q Consensus 68 ~~~~s~~g~d~~i~~~d~~~~~---------------------~~----------~~~~~h~~~v~~v~~~~~~~~l~s~ 116 (309)
++.+| .+.|..||+|.+.-+. .. ..+.||.+.|.++.|+|.+..|+|+
T Consensus 207 ~~laS-~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 207 LLLAS-SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred EEEEe-cCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 22222 2459999999874322 01 1134999999999999999999999
Q ss_pred cCCCcEEEeeCCCce--eeeeeeecCc-------eeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCC
Q 021648 117 SLDRTVLLWDQRAEK--CQGLLRVQGR-------PAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 186 (309)
Q Consensus 117 s~Dg~v~~Wd~~~~~--~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 186 (309)
|.|+++.+|...+.. .....++... -...+.+. ..+++-+..|..++|.... ...-......+||...|
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d-~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD-KTFWTQEPVISGHVDGV 364 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC-ccceeeccccccccccc
Confidence 999999999876543 3334444321 12334444 4677778889999998322 11112233567888999
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCC-----------------------------------eEeEEe----------
Q 021648 187 NVVKFSNDGRLMLLTTMEGHIHVLDSFRG-----------------------------------TLLSTY---------- 221 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-----------------------------------~~~~~~---------- 221 (309)
..++++|.|++|++.+.|.+-|+|-..-. +.++.|
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 99999999999999999998887643200 000000
Q ss_pred --------------------------------------------------------------------------eecCCC
Q 021648 222 --------------------------------------------------------------------------NVKPVS 227 (309)
Q Consensus 222 --------------------------------------------------------------------------~~~~~~ 227 (309)
+.-.+|
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 000123
Q ss_pred CCccceEEECCCCCEEEEEcCC-----CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648 228 RNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 228 ~~~~~~~~~sp~g~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
...+.+++.+|+|+.+||+... ..|++|+..+...+..+..|+-.|+.++||||+++|.+++.|.++-++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 5567789999999999999654 379999999999999999999999999999999999999999544333
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=2.8e-21 Score=164.40 Aligned_cols=292 Identities=17% Similarity=0.212 Sum_probs=204.9
Q ss_pred ceEecCCCcceEEEEeCCCC--CEEEEeeCCCcEEEEEcCCCce----eeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648 4 GMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
....+-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+. +..+..|..+|..+-|+|.....++++ ++|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss--SyD 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS--SYD 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee--ccC
Confidence 34556788999999999965 5789999999999999963322 345667888899999999776544443 369
Q ss_pred ceeEEEEccCCceEEEeee--cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eeeeeecC--ceeEEECC--CC
Q 021648 78 ESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQG--RPAAAYDD--QG 150 (309)
Q Consensus 78 ~~i~~~d~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~--~~~~~~~~--~~ 150 (309)
++||+-|++.+..-..+.. -......++|+.+...++.+..=|...+||.+++.. ...++++. ...+...| +.
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999999988653333322 334456778888777777777767999999987754 23333332 23344444 33
Q ss_pred cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC----CCeEeEEeeecCC
Q 021648 151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF----RGTLLSTYNVKPV 226 (309)
Q Consensus 151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~----~~~~~~~~~~~~~ 226 (309)
.+++++.|++.+|||+|+.....-++...-.|.-.|++..|||.+-.|++.+.|..|+|||.. .-+.+.++.....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence 566667899999999998654332344444566789999999998889999999999999972 2233322211001
Q ss_pred C--CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcE-EEECCCeeEEEEcc-ceEEEeee
Q 021648 227 S--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPV-IKWTPGSLMFVTGS-SELSFWIP 297 (309)
Q Consensus 227 ~--~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~-l~~~p~~~~l~s~~-~d~~~~~~ 297 (309)
+ .-......|.|+-.+|+.|-.-..|-|+|-..++.+..+..- ...|++ .+|||-+..+++|+ +-.++|++
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1 123456889999999999999999999999888877775332 224444 67999888565555 44666655
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.3e-20 Score=162.17 Aligned_cols=288 Identities=14% Similarity=0.190 Sum_probs=206.3
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCC--------cEEEEEcCCCceeeeeeccccceeEEEEecCC-CEEEEEcCCC
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDE--------SIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNG 75 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~--------~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~s~~g 75 (309)
+.+.+|+..|.|+..+||.-+++||-.-+ .+||||..+...++.+.....+|.+++|++.. ..++.....+
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence 34679999999999999988888776555 49999998888888888777789999999843 3344444456
Q ss_pred CCceeEEEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee------cCceeEEECC
Q 021648 76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV------QGRPAAAYDD 148 (309)
Q Consensus 76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~------~~~~~~~~~~ 148 (309)
.+..+.+||...+......+..++.|..+.|+|. .+.+++++ .+.+.+|+.+.+...+.... ....++.+.+
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 6888999999887766666777788999999995 45666666 78999999987765443211 1234567889
Q ss_pred CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee------
Q 021648 149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN------ 222 (309)
Q Consensus 149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~------ 222 (309)
++.++++.++|.|.+|+.+.... ......|...+.+++.-.+|.++. |+.|.+|..||-.-.+ +.+.+
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~----~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k-~r~~elPe~~G 330 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRI----SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK-LRETELPEQFG 330 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceE----EeEeeecCCceEEEEEecCccEee-cCccceEEeccccccc-cccccCchhcC
Confidence 99999999999999999764321 122225777899999999998766 9999999999832111 11000
Q ss_pred --------------------------------ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc---------
Q 021648 223 --------------------------------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK--------- 261 (309)
Q Consensus 223 --------------------------------~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~--------- 261 (309)
....|....+.++.+|+...++|++.|+.+++|+-...+
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPA 410 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCce
Confidence 001123344556777877788888888888888721110
Q ss_pred ----------------------------eEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecC
Q 021648 262 ----------------------------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 299 (309)
Q Consensus 262 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~ 299 (309)
.+.++...+.++++++|+|+|.+||.|+.| ++++..+.
T Consensus 411 ~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 411 ECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred eEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 011112236788999999999999999998 66665543
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.6e-22 Score=181.46 Aligned_cols=241 Identities=20% Similarity=0.330 Sum_probs=170.4
Q ss_pred cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC----ceeeeeeccc---cceeEEEEec-CCCEEEEEcCCCCCceeEEE
Q 021648 12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKK---YGVDLVCFTS-HPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~----~~~~~~~~~~---~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~ 83 (309)
+..++|+.+++-..++.++. ..++||.+... .|...+...+ +.+..+.+.. ..+.+++++. .+.|.+|
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~---nG~i~vW 115 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST---NGVISVW 115 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---CCcEEEE
Confidence 45566777888888888764 47799977532 2222222211 2233445543 3445666665 5689999
Q ss_pred EccC---CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECC
Q 021648 84 SLHD---NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 159 (309)
Q Consensus 84 d~~~---~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (309)
|+.. ++.+..|..|...+++++|++- .++|+|||+||+|++||++..+...+...
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~--------------------- 174 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS--------------------- 174 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---------------------
Confidence 9987 6667789999999999999974 67999999999999999987653322210
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
....++.|.|+| .+..++++...|.+++||++...+-.. ....|.+++.++.|+|
T Consensus 175 ----------------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 175 ----------------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--KLTAHNGPVLCLNWHP 230 (839)
T ss_pred ----------------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH--HhhcccCceEEEeecC
Confidence 113467788888 478899999999999999986443211 1235788999999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEee-cCCCCCcEEEECCCee-EEEEccc--eEEEeeecCCC
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGSL-MFVTGSS--ELSFWIPDLSK 301 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~-~l~s~~~--d~~~~~~~~~~ 301 (309)
++.+|||||.|+.|+|||+.+.+...... .-.+++.+|+|.|..+ +|++.+. |..+.+||+.+
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 99999999999999999998765432222 2246899999999864 6777765 44455555443
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.3e-21 Score=158.23 Aligned_cols=208 Identities=19% Similarity=0.334 Sum_probs=154.5
Q ss_pred cCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCc------------ee---eeeeccccceeEEEEecCCCEEEEE
Q 021648 8 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT------------CL---KTINSKKYGVDLVCFTSHPTTVIYS 71 (309)
Q Consensus 8 ~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~~~~ 71 (309)
+-|.+.|+++.+.+ .|+++++|+.||.+-+||++... |+ +.-.+|++.|..+.|.|..+.++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35899999999987 68999999999999999997432 21 1235788899999999988777765
Q ss_pred cCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCC---CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648 72 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 148 (309)
Q Consensus 72 s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~ 148 (309)
+ ..|.++++||.++-+....|+ ..+.|..-+++|- ...+++|..|-.|++=|+.++.+.+.
T Consensus 120 s--SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~------------- 183 (397)
T KOG4283|consen 120 S--SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT------------- 183 (397)
T ss_pred c--cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee-------------
Confidence 4 369999999999877666665 5567777777762 33566777777899888877755433
Q ss_pred CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCC-eEeEEe-----
Q 021648 149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLSTY----- 221 (309)
Q Consensus 149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~-~~~~~~----- 221 (309)
+.||...|.+|.+||..++ |++|+.||.|++||++.. .+...+
T Consensus 184 ------------------------------LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 184 ------------------------------LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred ------------------------------eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence 3455566777777776655 456777888888887643 112111
Q ss_pred ------eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648 222 ------NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 222 ------~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
+..+.|.+.+..++|+.||+++++++.|..+++|+..+|+
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 1123345667789999999999999999999999998875
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.6e-22 Score=155.93 Aligned_cols=211 Identities=14% Similarity=0.195 Sum_probs=157.7
Q ss_pred ccceEecCCCcceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCE--EEEEcCCC
Q 021648 2 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTT--VIYSSKNG 75 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g 75 (309)
.++.+|.||+++|..++|.. -|.+|||+++||.|.||.-++|. .......|+..|.+++|.|+.-. ++++++
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS-- 124 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS-- 124 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC--
Confidence 46788999999999999964 79999999999999999987763 23455678889999999998754 334443
Q ss_pred CCceeEEEEccCC---ceEEEeeecccCEEEEEecCC---C-----------CeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648 76 WDESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSS---K-----------DCFISGSLDRTVLLWDQRAEKCQGLLRV 138 (309)
Q Consensus 76 ~d~~i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~---~-----------~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~ 138 (309)
|+.|++.++.+. ...+....|.-.|++++|.|. | +.|+||+.|..|++|+..+.+.+...
T Consensus 125 -DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~-- 201 (299)
T KOG1332|consen 125 -DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER-- 201 (299)
T ss_pred -CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh--
Confidence 899999998664 234556789999999999985 4 56999999999999987655221110
Q ss_pred cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC----CEEEEEeCCCcEEEEECCC
Q 021648 139 QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~~l~~~~~dg~v~i~d~~~ 214 (309)
.+.+|..-++.++..|.- .++++++.||+|.||-...
T Consensus 202 ---------------------------------------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 202 ---------------------------------------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ---------------------------------------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 123444556667777643 6799999999999997542
Q ss_pred C-e-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 215 G-T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 215 ~-~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
. + ...++ .+ .....++.++||+.|+.|+.++.|..+++|.-.
T Consensus 243 e~e~wk~tl-l~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 243 EYEPWKKTL-LE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCcccccc-cc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 1 11111 11 123568899999999999999999999999864
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.5e-22 Score=161.47 Aligned_cols=215 Identities=19% Similarity=0.268 Sum_probs=155.6
Q ss_pred eEEEEccCCce-----EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee--eee----eecCceeEEECC
Q 021648 80 LRLLSLHDNKY-----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLL----RVQGRPAAAYDD 148 (309)
Q Consensus 80 i~~~d~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~--~~~----~~~~~~~~~~~~ 148 (309)
.+-|+.+..+. +..++||.+.|++++|++||+.|+|++.|++|++||++.-... ..+ ....-..+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 44555544443 3467899999999999999999999999999999998642111 111 111112344544
Q ss_pred C--CcEEEEEECCEEEEEECCCCCcCCceEEEe--------CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEe
Q 021648 149 Q--GLVFAVAFGGYIRMFDARKYEKGPFDIFSV--------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 218 (309)
Q Consensus 149 ~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~ 218 (309)
+ ..++++..++++++|.+.+.+.+.+..... ..+..++..+-+..++.++++++.|.+|.+|++. |.++
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 3 456777788999999876554443322111 1223455667778889999999999999999997 8888
Q ss_pred EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC---Cc-----eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS---GK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~---~~-----~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
...... ......++.||+|+|+|+++----++||.+-- |+ .+-.+++|.+.|..++|+|+.+..++++.
T Consensus 222 ~~idtn---q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 222 QSIDTN---QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeccc---cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 766532 22334679999999999999999999999732 22 35568899999999999999999999999
Q ss_pred eEEEeeec
Q 021648 291 ELSFWIPD 298 (309)
Q Consensus 291 d~~~~~~~ 298 (309)
|.++.+|+
T Consensus 299 DG~wriwd 306 (420)
T KOG2096|consen 299 DGKWRIWD 306 (420)
T ss_pred CCcEEEee
Confidence 95544443
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2.6e-21 Score=161.02 Aligned_cols=244 Identities=16% Similarity=0.273 Sum_probs=176.3
Q ss_pred ecCCCcceEEEEeCCCC--CEEEEeeCCCcEEEEEcCC----------------CceeeeeeccccceeEEEEecCCCE-
Q 021648 7 FRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPTT- 67 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~- 67 (309)
...|.+.++-+.-++-+ .+.|+=+.-|.|.|||+.. .+++.++.+|...-..++|+|-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888887755 4666667799999999742 2456677888776778999985444
Q ss_pred EEEEcCCCCCceeEEEEccCCce---EEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCcee
Q 021648 68 VIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 143 (309)
Q Consensus 68 ~~~~s~~g~d~~i~~~d~~~~~~---~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~ 143 (309)
++++ ..-..|++|...+|.= ...|.+|+..|-.++|+|. ...|+|||.||+|+|||+|.+.....+
T Consensus 227 LlsG---Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~------- 296 (440)
T KOG0302|consen 227 LLSG---DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV------- 296 (440)
T ss_pred cccC---ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-------
Confidence 3322 2356899999887652 3446789999999999996 458999999999999999876321111
Q ss_pred EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC---CeEeEE
Q 021648 144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLST 220 (309)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~---~~~~~~ 220 (309)
....+.++|+.+.++.+-.+|++|+.||+++|||++. +.++..
T Consensus 297 ----------------------------------~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 297 ----------------------------------STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred ----------------------------------EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 0112456899999999888999999999999999865 455566
Q ss_pred eeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCCce--------EE--------EeecCC--CCCcEEEECCC
Q 021648 221 YNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKE--------VA--------SWMSFD--TEPPVIKWTPG 281 (309)
Q Consensus 221 ~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~~--------~~--------~~~~~~--~~v~~l~~~p~ 281 (309)
|.. |..+|.++.|+|. ...|+++|.|..|.+||+.-..- .. -+.-|. ..+..+.|+++
T Consensus 343 fk~---Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 343 FKY---HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred EEe---ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence 663 6678999999995 57888899999999999854211 11 122343 46788999997
Q ss_pred ee-EEEEcc-ceEEEeee
Q 021648 282 SL-MFVTGS-SELSFWIP 297 (309)
Q Consensus 282 ~~-~l~s~~-~d~~~~~~ 297 (309)
-. ++++.+ ....+|.+
T Consensus 420 iPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 420 IPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred CCCeEEEecccceeEEEe
Confidence 43 444444 44666643
No 138
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=9.3e-22 Score=173.37 Aligned_cols=121 Identities=17% Similarity=0.322 Sum_probs=103.6
Q ss_pred EecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCceee------eeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648 6 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLK------TINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
.+.+|..-|+.+.|+| +..+|||||.|..|+||.+..|.... .+.+.+-.+.++-|+|..+.++++.. .+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a---~g 150 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA---HG 150 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc---Cc
Confidence 4678999999999999 56789999999999999998443221 23344556889999999888877654 56
Q ss_pred eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC
Q 021648 79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 129 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~ 129 (309)
.+++||+.+++.+..+.+|.+.|-+..|+.||+.|++++.|+.|+|+|.+.
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 899999999999999999999999999999999999999999999999863
No 139
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=153.71 Aligned_cols=276 Identities=17% Similarity=0.289 Sum_probs=189.8
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEEcCC-----Cc--e-----eeeeec-cccceeEEEEec-----CC--CEEEEEcC
Q 021648 14 ISSMDFHKSSSYLVTASDDESIRLYDVTA-----AT--C-----LKTINS-KKYGVDLVCFTS-----HP--TTVIYSSK 73 (309)
Q Consensus 14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-----~~--~-----~~~~~~-~~~~v~~~~~~~-----~~--~~~~~~s~ 73 (309)
.....|+|||.-|++-+.|..+++|++.. +. . ..+++- ....|...|+-+ ++ ..+++++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss- 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS- 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc-
Confidence 34678999999999999999999998852 10 0 001111 112245555542 22 2333333
Q ss_pred CCCCceeEEEEccCCceEEEeee--cccCE---EEEEecCCCCeEEEecCCCcEEEeeC-CCceeeeeeeecC-------
Q 021648 74 NGWDESLRLLSLHDNKYLRYFKG--HHDRV---VSLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQGLLRVQG------- 140 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~~~~~~~~~--h~~~v---~~v~~~~~~~~l~s~s~Dg~v~~Wd~-~~~~~~~~~~~~~------- 140 (309)
.|.-|.+||.-+|+....+.+ |.+++ .+++|+|||..|..| ..+.|+++|+ |.++-........
T Consensus 131 --r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 --RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred --ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 388999999999998777764 66654 568999999987765 6889999998 5554332221111
Q ss_pred --ceeEEECCCC-cEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCC
Q 021648 141 --RPAAAYDDQG-LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRG 215 (309)
Q Consensus 141 --~~~~~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~ 215 (309)
....+++|.. ..++++ +...+-|+.-... -.++.++++...|+-+++.++|+.|.+|.- +..|..||++..
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 1233455533 355544 5667777654432 236677889999999999999999888765 778999999763
Q ss_pred -eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC-CceEEEeecCCCCCcEEEECCCeeEEEEccceEE
Q 021648 216 -TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 293 (309)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~ 293 (309)
..+..+..+....+.-+-....|+|++|++|+.||.|++||+.+ +..+..+..|+..++.++++|-..++++.+....
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence 33333333222122222345578999999999999999999988 7778888889999999999999999999887655
Q ss_pred Eeee
Q 021648 294 FWIP 297 (309)
Q Consensus 294 ~~~~ 297 (309)
+-.+
T Consensus 364 f~~~ 367 (406)
T KOG2919|consen 364 FKYP 367 (406)
T ss_pred ecCC
Confidence 4444
No 140
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=7.5e-21 Score=159.19 Aligned_cols=206 Identities=15% Similarity=0.249 Sum_probs=159.3
Q ss_pred EecCCCcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCC-------ceeeeeeccccceeEEEEecCCCEEEEEcCCCCC
Q 021648 6 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
.+.||.++|..++|+| +...+||||.|.+|+||.+..+ +.+..+.+|+..|..+.++|....++.++ |.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa--g~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA--GSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc--cCC
Confidence 3579999999999999 6678999999999999998643 34567889999999999999888777654 559
Q ss_pred ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-C-c-eeEEECCCCcEEE
Q 021648 78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-G-R-PAAAYDDQGLVFA 154 (309)
Q Consensus 78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~ 154 (309)
++|.+||+.+|+.+-++. |.+.|.+++|+.||..|+|.+.|+.||+||.+++..+..-..+ + + .-+.+-.++.+++
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999988888 9999999999999999999999999999999999877654211 1 2 2244555666888
Q ss_pred EEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCe
Q 021648 155 VAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 155 ~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~ 216 (309)
+++ +..+-+||..+.+.+ .....+... +.+.-==+.+|-.+ .++|-.|+.|+-|......
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP-~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEP-IALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCc-ceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 775 478999998887654 333333221 22222224666554 4677789999999875533
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.7e-21 Score=164.60 Aligned_cols=258 Identities=14% Similarity=0.258 Sum_probs=188.1
Q ss_pred ceEEEEeCCCCCE-EEEeeCCCcEEEEEcC--CCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648 13 RISSMDFHKSSSY-LVTASDDESIRLYDVT--AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 87 (309)
Q Consensus 13 ~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~ 87 (309)
.++++.|+....+ +++-+.|..+++|.=. +++. +....+. ...|+++.....++++ +|..+.|++||+..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~s---gG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEIS---GGQSGCVKIWDLRA 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeec---cCcCceeeehhhHH
Confidence 3889999876532 3555579999999643 2222 2223333 2334444444445554 45688999999998
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-Cce--eEEECCCCc-EEE-EEECCEEE
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRP--AAAYDDQGL-VFA-VAFGGYIR 162 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~~-~~~~~~i~ 162 (309)
..+.+.+++|++.|+++.++-...++++++.-|.|.+..+.++.....+... +.. ...|++..+ ++. ++.+|.+.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 7788999999999999999988889999999999999998887665555443 222 245555443 333 34579999
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
+||+.... +.+. -...|..+...|||||.. .+|++-+.|.+|++||.........+.. ..+...++|+|+|.
T Consensus 191 lwDv~g~s-p~~~--~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 191 LWDVQGMS-PIFH--ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGT 263 (673)
T ss_pred EEeccCCC-cccc--hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCce
Confidence 99986533 2221 223456678889999976 5677789999999999987665554432 24566899999999
Q ss_pred EEEEEcCCCcEEEEECCCC-ceEEEeecCCCCCcEEEECCCe
Q 021648 242 FVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGS 282 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~ 282 (309)
+|++|...|.|+.||++.. .+++.+..|...|++|+|-|.-
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999999864 4688899999999999997764
No 142
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=157.73 Aligned_cols=297 Identities=12% Similarity=0.176 Sum_probs=203.7
Q ss_pred EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC------Cceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCc
Q 021648 6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------ATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
.+.+|.+.|++|.|+.++++||+|+.|..+++|.++. .++|+.... |...+.+++|.....+++++ +-++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG---~~~~ 127 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG---ERWG 127 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC---CCcc
Confidence 4578999999999999999999999999999999863 345555444 34678899998776666654 3488
Q ss_pred eeEEEEccCCceEEEeeecc---cCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeeeeecCc----eeEEECC-C
Q 021648 79 SLRLLSLHDNKYLRYFKGHH---DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR----PAAAYDD-Q 149 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~~----~~~~~~~-~ 149 (309)
+|.+.|+++.+.+.++. |. +.|..+..+|-.+.|++.+.||.|.+||.+..+ ....+..... ..+.+.| .
T Consensus 128 ~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999988776664 44 489999999999999999999999999998765 3333322221 1233444 2
Q ss_pred CcEEEEE-ECCEEEEEECCCCCcCCce---EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-eEeEEeeec
Q 021648 150 GLVFAVA-FGGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVK 224 (309)
Q Consensus 150 ~~~~~~~-~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~ 224 (309)
..++++. ..+.+.+||.|....+-+. ...+......--.+.|+|+|..+.+---...-.+||..+. ..+-.+...
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 3455444 4578999999875443221 1111111122346789999998877655555556777652 222222100
Q ss_pred C-CC--CCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eEEEeecCCCCCcEEEE
Q 021648 225 P-VS--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-----------------------EVASWMSFDTEPPVIKW 278 (309)
Q Consensus 225 ~-~~--~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-----------------------~~~~~~~~~~~v~~l~~ 278 (309)
+ .. ...+-+++|- +.+.+++||.+-.|++|.+.... .+..+.+|.+-++.|.|
T Consensus 287 ~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 0 00 1123356675 44669999999999999986421 13346789999999999
Q ss_pred CCCeeEEEEccce--EEEeeecCCCccccccC
Q 021648 279 TPGSLMFVTGSSE--LSFWIPDLSKLGAYVGR 308 (309)
Q Consensus 279 ~p~~~~l~s~~~d--~~~~~~~~~~~~~~~~~ 308 (309)
+|-..+|++.+-+ .++|.+.. .++.+.|+
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS~~r-~P~~~D~~ 396 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWSDHR-LPWSYDLP 396 (609)
T ss_pred cCCcceEeccchhhheecccccc-CCcccCCc
Confidence 9999999887755 78887755 34666654
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=158.69 Aligned_cols=268 Identities=11% Similarity=0.162 Sum_probs=197.8
Q ss_pred EEEeeCCCc-EEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEE
Q 021648 26 LVTASDDES-IRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS 103 (309)
Q Consensus 26 l~t~s~D~~-v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~ 103 (309)
+.+++.|.. +++||+.+|...-++++. ......+. .-.+++++++... -..+-+|.+.........---.++|.+
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~-~l~~~yllsaq~~--rp~l~vw~i~k~~~~~q~~v~Pg~v~a 86 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLT-ALNNEYLLSAQLK--RPLLHVWEILKKDQVVQYIVLPGPVHA 86 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCcccccchhhh-hhchhheeeeccc--CccccccccCchhhhhhhcccccceee
Confidence 445555665 999999999988888765 22211111 1234566666542 457889988665433322235678999
Q ss_pred EEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--cCceeEEECCC-CcEEEEEECCEEEEEECCCC----Cc-CCce
Q 021648 104 LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQ-GLVFAVAFGGYIRMFDARKY----EK-GPFD 175 (309)
Q Consensus 104 v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~----~~-~~~~ 175 (309)
+.-+|+|.+|+.|.-.|.+.+|.+.++.....+.. +......+..+ ..+++++.||.|.+|.+... .. ....
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 99999999999988999999999999987766532 33344555554 46777788999999985321 11 2334
Q ss_pred EEEeCCCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648 176 IFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253 (309)
Q Consensus 176 ~~~~~~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~ 253 (309)
....+.|.-+|..+.+.+.| ..+.+.+.|.++++||+..+.++.++.. ...+.+++..|..+.++.|++||.|.
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcccccEEEecCCcceEE
Confidence 45556677778877776654 6789999999999999999999987753 35677899999999999999999999
Q ss_pred EEECCCC----------------ceEEEeecCCC--CCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648 254 AWSVRSG----------------KEVASWMSFDT--EPPVIKWTPGSLMFVTGSSELSFWIPDLS 300 (309)
Q Consensus 254 vwd~~~~----------------~~~~~~~~~~~--~v~~l~~~p~~~~l~s~~~d~~~~~~~~~ 300 (309)
+.++-.. +.+..+.+|.. +|+||+.+-||.+|++|+.|.++++||..
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9887432 23556778887 99999999999999999999888777764
No 144
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.7e-20 Score=151.38 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=167.4
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.|.+++.+.+|.++ ..+++|+.|+.||.+|+.+++. ..+..|..++.+++..+-...++++ +||++|++||....
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNK 126 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEc---ccCccEEEEecccc
Confidence 48999999999984 5778999999999999987654 3456678889999999766667754 68999999999865
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-----eeeecCceeEEECCCCcEEEEEECCEEEE
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGLVFAVAFGGYIRM 163 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (309)
.....+..- +.|.++... ++.|+.|..|..+.+||+++..... .++++.+....+.....+++++.+|.+.+
T Consensus 127 ~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 127 VVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred ccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 444444433 378877654 5788999999999999998654322 23344455556666667888888887765
Q ss_pred EECCCC---CcCCc--eEEEeCCC----CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 164 FDARKY---EKGPF--DIFSVGGD----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 164 ~d~~~~---~~~~~--~~~~~~~~----~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
=.+... ...++ .++..... ..+|++++|+|-...|++|+.||.|.+||+...+.+..+.. ....|..+
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~sl 280 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSISSL 280 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceEEE
Confidence 433221 01111 11111111 13789999999999999999999999999988887776542 23567889
Q ss_pred EECCCCCEEEEEcC
Q 021648 235 SFSPEGMFVISGSG 248 (309)
Q Consensus 235 ~~sp~g~~l~s~s~ 248 (309)
+|+.||..||.|+.
T Consensus 281 sfs~dG~~LAia~s 294 (323)
T KOG1036|consen 281 SFSMDGSLLAIASS 294 (323)
T ss_pred EeccCCCeEEEEec
Confidence 99999999999964
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=4.8e-18 Score=151.42 Aligned_cols=284 Identities=26% Similarity=0.464 Sum_probs=209.5
Q ss_pred EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-eeeeeecccc-ceeEEEE-ecCCCEEEEEcCCCCCceeEE
Q 021648 6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKY-GVDLVCF-TSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~~~s~~g~d~~i~~ 82 (309)
.+..|...|..+.|.+.+..++.++.|+.+.+|+...+. .+..+..... .+..+.+ .+++...+... ...|+.+++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS-SSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc-CCCCccEEE
Confidence 456899999999999999999999999999999998876 6666666443 4555555 66666334332 234889999
Q ss_pred EEccC-CceEEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeec--CceeEEECCCCc-EEEE-E
Q 021648 83 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGL-VFAV-A 156 (309)
Q Consensus 83 ~d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~-~ 156 (309)
||+.. ......+.+|...|..+.|+|+++.+++++. |+.+++|+.........+..+ ......+.+.+. +++. +
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99998 7788899999999999999999998888886 999999999876555555432 223345555554 5555 6
Q ss_pred ECCEEEEEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE-eEEeeecCCCCCccceE
Q 021648 157 FGGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~ 234 (309)
.|+.|++||.+... ... .+.++.... ...|+|++..+++++.|+.+++||...... +..+ ..+...+..+
T Consensus 219 ~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~ 290 (466)
T COG2319 219 SDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSV 290 (466)
T ss_pred CCCcEEEEECCCCc----EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEE
Confidence 78999999876321 122 344444443 338999999999999999999999876554 3333 2345677888
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEee--cCCCCCcEEEECCCeeEEEEc-cce--EEEeeec
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTG-SSE--LSFWIPD 298 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~s~-~~d--~~~~~~~ 298 (309)
.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.|++..++.+ ..| ..+|...
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 999999999999999999999998887766665 788789999994342444444 455 4444443
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=3.9e-21 Score=165.31 Aligned_cols=234 Identities=15% Similarity=0.215 Sum_probs=176.3
Q ss_pred ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc---eEEEe--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCC
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 129 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~---~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~ 129 (309)
-|..+.++.....++++. .+-|+|||+.... ++..+ ....+.|+++.++|||+.|++|+.-.++.|||+..
T Consensus 421 vVcAvtIS~~trhVyTgG----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGG----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEEecCCcceeEecC----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 355566666666666654 5679999996532 23333 23456799999999999999999999999999976
Q ss_pred ceeeeeeeecC--ce--eEEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC
Q 021648 130 EKCQGLLRVQG--RP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME 204 (309)
Q Consensus 130 ~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d 204 (309)
........+.. -. ....++ ....+++..||.|.+||+++. ..+-.+.|+...+.|+.+|+||..|.+|+.|
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 64322211111 11 122333 456778889999999999863 3456778899999999999999999999999
Q ss_pred CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeE
Q 021648 205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLM 284 (309)
Q Consensus 205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 284 (309)
.+||-||++.+..+..+.. ...|.++.+.|++.++|.|=+.+.+-|-.....+ -..+..|.+.|.+|.|.+-|++
T Consensus 573 ntvRcWDlregrqlqqhdF----~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDF----SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred cceeehhhhhhhhhhhhhh----hhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCce
Confidence 9999999999887765443 2456788899999999999999988888875433 3345568899999999999999
Q ss_pred EEEccce--EEEe-eecCCC
Q 021648 285 FVTGSSE--LSFW-IPDLSK 301 (309)
Q Consensus 285 l~s~~~d--~~~~-~~~~~~ 301 (309)
|++.+.| +..| .|....
T Consensus 648 fvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred eeecCchhhhhhccCccccc
Confidence 9999998 6667 455443
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.8e-20 Score=167.59 Aligned_cols=218 Identities=16% Similarity=0.253 Sum_probs=172.9
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
|...|.+++-. +.+|++|+.|++|.+|.+.+++.-..+.....++..++++.+|+.++.++. |..|++.++....
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s 129 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSS 129 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccc
Confidence 56667776654 459999999999999999988877667777778999999999999998875 8899999999999
Q ss_pred eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--------C--ceeEEECCC-CcEEEEEEC
Q 021648 90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------G--RPAAAYDDQ-GLVFAVAFG 158 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--------~--~~~~~~~~~-~~~~~~~~~ 158 (309)
..+.+++|.++|.+|.|+|++++||+.+-||+|++||+.++.+..++..- . .....++|+ +.+++...+
T Consensus 130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence 99999999999999999999999999999999999999988776555311 0 122466777 567777889
Q ss_pred CEEEEEECCCCCcCCceEEEeCC--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
+.|++|+....+. .+.+.. ..+.+..++|||+|+|||+++.||.|.|||..+-+. + .....|++++|
T Consensus 210 ~~Vkvy~r~~we~----~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~------~~~~~Vc~~aw 278 (933)
T KOG1274|consen 210 NTVKVYSRKGWEL----QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H------EFKRAVCCEAW 278 (933)
T ss_pred CeEEEEccCCcee----heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c------cccceeEEEec
Confidence 9999998765432 122221 223478899999999999999999999999987222 1 12356778899
Q ss_pred CCCCCEE
Q 021648 237 SPEGMFV 243 (309)
Q Consensus 237 sp~g~~l 243 (309)
-|+..-+
T Consensus 279 ~p~~n~i 285 (933)
T KOG1274|consen 279 KPNANAI 285 (933)
T ss_pred CCCCCee
Confidence 9987554
No 148
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=4e-22 Score=180.25 Aligned_cols=269 Identities=17% Similarity=0.275 Sum_probs=191.8
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.++.+.+|-.+|.|+.|+..|.+++||+.|+.+|||..+++.|+....+|...++.++.+.....++++| .|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS---~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS---NDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc---cCceEE
Confidence 44566789999999999999999999999999999999999999999999999999999887766666554 488999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee---eeecC---ceeEEECCCC-cEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQG---RPAAAYDDQG-LVFA 154 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~---~~~~~---~~~~~~~~~~-~~~~ 154 (309)
+|-+..+.++..+.||++.|++++|+|-- +.+.||++++||.+-...+.. +.... .....+...+ ...+
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999999999999999999999843 788999999999871111100 00000 1111222222 2333
Q ss_pred EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648 155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 233 (309)
Q Consensus 155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
+..++.-+.|.... +..+.....-+.++.|- .+.+++-.+-.+.+|++.+|.+.+.... +...+..
T Consensus 334 gs~d~ea~n~e~~~----------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g---hsd~~yv 400 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQ----------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG---HSDEVYV 400 (1113)
T ss_pred ccCCcccccchhhH----------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc---cccceee
Confidence 33445444444321 11121222333333332 3455666677888999999988775543 4456677
Q ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEEccce
Q 021648 234 ASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 234 ~~~sp-~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
+.++| +.+...+++.||...|||+-.+-+++.. .+|. .+..-+||+||+.++....-
T Consensus 401 Ld~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred eeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCC
Confidence 89999 5678889999999999999888776653 4544 56667788888776655443
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.4e-19 Score=156.52 Aligned_cols=279 Identities=14% Similarity=0.182 Sum_probs=211.4
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce-eeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
..+|.+++|+.+.+.||.+=.||.|-||++..+=+ ...+.++. ..+..+||++.+ .++++ |.++.|.-||+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~---g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSS---GLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEee---cCCceEEEEecccC
Confidence 46899999999999999999999999999986544 34556553 458999999544 45444 34889999999999
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec---C-ceeEEECCCCc-EEEEEECCEEEE
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---G-RPAAAYDDQGL-VFAVAFGGYIRM 163 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~---~-~~~~~~~~~~~-~~~~~~~~~i~~ 163 (309)
+++..+..-.+.|++++.+|.+..++.|+.||.+.+.+...+.......+. . .-...+.+++. ++.++.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 999999999999999999999999999999997777777666544322221 1 22456677776 677778999999
Q ss_pred EECCCCCcCCce---EEEeCC-CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 164 FDARKYEKGPFD---IFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 164 ~d~~~~~~~~~~---~~~~~~-~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
||......-... +..+.. ...-+.+|.|-.++ .+++|..-|+|.+||...+++++.+.. |...+.+++-+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC---HDADVLALAVADN 256 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh---hhcceeEEEEcCC
Confidence 998764321100 111111 22235566666666 478999999999999999999987664 5677889999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCce----EEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 240 GMFVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
+.++.++|.|+.|..+...+.+. ......|...+.+++..++ .+++|+.|..+....+
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 99999999999999999877543 2223467888999998887 8899999977765543
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.4e-19 Score=156.13 Aligned_cols=242 Identities=15% Similarity=0.172 Sum_probs=181.7
Q ss_pred cceEecCCCc-ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 3 VGMSFRDYNG-RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 3 ~~~~~~~h~~-~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.+.+.+|.+ .|.+++|++ +.+|.|.+.+|+|.-||+.+++++..+......+..+|.+|.++.+..++. |+.+.
T Consensus 60 ~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGvl~ 135 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGVLY 135 (691)
T ss_pred eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---CceEE
Confidence 3466777665 699999995 567889999999999999999999999888888999999999988888865 66777
Q ss_pred EEEccCCce--EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec-----C-ce----eEEECCC
Q 021648 82 LLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-----G-RP----AAAYDDQ 149 (309)
Q Consensus 82 ~~d~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-----~-~~----~~~~~~~ 149 (309)
.++...++. -..|...+++|.++.|+|++..+++|+.||.|++||...++......++ . .+ ++.+-.+
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd 215 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD 215 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence 777777653 2344456789999999999999999999999999999888776633322 1 22 2344567
Q ss_pred CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeE-eEEeeecCCCC
Q 021648 150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSR 228 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~ 228 (309)
+.++++.+.|+|.+||....+. +.....+..++.+++.++++.++.+++.|++|.-|...+... -........|.
T Consensus 216 ~tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~ 291 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSIFGTL----IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA 291 (691)
T ss_pred CcEEEecCCceEEEEcccCcch----hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence 7788777889999999776442 234445678899999999999999999999998887655432 11111112344
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEE
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYA 254 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~v 254 (309)
..+.+++..++ .+++|+.|.++.+
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEE
Confidence 55566666555 7777777766654
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8e-21 Score=165.41 Aligned_cols=259 Identities=24% Similarity=0.323 Sum_probs=184.8
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--------CCceeeeeeccccceeEEEEecCCCEEEEEcCCCC
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 76 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~ 76 (309)
.++..|...|..+.|.|...-|+||+.|+++++|++. .-+++.+|++|..+|.++++.++++.++++ |.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg---g~ 364 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG---GI 364 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee---cc
Confidence 3678899999999999999999999999999999993 235678899999999999999999988876 45
Q ss_pred CceeEEEEccCC----------ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee---cCcee
Q 021648 77 DESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---QGRPA 143 (309)
Q Consensus 77 d~~i~~~d~~~~----------~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---~~~~~ 143 (309)
|++|+.|++-.+ .....+.||.+.|+.+++++....|+++|.||++|.|+.....+ .++.. .+.+.
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999965321 12456889999999999999988999999999999999765544 12211 11111
Q ss_pred -EEECCCCcEEEEEECCEEEEEECCCCCc-CCceEEEeC---C--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648 144 -AAYDDQGLVFAVAFGGYIRMFDARKYEK-GPFDIFSVG---G--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 144 -~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~---~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~ 216 (309)
+.+......... .+...+.+++..++. ..+.++... + ....++-+.-.|.+.+..++..|++|+++|-.++.
T Consensus 444 svd~~ss~~a~~~-~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 444 SVDRTSSRPAHSL-ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred eEeeccchhHhhh-hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 111111000000 011111111111100 011111110 1 11356677788899999999999999999999998
Q ss_pred EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCC
Q 021648 217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT 271 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 271 (309)
.+..... |...+.++++-|+|-+|++++.|+.+++|.+....++.....|..
T Consensus 523 ~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cchheee---ccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 8876543 445677899999999999999999999999988888777666653
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.6e-20 Score=152.62 Aligned_cols=247 Identities=19% Similarity=0.304 Sum_probs=178.9
Q ss_pred CCcceEEEEeCCC----CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCCCCCceeEEEE
Q 021648 10 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 10 h~~~V~~i~~s~~----~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i~~~d 84 (309)
|..+...++|+-+ ..++|.||.=|-|||-|+.++++...+.+|...+..+-+.|+.. .++++|. |..||+|+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk---D~svRlwn 164 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK---DHSVRLWN 164 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC---CceEEEEe
Confidence 6777888888643 35789999999999999999999999999999999999999765 4555554 89999999
Q ss_pred ccCCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-------------cC--ceeEEE
Q 021648 85 LHDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-------------QG--RPAAAY 146 (309)
Q Consensus 85 ~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-------------~~--~~~~~~ 146 (309)
+++..++..|. ||.+.|.+++|++++.+++|++.|-++++|++...+....+.. +. ...-.+
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 99999998875 6999999999999999999999999999999874332111110 00 000000
Q ss_pred -----C---------CCCcEEEEEECCEEEEEECCCCCcC------Cce----EEEeCCCCCCCeE--EEEccCCCEEEE
Q 021648 147 -----D---------DQGLVFAVAFGGYIRMFDARKYEKG------PFD----IFSVGGDISDANV--VKFSNDGRLMLL 200 (309)
Q Consensus 147 -----~---------~~~~~~~~~~~~~i~~~d~~~~~~~------~~~----~~~~~~~~~~~~~--v~~s~dg~~l~~ 200 (309)
. -...+++-+-++.|..|..-+.... +-. +....-...++.- .+|.|-+++||.
T Consensus 245 st~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 0 0123454455789999987332211 100 0011111223333 356777899999
Q ss_pred EeCCCcEEEEECCCCeEe-EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 201 TTMEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 201 ~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
|...|.|++||++..+.. .+-..++.....|...+||-||..|+...+|++|--||..+
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 999999999999876552 22223444556778899999999999999999999999743
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.7e-20 Score=166.13 Aligned_cols=242 Identities=15% Similarity=0.236 Sum_probs=184.8
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCC--CEEEEEcCCCCCceeEEEEccCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
...|.+++.+|+|++||+|..-|++||||+...+.+..++.|...|.++.++... ..++++ ++-|.-|-+||+..+
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS--asrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS--ASRDRLIHVYDVKRN 536 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh--ccCCceEEEEecccc
Confidence 4578999999999999999999999999999988899999999999999998632 233332 234899999998764
Q ss_pred -ceEEEeeecccCEEEEEecCCC--CeEEEecCCCcEEEeeCCC---ceeeeeeeec--Cce---eEEECCC-CcEEEEE
Q 021648 89 -KYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRA---EKCQGLLRVQ--GRP---AAAYDDQ-GLVFAVA 156 (309)
Q Consensus 89 -~~~~~~~~h~~~v~~v~~~~~~--~~l~s~s~Dg~v~~Wd~~~---~~~~~~~~~~--~~~---~~~~~~~-~~~~~~~ 156 (309)
..+.++.+|...|++|.|...| ...+|++.|+.|.+=-.+. +... ....+ .+. -+..++. +.+++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-cccccccccceEEEeeeCCCcceEEEEe
Confidence 4577899999999999998765 6899999999987632210 1111 00001 111 1233443 4567778
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
.|..|++||+.+.++.+ ......++..+..-+...|.|-|+++...|+++.++|..+|+++.... .|...|..+.|
T Consensus 616 QDrnirif~i~sgKq~k-~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~---GHsE~VTG~kF 691 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVK-SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT---GHSEAVTGVKF 691 (1080)
T ss_pred cccceEEEeccccceee-eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc---Ccchheeeeee
Confidence 89999999998765321 122233344556677899999999999999999999999999987654 45567889999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCC
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
++|-++|++++.||+|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 99999999999999999999865
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=154.22 Aligned_cols=260 Identities=13% Similarity=0.160 Sum_probs=178.6
Q ss_pred EcCCCceeeeeeccccceeEEEEecCCC-EEEEEcCCCCCceeEEEEccCC----ceEEEeeecccCEEEEEecCC-CCe
Q 021648 39 DVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSS-KDC 112 (309)
Q Consensus 39 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i~~~d~~~~----~~~~~~~~h~~~v~~v~~~~~-~~~ 112 (309)
|+.+-.....+.-+...+.+++|+|..+ .++++. ..-++|-+||+.+. ..+..+..|..+|.++.|+|. ...
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~G--dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVG--DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEc--cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 3334444555666777899999999877 444432 22579999999432 246677889999999999984 568
Q ss_pred EEEecCCCcEEEeeCCCceeeeeeeecCceeEE----E-CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCe
Q 021648 113 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----Y-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN 187 (309)
Q Consensus 113 l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 187 (309)
+++.|.||+||+=|++......++......... + .....++.+..=|...+||.|.... . ...+..|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~--~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-E--YENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-c--chhhhhhhcccc
Confidence 999999999999999877655444442221111 1 1334555555445899999986432 1 223333445899
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEE-eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC----CCc
Q 021648 188 VVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----SGK 261 (309)
Q Consensus 188 ~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~----~~~ 261 (309)
.++++|.. .++++++.|++++|||++.-..... +.....|...|.++.|||+|..|+|-+.|..|+|||.. .-+
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 99999976 6788999999999999875332221 11122366788899999998889999999999999994 333
Q ss_pred eEEEeecCCCC------CcEEEECCCeeEEEEccc--eEEEeeecCCC-ccc
Q 021648 262 EVASWMSFDTE------PPVIKWTPGSLMFVTGSS--ELSFWIPDLSK-LGA 304 (309)
Q Consensus 262 ~~~~~~~~~~~------v~~l~~~p~~~~l~s~~~--d~~~~~~~~~~-~~~ 304 (309)
+..++ .|+.. +...+|.|+..+++.|-. .+.++...+++ +.+
T Consensus 407 p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 407 PLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred cccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 34443 34322 244789999999999875 36666666655 444
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=6.9e-20 Score=152.60 Aligned_cols=203 Identities=18% Similarity=0.310 Sum_probs=145.4
Q ss_pred ceeEEEEecCCCEEEEEcCCCCCceeEEEEccC----------------CceEEEeeecccCEEEEEecCC-CCeEEEec
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----------------NKYLRYFKGHHDRVVSLSLCSS-KDCFISGS 117 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~----------------~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s 117 (309)
.+..+...+-++..++++- ...+.|.|||+.. .+++.++.+|+..=.+++|+|- ...|+||.
T Consensus 153 ~~NRvr~~~~~~~~~~asw-se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASW-SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred ccceeeecccCCcceeeee-cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 3444444454444444432 2267899999852 1357888999999999999983 23588888
Q ss_pred CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-C
Q 021648 118 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-R 196 (309)
Q Consensus 118 ~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~ 196 (309)
.-+.|++|.+.++.... . .. ...+|...|..++.||.. .
T Consensus 232 c~~~I~lw~~~~g~W~v----d-------------------------------~~-----Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKV----D-------------------------------QR-----PFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred cccceEeeeeccCceee----c-------------------------------Cc-----cccccccchhhhccCCccCc
Confidence 88899999876543210 0 01 122355567788999965 6
Q ss_pred EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC---CceEEEeecCCCCC
Q 021648 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS---GKEVASWMSFDTEP 273 (309)
Q Consensus 197 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~v 273 (309)
.|++++.||.|+|||++.+........+ .|..-|..+.|+-.-.+||+|++||+++|||++. ++++++|..|.++|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEee-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 7889999999999999987433222222 3556788899998877999999999999999975 56799999999999
Q ss_pred cEEEECCCe-eEEEEccceEEEeeecC
Q 021648 274 PVIKWTPGS-LMFVTGSSELSFWIPDL 299 (309)
Q Consensus 274 ~~l~~~p~~-~~l~s~~~d~~~~~~~~ 299 (309)
++|.|+|.. ..|+.++.|-++-+|||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEe
Confidence 999999964 56666666744444444
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=152.54 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=163.8
Q ss_pred CCEEEEeeCCCcEEEEEcCCC---ceeee------------------eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 23 SSYLVTASDDESIRLYDVTAA---TCLKT------------------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~---~~~~~------------------~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
|+++|.|..|..|-|||++=. .+..+ -.+|...|..+++...-..++++ ++.|.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS--gsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS--GSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe--cCCCceEE
Confidence 689999999999999998521 11111 12455566666666655555554 34599999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeee-eeeecCc-eeEEECC--CCcEEEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGR-PAAAYDD--QGLVFAVA 156 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~-~~~~~~~--~~~~~~~~ 156 (309)
+||+.++++..++..|.+.|.++.|+|. ...|++||.|++|++.|.|...+.. ..+..+. -.....+ ...++++.
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 9999999999999999999999999985 6689999999999999998533221 2222221 1223332 23455556
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
.||.++-+|+|+..+ .++++..|...|.++++++.- .++++++.|+.|++|+........... +...-+...+.+
T Consensus 350 ddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKLGRLHCFA 425 (463)
T ss_pred CCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccccceeecc
Confidence 789999999998653 366777778899999998764 567889999999999975432211111 001112233445
Q ss_pred ECCCC-CEEEEEcCCCcEEEEECCCCceEE
Q 021648 236 FSPEG-MFVISGSGDGSVYAWSVRSGKEVA 264 (309)
Q Consensus 236 ~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~ 264 (309)
+.|+- -++|.||.-+.++|||+.+...+.
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhHH
Confidence 66664 567777888889999998876654
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.5e-19 Score=145.41 Aligned_cols=235 Identities=14% Similarity=0.202 Sum_probs=167.9
Q ss_pred eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee
Q 021648 56 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 135 (309)
Q Consensus 56 v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~ 135 (309)
..++.|++-|.+++.+.. ||.+-+||+.+...-+.+.+|..+|.+++|++||+.|+|+|.|-.|.+||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 567889999999998876 77999999999888888999999999999999999999999999999999999988777
Q ss_pred eeecCc-eeEEECC--CCcEEEEEECCEEEEEECCCCCcCCceEEEeCC--C-CCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648 136 LRVQGR-PAAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--D-ISDANVVKFSNDGRLMLLTTMEGHIHV 209 (309)
Q Consensus 136 ~~~~~~-~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~-~~~~~~v~~s~dg~~l~~~~~dg~v~i 209 (309)
++...- ..+.+.| ....+++-.+..-.+.++... .-.++.... . ........|.+.|+++.+|...|.+.+
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 765431 2233333 233444444433334443321 101111110 0 011223358899999999999999999
Q ss_pred EECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc------eEE---Eee--cCCCCCcEEEE
Q 021648 210 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK------EVA---SWM--SFDTEPPVIKW 278 (309)
Q Consensus 210 ~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~------~~~---~~~--~~~~~v~~l~~ 278 (309)
+|..+-+++..+.... ...+-.+.|+-.|++++.-..|..||+|+++.-. .+. ++. -...+=.+++|
T Consensus 180 ~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 180 YDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred Eecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 9999999888877543 2456678899999999999999999999986311 111 110 11233466889
Q ss_pred CCCeeEEEEccce---EEEeeec
Q 021648 279 TPGSLMFVTGSSE---LSFWIPD 298 (309)
Q Consensus 279 ~p~~~~l~s~~~d---~~~~~~~ 298 (309)
+.+|.+++.++.- +++|.-.
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred cCCccEEEeccccceeEEEEecC
Confidence 9999999888763 6666543
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=7.6e-17 Score=143.66 Aligned_cols=288 Identities=25% Similarity=0.437 Sum_probs=206.7
Q ss_pred ceEecCCCc-ceEEEEe-CCCCC-EEEEeeC-CCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648 4 GMSFRDYNG-RISSMDF-HKSSS-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 4 ~~~~~~h~~-~V~~i~~-s~~~~-~l~t~s~-D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
...+.++.. .+..+.+ ++++. +++..+. |+.+++||... ......+..|...+..++|++++..++.++. .|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~ 178 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDG 178 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCC
Confidence 344555443 7777777 88887 5555555 99999999988 7888889999999999999999986665532 488
Q ss_pred eeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeee-eeeecCce-eEEECCCC-cEEE
Q 021648 79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRVQGRP-AAAYDDQG-LVFA 154 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~ 154 (309)
.+++|++..++.+..+.+|...|.++.|+|++. .+++++.|+.+++||...+.... .+...... ...+.+.+ .+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
T COG2319 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258 (466)
T ss_pred ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEE
Confidence 999999999888999999999999999999987 66666999999999987665554 23222211 22566665 4555
Q ss_pred EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
++.++.+++|+.+.... ......++...+.++.++|++..+++++.|+.+++||..+........ ...+...+..+
T Consensus 259 ~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (466)
T COG2319 259 GSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSL 334 (466)
T ss_pred ecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEE
Confidence 66789999999886543 122224456788899999999888888889999999988776665443 11233457778
Q ss_pred EECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEE-ccce--EEEeeecC
Q 021648 235 SFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GSSE--LSFWIPDL 299 (309)
Q Consensus 235 ~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s-~~~d--~~~~~~~~ 299 (309)
.|.|++..++.+ ..|+.+++|++............. .+..+.+++ ...... +..+ +.+|....
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLST 401 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEeccc
Confidence 884443566666 788999999998876333332222 278899999 533333 3444 66665443
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.8e-19 Score=150.54 Aligned_cols=245 Identities=14% Similarity=0.269 Sum_probs=186.8
Q ss_pred CCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCcee--eeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 10 YNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCL--KTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 10 h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
-..+|.+..|.|+|. .++++|.-..+..||+.+.+.. ..+.++. ..+.....++++++++.... .+.|.+.-.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLha 332 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHA 332 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehh
Confidence 357899999999998 8999999999999999887653 3444443 34667888899998887644 667999999
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEEEEC-CEE
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVAFG-GYI 161 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~i 161 (309)
.+++.+.+++ -.+.|.++.|++|++.|+.++.+|.|.+||++...++......+. ...+.+..+.++|++++ |-|
T Consensus 333 kT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 333 KTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred hhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence 9988887776 568899999999999999999999999999999988877765442 23455677778888876 889
Q ss_pred EEEECCCC--CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC--CCcEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648 162 RMFDARKY--EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237 (309)
Q Consensus 162 ~~~d~~~~--~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s 237 (309)
.|||..+- ...+.++..+..-...|+.+.|+||+++|+.++. +..+++.-..+.+....+......-+.+.+++||
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 99984321 1123333333333457899999999999987764 5678876665555444333222233467889999
Q ss_pred CCCCEEEEEcCCCcEEEEECC
Q 021648 238 PEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 238 p~g~~l~s~s~Dg~i~vwd~~ 258 (309)
|.|.++|.|-++|.+.+|.+.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 999999999999999999874
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=9e-19 Score=147.25 Aligned_cols=275 Identities=18% Similarity=0.239 Sum_probs=179.5
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC--------C-----C---ceeeeeeccccceeEEEEecCC
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------A-----A---TCLKTINSKKYGVDLVCFTSHP 65 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~ 65 (309)
|....|..|..+|+++.|+|+|++||||+.++.|.+|-.. + . ...+.+.+|...+..++|++++
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 5567889999999999999999999999999999999654 2 1 1123466777788899999999
Q ss_pred CEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEE
Q 021648 66 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 145 (309)
Q Consensus 66 ~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~ 145 (309)
..+++++. |+.+++||+..|.....+.+|...|..++|.|-++++++=|.|+..+..++...+..............
T Consensus 136 ~~l~s~s~---dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 136 NFLVSGSV---DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred ceeeeeec---cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 99998864 999999999999999999999999999999999999999999997776665433322211100000000
Q ss_pred ECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC----CCc-----EEEEECCCCe
Q 021648 146 YDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGH-----IHVLDSFRGT 216 (309)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~----dg~-----v~i~d~~~~~ 216 (309)
..+ ......++|.-++.+ +=...++|+|||.++++... .+. .++|+..
T Consensus 213 ~~~-------~e~~s~rLfhDeTlk-------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--- 269 (434)
T KOG1009|consen 213 FNE-------REGKSTRLFHDETLK-------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--- 269 (434)
T ss_pred cCC-------CCcceeeeeecCchh-------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc---
Confidence 000 011234444322211 01234678899988886542 222 3444321
Q ss_pred EeEEee-ecCCCCCccceEEEC------------------CCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEE
Q 021648 217 LLSTYN-VKPVSRNSTLEASFS------------------PEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVI 276 (309)
Q Consensus 217 ~~~~~~-~~~~~~~~~~~~~~s------------------p~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l 276 (309)
.+.... .-+....+...+.|+ |.+..+|.+.. ..++|||.++.+++... .-|-..++.+
T Consensus 270 ~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDi 348 (434)
T KOG1009|consen 270 DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDI 348 (434)
T ss_pred cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecce
Confidence 111100 001111223333333 33444555554 56999999987775543 2355689999
Q ss_pred EECCCeeEEEEccce--EEEeeecCCCcc
Q 021648 277 KWTPGSLMFVTGSSE--LSFWIPDLSKLG 303 (309)
Q Consensus 277 ~~~p~~~~l~s~~~d--~~~~~~~~~~~~ 303 (309)
+|++||..|+..+-| |.+-..+..-||
T Consensus 349 aws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 349 AWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 999999988888877 555444444444
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=142.30 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=187.0
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
-..++.|.+.|+++.|..++ +|.+|..-|.|++|++.+......++ .+...++.+...|++ .+.+ .|-|..+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~t---qgRd~~L~l 81 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDT---QGRDPLLIL 81 (323)
T ss_pred eeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhh---cCCCceEEE
Confidence 35678999999999999876 48899999999999999988888887 445556666655553 2322 355899999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCC-cEEEeeCCCcee----------eeeee----ec-CceeEEE
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKC----------QGLLR----VQ-GRPAAAY 146 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-~v~~Wd~~~~~~----------~~~~~----~~-~~~~~~~ 146 (309)
|++.-+..+.. |.-.++++.|++-. +...+... ....++-+.... ...+. .. .-...+.
T Consensus 82 w~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 82 WTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 99987765443 55667777777532 22222111 111111111000 00000 00 0011122
Q ss_pred C----CCC-cEEEEEE-CCEEEEEECCCCCc------CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648 147 D----DQG-LVFAVAF-GGYIRMFDARKYEK------GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 147 ~----~~~-~~~~~~~-~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~ 214 (309)
. +.. .++.+++ +|.+-+||+...+. ....+.....+..++.++.+.+.-..=++++.+.++..|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 1 222 3444444 68999999876311 1112233344566788888887666667788888888887643
Q ss_pred --CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceE
Q 021648 215 --GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL 292 (309)
Q Consensus 215 --~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~ 292 (309)
+.+....+.. ..+..+..+..-||++.+||+|.|+.||||+.++.++++.++.|++.+++++|+|+..+++.+++|.
T Consensus 237 s~gslq~~~e~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 237 STGSLQIRKEIT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred ccCcccccceEE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 3332221111 1223456788999999999999999999999999999999999999999999999999999999996
Q ss_pred EEeeecC
Q 021648 293 SFWIPDL 299 (309)
Q Consensus 293 ~~~~~~~ 299 (309)
++=.|+|
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 6655543
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=2e-18 Score=148.64 Aligned_cols=262 Identities=16% Similarity=0.247 Sum_probs=176.6
Q ss_pred eeCCCcEEEEEcCCCceeeeeecccc--ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC--ce--EEEeeecccCEE
Q 021648 29 ASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KY--LRYFKGHHDRVV 102 (309)
Q Consensus 29 ~s~D~~v~iWd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~--~~--~~~~~~h~~~v~ 102 (309)
+|...+++|||+...+..-.+..+.. ++..++|..... +++++.+| |..+++|--... +. +....|- .-.
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~g-dk~~~~~~K~g~~~~Vp~~~k~~gd--~~~ 83 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAG-DKVMRIKEKDGKTPEVPRVRKLTGD--NAF 83 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCC-ceeEEEecccCCCCccceeeccccc--hHH
Confidence 33335789999987665555444332 366677765443 55555544 899999964332 21 2222222 334
Q ss_pred EEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCCcEEEEEE-CCEEEEEECCCCCcCCceEEEe
Q 021648 103 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSV 179 (309)
Q Consensus 103 ~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~ 179 (309)
||.......++++|+..+.|+|||++...+...++-+. ...+.|.....+++... +|.|.+-.+..... ...+..
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~~ 161 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFTI 161 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--ccceec
Confidence 44444556899999999999999998666555554333 33456777777776654 67888887664322 111222
Q ss_pred CCCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEEC
Q 021648 180 GGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 180 ~~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~ 257 (309)
. ....++-+.|||..+.+ .+++.+|.|.+||......+..+. ..|..+...++|+|. ...|++.|.|..|++||+
T Consensus 162 ~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 162 D-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred C-CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 1 11245678999988765 457889999999987666554332 346667778999995 578899999999999999
Q ss_pred CCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648 258 RSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300 (309)
Q Consensus 258 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~ 300 (309)
+..+....+ ....+.+.|+|+|+|.+|+.|.+-.++..-|+.
T Consensus 239 ~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 239 RSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred cccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 876665555 456789999999999999999987666555543
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=4.3e-18 Score=151.27 Aligned_cols=268 Identities=16% Similarity=0.236 Sum_probs=198.6
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 92 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~ 92 (309)
.|..++|-|||..|+.+. |..+-|||.+.|..++++.+|+..|.+++++.+|+.++++++ |..|-+|+.+-...++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccceee
Confidence 899999999999888775 457899999999999999999999999999999999987764 8999999865433222
Q ss_pred EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE-ECCEEEEEECCCCCc
Q 021648 93 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEK 171 (309)
Q Consensus 93 ~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~ 171 (309)
-.|.+.|-++.|+|-...|+|++-. ..-+|..+...............+...++|.+++.+ .+|+|.+=+-. ..
T Consensus 90 --YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gE 164 (1081)
T KOG1538|consen 90 --YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GE 164 (1081)
T ss_pred --eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC--CC
Confidence 2499999999999988899999854 567898765443322222233456777899999888 47888875422 12
Q ss_pred CCceEEEeCCCCCCCeEEEEccCCC-----EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 172 GPFDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 172 ~~~~~~~~~~~~~~~~~v~~s~dg~-----~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
+...+...+|..+++.+++++|... .++...=..++..+.+ +|+.+..-.. ..-...++.+-|+|.|++.|
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~---L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRA---LNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccccc---CCCCchhheeccCCcEEEEc
Confidence 3344556677888999999999653 2333333333333332 3444331110 11223467899999999999
Q ss_pred cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 247 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 247 s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
|.|+.+++|.. .|-.+.+.-....-|..++.+|+++..+.|+.|.++
T Consensus 241 Gsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 241 GSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred cCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 99999999977 566777777778899999999999999999998665
No 164
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.3e-17 Score=134.43 Aligned_cols=246 Identities=15% Similarity=0.270 Sum_probs=166.0
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc----eEEEeeecccCEEEEEecC-C-CCeEEEecCCCcEEE
Q 021648 51 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS-S-KDCFISGSLDRTVLL 124 (309)
Q Consensus 51 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~----~~~~~~~h~~~v~~v~~~~-~-~~~l~s~s~Dg~v~~ 124 (309)
+|+.-+.++.|.+.|..++++|+ |+++++||.+... +....+.|.+.|+.|.|.+ . |+.++++|.|+++++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 45666889999999999999986 8899999976543 4455678999999999974 3 889999999999999
Q ss_pred eeCC--Cc-----eeeeeeeec-C---ceeEEECC--CCcEE-EEEECCEEEEEECCCCC-c------CCce--EEEeCC
Q 021648 125 WDQR--AE-----KCQGLLRVQ-G---RPAAAYDD--QGLVF-AVAFGGYIRMFDARKYE-K------GPFD--IFSVGG 181 (309)
Q Consensus 125 Wd~~--~~-----~~~~~~~~~-~---~~~~~~~~--~~~~~-~~~~~~~i~~~d~~~~~-~------~~~~--~~~~~~ 181 (309)
|.=. +. +-+....+. . ...+.|.| -+..+ +++.||.+|||+....- . ..+. ....+.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9721 11 111111111 1 11234444 34444 45579999999854211 0 0011 001122
Q ss_pred CCCCCeEEEEccC---CCEEEEEeCC-----CcEEEEECCCCe-EeEEeeecCCCCCccceEEECCC-C---CEEEEEcC
Q 021648 182 DISDANVVKFSND---GRLMLLTTME-----GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE-G---MFVISGSG 248 (309)
Q Consensus 182 ~~~~~~~v~~s~d---g~~l~~~~~d-----g~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~-g---~~l~s~s~ 248 (309)
+.....|+.++|. ..+|+.|+.+ +.+.||....+. .......-+.+..+|.+++|.|+ | ..||+|+.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 3345677777764 3567777776 478888754432 22222212356778999999996 3 57899999
Q ss_pred CCcEEEEECCCC--------------------ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecCC
Q 021648 249 DGSVYAWSVRSG--------------------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 300 (309)
Q Consensus 249 Dg~i~vwd~~~~--------------------~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~ 300 (309)
|| |+||.+... +.+..+..|+++|..+.|+=.|..|++.+.| +++|-....
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 99 999999731 1355577899999999999999999999998 677754443
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-19 Score=154.20 Aligned_cols=290 Identities=19% Similarity=0.297 Sum_probs=210.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCC--EEEEEcCCCCCc
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT--TVIYSSKNGWDE 78 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~s~~g~d~ 78 (309)
.+...|..|.|.|+.|.|+..|..|+|||.|..|.+||-..+.....+. +|...|....|-|... .++.++. |+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~---dg 209 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR---DG 209 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc---cC
Confidence 4567788999999999999999999999999999999998887765554 5665566566766432 4555443 88
Q ss_pred eeEEEEcc-CCc--eEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecC--c------eeEEE
Q 021648 79 SLRLLSLH-DNK--YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--R------PAAAY 146 (309)
Q Consensus 79 ~i~~~d~~-~~~--~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~------~~~~~ 146 (309)
++|+=.+- ++. .++.+..|.++|..++.-|+ .+.|.|++.|+.+.-.|++.......+.... . ...+.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99988753 332 25567789999999999886 4579999999999999998776554432211 1 11222
Q ss_pred CCC-CcEEE-EEECCEEEEEECCCCCcC----Cce----EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648 147 DDQ-GLVFA-VAFGGYIRMFDARKYEKG----PFD----IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 147 ~~~-~~~~~-~~~~~~i~~~d~~~~~~~----~~~----~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~ 216 (309)
.|. ...++ .+.|...++||.|..... .++ ...+......|.+++|+.+|.-+++.=.|..|++|....+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 332 23444 456889999998865432 111 11122334578999999998888888889999999643221
Q ss_pred E------------eEE-eeecCCCCC--ccceEE-ECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648 217 L------------LST-YNVKPVSRN--STLEAS-FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 280 (309)
Q Consensus 217 ~------------~~~-~~~~~~~~~--~~~~~~-~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p 280 (309)
- ... |. .|.+ .|-.+- |.|...|+++||+-|.|.||+-.+++.+.-+.+-..-|+||.-||
T Consensus 370 G~~p~~~s~~~~~~k~vYK---GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYK---GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred CCCCCCCcchhhccchhhc---ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 1 111 22 2332 233443 689999999999999999999999999888877777899999999
Q ss_pred CeeEEEEccc--eEEEeee
Q 021648 281 GSLMFVTGSS--ELSFWIP 297 (309)
Q Consensus 281 ~~~~l~s~~~--d~~~~~~ 297 (309)
-...||+.+- |+++|.|
T Consensus 447 ~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 447 HLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCchhhccCCccceeeecC
Confidence 9999999886 5999988
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1e-15 Score=134.29 Aligned_cols=268 Identities=11% Similarity=0.129 Sum_probs=166.3
Q ss_pred EEEeeCCCcEEEEEcCC-Cc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-Cce--EEEeeeccc
Q 021648 26 LVTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--LRYFKGHHD 99 (309)
Q Consensus 26 l~t~s~D~~v~iWd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~~~--~~~~~~h~~ 99 (309)
.++...|++|++||+.+ ++ .++++... .....++++|+++.++++.. .++.|.+|++.. ++. +... ...+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-~~~~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~-~~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP-GQVQPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAES-PLPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC-CCCccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeee-cCCC
Confidence 45567899999999964 33 44555432 34567899999998877643 267899999863 332 1211 1334
Q ss_pred CEEEEEecCCCCeEEEecC-CCcEEEeeCCCce-e---eeeeee-cCceeEEECCCCcEEE-EE-ECCEEEEEECCCCCc
Q 021648 100 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK-C---QGLLRV-QGRPAAAYDDQGLVFA-VA-FGGYIRMFDARKYEK 171 (309)
Q Consensus 100 ~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~i~~~d~~~~~~ 171 (309)
....+.++|+++++++++. ++.+.+||+.+.. . ...+.. .......+++++..+. +. .++.|.+||+.....
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 5678999999998887764 8899999986322 1 111111 1112345677765443 33 358999999865211
Q ss_pred C-C--ceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCC--Ce--EeEEeeecCC---CCCccceEEECCCC
Q 021648 172 G-P--FDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GT--LLSTYNVKPV---SRNSTLEASFSPEG 240 (309)
Q Consensus 172 ~-~--~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~--~~--~~~~~~~~~~---~~~~~~~~~~sp~g 240 (309)
- . ....... .......++|+|||+++.+... ++.|.+||... ++ .+.++...+. .......+.|+|+|
T Consensus 161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 0 0 0001111 1134567899999999877655 89999999863 33 2333322111 11122358899999
Q ss_pred CEEEEEc-CCCcEEEEECCCCceEEEeecC---CCCCcEEEECCCeeEEEEccc-e--EEEeeec
Q 021648 241 MFVISGS-GDGSVYAWSVRSGKEVASWMSF---DTEPPVIKWTPGSLMFVTGSS-E--LSFWIPD 298 (309)
Q Consensus 241 ~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~~p~~~~l~s~~~-d--~~~~~~~ 298 (309)
++++++. .++.|.+|++.......++.++ ...+..++++|+++.|.++.. + +.+|..+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999985 4789999999653321222222 124668999999987776554 3 6777654
No 167
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2e-17 Score=149.80 Aligned_cols=220 Identities=14% Similarity=0.168 Sum_probs=155.5
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCC---cEEEEEcCCCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~---~v~iWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+++..|...+.+.+|+|||++|+.++.+. .|.+||+.+++. +..+.++ ....+|+|+++.+++++.. ++.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~--~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSK--DGV 271 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEec--CCc
Confidence 45667888899999999999999988653 699999988754 3334433 3357999999998886532 444
Q ss_pred e--EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648 80 L--RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 156 (309)
Q Consensus 80 i--~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
+ .+||+.+++ ...+..|...+....|+|||+.++.++ .++..++|++......
T Consensus 272 ~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----------------------- 327 (429)
T PRK01742 272 LNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----------------------- 327 (429)
T ss_pred EEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------------------
Confidence 4 455666655 455666777888999999999766554 6788888875322100
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
.++ . . ... ....+||||+.++..+.++ +.+||+.++....... . .......|
T Consensus 328 ----~~~-------------l--~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~--~---~~~~~~~~ 379 (429)
T PRK01742 328 ----ASL-------------V--G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS--T---FLDESPSI 379 (429)
T ss_pred ----eEE-------------e--c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC--C---CCCCCceE
Confidence 000 0 0 000 1346899999998887765 5569998876543211 1 11235789
Q ss_pred CCCCCEEEEEcCCCcEEEEEC--CCCceEEEeecCCCCCcEEEECCC
Q 021648 237 SPEGMFVISGSGDGSVYAWSV--RSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
+|||++|+.++.++.+++|++ .+++.+..+..|++.+..++|||-
T Consensus 380 sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 380 SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999999999999999998886 357778888888888999999984
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2e-17 Score=135.86 Aligned_cols=285 Identities=14% Similarity=0.291 Sum_probs=192.1
Q ss_pred ecCCCcceEEEEeCC-----CCCEEEEeeCCCcEEEEEcCC-C--ceeeeeec--cccceeEEEEecCC---CEEEEEcC
Q 021648 7 FRDYNGRISSMDFHK-----SSSYLVTASDDESIRLYDVTA-A--TCLKTINS--KKYGVDLVCFTSHP---TTVIYSSK 73 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~-----~~~~l~t~s~D~~v~iWd~~~-~--~~~~~~~~--~~~~v~~~~~~~~~---~~~~~~s~ 73 (309)
..+|+.+|..+.|++ +-..+||+|.+ .+-+|.... + ..++.+.. ++....-++++-+. +-++++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-- 110 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-- 110 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe--
Confidence 357999999999984 23567777754 778888763 2 23344432 22233344544322 223322
Q ss_pred CCCCceeEEEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee-cC----ceeEEEC
Q 021648 74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV-QG----RPAAAYD 147 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~~----~~~~~~~ 147 (309)
+|.-+.||+.|+.+++..+.+.+|-..|+.+.++|+ .++++++|.|.+||+|++++..|+..+.. .+ ..++.++
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 245789999999999999999999999999999996 57999999999999999999999877632 11 2234555
Q ss_pred CCC-cEEEEEECCEEEEEECCCCC----------------cCCc-------eEE-EeCCCCCCCeEEEEccCCCEEEEEe
Q 021648 148 DQG-LVFAVAFGGYIRMFDARKYE----------------KGPF-------DIF-SVGGDISDANVVKFSNDGRLMLLTT 202 (309)
Q Consensus 148 ~~~-~~~~~~~~~~i~~~d~~~~~----------------~~~~-------~~~-~~~~~~~~~~~v~~s~dg~~l~~~~ 202 (309)
.++ .+++++.|..|++|++...+ ..++ ..+ +-..|...|-|+.|- |.++++-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence 544 56677889999999976210 0011 111 111222333333332 57889999
Q ss_pred CCCcEEEEEC-CCCeEe-------------EEeeecCCCCCccc--eEEECCCCCEEEEEcCCCcEEEEECCCCceE--E
Q 021648 203 MEGHIHVLDS-FRGTLL-------------STYNVKPVSRNSTL--EASFSPEGMFVISGSGDGSVYAWSVRSGKEV--A 264 (309)
Q Consensus 203 ~dg~v~i~d~-~~~~~~-------------~~~~~~~~~~~~~~--~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~--~ 264 (309)
-++.|..|.. .-.+.+ .++.. ....++ .-+|.|-++.||.|...|.+++||++..++. .
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~---~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDY---PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEecc---CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 9999999986 212221 11111 122233 3456778999999999999999999887663 2
Q ss_pred EeecC--CCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 265 SWMSF--DTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 265 ~~~~~--~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
++..+ .+.|...+|+-|+..|+..+.|..+|-|+.
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22222 346778999999999999999999998874
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.1e-17 Score=146.86 Aligned_cols=291 Identities=16% Similarity=0.219 Sum_probs=191.5
Q ss_pred ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC---EEEEEcCCCCCceeEEE
Q 021648 7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLL 83 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~i~~~ 83 (309)
+.|-+..-..-.|++|+++++-. .+.+|+||.+.||+|++.+..|..++..+.+.+... +++.++. |++|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl---~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL---DGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec---CccEEEe
Confidence 34444445556789999888666 567999999999999999999999999888887665 3344443 8899999
Q ss_pred EccCCceEEEeeecccCEEEEEecC---CCCeEE-EecCCCcEE------------EeeCCCce--eeeeeee-cCceeE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFI-SGSLDRTVL------------LWDQRAEK--CQGLLRV-QGRPAA 144 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~-s~s~Dg~v~------------~Wd~~~~~--~~~~~~~-~~~~~~ 144 (309)
|...++.++++..+.. +.++.+.| +...++ .+..|..+. -..+.+.. ....+.. ......
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9999998888765432 22222211 111111 111222111 11110000 0000000 012234
Q ss_pred EECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC-eEeEEeee
Q 021648 145 AYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNV 223 (309)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~-~~~~~~~~ 223 (309)
.+.+.+.+.....+..+.+|...............-.|...+.++++||++++++++..||+|.+|.-... ..-.+...
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceE
Confidence 56677778888888999999876532110000001112334788999999999999999999999975431 11111111
Q ss_pred cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCcc
Q 021648 224 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 303 (309)
Q Consensus 224 ~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~~ 303 (309)
-+=|...|..++|++||.+|+|||.++.+-+|.+.+++ -.-++...+.|..+.+|||+...+...+|-++....++++.
T Consensus 247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred EEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 11244688999999999999999999999999999987 44467888999999999999988888888776665554443
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=148.58 Aligned_cols=234 Identities=18% Similarity=0.323 Sum_probs=171.5
Q ss_pred ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 134 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~ 134 (309)
.|..+||.|||..++.++ +..+.+||.+.|..+.+++||++.|.+|+|+.||+.|+||+.|+.|.+|..+ ...
T Consensus 14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEG 86 (1081)
T ss_pred chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccc
Confidence 577899999999998876 5689999999999999999999999999999999999999999999999743 333
Q ss_pred eeeecC---ceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEE
Q 021648 135 LLRVQG---RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 211 (309)
Q Consensus 135 ~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d 211 (309)
.++... ..+..+.|-...++++.=..--+|...... +... .....+.++++..||++++.|-.||+|.+-+
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-----V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-----VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh-----HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 443322 123455565555544433344566533211 0000 0123567888999999999999999999875
Q ss_pred CCCCeEeEEeeecCCCCCccceEEECCCC-----CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEE
Q 021648 212 SFRGTLLSTYNVKPVSRNSTLEASFSPEG-----MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 286 (309)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-----~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 286 (309)
. +++....+..+.....+++.++|+|.. ..++......++..+.+ +|+.+..-...+-.+-|+.+-|+|.++.
T Consensus 161 k-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 161 K-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred C-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEE
Confidence 3 455555555555667789999999953 46777777778888887 4566665455566678999999999999
Q ss_pred Eccce--EEEeeecCCCcc
Q 021648 287 TGSSE--LSFWIPDLSKLG 303 (309)
Q Consensus 287 s~~~d--~~~~~~~~~~~~ 303 (309)
.|++| ++++--+.-+||
T Consensus 239 iGGsdk~L~~fTR~GvrLG 257 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVRLG 257 (1081)
T ss_pred EccCCCceEEEeecCeEEe
Confidence 98887 666666655554
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.9e-17 Score=133.91 Aligned_cols=242 Identities=14% Similarity=0.254 Sum_probs=170.9
Q ss_pred eEecCCCcceEEEEeCCCC-CEEEEeeCC-------CcEEEEEcCC---------Cceeeeee-ccccceeEEEEecCCC
Q 021648 5 MSFRDYNGRISSMDFHKSS-SYLVTASDD-------ESIRLYDVTA---------ATCLKTIN-SKKYGVDLVCFTSHPT 66 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~-~~l~t~s~D-------~~v~iWd~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~ 66 (309)
+.|..|.++|..++-+|-. ++|+|+-.| ..+.||.+.. .+|+..+. .+...+.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4677899999999999954 556665442 3578998753 23344444 2234688999999999
Q ss_pred EEEEEcCCCCCceeEEEEccCCce-EEEe-----eecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648 67 TVIYSSKNGWDESLRLLSLHDNKY-LRYF-----KGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRV 138 (309)
Q Consensus 67 ~~~~~s~~g~d~~i~~~d~~~~~~-~~~~-----~~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~ 138 (309)
.+++.. |+.|.+|++..+.. +..+ .+|....++-.|+| |++.+++.+ |+++..||.|+.++...+.
T Consensus 137 klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~- 210 (370)
T KOG1007|consen 137 KLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE- 210 (370)
T ss_pred eeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh-
Confidence 998876 78999999987654 2222 23556677778888 566777765 8889999988665432221
Q ss_pred cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCe-
Q 021648 139 QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT- 216 (309)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~- 216 (309)
.. |...++.+.|+|+. .+|++++.||.|++||.++.+
T Consensus 211 ---------------------------------------dA--Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~ 249 (370)
T KOG1007|consen 211 ---------------------------------------DA--HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF 249 (370)
T ss_pred ---------------------------------------hh--hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc
Confidence 00 11235667788875 567889999999999987643
Q ss_pred EeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEECCCCc-----------------------------eEEEe
Q 021648 217 LLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGK-----------------------------EVASW 266 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~-----------------------------~~~~~ 266 (309)
.+.+. +.|...+++|.|+|. .+.|+|||.|..|.+|-..+-- .+.++
T Consensus 250 pv~el---~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 250 PVQEL---PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred ccccc---CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 33333 246678999999995 6889999999999999864310 13455
Q ss_pred ecCCCCCcEEEECCCee-EEEEccceEEEee
Q 021648 267 MSFDTEPPVIKWTPGSL-MFVTGSSELSFWI 296 (309)
Q Consensus 267 ~~~~~~v~~l~~~p~~~-~l~s~~~d~~~~~ 296 (309)
..|...|.+++||.... .|++=+.|.++-+
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 67888999999998765 6788888877643
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=6.2e-16 Score=128.98 Aligned_cols=237 Identities=16% Similarity=0.249 Sum_probs=170.6
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
-...+..+.|+++...|..|+.||. ++|..+.... .+.-....+..+..-.....++..+. ..-..+++.+++.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKT 79 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCc
Confidence 3456788889999999999999987 8888764332 11111223344443333444554443 223678899988877
Q ss_pred eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--C-ceeEE--ECCCCcEEEEE---ECCEE
Q 021648 90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G-RPAAA--YDDQGLVFAVA---FGGYI 161 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~-~~~~~--~~~~~~~~~~~---~~~~i 161 (309)
.+..+. ...+|.+|.++. ++|+.+-.+. |.++|+++-+..+++... + .-.++ .++.+.+++.- ..|.|
T Consensus 80 ~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 666654 556899998875 5677776554 999999998888776432 1 11223 33444566543 24899
Q ss_pred EEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-EEEEECCCCeEeEEeeecCCCCCccceEEECCCC
Q 021648 162 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 240 (309)
Q Consensus 162 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 240 (309)
.+||..+.+. +..+..|...+.+++|+++|.++|+++..|+ ||||....|..+.+|..... ...+.+++|+||+
T Consensus 156 ~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 156 VLFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDS 230 (391)
T ss_pred EEEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCC
Confidence 9999876542 3445567889999999999999999999996 78999999999999875433 4567889999999
Q ss_pred CEEEEEcCCCcEEEEECCC
Q 021648 241 MFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~ 259 (309)
++|++.|..++|+||.++.
T Consensus 231 ~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CeEEEecCCCeEEEEEecc
Confidence 9999999999999999865
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2.1e-15 Score=132.23 Aligned_cols=268 Identities=8% Similarity=0.082 Sum_probs=164.6
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEe-eCCCcEEEEEcC-CCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCc
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVT-AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~-s~D~~v~iWd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
++.++. +.+....+.++|++++|+.+ ..++.|.+|++. +++. +..... ......++++|+++.++++.. .++
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~--~~~ 102 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPTHISTDHQGRFLFSASY--NAN 102 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCceEEEECCCCCEEEEEEc--CCC
Confidence 344454 34667789999999987655 458899999986 3432 222221 123567899999998887753 278
Q ss_pred eeEEEEccC-Cc---eEEEeeecccCEEEEEecCCCCeEE-EecCCCcEEEeeCCCceeee-----eee--ecCc-eeEE
Q 021648 79 SLRLLSLHD-NK---YLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQG-----LLR--VQGR-PAAA 145 (309)
Q Consensus 79 ~i~~~d~~~-~~---~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~~~-----~~~--~~~~-~~~~ 145 (309)
.+.+|++.. +. .+..+. +......+.++|++++++ +...++.|.+||+.+..... ... .... ....
T Consensus 103 ~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred eEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 999999964 32 223232 234467788999998774 55667999999987632211 111 1111 2356
Q ss_pred ECCCCcEEEEEE--CCEEEEEECCCCCcCCce-EEEeCCC------CCCCeEEEEccCCCEEEEEe-CCCcEEEEECCCC
Q 021648 146 YDDQGLVFAVAF--GGYIRMFDARKYEKGPFD-IFSVGGD------ISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG 215 (309)
Q Consensus 146 ~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~-~~~~~~~------~~~~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~ 215 (309)
+.+++.++.+.. ++.|.+|++.... +.+. +..+... ......+.++|+|+++.++. .++.|.+|+....
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 778777665553 6899999986321 1111 1121110 11223588999999888874 4789999998543
Q ss_pred e-EeEEeeecCCCCCccceEEECCCCCEEEEEcC-CCcEEEEECC--CCce--EEEeecCCCCCcEEEE
Q 021648 216 T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVR--SGKE--VASWMSFDTEPPVIKW 278 (309)
Q Consensus 216 ~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~-Dg~i~vwd~~--~~~~--~~~~~~~~~~v~~l~~ 278 (309)
. .+......+. ......+.|+|||++|+++.. +++|.+|++. ++.. +..+.. ...+.+++|
T Consensus 261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence 2 1111111111 123456899999999998875 8999999884 3332 232322 344555554
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.4e-18 Score=147.14 Aligned_cols=226 Identities=18% Similarity=0.292 Sum_probs=158.7
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCC-EEEEEcCCCCCcee
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT-TVIYSSKNGWDESL 80 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i 80 (309)
+-+.|.||+|-|+++.|+.+|.+|+|||.|..+.|||.-.-+.++.+. +|...|.++.|.|... .++.+.. | |..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA-g-Dk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA-G-DKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc-C-cceE
Confidence 445688999999999999999999999999999999998888888886 5777799999998543 4443332 3 8999
Q ss_pred EEEEccC----------CceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeee-eeeecCceeEEECC
Q 021648 81 RLLSLHD----------NKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDD 148 (309)
Q Consensus 81 ~~~d~~~----------~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~~~~~~~~ 148 (309)
+++|+.+ .+.+..+.-|.++|..++-.|++ +.|.+++.||+++-+|++....-. ......
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~-------- 191 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS-------- 191 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH--------
Confidence 9999974 23456678899999999999987 799999999999999998653210 000000
Q ss_pred CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCC--------Ce---
Q 021648 149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR--------GT--- 216 (309)
Q Consensus 149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~--------~~--- 216 (309)
. +. ......-...++++||.. .+|+.|+.|--+++||.+. +.
T Consensus 192 ---~-------------l~----------ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~ 245 (758)
T KOG1310|consen 192 ---I-------------LV----------NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT 245 (758)
T ss_pred ---H-------------HH----------HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC
Confidence 0 00 000111224567888854 7788899999999999421 11
Q ss_pred -------EeEEeeecCC---C---CC---ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 021648 217 -------LLSTYNVKPV---S---RN---STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA 264 (309)
Q Consensus 217 -------~~~~~~~~~~---~---~~---~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~ 264 (309)
.+..|..... . .. .+.=+.|+|+|..|+..-....|+++|+..++...
T Consensus 246 ~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 246 CPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 1111111000 0 01 12336899999988887667789999998776543
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.6e-16 Score=146.33 Aligned_cols=283 Identities=15% Similarity=0.223 Sum_probs=187.6
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc---cceeEEEEecCC--CEEEEEcCCCCCceeEEEE-
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHP--TTVIYSSKNGWDESLRLLS- 84 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~---~~v~~~~~~~~~--~~~~~~s~~g~d~~i~~~d- 84 (309)
+++-..+.|+|=...++++..--.|+|||.+.++++..|..+. ..|+.+++-..- ..+++++. |+.||+|+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~---dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS---DGVIRIWKD 1140 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc---CceEEEecc
Confidence 3456678899988889888767799999999999887776554 347777776533 34566654 88999996
Q ss_pred ccCC--c--eEEE---eeecc----cCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeE----EECCC
Q 021648 85 LHDN--K--YLRY---FKGHH----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA----AYDDQ 149 (309)
Q Consensus 85 ~~~~--~--~~~~---~~~h~----~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~----~~~~~ 149 (309)
.... + .+.. +.++. +.-.-++|.....+|+++|.=+.||+||....++...+........ .....
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 4442 2 2221 22221 1112346766656777777789999999988877666654432211 12233
Q ss_pred CcEEEEE-ECCEEEEEECCCCCcC-CceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCeEeEEeeec--
Q 021648 150 GLVFAVA-FGGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVK-- 224 (309)
Q Consensus 150 ~~~~~~~-~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~-- 224 (309)
+.++++| .||.+++||.|..... ....+..+....+|.-+.+-+.|-. +++++.||.|++||++.......+..-
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 4555555 6899999998864331 1122222222234777788887654 999999999999999875333322221
Q ss_pred CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-------CCCCcEEEECCCeeEEEEccce--EEEe
Q 021648 225 PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-------DTEPPVIKWTPGSLMFVTGSSE--LSFW 295 (309)
Q Consensus 225 ~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~~~l~s~~~d--~~~~ 295 (309)
-.......++..+++...+|+|+. +.|.||++. |+.+..++.+ .+.+.|++|||-..++|.|+.| +.++
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 111224677889999999999999 999999995 5555444333 2456899999999999999877 6666
Q ss_pred eec
Q 021648 296 IPD 298 (309)
Q Consensus 296 ~~~ 298 (309)
..+
T Consensus 1379 s~~ 1381 (1387)
T KOG1517|consen 1379 SCE 1381 (1387)
T ss_pred ecC
Confidence 554
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.1e-17 Score=138.76 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=143.1
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648 15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 94 (309)
Q Consensus 15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~ 94 (309)
.+++|+++|..|+||+.||++|||+..+...+.....|...|..+.|+||++.+++.+. | ..+||+.+++-.+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence 67899999999999999999999999888888888888888999999999999988764 5 7999999998554443
Q ss_pred e--ecccCEEEEEecCCC-----CeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECC
Q 021648 95 K--GHHDRVVSLSLCSSK-----DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR 167 (309)
Q Consensus 95 ~--~h~~~v~~v~~~~~~-----~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 167 (309)
. .-......+.|+.|+ +.++....-+.|+.||+ .+|+-.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~----------------------------------~~w~~~ 269 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI----------------------------------SLWSGS 269 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------------------eeeccc
Confidence 3 122233444555444 11222222233333332 222210
Q ss_pred CCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648 168 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 247 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s 247 (309)
+.- .....-.....+++++.|+||++++.|+.||.|.|++..+.+.++.. +..|...|..+.|+||.+++++.|
T Consensus 270 ~~l----~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 270 NFL----RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred ccc----chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccc
Confidence 000 00000012246889999999999999999999999998876665543 345667889999999999999999
Q ss_pred CCCcEEEEECCC
Q 021648 248 GDGSVYAWSVRS 259 (309)
Q Consensus 248 ~Dg~i~vwd~~~ 259 (309)
.|..+.|..+.-
T Consensus 344 s~~~~~v~~l~v 355 (398)
T KOG0771|consen 344 SDNEAAVTKLAV 355 (398)
T ss_pred cCCceeEEEEee
Confidence 999998887743
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=8.7e-18 Score=157.30 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=182.7
Q ss_pred cceEEEEeCCCCCE----EEEeeCCCcEEEEEcCC---C---ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 12 GRISSMDFHKSSSY----LVTASDDESIRLYDVTA---A---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 12 ~~V~~i~~s~~~~~----l~t~s~D~~v~iWd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
...+.++|.+.+.. ||.|..||.|-+||... + +.+.+..-|...|..+.|++....++++. +-|++|.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG--a~~geI~ 142 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG--ADDGEIL 142 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc--CCCCcEE
Confidence 45778999887765 89999999999999864 2 23556778888999999999776444332 2388999
Q ss_pred EEEccCCceEEEe--eecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCc----eeEEECCCC--cE
Q 021648 82 LLSLHDNKYLRYF--KGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDDQG--LV 152 (309)
Q Consensus 82 ~~d~~~~~~~~~~--~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~~~~~~--~~ 152 (309)
+||++.-+.-..+ ..-.+.|.+++|+.. ...|++++.+|.+.+||++..+.+..+..... .....+++. .+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999875543333 235678999999975 45789999999999999998866554433221 234455543 45
Q ss_pred EEEEEC---CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC
Q 021648 153 FAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 228 (309)
Q Consensus 153 ~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 228 (309)
++++.| -.|.+||+|.-.. +. ..+.+|...+.++.+++.+ +++++++-|++|.+|+..+++.+.++-. ..
T Consensus 223 ~~As~dd~~PviqlWDlR~ass-P~--k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~ 296 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASS-PL--KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QG 296 (1049)
T ss_pred eeecCCCCCceeEeecccccCC-ch--hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---CC
Confidence 555443 3799999987543 22 3346777889999999876 8999999999999999999999987643 45
Q ss_pred CccceEEECCCC-CEEEEEcCCCcEEEEECCCCc
Q 021648 229 NSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 229 ~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
+.+..+.|.|.. ..+++++-||.|.|+.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 678899999965 588999999999999997653
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3e-17 Score=135.43 Aligned_cols=183 Identities=17% Similarity=0.218 Sum_probs=135.2
Q ss_pred CceeEEEEccCCceEEEeeecccCEEEEEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEEC--CC
Q 021648 77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYD--DQ 149 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~--~~ 149 (309)
.++|++||..+++.+..+++|...++.+.|.. ....+.+|+.||+||+||+|.......+..... +..+++ ..
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 56899999999999999999999999999986 456799999999999999998776655543332 233333 36
Q ss_pred CcEEEEEE-----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 150 GLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 150 ~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
+.+++++. +..+.+||+|+.++. +..+ ...|..+|++++|.|. ..+|++|+.||-|.+||+.....-..+..
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQL-LRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccch-hhhh-hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 67888774 468999999986542 2222 2346679999999995 58899999999999999865432221111
Q ss_pred cCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCCCc
Q 021648 224 KPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 224 ~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
.-.+...|..+.|..++ +.|.+-+.+++..+|++..+.
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 01123456678888776 568888889999999987654
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-15 Score=119.95 Aligned_cols=243 Identities=14% Similarity=0.220 Sum_probs=160.8
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc----eeeeee----ccc-----cceeEEEEecCCCEEEE
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTIN----SKK-----YGVDLVCFTSHPTTVIY 70 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~----~~~~~~----~~~-----~~v~~~~~~~~~~~~~~ 70 (309)
+..+++|.++|..++|. ..+|++|+ ||.|+=|.-...+ +...++ .+. -.+..+...|..+.++.
T Consensus 55 iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF 131 (325)
T ss_pred eeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence 34568999999999998 45777886 5999999765322 222221 111 12556677777777776
Q ss_pred EcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC
Q 021648 71 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 150 (309)
Q Consensus 71 ~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~ 150 (309)
+. | |+.+.-||+++|+..++++||++.|.++.--.....+.||+.||++|+||.+++++..++....+......+-+
T Consensus 132 Ag--G-D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 132 AG--G-DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred ec--C-CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 64 3 89999999999999999999999999998744455799999999999999999998877755433222111111
Q ss_pred cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc
Q 021648 151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 230 (309)
Q Consensus 151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 230 (309)
. .+-+++. +..++++| ....+.+|.+++.+....+.+. .+
T Consensus 209 ~---------------------------------wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfpip----a~ 248 (325)
T KOG0649|consen 209 K---------------------------------WIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFPIP----AR 248 (325)
T ss_pred c---------------------------------eeEEEec--cCceEEec-CCCceeEEeccCCCceEEEecc----cc
Confidence 1 1223333 34556555 4456789999988887776542 34
Q ss_pred cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC-eeEEEEccceEEEe
Q 021648 231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFW 295 (309)
Q Consensus 231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~~~d~~~~ 295 (309)
+-.+.| +...+++++....+.-|.+. |..-...+.-+.......|+-. -+.+..++.-+++.
T Consensus 249 v~~v~F--~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~ 311 (325)
T KOG0649|consen 249 VHLVDF--VDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLH 311 (325)
T ss_pred eeEeee--ecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeee
Confidence 445677 45688899988899999884 4443333332223444444333 34444455444444
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.7e-18 Score=157.65 Aligned_cols=272 Identities=15% Similarity=0.246 Sum_probs=182.7
Q ss_pred EEEeCCCCC-EEEEe----------eCCCcEEEEEcCC--Cc----eeeeeeccccceeEEEEecCCCE---EEEEcCCC
Q 021648 16 SMDFHKSSS-YLVTA----------SDDESIRLYDVTA--AT----CLKTINSKKYGVDLVCFTSHPTT---VIYSSKNG 75 (309)
Q Consensus 16 ~i~~s~~~~-~l~t~----------s~D~~v~iWd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g 75 (309)
.++|+|++. ++|+| |.+.++-||.+.. .+ ..-.+. ..+....++|.+.+.. ++++. .
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG--~ 87 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG--L 87 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc--c
Confidence 568999886 44443 3455667775542 22 111111 2345667888776554 45543 4
Q ss_pred CCceeEEEEccC---C---ceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeee---cC-ceeE
Q 021648 76 WDESLRLLSLHD---N---KYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV---QG-RPAA 144 (309)
Q Consensus 76 ~d~~i~~~d~~~---~---~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~---~~-~~~~ 144 (309)
.||.|-+||... + +.+..+..|++.|++++|++. ++.|++|+.||.|.|||+.....-..... .. ..+.
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 589999999754 2 246677889999999999986 55999999999999999865332212110 11 1112
Q ss_pred EECC-CCcEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCC---cEEEEECCC-CeE
Q 021648 145 AYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFR-GTL 217 (309)
Q Consensus 145 ~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg---~v~i~d~~~-~~~ 217 (309)
.... -..+++.+ ..+++-+||+|..+ +.++ +...+....+..++++|++ ..+++++.|. .|.+||++- ...
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~-ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKK-PIIK-LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCC-cccc-cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 2221 12455555 46799999999753 2222 2333333457889999987 4455555543 699999764 334
Q ss_pred eEEeeecCCCCCccceEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEccce--EE
Q 021648 218 LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSE--LS 293 (309)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d--~~ 293 (309)
+++++ .|...++++.|++.+ ++++|++.|+.|.+|+..+++.+.++..-..-+..+.|.|... .++.++-| +.
T Consensus 246 ~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 246 LKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 44443 466788999999966 9999999999999999999999999988777889999999876 56666656 44
Q ss_pred Ee
Q 021648 294 FW 295 (309)
Q Consensus 294 ~~ 295 (309)
++
T Consensus 323 I~ 324 (1049)
T KOG0307|consen 323 IY 324 (1049)
T ss_pred ee
Confidence 44
No 181
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5.1e-17 Score=138.18 Aligned_cols=206 Identities=14% Similarity=0.196 Sum_probs=145.2
Q ss_pred cCCCcceEEEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648 8 RDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 86 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~ 86 (309)
.+|+.+|.+++|+-. .+.|||||.|.||++||+++|+|..++..|...|..+.|+|....++.. +++|+++++.|.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs--Gs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLS--GSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEe--ccccceEEeeecc
Confidence 379999999999865 4689999999999999999999999999999999999999966554443 2469999999987
Q ss_pred CCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCc-eeeeeeeecC--ceeEEEC--CCCcEEEEEECCE
Q 021648 87 DNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYD--DQGLVFAVAFGGY 160 (309)
Q Consensus 87 ~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~ 160 (309)
...+....=.-.+.|-.+.|.|. ...++.+..||+++.+|+|.. ++...++.+. .....+. .++.+.+++.++.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 42221111123457788888875 457888899999999999976 6666665443 2334443 3455666677899
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeE
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL 217 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~ 217 (309)
+++|++............. ......|.++.|+- -.++.|+..+.++|||..+...
T Consensus 398 Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred EEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 9999986543221111111 11123445556654 4567778888899999876543
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.4e-17 Score=133.50 Aligned_cols=257 Identities=16% Similarity=0.265 Sum_probs=159.6
Q ss_pred ccceEecCCCcceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccc-eeEEEEec--CCCEEEEEcC-CC
Q 021648 2 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTS--HPTTVIYSSK-NG 75 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~~~~~s~-~g 75 (309)
..+..|++|.+.++.++|.. ....+.||+.||+||+||+.+......+...+++ -...||.. ....++++.. .+
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 35678899999999999976 4578999999999999999876555444333222 22344444 3334444321 13
Q ss_pred CCceeEEEEccCCce-EEEe-eecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeee----eeeecC-ceeEEEC
Q 021648 76 WDESLRLLSLHDNKY-LRYF-KGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG----LLRVQG-RPAAAYD 147 (309)
Q Consensus 76 ~d~~i~~~d~~~~~~-~~~~-~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~----~~~~~~-~~~~~~~ 147 (309)
.|..+.+||+...+. ++.+ ..|.+.|+++.|+| +.+.|+|||-||.|.++|++...... ++.... ...+.+.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 477899999987665 5443 67999999999999 46799999999999999987553322 222211 1223444
Q ss_pred CCC--cEEEEEECCEEEEEECCCCCcC-CceE--EEeCC---CCCCCeEE-EEcc-CCCEEEEEeC-CCcEEEEEC---C
Q 021648 148 DQG--LVFAVAFGGYIRMFDARKYEKG-PFDI--FSVGG---DISDANVV-KFSN-DGRLMLLTTM-EGHIHVLDS---F 213 (309)
Q Consensus 148 ~~~--~~~~~~~~~~i~~~d~~~~~~~-~~~~--~~~~~---~~~~~~~v-~~s~-dg~~l~~~~~-dg~v~i~d~---~ 213 (309)
.++ ++++...+....+|++...... .+.. ..... ..+.-..| +.+| +....+.++. -++..++-. .
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~ 300 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTS 300 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecc
Confidence 454 6888888999999987653210 0000 00000 00000111 2334 3344444444 455555432 3
Q ss_pred CCeEeEEee-ecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 214 RGTLLSTYN-VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
++..+.... .+..+...|.++.|...+.++.|||+||.+.+|..+
T Consensus 301 s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 301 SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 344333222 222344456678888889999999999999999963
No 183
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.7e-15 Score=134.86 Aligned_cols=223 Identities=13% Similarity=0.152 Sum_probs=150.0
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCCCceee--eeeccccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+++..+...+.+.+|+|||+.|+..+. +..+.+||+.+|+... .+.++ +...+|+|+++.+++......+..
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 344556678899999999999886653 4578999998876433 23332 345789999999887643222457
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC-CcEEEe--eCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-RTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 156 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-g~v~~W--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
|.+||+++++... +..+...+....|+|||+.|+..+.+ +...+| |+.++... .
T Consensus 269 I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~--------------------- 325 (429)
T PRK03629 269 LYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R--------------------- 325 (429)
T ss_pred EEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E---------------------
Confidence 9999998877544 44445567889999999988766643 444555 33222110 0
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecCCCCCccce
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLE 233 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
+ .. .........+||||+.++..+.+ ..|.+||+.+++... +.. . .....
T Consensus 326 ------l--------------t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~--~--~~~~~ 378 (429)
T PRK03629 326 ------I--------------TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD--T--FLDET 378 (429)
T ss_pred ------e--------------ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC--C--CCCCC
Confidence 0 00 00112346799999998876543 358889988776432 221 1 11235
Q ss_pred EEECCCCCEEEEEcCCCc---EEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 234 ASFSPEGMFVISGSGDGS---VYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 234 ~~~sp~g~~l~s~s~Dg~---i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
..|+|||++|+.++.|+. ++++++ +++....+..|.+.+...+|+|-
T Consensus 379 p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 379 PSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 689999999999998875 677777 46666777788888999999983
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=8.7e-16 Score=124.42 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=174.3
Q ss_pred ceEEEEeC--CC-CCEEEEeeC----CCcEEEEEc--CCCceeeee-eccccceeEEEEecCCC----EEEEEcCCCCCc
Q 021648 13 RISSMDFH--KS-SSYLVTASD----DESIRLYDV--TAATCLKTI-NSKKYGVDLVCFTSHPT----TVIYSSKNGWDE 78 (309)
Q Consensus 13 ~V~~i~~s--~~-~~~l~t~s~----D~~v~iWd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~~~~s~~g~d~ 78 (309)
.+.++.|+ |+ +.+||.||. .+.|.|-.+ ++++.+..- ..|.++++.+-|.|+.. .+++++ +.
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----~D 121 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----SD 121 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc----cC
Confidence 46788888 33 357888884 456666544 355554332 46889999999999874 244443 34
Q ss_pred eeEEEEccC--Cce--EEE-----eeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECC
Q 021648 79 SLRLLSLHD--NKY--LRY-----FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 148 (309)
Q Consensus 79 ~i~~~d~~~--~~~--~~~-----~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~ 148 (309)
.+|+|.+.. ++. ... -..+.+++++.+|+. +.+++.++|-|-++-+||++++... .++ ..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~vk----TQ----- 191 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TVK----TQ----- 191 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-cee----eE-----
Confidence 799998763 221 111 234667899999985 7889999999999999999876210 000 00
Q ss_pred CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeE-EeeecCC
Q 021648 149 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPV 226 (309)
Q Consensus 149 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~ 226 (309)
+ -.|...|..++|+.++ ..+++.+.||.||+||++..+--. .|+ .+.
T Consensus 192 ---L---------------------------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-~p~ 240 (364)
T KOG0290|consen 192 ---L---------------------------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-DPS 240 (364)
T ss_pred ---E---------------------------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec-CCC
Confidence 0 0133456778888866 578889999999999998644322 122 122
Q ss_pred CCCccceEEECCC-CCEEEEEcCCC-cEEEEECCC-CceEEEeecCCCCCcEEEECCC-eeEEEEccceEEEeeecCCCc
Q 021648 227 SRNSTLEASFSPE-GMFVISGSGDG-SVYAWSVRS-GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDLSKL 302 (309)
Q Consensus 227 ~~~~~~~~~~sp~-g~~l~s~s~Dg-~i~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~-~~~l~s~~~d~~~~~~~~~~~ 302 (309)
...+..+++|+++ -+++||-..|. .|.|-|++. ..++..+..|.+.|+.++|.|. ...+++++.|++.-.||+.-+
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 2456778999984 68999988875 799999986 4578899999999999999996 579999999999988888654
Q ss_pred c
Q 021648 303 G 303 (309)
Q Consensus 303 ~ 303 (309)
.
T Consensus 321 ~ 321 (364)
T KOG0290|consen 321 P 321 (364)
T ss_pred c
Confidence 3
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.2e-16 Score=139.66 Aligned_cols=272 Identities=17% Similarity=0.187 Sum_probs=169.3
Q ss_pred EEeCCCC--CEEEEeeCCCcEEEE--EcCCCc--------------------eeeeeeccccceeEEEEecCCCEEEEEc
Q 021648 17 MDFHKSS--SYLVTASDDESIRLY--DVTAAT--------------------CLKTINSKKYGVDLVCFTSHPTTVIYSS 72 (309)
Q Consensus 17 i~~s~~~--~~l~t~s~D~~v~iW--d~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s 72 (309)
|++-|.+ +..++...|.-.++| ++.... ...++..|...++.+.|.+...-++.++
T Consensus 234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s 313 (577)
T KOG0642|consen 234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS 313 (577)
T ss_pred ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence 4444433 456677777777888 432111 1124456666777888888777788776
Q ss_pred CCCCCceeEEEEccC--------CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc------e----eee
Q 021648 73 KNGWDESLRLLSLHD--------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE------K----CQG 134 (309)
Q Consensus 73 ~~g~d~~i~~~d~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~------~----~~~ 134 (309)
. |+++++|+++. -+++.+|.+|.++|.++++.+++..+.||+.||+|++|++-.+ . ...
T Consensus 314 e---d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 314 E---DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred c---ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 5 88999999932 1468899999999999999999999999999999999964311 1 001
Q ss_pred eeeecCce--eEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCC---CCeEEEEccCCCEEEEEeCCCcEE
Q 021648 135 LLRVQGRP--AAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIH 208 (309)
Q Consensus 135 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~v~~s~dg~~l~~~~~dg~v~ 208 (309)
.+...... ...++ ....++.++.||++++|+...... ..-+... .-.++.+ ....++-...+....
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~------~~f~~~~e~g~Plsvd~--~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP------CTFGEPKEHGYPLSVDR--TSSRPAHSLASFRFG 462 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCcCc------cccCCccccCCcceEee--ccchhHhhhhhcccc
Confidence 11111111 22333 233566666777777776543110 1111110 0011111 111111111111222
Q ss_pred ---EEECCCCeEeEEeeec--CCC--CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 209 ---VLDSFRGTLLSTYNVK--PVS--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 209 ---i~d~~~~~~~~~~~~~--~~~--~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
+.|......+..+... +.. ...+..+.++|.+.+.+++.+|+.|+++|..+++.+.....|...++++++.|+
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence 2222222222222111 111 123446778899999999999999999999999999999999999999999999
Q ss_pred eeEEEEccceEEEeeecC
Q 021648 282 SLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 282 ~~~l~s~~~d~~~~~~~~ 299 (309)
|..|.+++.|+++..|.+
T Consensus 543 g~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CceEEeecCCceeehhhc
Confidence 999999999977777665
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-14 Score=132.84 Aligned_cols=286 Identities=13% Similarity=0.177 Sum_probs=192.0
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--C--ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--A--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
.|...+++.+++|.++++|+|..||.|.+|.--. + ...+.+.-|...|.+++|+++|.+++++ |+++.+-+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG---G~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG---GREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeec---ccceEEEEEe
Confidence 4777899999999999999999999999995322 2 3346778888899999999999999975 6689999999
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee---ec---------C-ceeEEECC-CC
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQ---------G-RPAAAYDD-QG 150 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~---------~-~~~~~~~~-~~ 150 (309)
+++++ .+.+..-.++|..+.++||+...+....|..|.+-...+......+. .. . ......+| .+
T Consensus 280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 280 LETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred ecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99988 55566677899999999999988888889999987653322221111 10 0 11234444 34
Q ss_pred cEEEEEECCEEEEEECCCCCc-CCceEEEeCCCC------CCCeEEEEccCCCEEEEEeC--------CC--cEEEEECC
Q 021648 151 LVFAVAFGGYIRMFDARKYEK-GPFDIFSVGGDI------SDANVVKFSNDGRLMLLTTM--------EG--HIHVLDSF 213 (309)
Q Consensus 151 ~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~------~~~~~v~~s~dg~~l~~~~~--------dg--~v~i~d~~ 213 (309)
..+..+..+.|.+||+-+... ..+++.....+. -.+..++.+..|.++++.-. || .+++|--.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 455556678999999765332 111111111111 13456677778888887642 33 45667543
Q ss_pred CCe---EeEEeeecCCCCCccceEEE-CCCCC-EEEEEcCCCcEEEEECCCC----------ceEEEeecCCCCCcEEEE
Q 021648 214 RGT---LLSTYNVKPVSRNSTLEASF-SPEGM-FVISGSGDGSVYAWSVRSG----------KEVASWMSFDTEPPVIKW 278 (309)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~~~~~~~-sp~g~-~l~s~s~Dg~i~vwd~~~~----------~~~~~~~~~~~~v~~l~~ 278 (309)
... .+.+--..| |.......+| +|... ..+++|.||.++||-...- .+.+.-..|..+++.++|
T Consensus 439 ~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 221 222211122 3444444444 44433 8999999999999998321 122211237889999999
Q ss_pred CCCeeEEEEccce-EEEeeecC
Q 021648 279 TPGSLMFVTGSSE-LSFWIPDL 299 (309)
Q Consensus 279 ~p~~~~l~s~~~d-~~~~~~~~ 299 (309)
+.||.+++.+-++ +.+|.++-
T Consensus 518 s~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 518 SQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cCCCcEEEEecCCEEEEecCCC
Confidence 9999888777666 99998765
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=7.7e-16 Score=126.43 Aligned_cols=222 Identities=15% Similarity=0.239 Sum_probs=155.7
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeeec--ccc---ceeEEEEecCCCEEEEEcCCCCCceeEEEEcc-CCc--eEE
Q 021648 21 KSSSYLVTASDDESIRLYDVTAATCLKTINS--KKY---GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNK--YLR 92 (309)
Q Consensus 21 ~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~-~~~--~~~ 92 (309)
|+..++|+.+.|.-|.+||+-+|+....++. |.. ...+++|+|||++++++ +...||++|+. .|. .+.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcch
Confidence 7788999999999999999999998877654 222 34679999999999865 47899999984 343 222
Q ss_pred Eee-----ecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCC-cEEEEE-ECCEEE
Q 021648 93 YFK-----GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG-LVFAVA-FGGYIR 162 (309)
Q Consensus 93 ~~~-----~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~i~ 162 (309)
... +..+-+.+++|+| +.+.++.++.-.++-|+.-....+..++..+ +..-..+.+++ .+++++ .+..|-
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 222 3367788999999 4568999998887777654455544444322 23445566655 455544 378999
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
.||+|....+-+.+...-+..++-..+...|+|++|++|+.||.|++||+.+ ++....+. .+...+..++++|.-.
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~---~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG---NYSDTVNGVSLNPIMP 353 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc---cccccccceecCcccc
Confidence 9999986554332222222223334456789999999999999999999987 55343332 3445677899999988
Q ss_pred EEEEEcCC
Q 021648 242 FVISGSGD 249 (309)
Q Consensus 242 ~l~s~s~D 249 (309)
.+|+++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88888754
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.8e-15 Score=135.83 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=135.5
Q ss_pred CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce--EEEeeecccCEEEEEecC
Q 021648 31 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCS 108 (309)
Q Consensus 31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~--~~~~~~h~~~v~~v~~~~ 108 (309)
.+..|.+||.+.. ..+.+..+...+...+|+|+++.+++++..+.+.+|.+||+.+++. +..+.+| ...+.|+|
T Consensus 182 ~~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 182 QPYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred ceEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence 3579999998644 4566666677788999999999998876543356899999988753 3334444 34689999
Q ss_pred CCCeEEEec-CCCcEEEee--CCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC
Q 021648 109 SKDCFISGS-LDRTVLLWD--QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 185 (309)
Q Consensus 109 ~~~~l~s~s-~Dg~v~~Wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 185 (309)
||+.|+.++ .||.+.+|. +.++.... +..+...
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------------------------lt~~~~~ 293 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------------------------LTSGAGN 293 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEe--------------------------------------------eccCCCC
Confidence 999887764 688776663 33221100 0001122
Q ss_pred CeEEEEccCCCEEEEEe-CCCcEEEEECCCC-eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648 186 ANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 186 ~~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
+...+|+|||+.++..+ .+|..+||++... ....... +.. ....|+|||++|+.++.++ +.+||+.+++..
T Consensus 294 ~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 294 NTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred cCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence 45678999999877655 4677888875432 2122211 111 3468999999999988765 666999887654
Q ss_pred EEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
.....+ ....++|+||+++++.++.+
T Consensus 367 ~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 367 VLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred EecCCC--CCCCceECCCCCEEEEEEcC
Confidence 322222 23567899999999888765
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=3.2e-16 Score=132.05 Aligned_cols=213 Identities=21% Similarity=0.284 Sum_probs=152.0
Q ss_pred cceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648 12 GRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 90 (309)
Q Consensus 12 ~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~ 90 (309)
.+|.++.|.+++. .||||+.|..||||-+..++. . +.+..| ++
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~------------------~----------~~~~~V--------~y 57 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP------------------G----------GGDMKV--------EY 57 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCC------------------C----------CCceeE--------EE
Confidence 4799999998876 999999999999998764320 0 001122 23
Q ss_pred EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648 91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 170 (309)
+.++..|+..|+.|.|+|+|..|+||+.+|.+.+|-....+.. .... ..-..+.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~d~-e~~~~ke-------------------- 111 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DADT-EADLNKE-------------------- 111 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cccc-hhhhCcc--------------------
Confidence 4567789999999999999999999999999999964321110 0000 0000000
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 250 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg 250 (309)
.-.....+.++..++..++++||+.++++++.|..+++||...|.++..+. .|...+..++|.|-++++++-|.|.
T Consensus 112 -~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 112 -KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred -ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCc
Confidence 011123345567788899999999999999999999999999999887655 3556778899999999999999999
Q ss_pred cEEEEECCCCceEEEe-----e--------------cCC----CCCcEEEECCCeeEEEEccc
Q 021648 251 SVYAWSVRSGKEVASW-----M--------------SFD----TEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 251 ~i~vwd~~~~~~~~~~-----~--------------~~~----~~v~~l~~~p~~~~l~s~~~ 290 (309)
..+++++...+.+... . -|. .....++|+|+|.++++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 188 HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 8888887654322111 0 011 22345899999999988654
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=3.6e-16 Score=136.02 Aligned_cols=118 Identities=19% Similarity=0.322 Sum_probs=101.5
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
+...+|.++|.+-.|+|||.-|+|+|.||.|++|. .+|-...++.....+|.+++|.|+.+.++++.. +.+.+-.
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g----~h~~IKp 172 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG----GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC----CeEEEee
Confidence 44578999999999999999999999999999997 456555666666678999999999999998852 4577777
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 127 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~ 127 (309)
+..+..+-..+.|.+-|.+++|++.++.++||+.|-..++||-
T Consensus 173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 7666666667899999999999999999999999999999995
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.1e-14 Score=132.51 Aligned_cols=264 Identities=14% Similarity=0.185 Sum_probs=175.7
Q ss_pred CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce--EEE----eeecccCEEEEE
Q 021648 32 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRY----FKGHHDRVVSLS 105 (309)
Q Consensus 32 D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~--~~~----~~~h~~~v~~v~ 105 (309)
++.+-||++.....-+....-+..|.+++|+|....++++. .++|+|.+||+..+.. ... ...|.++|+.+.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG--~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG--CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee--ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 34789999986533222223345689999999666666553 3589999999987654 222 245889999999
Q ss_pred ecCC--CCeEEEecCCCcEEEeeCCCcee-eeee----ee---------cCceeEEEC--CCCcEEEEEECCEEEEEECC
Q 021648 106 LCSS--KDCFISGSLDRTVLLWDQRAEKC-QGLL----RV---------QGRPAAAYD--DQGLVFAVAFGGYIRMFDAR 167 (309)
Q Consensus 106 ~~~~--~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~----~~---------~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~ 167 (309)
|..+ +.-|+|+|.||.|..|+++.-.. ...+ .. .......+. +...++.++.+|.|.--.-.
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 9754 34599999999999998764322 1100 00 011223333 33456666677877764433
Q ss_pred CCCcCC---ce-EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CCeEeEEeeecCCCCCccceEEECCC-CC
Q 021648 168 KYEKGP---FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPE-GM 241 (309)
Q Consensus 168 ~~~~~~---~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~sp~-g~ 241 (309)
.++... ++ +.....+...+.++.++|=+..+...+.|-+|+||... ...++..+.. +...+.+++|||- -.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCce
Confidence 332222 11 12333456788999999977666666569999999876 4444433332 2344788999996 47
Q ss_pred EEEEEcCCCcEEEEECCC--CceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648 242 FVISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~ 300 (309)
.++++..||.|.+||+.. .+++.+.+.+....+.+.|+++++.++.|....++++.+++
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 889999999999999954 34566665566677889999999999999998777766663
No 192
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.5e-15 Score=130.91 Aligned_cols=260 Identities=19% Similarity=0.286 Sum_probs=180.3
Q ss_pred ccceEecCCCcceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceee----------------------------eeecc
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLK----------------------------TINSK 52 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~----------------------------~~~~~ 52 (309)
|+++.|. |..+-+.|..+|||+|+ |||-+-=.|++||+....... +++.|
T Consensus 43 eLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 43 ELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 4555564 68888999999999985 677778899999997543221 11212
Q ss_pred cc-------ce----eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCc
Q 021648 53 KY-------GV----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT 121 (309)
Q Consensus 53 ~~-------~v----~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~ 121 (309)
.. .+ ..++++.-.-.++++.+ ...|.-++++.|..+..|.--.+.+++|..++-..+|+.|+.||.
T Consensus 122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred hhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEecccCce
Confidence 10 01 12223222223333332 346888899999999988888899999999998889999999999
Q ss_pred EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648 122 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT 201 (309)
Q Consensus 122 v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~ 201 (309)
|.+||++.......+...... . ..+ -......++++.|+.+|=.+++|
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v--~-------------------------s~p-----g~~~~~svTal~F~d~gL~~aVG 246 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSV--N-------------------------SHP-----GGDAAPSVTALKFRDDGLHVAVG 246 (703)
T ss_pred EEEecchhhhhheeeeccccc--C-------------------------CCc-----cccccCcceEEEecCCceeEEee
Confidence 999999877655444322110 0 000 00112357899999999999999
Q ss_pred eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC--CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648 202 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 279 (309)
Q Consensus 202 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~ 279 (309)
+.+|.|.|+|+++.+++..-. + ...-++..+.|.+.+ ..++|. ....++|||-.+|+....+.. +..++.+++-
T Consensus 247 ts~G~v~iyDLRa~~pl~~kd-h-~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~ 322 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLVKD-H-GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFV 322 (703)
T ss_pred ccCCcEEEEEcccCCceeecc-c-CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeee
Confidence 999999999999877665332 1 223466778897763 444444 335789999999998887644 4469999999
Q ss_pred CCeeEEEEccce---EEEeeecCCC
Q 021648 280 PGSLMFVTGSSE---LSFWIPDLSK 301 (309)
Q Consensus 280 p~~~~l~s~~~d---~~~~~~~~~~ 301 (309)
|++-++.+|-.. ..++.|+|..
T Consensus 323 p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 323 PGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred cCCceEEEecCCCcceeEEccccCC
Confidence 998777776553 7778888854
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.4e-14 Score=131.43 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=148.8
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
.+++..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ...........|+|+++.++++....-+..|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 34566677789999999999999988754 3699999988765432 2222234467899999988765332225679
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 157 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (309)
.+||+.+++. ..+..|.......+|+||++.|+..+. ++. +.++|+.+++...
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----------------------- 330 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----------------------- 330 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----------------------
Confidence 9999988764 445556656678899999998876653 444 3333333221100
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
....+ ......++||||+.++..+.++ .|.+||+.+++.. .+. . .......
T Consensus 331 -------------------lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~---~~~~~~p 384 (433)
T PRK04922 331 -------------------LTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-P---GSLDESP 384 (433)
T ss_pred -------------------eecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-C---CCCCCCc
Confidence 00001 1122468999999998765443 6999998877654 222 1 1123456
Q ss_pred EECCCCCEEEEEcCC---CcEEEEECCCCceEEEeecCCCCCcEEEECC
Q 021648 235 SFSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 280 (309)
Q Consensus 235 ~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p 280 (309)
.|+|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 385 ~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 385 SFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 899999998887764 368888885 444555555667788888987
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=4.5e-16 Score=130.79 Aligned_cols=173 Identities=19% Similarity=0.293 Sum_probs=133.6
Q ss_pred EEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648 92 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170 (309)
Q Consensus 92 ~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 170 (309)
-.+.||+++|..++|+| +.+.++|||.|.+|.+|.+-.+.....+.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------------------- 121 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------------------- 121 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------------------------------
Confidence 34679999999999999 45689999999999999874433221111
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 249 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D 249 (309)
-.+..+.+|...|..+.+.|.. ..|++++.|.+|.+||..+|+.+.++. |...|.+++|+-||.+++|.+.|
T Consensus 122 ---epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 122 ---EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred ---cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeeccc
Confidence 0123344565667778888865 677889999999999999999887654 56778999999999999999999
Q ss_pred CcEEEEECCCCceEEEeecCCC-CCcEEEECCCeeEEEEccc---eEEEeeecCCCccc
Q 021648 250 GSVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSLMFVTGSS---ELSFWIPDLSKLGA 304 (309)
Q Consensus 250 g~i~vwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~s~~~---d~~~~~~~~~~~~~ 304 (309)
..|||||.++++.+.+-++|.+ ....+.|-.++..+.+|-+ +.++=+|+...|.+
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence 9999999999999998888876 4566889999997777764 45554554444443
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.4e-13 Score=111.71 Aligned_cols=239 Identities=15% Similarity=0.221 Sum_probs=155.0
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCC-----CCceeEEEEccC
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-----WDESLRLLSLHD 87 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-----~d~~i~~~d~~~ 87 (309)
...+++|++|..=++.| .|.-.|||+.+--+....-..+..+...+..-.-.++++... +| .-+.+-+||-..
T Consensus 7 ~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVG-Gg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVG-GGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEec-CCCCCCCCCceEEEEeccc
Confidence 34569999988766555 677789999863222111111111111111111112222221 11 136799999766
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC-CceeeeeeeecC--ceeEEECC--CCcEEEEE--ECCE
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQG--RPAAAYDD--QGLVFAVA--FGGY 160 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~--~~~~ 160 (309)
..++..+. -..+|.+|.+.++ +++..- +..|.+|.+. +.+..+.+.... +-.+++.+ ...+++.- .-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777665 6678999999875 344443 7899999876 334443332221 11223322 22333322 2488
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-EEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
|++-|+.....++ -..+..|.+++.+++.+-+|..+|+++..|+ |||||..+|+++.++.-.. ....+.+++|||+
T Consensus 161 vQi~dL~~~~~~~--p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNA--PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCC--ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCC
Confidence 9999987654421 1233457789999999999999999999997 8999999999999987543 3456889999999
Q ss_pred CCEEEEEcCCCcEEEEECCCC
Q 021648 240 GMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
+.+||.+|+-|+++|+.++..
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999998753
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.2e-16 Score=130.22 Aligned_cols=189 Identities=19% Similarity=0.192 Sum_probs=131.5
Q ss_pred eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee
Q 021648 57 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 136 (309)
Q Consensus 57 ~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~ 136 (309)
..+||+.++..+.++. .|+++|+|+..+.+.+.....|.++|.+++|+||++.|++-+.| ..++|+.+++.+...+
T Consensus 148 k~vaf~~~gs~latgg---~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG---TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeecc---ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 4788888888887764 48999999987777778888999999999999999999999999 9999999888543322
Q ss_pred eecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-----CEEEEEeCCCcEEEEE
Q 021648 137 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLD 211 (309)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-----~~l~~~~~dg~v~i~d 211 (309)
..... .. ....+.|+.|+ +.++....-+.|+.+|
T Consensus 224 t~~~k--------~~---------------------------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 224 TPFSK--------DE---------------------------------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred CCccc--------ch---------------------------------hhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 21100 00 01122333333 1112222233444444
Q ss_pred CCC--C-eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECCCeeEEEE
Q 021648 212 SFR--G-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVT 287 (309)
Q Consensus 212 ~~~--~-~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~~~l~s 287 (309)
+.. + ..+.... .......+.+++.|+||+++|.|+.||.|-|++..+-+.+.-. ..|...|+.|.|+|+.+.+++
T Consensus 263 ~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 263 ISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred eeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 321 1 1111100 0011246778999999999999999999999999887776543 579999999999999999988
Q ss_pred ccce
Q 021648 288 GSSE 291 (309)
Q Consensus 288 ~~~d 291 (309)
.+++
T Consensus 342 vSs~ 345 (398)
T KOG0771|consen 342 VSSD 345 (398)
T ss_pred cccC
Confidence 8876
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.8e-14 Score=118.84 Aligned_cols=274 Identities=14% Similarity=0.282 Sum_probs=180.9
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEee
Q 021648 16 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK 95 (309)
Q Consensus 16 ~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~ 95 (309)
-.+|||+|+++|+++.- .+-|=|.++.+..+.+.-- ..+..+.+..+...++.+.. .|+.|.+|++...+....++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-dki~yieW~ads~~ilC~~y--k~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-DKIVYIEWKADSCHILCVAY--KDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-HHhhheeeeccceeeeeeee--ccceEEEEEeecceeEEEec
Confidence 35799999999999754 7778888876655544332 23555677777776666542 37899999999999888888
Q ss_pred ecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec-CceeEEECCCCcEEEEEE----------------
Q 021648 96 GHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF---------------- 157 (309)
Q Consensus 96 ~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------- 157 (309)
.-.+.+.+++|+|||+ .|.+...|-.|-+|.+.+.++....... +....++.+++++.+...
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8889999999999997 5667788999999999887765432111 122345555655554332
Q ss_pred ---------------------CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 021648 158 ---------------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 158 ---------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~ 216 (309)
++.+-+||.-- .+.++..+- ...+..+.+||.+++++.|+.|+++|+.+..+-+
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv~aYe~-~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKVYAYER-GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchh----hheeeeeee-ccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 12334443110 111111111 1356778999999999999999999986643322
Q ss_pred EeEEe------------------------------------------------e----------e-----cCCCCCccce
Q 021648 217 LLSTY------------------------------------------------N----------V-----KPVSRNSTLE 233 (309)
Q Consensus 217 ~~~~~------------------------------------------------~----------~-----~~~~~~~~~~ 233 (309)
...+| + . .+.....+-.
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 21111 0 0 0001112345
Q ss_pred EEECCCCCEEEEEcCC--CcEEEEECCCCceEEEeecCCCCCcEEEECCCee--EEEEccceEEEeeecC
Q 021648 234 ASFSPEGMFVISGSGD--GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIPDL 299 (309)
Q Consensus 234 ~~~sp~g~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~s~~~d~~~~~~~~ 299 (309)
++||+|..|++|-.+. ..+-+||++..+..+.+. ...+|....|+|... .+++|++-+++|.|..
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 8999999999998543 588999998866544432 345789999999864 4456667788887765
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.7e-16 Score=134.59 Aligned_cols=229 Identities=14% Similarity=0.180 Sum_probs=179.1
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648 15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 94 (309)
Q Consensus 15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~ 94 (309)
..+.++.+|+.|+-|+.-|.|-.+|..++.....+..-. .|..+.|-.+..+++++- ..-+.+||- .|..+..+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecC-CCcEEeeh
Confidence 467889999999999999999999999988877766432 466777766666655543 456888884 45667777
Q ss_pred eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCc
Q 021648 95 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 174 (309)
Q Consensus 95 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 174 (309)
+.| .+|..+.|.|-.-.|++++.-|-+++-|+.+++.+..+....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------------------------------- 251 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------------------------------- 251 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC----------------------------------
Confidence 755 578999999988889999999999999998887655443211
Q ss_pred eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEE
Q 021648 175 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA 254 (309)
Q Consensus 175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~v 254 (309)
..+...+-+|-.-.+-.|..+|+|.+|...+.+.+..+.+ |.++|.++++.|+|+|+||.|.|..++|
T Consensus 252 ---------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 252 ---------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred ---------CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh---cCCCcceEEECCCCcEEeecccccceeE
Confidence 1122334556667788899999999999988877765543 5678899999999999999999999999
Q ss_pred EECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeee
Q 021648 255 WSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 255 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
||+++...+.+... +.....+++|..|.+.++-+.-+++|--
T Consensus 320 WDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 320 WDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred eeeccccccceeec-CCCccccccccccceeeecCCeeeeehh
Confidence 99998776666544 4456789999999888888888999943
No 199
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.7e-15 Score=130.11 Aligned_cols=251 Identities=13% Similarity=0.178 Sum_probs=178.0
Q ss_pred eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eEEEecCCCcEEEe
Q 021648 47 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLW 125 (309)
Q Consensus 47 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~W 125 (309)
..+.+|...|.++...|.|..+++++. |+++|+|.+.+|.+++... -.+.|.+|+|+|.++ .++.++.+..+.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsd---DGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSD---DGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCC---CCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 346789999999999999999998765 8999999999999998876 556899999999765 45555555556666
Q ss_pred eCCCceeee--------------------------------------eeeec-CceeEEECCCCcEEEEEEC----CEEE
Q 021648 126 DQRAEKCQG--------------------------------------LLRVQ-GRPAAAYDDQGLVFAVAFG----GYIR 162 (309)
Q Consensus 126 d~~~~~~~~--------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~----~~i~ 162 (309)
+..-+..+. ++... ....+..+..|.++++... ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 543220000 00000 0112334455666665532 5688
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 242 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~ 242 (309)
|.++.+...+ . .+.-....+..+.|.|...+++.++ ...|+|||+.+.+++..+.. ....+..++.+|.|..
T Consensus 550 iHQLSK~~sQ-~---PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t---g~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 550 IHQLSKRKSQ-S---PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT---GSKWISSMSIHPNGDN 621 (733)
T ss_pred EEeccccccc-C---chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc---CCeeeeeeeecCCCCe
Confidence 8887653221 1 1111234578899999998887764 56789999988776655432 2345667899999999
Q ss_pred EEEEcCCCcEEEEECCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEe----------eecCCCccccccCC
Q 021648 243 VISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW----------IPDLSKLGAYVGRK 309 (309)
Q Consensus 243 l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~----------~~~~~~~~~~~~~~ 309 (309)
|+.|+.|+.+..+|+.-. ++.+++..|...+..|+||+.-.+|++|+.| +.++ .|.+-.|+.+.||+
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999999999999754 5677888999999999999999999999987 3322 23456778888874
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=2.2e-15 Score=133.57 Aligned_cols=225 Identities=17% Similarity=0.300 Sum_probs=151.7
Q ss_pred CcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCC-------CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 11 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 11 ~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
...|+.+.|+| |..+||.++.|+.|+||-+.. .+....+..|...+..+-|+|-...++..+ .+|.+|++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a--syd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA--SYDSTIEL 704 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh--hccceeee
Confidence 34689999999 778999999999999998863 233455777877899999998665555443 35999999
Q ss_pred EEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 162 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (309)
||+.+++....+.||++.|.+++|+|+|+.++|.+.||++++++.+++..- ....++ .+
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg~g----------pv---------- 763 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEGKG----------PV---------- 763 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccCCC----------Cc----------
Confidence 999999988999999999999999999999999999999999998765311 000000 00
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC----cEEEEECCCCe--EeEEeeecCCCCCccceEEE
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFRGT--LLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg----~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~ 236 (309)
+ .....+.+.-||+++++.+.|+ .|.+||..+-. .+.+...... ..+.-=.|
T Consensus 764 ------------------g--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--ps~LvP~Y 821 (1012)
T KOG1445|consen 764 ------------------G--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA--PSPLVPHY 821 (1012)
T ss_pred ------------------c--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc--Cccccccc
Confidence 0 0112344555788877776654 68888865422 2222221110 01111134
Q ss_pred CCC-CCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcE--EEECC
Q 021648 237 SPE-GMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPV--IKWTP 280 (309)
Q Consensus 237 sp~-g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~--l~~~p 280 (309)
.+| +-.++||-.|..|+.|.+-...+ +-.+..|.+++.. |+|.+
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~ 869 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQ 869 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeec
Confidence 555 46778888899999999865433 3334444443322 55544
No 201
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.8e-14 Score=125.68 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=146.0
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+++..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ..........+|+|+++.++++... ++...
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~ 265 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSR--DGNSQ 265 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEcc--CCCce
Confidence 4556778889999999999999887754 3599999998875432 2222334578999999988765432 44444
Q ss_pred EE--EccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCC--CceeeeeeeecCceeEEECCCCcEEEEE
Q 021648 82 LL--SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAVA 156 (309)
Q Consensus 82 ~~--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
+| |+.+++ ...+..|........|+|||+.|+..+. ++...+|.+. ++...
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----------------------- 321 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----------------------- 321 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------------------
Confidence 54 555544 4555556666677899999998776553 4566666532 11100
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccce
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLE 233 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
++ ...+ .......+||||++++..+.++ .|.+||+.+++... +. . ......
T Consensus 322 -----~l--------------t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt-~---~~~~~~ 375 (427)
T PRK02889 322 -----RV--------------TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT-D---TTRDES 375 (427)
T ss_pred -----EE--------------ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc-C---CCCccC
Confidence 00 0000 0112357999999998877654 69999988776442 21 1 112245
Q ss_pred EEECCCCCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 234 ASFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 234 ~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
..|+|||++|+.++.++ .+++.++ +++....+..+.+.+...+|+|-
T Consensus 376 p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 376 PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 79999999999887665 4666666 45555556667778888899884
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-13 Score=125.10 Aligned_cols=225 Identities=12% Similarity=0.067 Sum_probs=147.4
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
.+++..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+...+|+|+++.++++...+....|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3566778889999999999999988774 468999999887653 333344456678899999988765433224568
Q ss_pred EEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648 81 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 157 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (309)
.++|+++++. ..+..+........|+||++.++..+. ++ .|.+||+..+.....
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l---------------------- 329 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI---------------------- 329 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe----------------------
Confidence 8889988764 446666666778899999998876653 33 345555433221100
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
.. .........+||||+.++....+ ..|.+||+..+.. ..+.. ...+...
T Consensus 330 --------------------t~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~----~~~~~~p 382 (435)
T PRK05137 330 --------------------SF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS----GFLVEGP 382 (435)
T ss_pred --------------------ec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC----CCCCCCC
Confidence 00 00112345799999999876643 3688888755443 22211 1234567
Q ss_pred EECCCCCEEEEEcCC------CcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 235 SFSPEGMFVISGSGD------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 235 ~~sp~g~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
.|+|||++|+..+.+ ..++++|+..++. ..+. .++.+...+|+|-
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 999999998776543 2588888865543 3443 3445677788873
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.65 E-value=1.2e-14 Score=117.84 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=135.0
Q ss_pred ceEec-CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee-eeee-----ccccceeEEEEec--CCCEEEEEcCC
Q 021648 4 GMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTIN-----SKKYGVDLVCFTS--HPTTVIYSSKN 74 (309)
Q Consensus 4 ~~~~~-~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~-~~~~-----~~~~~v~~~~~~~--~~~~~~~~s~~ 74 (309)
+..|. .|-+.|.||.|.|++..+++-. |..|.+|+.+.+..+ ..+. .+....+.-.|+| +++.+++.+
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-- 191 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-- 191 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--
Confidence 33444 5667999999999999998875 999999999876653 3222 1233456667888 445666554
Q ss_pred CCCceeEEEEccCCceEEEe-eecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcE
Q 021648 75 GWDESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 152 (309)
Q Consensus 75 g~d~~i~~~d~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (309)
|.+++.||+.+.++...+ ..|-..|+.++|+|+.. +|+||+.||.||+||.|..+..
T Consensus 192 --d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p------------------- 250 (370)
T KOG1007|consen 192 --DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP------------------- 250 (370)
T ss_pred --CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-------------------
Confidence 789999999876554443 56778999999999865 7899999999999998754311
Q ss_pred EEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCC----------------
Q 021648 153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG---------------- 215 (309)
Q Consensus 153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~---------------- 215 (309)
++.+.+|.-.+.+|.|+|.. +++++++.|..|.+|.+.+-
T Consensus 251 -----------------------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e 307 (370)
T KOG1007|consen 251 -----------------------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE 307 (370)
T ss_pred -----------------------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence 11122222333444444432 33444445555554443210
Q ss_pred -------------eEeEEeeecCCCCCccceEEECC-CCCEEEEEcCCCcEEEEECCC
Q 021648 216 -------------TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 216 -------------~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.++.++ ..|...|.+++||. |-=.+|+-|.||.+.|=.+..
T Consensus 308 ~~dseer~kpL~dg~l~ty---dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 308 DEDSEERVKPLQDGQLETY---DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred chhhHHhcccccccccccc---cccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111222 24567889999987 455667789999999877654
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=2.1e-13 Score=114.02 Aligned_cols=225 Identities=14% Similarity=0.228 Sum_probs=139.4
Q ss_pred eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeeccc--CEEEEEecCCCCeEEEecCCC--cEEEeeCCCcee
Q 021648 57 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD--RVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKC 132 (309)
Q Consensus 57 ~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~ 132 (309)
...+|..+...+..++.+| -++|..+..+. .+..-.+ .|...-|+. ..+|-.+.+. .+++.+++....
T Consensus 9 ~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred eeeeeccceeEEEccCCCc----eeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 3344554544455555433 46666544322 1111122 344444543 4555555443 478888776554
Q ss_pred eeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCC---CCCCCeEEEEccCCCEEEEEe--CCCcE
Q 021648 133 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTT--MEGHI 207 (309)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~v~~s~dg~~l~~~~--~dg~v 207 (309)
+..+..+... ....-....+.+.....|++||+++++. +.++.. +...+.++++++++.+++.-+ ..|.|
T Consensus 81 ICe~~fpt~I-L~VrmNr~RLvV~Lee~IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIFFPTSI-LAVRMNRKRLVVCLEESIYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEecCCce-EEEEEccceEEEEEcccEEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 4444333221 1111122333344555699999987642 122211 222334444455556888754 46999
Q ss_pred EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCc-EEEEECCCCceEEEeecC--CCCCcEEEECCCeeE
Q 021648 208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLM 284 (309)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~~ 284 (309)
++||..+-.....++ .|.+++.+++|+|+|.+|||||+-|+ |||+.+.+|+++.+|..= ...|.+|+|+|++++
T Consensus 156 ~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999998887777776 46788889999999999999999995 699999999999998642 346788999999999
Q ss_pred EEEccce--EEEeee
Q 021648 285 FVTGSSE--LSFWIP 297 (309)
Q Consensus 285 l~s~~~d--~~~~~~ 297 (309)
|+..++. ++++-.
T Consensus 233 L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 233 LAASSNTETVHIFKL 247 (391)
T ss_pred EEEecCCCeEEEEEe
Confidence 9888775 555433
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=6.4e-15 Score=128.33 Aligned_cols=165 Identities=19% Similarity=0.341 Sum_probs=113.0
Q ss_pred ccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648 98 HDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI 176 (309)
Q Consensus 98 ~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 176 (309)
+..|+++.|-|. ...|+.+-.+|.+.++|.+-. .....+...+..++..++. ..|.-.. ...+...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~t~p~~~~~k~~~~f~i------~t~ksk~-~rNPv~~ 285 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGATAPSYQALKDGDQFAI------LTSKSKK-TRNPVAR 285 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccCCCCcccccCCCCeeEE------eeeeccc-cCCccce
Confidence 468999999984 346677778999999985211 0001111111222222221 1111111 1112222
Q ss_pred EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648 177 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 177 ~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd 256 (309)
+.. ....++.++|||||++||+-+.||.+||||-.+.+++....- .-+...+|+|||||+||++|++|.-|.||.
T Consensus 286 w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 286 WHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred eEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 222 223688999999999999999999999999887776654321 124567899999999999999999999999
Q ss_pred CCCCceEEEeecCCCCCcEEEECC
Q 021648 257 VRSGKEVASWMSFDTEPPVIKWTP 280 (309)
Q Consensus 257 ~~~~~~~~~~~~~~~~v~~l~~~p 280 (309)
+...+.++--.+|.+-|+.|+|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 999998888889999999999983
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.1e-13 Score=123.79 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=139.9
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 112 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 112 (309)
.+|.+||.+ +...+.+..+...+...+|+|+++.+++.+..+.+..+.+||+.+++.. .+..+.+...+..|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 468899985 4455556556667888899999999998775444678999999887653 33444555567899999986
Q ss_pred EE-EecCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648 113 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189 (309)
Q Consensus 113 l~-s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v 189 (309)
++ +.+.++ .|.+||+.+++.... ..+.......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~l--------------------------------------------t~~~~~~~~~ 297 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRL--------------------------------------------TNHFGIDTEP 297 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEEC--------------------------------------------ccCCCCccce
Confidence 64 555555 477777655432110 0001112346
Q ss_pred EEccCCCEEEEEeC-CC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 021648 190 KFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV 263 (309)
Q Consensus 190 ~~s~dg~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~ 263 (309)
+|+|||+.++..+. +| .|+++|+.+++... +.. ........+|||||++|+..+.++ .|.+||+.+++..
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 89999998887764 34 46677776655332 221 112234579999999998775443 6999999887644
Q ss_pred EEeecCCCCCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648 264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDL 299 (309)
Q Consensus 264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~~ 299 (309)
.+. +........|+||+++++..+.+ -.+|..++
T Consensus 374 -~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 374 -TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred -ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 332 33344567999999987765542 45555544
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=2.9e-12 Score=113.18 Aligned_cols=269 Identities=16% Similarity=0.207 Sum_probs=163.2
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+++..+....+....+.|+|||+++..++.|+.|.++|+.+++.++++..... ...+++++++++++++. ..++++.
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n--~~~~~v~ 103 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVAN--YEPGTVS 103 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEE--EETTEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEe--cCCCcee
Confidence 45667765545555688999999999999999999999999999999887654 46789999999988774 3478999
Q ss_pred EEEccCCceEEEeeec-------ccCEEEEEecCCCCeEEEecCC-CcEEEeeCCCceeee--eeeecCc-eeEEECCCC
Q 021648 82 LLSLHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSLD-RTVLLWDQRAEKCQG--LLRVQGR-PAAAYDDQG 150 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~D-g~v~~Wd~~~~~~~~--~~~~~~~-~~~~~~~~~ 150 (309)
++|.++.+.++.+... ..++.++..++....++..-.| +.|-+-|....+... .+..... .-..+++++
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 9999999988876532 3467788878887766666665 666666766544332 2222111 124566666
Q ss_pred cEEEEEE--CCEEEEEECCCCCc---------C---C--------c-------------------------------eEE
Q 021648 151 LVFAVAF--GGYIRMFDARKYEK---------G---P--------F-------------------------------DIF 177 (309)
Q Consensus 151 ~~~~~~~--~~~i~~~d~~~~~~---------~---~--------~-------------------------------~~~ 177 (309)
+++.++. .+.|-++|....+. + + + .+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 6554442 35666666543210 0 0 0 000
Q ss_pred EeCCCCCCCeEEEEccCCCEEEEE----eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC--c
Q 021648 178 SVGGDISDANVVKFSNDGRLMLLT----TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--S 251 (309)
Q Consensus 178 ~~~~~~~~~~~v~~s~dg~~l~~~----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--~ 251 (309)
.+... ....-+..+|+++++... ..++.|.++|..+.+...++...+ ...+..+.|++||+++.....|+ .
T Consensus 264 ~I~~~-G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~--~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 264 TIPTQ-GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP--GKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEE-S-SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH--T--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEECC-CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC--CCcEeccEECCCCCEEEEEEecCCCE
Confidence 00001 111345679999999888 345899999999887776654221 22366789999999876664443 6
Q ss_pred EEEEECCCCceEEEeecCCCCCcEEEECCCeeEE
Q 021648 252 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF 285 (309)
Q Consensus 252 i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 285 (309)
|.|||..+.+.++.++ .-+|.|+++
T Consensus 341 i~v~D~~Tl~~~~~i~---------~~tP~G~f~ 365 (369)
T PF02239_consen 341 IVVYDAKTLKEKKRIP---------VPTPTGKFN 365 (369)
T ss_dssp EEEEETTTTEEEEEEE-----------SEEEEEE
T ss_pred EEEEECCCcEEEEEEE---------eeCCCeEec
Confidence 9999999999988876 235766654
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=7.2e-14 Score=113.42 Aligned_cols=230 Identities=13% Similarity=0.152 Sum_probs=151.7
Q ss_pred CCCcceEEEEeCCCC-----CEEEEeeCCCcEEEEEcCC--Cc--eeeeeecc-----ccceeEEEEec-CCCEEEEEcC
Q 021648 9 DYNGRISSMDFHKSS-----SYLVTASDDESIRLYDVTA--AT--CLKTINSK-----KYGVDLVCFTS-HPTTVIYSSK 73 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~-----~~l~t~s~D~~v~iWd~~~--~~--~~~~~~~~-----~~~v~~~~~~~-~~~~~~~~s~ 73 (309)
.|.=+++.+-|.|+. ++|||.| -.+|+|.+.. .+ +...+..+ ..+.+...|.. +++++.++|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS- 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS- 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec-
Confidence 477789999999976 3566654 4899998863 11 11222222 23444444444 455565554
Q ss_pred CCCCceeEEEEccCCce--E-EEeeecccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec----Ccee--
Q 021648 74 NGWDESLRLLSLHDNKY--L-RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPA-- 143 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~~~--~-~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~~-- 143 (309)
.|-+..+||++++.. + -.+-.|..+|..++|..++. .|+|.|.||++|++|+|.-.-. ++-.. ..+.
T Consensus 171 --iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 171 --IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPSTPLLR 247 (364)
T ss_pred --ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCCCccee
Confidence 489999999998743 3 34668999999999998654 7999999999999999754321 11111 0111
Q ss_pred EEECC-CCcEEEE-EE-CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeE--
Q 021648 144 AAYDD-QGLVFAV-AF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL-- 217 (309)
Q Consensus 144 ~~~~~-~~~~~~~-~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~-- 217 (309)
....+ +..++++ +. ...|.+.|+|.. ...+..+.+|...|+.+++.|.. ..+++++.|-.+.+||+.....
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P---~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVP---CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCC---CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 11111 2233333 23 368999999863 34566788899999999999964 6788999999999999865322
Q ss_pred -eEEeeecCCCCCccceEEECC-CCCEEEEEcC
Q 021648 218 -LSTYNVKPVSRNSTLEASFSP-EGMFVISGSG 248 (309)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~sp-~g~~l~s~s~ 248 (309)
...... ......|..+.|+| .+.+++.+..
T Consensus 325 ~~dPila-y~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 325 GEDPILA-YTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCchhh-hhccceeeeeeecccCCCEEEEEec
Confidence 111111 12346778899996 5778887764
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.3e-13 Score=121.36 Aligned_cols=216 Identities=12% Similarity=0.114 Sum_probs=142.4
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 112 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 112 (309)
..|.+||.+ |...+.+..+...+...+|+|+++.+++.+..+-+..|.+||+.+++. ..+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence 467788875 445555666666788999999999988876544468999999988764 345567777888999999987
Q ss_pred EE-EecCCCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648 113 FI-SGSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189 (309)
Q Consensus 113 l~-s~s~Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v 189 (309)
|+ +.+.++. |.+||++++..... ..+.......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~L--------------------------------------------t~~~~~~~~~ 295 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRL--------------------------------------------TDSPAIDTSP 295 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEc--------------------------------------------cCCCCccCce
Confidence 65 5666665 55556654432110 0001112346
Q ss_pred EEccCCCEEEEEeC-C--CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 021648 190 KFSNDGRLMLLTTM-E--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV 263 (309)
Q Consensus 190 ~~s~dg~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~ 263 (309)
.+||||+.++..+. + ..|+++|+..++... +.. .........|+|||++|+..+.++ .|.+||+.++. .
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~ 370 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E 370 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence 89999998887664 3 368888877655432 221 122344578999999998876543 68889986543 2
Q ss_pred EEeecCCCCCcEEEECCCeeEEEEccce------EEEeeecCC
Q 021648 264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDLS 300 (309)
Q Consensus 264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d------~~~~~~~~~ 300 (309)
..+. ....+..+.|+|||+.++..+.+ ..+|..++.
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 3332 23356778999999887664432 367766653
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=6.9e-13 Score=120.14 Aligned_cols=207 Identities=11% Similarity=0.106 Sum_probs=132.3
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 112 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 112 (309)
..|.+||.+.... +.+..+...+...+|+|+++.+++.+..+.+..+.+||+.+++... +....+.+..+.|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 3688888875443 4444455568889999999999877643335789999998876432 2223334456899999997
Q ss_pred EEEe-cCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648 113 FISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189 (309)
Q Consensus 113 l~s~-s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v 189 (309)
|+-. +.+| .|.+||+++++..... .....+...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------------------~~~~~~~~~ 292 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------------------DGRSNNTEP 292 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEcc--------------------------------------------CCCCCcCce
Confidence 7744 4444 4667776554321100 001123456
Q ss_pred EEccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCCceE
Q 021648 190 KFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEV 263 (309)
Q Consensus 190 ~~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~ 263 (309)
.|+|||+.|+..+.+ + .|+++|+.++... .+.. .........|+|||++|+..+.+ ..|++||+.+++.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~- 367 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV- 367 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-
Confidence 899999988877654 3 4555577665443 2221 11233457899999999887654 3588999988753
Q ss_pred EEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 264 ASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
..+.. ........|+|||++++.++.+
T Consensus 368 ~~Lt~-~~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 368 QVLTD-TFLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred EEeCC-CCCCCCceECCCCCEEEEEEcC
Confidence 33332 1223467899999988887765
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=9.4e-14 Score=114.11 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=175.9
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
.+|.--..+|+|-+|++|+..+|.+-....|-||...... ..+++..|...|+.++++|..+.++.++. |..-.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnay 80 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAY 80 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCcc
Confidence 3455556899999999999999999999999999876543 57889999999999999999999999875 88999
Q ss_pred EEEc-cCCc--eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648 82 LLSL-HDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 158 (309)
Q Consensus 82 ~~d~-~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (309)
||.. ..++ +.-.+..|...+++|.|+|..+.|+.||.-+.|.+|-++.++--.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW------------------------ 136 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW------------------------ 136 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee------------------------
Confidence 9998 4454 455677899999999999999999999999999998765442110
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCC------------------eEeEE
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------------------TLLST 220 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~------------------~~~~~ 220 (309)
+.+.-+. ...+.|.++.+.|++-++++|+.|++.|+|...-. +++.+
T Consensus 137 -------VsKhikk--------PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 137 -------VSKHIKK--------PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred -------hhhhhCC--------ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 0000000 12356788999999999999999999999864211 11111
Q ss_pred eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
+. ...+.+..+.|+|+|..|+=.+.|+++.+=|..... .+.+...-.-+..++.|-.. ..++.++.
T Consensus 202 ~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~ 268 (361)
T KOG1523|consen 202 AS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGY 268 (361)
T ss_pred hc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCC
Confidence 11 234567789999999999999999999999987654 33333222234555555333 33334433
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=7.1e-14 Score=130.42 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=159.3
Q ss_pred eeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc---cCEEEEEecC--CCCeEEEecCCCcEEEeeCCCc
Q 021648 56 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH---DRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAE 130 (309)
Q Consensus 56 v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~---~~v~~v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~ 130 (309)
...+-|+|-...++++.. ...|++||.+.++.+..|..+. ..|..+.+-. |...+++|+.||.||+|+--..
T Consensus 1067 pk~~~~hpf~p~i~~ad~---r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADD---RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CceeeecCCCceeEEcCC---cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 344566666666665532 4689999999999887777654 4688888754 4458999999999999973222
Q ss_pred --eeeeeeee----------cCceeEE--E-CCCCcEEEEEECCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEEEc-c
Q 021648 131 --KCQGLLRV----------QGRPAAA--Y-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFS-N 193 (309)
Q Consensus 131 --~~~~~~~~----------~~~~~~~--~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~~s-~ 193 (309)
+..+.... .....+. . +..|.++++|.-..|++||..+... +..+ .+....++++.-+ .
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee----EeecccCCCccceeeccccc
Confidence 11111110 0011122 2 2456666666668899999875321 1111 1122334444332 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc--cceEEECCCC-CEEEEEcCCCcEEEEECCCCceEE--Eeec
Q 021648 194 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS--TLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVA--SWMS 268 (309)
Q Consensus 194 dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~sp~g-~~l~s~s~Dg~i~vwd~~~~~~~~--~~~~ 268 (309)
.|..+++|..||.|++||.+.............|... |..+.+.+.| ..|++|+.||.|++||++...... +...
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 4699999999999999998765432211222223333 8889998877 469999999999999998742221 2223
Q ss_pred C---CCCCcEEEECCCeeEEEEccc-eEEEeeecCCCccccc
Q 021648 269 F---DTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYV 306 (309)
Q Consensus 269 ~---~~~v~~l~~~p~~~~l~s~~~-d~~~~~~~~~~~~~~~ 306 (309)
| .+..+++..|+....+++|+. .+.+|..+...++.++
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence 3 335899999999999999994 5899998888877654
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.6e-14 Score=110.40 Aligned_cols=212 Identities=17% Similarity=0.256 Sum_probs=141.7
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 92 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~ 92 (309)
.|.+-+++|.+++|+.|..+|+|.+..+.+.. +++. ..+....+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~-------------------------s~sa----------~~~gk~~iv 56 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLD-------------------------SGSA----------EPPGKLKIV 56 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhh-------------------------cccc----------CCCCCccee
Confidence 45566789999999999999999988775311 0000 000112344
Q ss_pred EeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcC
Q 021648 93 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG 172 (309)
Q Consensus 93 ~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 172 (309)
.+++|.++|..+.|. ..+|++|+ ||.|+-|.-+..... .++-++|.+..
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es------------------------~~~K~lwe~~~---- 105 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES------------------------LATKRLWEVKI---- 105 (325)
T ss_pred eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh------------------------ccchhhhhhcC----
Confidence 457899999999998 35788887 699999975432110 01123343321
Q ss_pred CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE
Q 021648 173 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 252 (309)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i 252 (309)
+++. -......+++.-..|...-++.++.|+.++-||+++|+...++.. |...+.++.--.....++||++||++
T Consensus 106 P~~~--~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG---HtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 106 PMQV--DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG---HTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred cccc--CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC---CcceeeeeeecccCcceeecCCCccE
Confidence 1111 112335688888998877777888999999999999999988874 55667677664555688999999999
Q ss_pred EEEECCCCceEEEeecCC----------CCCcEEEECCCeeEEEEcc-ceEEEeee
Q 021648 253 YAWSVRSGKEVASWMSFD----------TEPPVIKWTPGSLMFVTGS-SELSFWIP 297 (309)
Q Consensus 253 ~vwd~~~~~~~~~~~~~~----------~~v~~l~~~p~~~~l~s~~-~d~~~~~~ 297 (309)
||||.++++.+..+.... .-|.+++ -+...+++|+ .-+.+|..
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEec
Confidence 999999999887764322 1223333 3455666655 45888843
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=3.5e-13 Score=127.55 Aligned_cols=264 Identities=12% Similarity=0.133 Sum_probs=157.3
Q ss_pred ccceEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCC-------CceeeeeeccccceeEEEEecCCCEEEEEcC
Q 021648 2 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 73 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 73 (309)
.++.++..|+..|..++.+++. .+++|||.||+||+||... .++..++......+..+.+-+.++++++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4677889999999999887655 9999999999999999853 2344556555667888888888999988864
Q ss_pred CCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC-CceeeeeeeecCceeEEECCCCcE
Q 021648 74 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQGLV 152 (309)
Q Consensus 74 ~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (309)
||.|++.++.-.+. .++.+++. ++=|.+ .+. .+.+...... .....+
T Consensus 1119 ---DG~v~~~~id~~~~-------------------~~~~~~~~-----ri~n~~~~g~---vv~m~a~~~~--~~S~~l 1166 (1431)
T KOG1240|consen 1119 ---DGSVRVLRIDHYNV-------------------SKRVATQV-----RIPNLKKDGV---VVSMHAFTAI--VQSHVL 1166 (1431)
T ss_pred ---CCeEEEEEcccccc-------------------ccceeeee-----ecccccCCCc---eEEeeccccc--ccceeE
Confidence 88999998754210 00111111 000000 000 0011110000 001133
Q ss_pred EEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648 153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL 232 (309)
Q Consensus 153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 232 (309)
+.+..-+.|..||+|....- -.........-+++++.+|.+.+++.|+..|.+.+||++=+.++...... +..++.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~--w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~ 1242 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDA--WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIR 1242 (1431)
T ss_pred EEEEeccceEEecchhhhhH--HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcc
Confidence 44444566777776643210 00011112246889999999999999999999999999877777765532 223444
Q ss_pred eEEEC---CCCCEEEEEc--CCCcEEEEECCCCceEEEeecC-------------------CCCCcEEEECCCeeEEEEc
Q 021648 233 EASFS---PEGMFVISGS--GDGSVYAWSVRSGKEVASWMSF-------------------DTEPPVIKWTPGSLMFVTG 288 (309)
Q Consensus 233 ~~~~s---p~g~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~-------------------~~~v~~l~~~p~~~~l~s~ 288 (309)
.+... |.....++++ .-+.+.+|++.+|.+-..+-.- .-.....++...+..+.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 44444 3445555554 4678999999998765444221 0011112233334577888
Q ss_pred cceEEEeeecCCC
Q 021648 289 SSELSFWIPDLSK 301 (309)
Q Consensus 289 ~~d~~~~~~~~~~ 301 (309)
++|.++.-||...
T Consensus 1323 gsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTR 1335 (1431)
T ss_pred CCccceeeccCCC
Confidence 8885555554433
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.1e-12 Score=118.77 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=132.1
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCe
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 112 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 112 (309)
..+.+||. .|...+.+..+...+...+|+|+++.+++.+.......|.+||+.+++... +....+.+....|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 35666665 355555555556678889999999999887644335679999999887543 3444456678899999987
Q ss_pred EE-EecCCCcEEEeeCC--CceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648 113 FI-SGSLDRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189 (309)
Q Consensus 113 l~-s~s~Dg~v~~Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v 189 (309)
|+ +.+.|+...+|.+. .+... . +..+.......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-~-------------------------------------------lt~~~~~~~~~ 289 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-R-------------------------------------------LTQSSGIDTEP 289 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE-E-------------------------------------------CCCCCCCCcCe
Confidence 76 66778877777542 11100 0 00011112345
Q ss_pred EEccCCCEEEEEeC-CCcEEEEE--CCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 021648 190 KFSNDGRLMLLTTM-EGHIHVLD--SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV 263 (309)
Q Consensus 190 ~~s~dg~~l~~~~~-dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~ 263 (309)
.|||||+.++..+. +|...+|. ...+.... .... .......+|||||++|+..+.++ .|++||+.+++..
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 79999998886654 35555554 44443322 1111 12233578999999999877665 6999999887643
Q ss_pred EEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 264 ASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 264 ~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
.+.. .......+|+||++.|+.++.
T Consensus 366 -~lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 366 -ALTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred -EccC-CCCccCceECCCCCEEEEEEe
Confidence 3322 233467899999998877664
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=1.2e-11 Score=109.24 Aligned_cols=256 Identities=16% Similarity=0.147 Sum_probs=159.4
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEE
Q 021648 26 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS 105 (309)
Q Consensus 26 l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~ 105 (309)
+++-..+++|.|.|..+.+.+..+.........+++++++++++.++. |+.|.++|+.+++.++.++.-. ...+++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 356667999999999999999999875444445789999999888764 7899999999999888887544 468899
Q ss_pred ecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecC--------ce-eEEECCCCcEEEEE--ECCEEEEEECCCCCcCC
Q 021648 106 LCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG--------RP-AAAYDDQGLVFAVA--FGGYIRMFDARKYEKGP 173 (309)
Q Consensus 106 ~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~ 173 (309)
+++||++++.+. .++.+.++|.++.+.+..+.... +. .....+....+... ..+.|-+.|........
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999888765 68999999999988777664432 12 22233444323333 34777777866542211
Q ss_pred ceEEEeCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeec-------------CCC------------
Q 021648 174 FDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK-------------PVS------------ 227 (309)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~-------------~~~------------ 227 (309)
......+ .......++|++++++.+ ..+..|.++|..++++....... +..
T Consensus 165 ~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 165 VTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred eeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 1122221 123457899999987664 55678888998877665432110 000
Q ss_pred --------------------------CCccceEEECCCCCEEEEE----cCCCcEEEEECCCCceEEEeecCC-CCCcEE
Q 021648 228 --------------------------RNSTLEASFSPEGMFVISG----SGDGSVYAWSVRSGKEVASWMSFD-TEPPVI 276 (309)
Q Consensus 228 --------------------------~~~~~~~~~sp~g~~l~s~----s~Dg~i~vwd~~~~~~~~~~~~~~-~~v~~l 276 (309)
.+.-.-+.-+|+++++... ...++|.|+|.++.+.+.++.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 0000125669999999998 455899999999987777764332 248899
Q ss_pred EECCCeeEEEEc
Q 021648 277 KWTPGSLMFVTG 288 (309)
Q Consensus 277 ~~~p~~~~l~s~ 288 (309)
.|+++|+.+...
T Consensus 322 ef~~dG~~v~vS 333 (369)
T PF02239_consen 322 EFNPDGKEVWVS 333 (369)
T ss_dssp EE-TTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 999999865443
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=119.47 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=159.6
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeE---EEE--ecCCCEEEEEcCCCCCceeE
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDL---VCF--TSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~---~~~--~~~~~~~~~~s~~g~d~~i~ 81 (309)
.|..-|.++.|+.+...+.+++.+..++-||+.+.+. +......-..... ... -...+.++.++. |+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~---DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSN---DGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcC---CceEE
Confidence 4666778999998877776666555555566643221 1111110000000 000 011223444443 66676
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC--ceeEEECCCC-cEEEEEEC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFG 158 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~ 158 (309)
+.+- +++.-+....|.+.+.+-.|+|||.-|+|++.||.|++|. +++....++.-.. .-++...|+. .++.+. +
T Consensus 89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred Eecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 6652 3444566788999999999999999999999999999998 5554443332111 1233444443 333332 3
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
+.+.+=.+. ....+..-..|..-+.++.++|....+++|+.|=+-++||..- ..+.+. ..|..++.+++|+|
T Consensus 166 ~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S---~~~ey~ITSva~np 237 (737)
T KOG1524|consen 166 GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTS---AAEEYAITSVAFNP 237 (737)
T ss_pred CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccC---Chhccceeeeeecc
Confidence 333332221 1122333344556688899999999999999999999999764 333322 23567889999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW 295 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~ 295 (309)
+ +.++.+|.. ++| +. ....+.|..++|||||.+++.|.+..++.
T Consensus 238 d-~~~~v~S~n-t~R---------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 238 E-KDYLLWSYN-TAR---------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred c-cceeeeeee-eee---------ec--CCCccceEEEEEcCCCceeeccccCceEE
Confidence 9 666666542 333 11 13446789999999999999998864443
No 218
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=2.3e-12 Score=116.68 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=140.2
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.+..+...+.+.+|+|||++|+.++.+ ..|.+||+.+++.... ..+...+...+|+|+++.++++.....+..|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455667778899999999999887754 4799999988765432 22333455678999999887654333345799
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 158 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (309)
+||+.+++. ..+..+........|+||++.|+..+. ++ .|.++|+.+++....
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l----------------------- 317 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL----------------------- 317 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----------------------
Confidence 999987764 334445555567789999998776553 33 344445433221000
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---cEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
.. .........++|+|++++....++ .|.+||+.++....... ........
T Consensus 318 -------------------~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-----~~~~~~p~ 371 (417)
T TIGR02800 318 -------------------TF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-----TGLDESPS 371 (417)
T ss_pred -------------------ec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-----CCCCCCce
Confidence 00 001233567999999999888775 78899987754432111 11223458
Q ss_pred ECCCCCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648 236 FSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKW 278 (309)
Q Consensus 236 ~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 278 (309)
|+|||++|+..+.++ .+++.+. +++....+....+.+..++|
T Consensus 372 ~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 372 FAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 999999998887765 4555554 34444544444444544444
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=8.9e-13 Score=106.18 Aligned_cols=155 Identities=17% Similarity=0.360 Sum_probs=102.9
Q ss_pred EEEecCCCEEEEEcCCC-------CCceeEEEEccC-CceEEEeee-cccCEEEEEecCCCCeEEE--ecCCCcEEEeeC
Q 021648 59 VCFTSHPTTVIYSSKNG-------WDESLRLLSLHD-NKYLRYFKG-HHDRVVSLSLCSSKDCFIS--GSLDRTVLLWDQ 127 (309)
Q Consensus 59 ~~~~~~~~~~~~~s~~g-------~d~~i~~~d~~~-~~~~~~~~~-h~~~v~~v~~~~~~~~l~s--~s~Dg~v~~Wd~ 127 (309)
+.|++.|++++.-.... +=+...+|-+.. +.....+.- ..++|.+++|+|+++.|+. |..++.+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 45556666554433210 112345555522 233444433 3457999999999997644 456789999997
Q ss_pred CCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC---C
Q 021648 128 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---E 204 (309)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~---d 204 (309)
+.. .+. .+ .....+.+.+||+|++++.++. .
T Consensus 91 ~~~-~i~-------------------------------------------~~--~~~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 91 KGK-KIF-------------------------------------------SF--GTQPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred ccc-EeE-------------------------------------------ee--cCCCceEEEECCCCCEEEEEEccCCC
Confidence 411 110 00 0123567899999999999874 4
Q ss_pred CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC------CCcEEEEECCCCceEEE
Q 021648 205 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVAS 265 (309)
Q Consensus 205 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~------Dg~i~vwd~~~~~~~~~ 265 (309)
|.+.+||..+.+.+.+.+ ...+..++|+|||+++++++. |..++||+. .|+.+..
T Consensus 125 G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFE-----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred cEEEEEECCCCEEeeccc-----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 679999999888876654 234568999999999999974 789999999 4666654
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=1.8e-12 Score=118.17 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=155.7
Q ss_pred CcceEEEEeCC-CCCEEEEeeCCCcEEEEEcCCCce--eee----eeccccceeEEEEecCCCE--EEEEcCCCCCceeE
Q 021648 11 NGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLR 81 (309)
Q Consensus 11 ~~~V~~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~ 81 (309)
..+|.+++|+| +..++|.|..+|.|-+||+..+.- ... ...|..++..+++..+... +++++. |+.|.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~ 318 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSIC 318 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEe
Confidence 46899999999 567889999999999999986543 222 2346667888887665444 887775 88999
Q ss_pred EEEccCCce------EEEee------ecccCEEEEEecC-CCCeEEEecCCCcEEE---eeCCCcee-----eeeeeec-
Q 021648 82 LLSLHDNKY------LRYFK------GHHDRVVSLSLCS-SKDCFISGSLDRTVLL---WDQRAEKC-----QGLLRVQ- 139 (309)
Q Consensus 82 ~~d~~~~~~------~~~~~------~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~---Wd~~~~~~-----~~~~~~~- 139 (309)
.|++..-.. ..... .-...++++.|.+ +.+.|+.|+.+|.|.- ++.+.... ......+
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 998754221 11111 1223578899987 5678999999998875 33332220 0001111
Q ss_pred -CceeEEECCC-CcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCe
Q 021648 140 -GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 140 -~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~ 216 (309)
........|= ..++.++.|-+++||.......+ ++....+...+..+++||-. ..++++..||.+.+||+....
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 1112222232 24555556999999986532222 22333333458889999976 566777889999999986433
Q ss_pred EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
..-..... ........+.|+++|+.|+.|...|++++|++..
T Consensus 476 ~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 22111111 1123345678999999999999999999999964
No 221
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=7.6e-12 Score=113.74 Aligned_cols=225 Identities=12% Similarity=0.143 Sum_probs=142.7
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
+.+..|...+...+|+|||+.|+..+.+ ..|.+||+.+++..... .........+|+|+++.+++....+.+..|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455667788999999999999877754 35888899887654322 2222344678999999887654333245788
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 158 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (309)
++|+.+++.. .+..+........|+||++.++-.+. ++ .|.++|+.+++....
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l----------------------- 326 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV----------------------- 326 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----------------------
Confidence 9999887643 45556666677889999987765543 33 344445433321100
Q ss_pred CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEE
Q 021648 159 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 235 (309)
Q Consensus 159 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 235 (309)
...+ .......+||||+.++....+ + .|.++|+.+++... +. .. .......
T Consensus 327 -------------------t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~---~~~~~p~ 380 (430)
T PRK00178 327 -------------------TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DT---SLDESPS 380 (430)
T ss_pred -------------------ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CC---CCCCCce
Confidence 0000 011234789999998877653 3 58889988776432 21 11 1122458
Q ss_pred ECCCCCEEEEEcCC---CcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 236 FSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 236 ~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
|+|||++++-.+.+ ..++++++. +.....+..+.+.+...+|+|-
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 99999999887654 357778884 3444445555566777888874
No 222
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.1e-12 Score=114.06 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=135.8
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCC-C--cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDD-E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D-~--~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
.+...+.+..|+|||++|+-.+.+ + .|.+||+.+++.... ..........+|+|+++.++++........|.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 345567789999999998877653 3 477889887764322 211222345789999998877543222346888898
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEec-CCCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 162 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (309)
++++. ..+..+........|+||++.++..+ .++. |.++|+.+++....
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L--------------------------- 345 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL--------------------------- 345 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE---------------------------
Confidence 87764 44455656667889999999776554 3343 33334433221100
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
+..+. .....++||||++++..+.+ + .|.++|+.++.... +... .......|+||
T Consensus 346 ---------------t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~----~~d~~ps~spd 403 (448)
T PRK04792 346 ---------------TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST----RLDESPSVAPN 403 (448)
T ss_pred ---------------ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC----CCCCCceECCC
Confidence 00000 11234789999988776553 3 45667877765432 1111 11123479999
Q ss_pred CCEEEEEcCCC---cEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 240 GMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 240 g~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
|++|+..+.++ .+++++. +++....+..+.+.+...+|+|-
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 99987766543 3778887 55556666666667788889883
No 223
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=3.3e-10 Score=98.32 Aligned_cols=242 Identities=14% Similarity=0.187 Sum_probs=152.3
Q ss_pred eCCCCCEEEEeeC----------CCcEEEEEcCCCceeeeeecccc-------ceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 19 FHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 19 ~s~~~~~l~t~s~----------D~~v~iWd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
++|||+.|..+.. +..|.+||+.+++.+..+..... ....++++++++.++..... -+..+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-PSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-CCCEEE
Confidence 8999998766665 78999999999999988875322 12368899999988876432 278999
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee--eeee--c------CceeEEECCCCc
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRV--Q------GRPAAAYDDQGL 151 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~--~------~~~~~~~~~~~~ 151 (309)
+.|+++++.+..+.-- +...-...+++. .+ .-+.||......+.+..... ...+ . .++ .....++.
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~ 207 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGR 207 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCc
Confidence 9999999887765431 111111111111 11 22235544433222111111 1111 0 111 11222567
Q ss_pred EEEEEECCEEEEEECCCCCcC---CceEEEeCC-----CCCCCeEEEEccCCCEEEEEe----------CCCcEEEEECC
Q 021648 152 VFAVAFGGYIRMFDARKYEKG---PFDIFSVGG-----DISDANVVKFSNDGRLMLLTT----------MEGHIHVLDSF 213 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~-----~~~~~~~v~~s~dg~~l~~~~----------~dg~v~i~d~~ 213 (309)
.+-.++.|.|.+.|+...... +........ ......-++++|+++.+.... ..++|.++|..
T Consensus 208 ~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 208 LVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred EEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 777777799999996442211 122222111 123334589999988776632 22589999999
Q ss_pred CCeEeEEeeecCCCCCccceEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEeecC
Q 021648 214 RGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSF 269 (309)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~ 269 (309)
+++.+..+.. ...++.++++|||+ +|++.. .++.|.+.|+.+++.++++...
T Consensus 288 t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v 341 (352)
T TIGR02658 288 TGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQL 341 (352)
T ss_pred CCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence 9999987764 24667899999999 888775 6788999999999999887443
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=7.9e-12 Score=102.87 Aligned_cols=161 Identities=14% Similarity=0.241 Sum_probs=116.4
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcC-CCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
...+|.+|.+.++ +++.. ..+.|.||... ..+.++.++....+-..++..|....-+.+..+-.-|+|++-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 3567888888764 55555 57899999987 55667777655444445556565443333322333589999999776
Q ss_pred ce--EEEeeecccCEEEEEecCCCCeEEEecCCCc-EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648 89 KY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 165 (309)
Q Consensus 89 ~~--~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~-v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 165 (309)
+. ...+..|...|.+++++-+|..+||+|..|| ||+||.+++..+..++..
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-------------------------- 223 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-------------------------- 223 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--------------------------
Confidence 54 5778899999999999999999999999996 689998888665443321
Q ss_pred CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648 166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~ 214 (309)
.....+.+++||||..+|++++..|+++||.++.
T Consensus 224 ---------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 ---------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ---------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 1224567888888888888888888888887654
No 225
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.8e-12 Score=109.32 Aligned_cols=246 Identities=14% Similarity=0.184 Sum_probs=168.0
Q ss_pred eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC------CceEEEeeecc-cCEEEEEecCCCCeEEEec
Q 021648 45 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYLRYFKGHH-DRVVSLSLCSSKDCFISGS 117 (309)
Q Consensus 45 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~------~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s 117 (309)
|.+.+.+|..-|..+.|+.++..++++ |-|..+++|.++. .+++.....|+ ..|.+++|...++.+.+|+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SG---GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASG---GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeec---CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 445567777778999999997777755 4589999999853 34555554444 8899999999889999999
Q ss_pred CCCcEEEeeCCCceeeeeeeecCcee----EEECCCCcEEE-EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648 118 LDRTVLLWDQRAEKCQGLLRVQGRPA----AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 192 (309)
Q Consensus 118 ~Dg~v~~Wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s 192 (309)
.+++|..-|+++.+.+.+........ ...+|...+++ +..++.+.+||.|.... +...+.++........+.|.
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeec
Confidence 99999999999887766554332211 22344444444 45679999999986443 34445555555566778899
Q ss_pred cCC-CEEEEEeCCCcEEEEECCCCe--EeEEeeecCCCC--CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648 193 NDG-RLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 193 ~dg-~~l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~--~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
|.- .+|++.+..+-+.+||.+... ++.......... ..-..+.|+|+|+.+++--.-.+=-.||+.+.++..-..
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 964 677888888999999987532 111111111111 122468899999999988777777889988765533222
Q ss_pred cCC-------CCCcEEEECCCeeEEEEccce--EEEe
Q 021648 268 SFD-------TEPPVIKWTPGSLMFVTGSSE--LSFW 295 (309)
Q Consensus 268 ~~~-------~~v~~l~~~p~~~~l~s~~~d--~~~~ 295 (309)
.|+ +.+.+.+|.-|.. +++|+.+ +++|
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIW 319 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEE
Confidence 333 3456677765544 8888887 5666
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=3.6e-14 Score=129.40 Aligned_cols=244 Identities=16% Similarity=0.247 Sum_probs=178.4
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
.+.+++||++.|+.++.+.+..++|++|.|.-||+|-+.++..+..+.+|...|+.++|+|-. ++ +-|+++++
T Consensus 224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----ss---s~dgt~~~ 296 (1113)
T KOG0644|consen 224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SS---SDDGTCRI 296 (1113)
T ss_pred hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cC---CCCCceEe
Confidence 456789999999999999999999999999999999999999999999999999999999864 22 34899999
Q ss_pred EEccCCceEEE---ee-ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeee-ecCceeEEECCCCcEEEEEE
Q 021648 83 LSLHDNKYLRY---FK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVAF 157 (309)
Q Consensus 83 ~d~~~~~~~~~---~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (309)
||..-...+.. ++ .-.+.+-++.|...+..++|++.|+.-+.|.+..-.+..... +... ...-+...++...
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~---ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR---SSDLSSIVVTARN 373 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec---cccccccceeeee
Confidence 99762111100 11 122456777888888899999999999999764332211110 0000 0011123444456
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
+-.+++|++-.+.. .+.+.++...+..+.+.|=. +...+++.||...|||+..|..++.+.. .........|
T Consensus 374 ~~~~~vwnl~~g~l----~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl~d~kF 446 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQL----LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKLVDGKF 446 (1113)
T ss_pred eeEeeeeecccchh----hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---ccceeecccc
Confidence 67888898765421 23445666778888998855 4555789999999999999988877663 2456778899
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
|+||+.++..-.-|.++|.....++..
T Consensus 447 Sqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 447 SQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCceEecCCCCCceEEeccCCCccc
Confidence 999999999988899999987665543
No 227
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=1.1e-12 Score=107.96 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=148.9
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc---eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648 51 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 127 (309)
Q Consensus 51 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~ 127 (309)
....++++-||+++...++.+.. ...+-+|.....+ ...+++.|...|++|+|+|..+.++||+.|+.-.+|..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eccCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34457889999999999988764 5689999876655 57789999999999999999999999999999999986
Q ss_pred C-CceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc
Q 021648 128 R-AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH 206 (309)
Q Consensus 128 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~ 206 (309)
. .+....++. ++.+ .-.+.+|.++|....+++|+....
T Consensus 85 ~~~~~Wkptlv--------------------------------------LlRi---NrAAt~V~WsP~enkFAVgSgar~ 123 (361)
T KOG1523|consen 85 PSGGTWKPTLV--------------------------------------LLRI---NRAATCVKWSPKENKFAVGSGARL 123 (361)
T ss_pred CCCCeecccee--------------------------------------EEEe---ccceeeEeecCcCceEEeccCccE
Confidence 3 232221111 1111 123678999999999999999999
Q ss_pred EEEEECCCCeEe--EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC-----CC-------------CceEEEe
Q 021648 207 IHVLDSFRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-----RS-------------GKEVASW 266 (309)
Q Consensus 207 v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~-----~~-------------~~~~~~~ 266 (309)
|.||-.+.-+-- .....++ ....|.+++|+|++-.+++||.|+.+||+.. ++ |+.+.++
T Consensus 124 isVcy~E~ENdWWVsKhikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 124 ISVCYYEQENDWWVSKHIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred EEEEEEecccceehhhhhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 999865332111 0001112 2456788999999999999999999999984 11 1122333
Q ss_pred ecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648 267 MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 302 (309)
Q Consensus 267 ~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~ 302 (309)
..-.+-+..+.|+|+|..|+-.+-|-.+-..+...+
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 334567888999999999988877755555554444
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=6.9e-12 Score=105.77 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=170.4
Q ss_pred CcceEEEEeCCCC--CEEEEeeCCCcEEEEEcCCCceeeee------eccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 11 NGRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 11 ~~~V~~i~~s~~~--~~l~t~s~D~~v~iWd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
...|+++.|..++ ..+...+.|..+...++....+...+ .....++..+... ++ .++++.. ++.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~---sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVS---SGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEec---CCcEEE
Confidence 3467778886544 56777778888888887765554332 2223333333332 22 4444433 678999
Q ss_pred EEccCCc----eEEEeeecccCEEEEEecCC-CCeEEEecCC--CcEEEeeCCCceeeee-eeecC------cee----E
Q 021648 83 LSLHDNK----YLRYFKGHHDRVVSLSLCSS-KDCFISGSLD--RTVLLWDQRAEKCQGL-LRVQG------RPA----A 144 (309)
Q Consensus 83 ~d~~~~~----~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~D--g~v~~Wd~~~~~~~~~-~~~~~------~~~----~ 144 (309)
|..+.+. .+..+.-+ ..+..+.-++. ...+++|+.. ..+++||+++.+.+.. ..++. .+. .
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 9887432 22223323 33445555553 4567779988 8999999987643321 11111 111 1
Q ss_pred EECC---CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEE-
Q 021648 145 AYDD---QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST- 220 (309)
Q Consensus 145 ~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~- 220 (309)
.|-+ ...++++..-+.+|+||.+...+ |+..+.+ ....+.++...|+|+++.++..-|.+..||++.+.++..
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCc-ceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 2222 34566666779999999996543 4444433 345788999999999999999999999999999988765
Q ss_pred eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCe
Q 021648 221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 282 (309)
Q Consensus 221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 282 (309)
+. ...+.+..+-.+|.++++|++|.|..+||+|+.+.+.+... ...+.+++|.+.++-
T Consensus 286 ~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 286 LK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDDV 343 (412)
T ss_pred cC---CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCCc
Confidence 33 23467778899999999999999999999999996655432 234567888887654
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=4.4e-13 Score=107.56 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=140.4
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC--------------Cceeeeeeccccc-------------------
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------------ATCLKTINSKKYG------------------- 55 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~--------------~~~~~~~~~~~~~------------------- 55 (309)
.|...|+.+.--|+ ..|.|-+.|.++.+|++.. +-|...+......
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 45667888888886 5788999999999999875 2222211100000
Q ss_pred ------e------------eEEEEe---cCCCEEEEEcCCCCCceeEEEEccCCc----------eEEEeeecccCEEEE
Q 021648 56 ------V------------DLVCFT---SHPTTVIYSSKNGWDESLRLLSLHDNK----------YLRYFKGHHDRVVSL 104 (309)
Q Consensus 56 ------v------------~~~~~~---~~~~~~~~~s~~g~d~~i~~~d~~~~~----------~~~~~~~h~~~v~~v 104 (309)
+ ..+|+. ..+.+++..+ +-.++.+-+||+.++. .......|..+|.++
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla-GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA-GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEE-eccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 0 122232 1233333322 2237899999998873 233445799999999
Q ss_pred EecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCC
Q 021648 105 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS 184 (309)
Q Consensus 105 ~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 184 (309)
++.+.-..=++++.+..+..|++.-......+ . +.+ ++ ...
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~--~-------------------~e~----------------~l--knp 252 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQI--R-------------------KEI----------------TL--KNP 252 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccc--c-------------------ceE----------------Ee--cCC
Confidence 99876555678888888888876422100000 0 000 00 123
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
.+..+.+=||++.+|+++=|++||||..++...+..+.. |...+.+++|+||...+|+||.|+.|.+|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 466788999999999999999999999999988877664 4577889999999999999999999999986
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=7.7e-12 Score=110.24 Aligned_cols=239 Identities=17% Similarity=0.259 Sum_probs=159.3
Q ss_pred ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecc-cCEEEEEe-cCCCCeEEEecCCCcEEEeeCCCcee
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH-DRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKC 132 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~-~~v~~v~~-~~~~~~l~s~s~Dg~v~~Wd~~~~~~ 132 (309)
..+.+.++|||.+++++. -+...|++||+.+-. ++ |..|. +.+..+.. +.|-..++--..|++|.+-..-..
T Consensus 53 ast~ik~s~DGqY~lAtG--~YKP~ikvydlanLS-LK-FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-- 126 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATG--TYKPQIKVYDLANLS-LK-FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-- 126 (703)
T ss_pred ccceeEecCCCcEEEEec--ccCCceEEEEcccce-ee-eeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence 356788999999988764 578899999997643 22 34454 34444443 444444555556888887642211
Q ss_pred eeeeeec--CceeEEECC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648 133 QGLLRVQ--GRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 209 (309)
Q Consensus 133 ~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i 209 (309)
...++++ +.. ..|+. .--++.++.+..|+-+++... .+ +..+......+++|.+++...+|++|+.+|.|-.
T Consensus 127 hy~~RIP~~GRD-m~y~~~scDly~~gsg~evYRlNLEqG---rf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 127 HYRTRIPKFGRD-MKYHKPSCDLYLVGSGSEVYRLNLEQG---RF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred eeeeecCcCCcc-ccccCCCccEEEeecCcceEEEEcccc---cc-ccccccccccceeeeecCccceEEecccCceEEE
Confidence 1122222 221 33432 334666777778888887543 22 1122233467899999999999999999999999
Q ss_pred EECCCCeEeEEeeecCC---C-----CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-ecCCCCCcEEEECC
Q 021648 210 LDSFRGTLLSTYNVKPV---S-----RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTP 280 (309)
Q Consensus 210 ~d~~~~~~~~~~~~~~~---~-----~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~~p 280 (309)
||.+......++..... + ...|.++.|+.+|-.++.|..+|.+.|||+++.+++..- ....-+|..+.|.+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 99988776666553221 1 124788999999999999999999999999988775432 23345678899988
Q ss_pred Ce--eEEEEccc-eEEEeeecCCCccc
Q 021648 281 GS--LMFVTGSS-ELSFWIPDLSKLGA 304 (309)
Q Consensus 281 ~~--~~l~s~~~-d~~~~~~~~~~~~~ 304 (309)
.+ ..++|..+ .+++|...-++...
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCcee
Confidence 63 45666554 48999887665543
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.2e-12 Score=105.64 Aligned_cols=223 Identities=17% Similarity=0.317 Sum_probs=147.8
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc-ccceeEEEEecCCCE-EEEEcCCCCCceeEEEEccC---
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHD--- 87 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~s~~g~d~~i~~~d~~~--- 87 (309)
-+..++|+|.-.-+|.+..|-+||+||-.. ++...+... +..|.+++|.|.+.. ++.+.. .-|.+|....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCcccc
Confidence 467889999666789999999999999776 555555443 445899999996654 444443 3489997532
Q ss_pred -Cce----------EEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648 88 -NKY----------LRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 155 (309)
Q Consensus 88 -~~~----------~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
+.. +....|| ..|+++.|.+||..++++|. |..|.+||..++.++.....
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----------------- 236 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----------------- 236 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-----------------
Confidence 111 2223345 68999999999999999985 67999999988765433210
Q ss_pred EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceE
Q 021648 156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 234 (309)
....+.-+.+||||.++.+++-|+.-++|+... -....- ....+.+...
T Consensus 237 --------------------------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw----~lgsgrvqta 286 (445)
T KOG2139|consen 237 --------------------------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW----ILGSGRVQTA 286 (445)
T ss_pred --------------------------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce----eccCCceeee
Confidence 012345678999999999999999999995432 222211 1233477788
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCC-c--------------eEEEee------c---CCCCCcEEEECCCeeEEEEcc
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSG-K--------------EVASWM------S---FDTEPPVIKWTPGSLMFVTGS 289 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~-~--------------~~~~~~------~---~~~~v~~l~~~p~~~~l~s~~ 289 (309)
+|+|+|++|+-+.. |.=++|.+.-. + .+..+. + .-+++-+++|.|.|.+++.--
T Consensus 287 cWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 287 CWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 99999988765543 22334443210 0 111111 1 135667899999988776643
No 232
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=7.3e-10 Score=96.18 Aligned_cols=260 Identities=11% Similarity=0.038 Sum_probs=158.6
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-------CCCceeEEEEccCCceEEEeeecc-------
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLRYFKGHH------- 98 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~i~~~d~~~~~~~~~~~~h~------- 98 (309)
++|.+.|..+++.+.++.....+-. + ++++++.++.+... --+..|.+||.++.+.+..+.--.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999999887655443 4 99999988877640 026789999999999887776321
Q ss_pred cCEEEEEecCCCCeEEEec--CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648 99 DRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI 176 (309)
Q Consensus 99 ~~v~~v~~~~~~~~l~s~s--~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 176 (309)
......+++|||+++..+. .+..|-+.|+.+++.+..+.++.-...........+..+.|+......+..........
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 2234678899999887665 37899999999999888776654222211222222223334333322211100000000
Q ss_pred EEe-CCCCCC--CeEEEEcc-CCCEEEEEeCCCcEEEEECCC-----CeEeEEeeecCC----CCCccceEEECCCCCEE
Q 021648 177 FSV-GGDISD--ANVVKFSN-DGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKPV----SRNSTLEASFSPEGMFV 243 (309)
Q Consensus 177 ~~~-~~~~~~--~~~v~~s~-dg~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~----~~~~~~~~~~sp~g~~l 243 (309)
..+ .+.... .+- .|++ +|+++..... |+|++.|+.. ......+..... .....--++++|+|+++
T Consensus 185 ~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 185 TEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 000 000000 000 3466 7776655544 9999999533 222222211100 01111128999999988
Q ss_pred EEEc----------CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEEcc---ceEEEeee
Q 021648 244 ISGS----------GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSFWIP 297 (309)
Q Consensus 244 ~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s~~---~d~~~~~~ 297 (309)
+... ..+.|-++|+.+++.+..+.. ...+..++++||++ +|.... .++.+...
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 8743 124799999999998888753 45788999999998 665544 23665554
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=6.1e-11 Score=107.39 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=132.8
Q ss_pred cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648 34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 113 (309)
Q Consensus 34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 113 (309)
.|.++|... ...+.+..+...+...+|+|+++.+++++..+....|.+||+.+++.. .+..+.+.+.++.|+||++.|
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEE
Confidence 567777753 334445555555777889999999988765443468999999887643 334466667788999999866
Q ss_pred E-EecCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE
Q 021648 114 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190 (309)
Q Consensus 114 ~-s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 190 (309)
+ +.+.++ .|.+||+.+++...... .........
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------------------~~~~~~~~~ 284 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTN--------------------------------------------GPGIDTEPS 284 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCC--------------------------------------------CCCCCCCEE
Confidence 5 445444 46677765443211100 001112346
Q ss_pred EccCCCEEEEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceEE
Q 021648 191 FSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVA 264 (309)
Q Consensus 191 ~s~dg~~l~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~ 264 (309)
|+|||+.++..+.. + .|+++|+.+++... +.. .........|+|+|++++.++.++ .|.+||+.+++. .
T Consensus 285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~ 359 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R 359 (417)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E
Confidence 88999988766543 2 68888887665432 221 223445679999999999998876 899999987543 2
Q ss_pred EeecCCCCCcEEEECCCeeEEEEccc
Q 021648 265 SWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 265 ~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
.+.. .......+|+||++.|+..+.
T Consensus 360 ~l~~-~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 360 VLTD-TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred EccC-CCCCCCceECCCCCEEEEEEe
Confidence 2222 223455689999988777665
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=1.9e-12 Score=104.30 Aligned_cols=114 Identities=11% Similarity=0.269 Sum_probs=92.0
Q ss_pred CCcceEEEEeCCCCCEEEE--eeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC
Q 021648 10 YNGRISSMDFHKSSSYLVT--ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 87 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t--~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~ 87 (309)
.+++|.+++|+|+|+.+|. |..++.|.+||+. ++.+..+. ...+..+.|+|+|++++.++.++..+.+.+||+.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 3567999999999998654 4468899999996 66666665 34567899999999999987666678999999998
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecC------CCcEEEeeCC
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQR 128 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~------Dg~v~~Wd~~ 128 (309)
.+.+..+. | ..+..++|+|||++|+++.. |..++||++.
T Consensus 135 ~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 135 KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 87776654 3 35789999999999999864 7888999974
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=119.00 Aligned_cols=95 Identities=22% Similarity=0.399 Sum_probs=82.5
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 90 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~ 90 (309)
++.|+..+|+|||++||+.|.||.+||+|..+.+.+.....==.+..++||+||+++++++ |.|.-|.||.++.++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG---GEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG---GEDDLVTVWSFEERRV 366 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec---CCcceEEEEEeccceE
Confidence 4589999999999999999999999999999877655443322357899999999999986 4588999999999999
Q ss_pred EEEeeecccCEEEEEecC
Q 021648 91 LRYFKGHHDRVVSLSLCS 108 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~ 108 (309)
+..-+||+..|..|+|.|
T Consensus 367 VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccccccceeeEeecc
Confidence 999999999999999984
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=5.6e-09 Score=92.10 Aligned_cols=271 Identities=14% Similarity=0.194 Sum_probs=164.0
Q ss_pred EEEeeCC----CcEEEEEc--CCCcee--eeeeccccceeEEEEecCCCEEEEEcCCC-CCceeEEEEccCC--c--eEE
Q 021648 26 LVTASDD----ESIRLYDV--TAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDN--K--YLR 92 (309)
Q Consensus 26 l~t~s~D----~~v~iWd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-~d~~i~~~d~~~~--~--~~~ 92 (309)
+..|+++ +.|.+|++ ++++.. ..+. ......-++++++++.++++...+ .++.|..|.+... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3456665 68888887 344332 2222 222356688999998888876543 4789999998764 3 222
Q ss_pred EeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCC-ceeeee---eee---------c--Cc-eeEEECCCCcEEEE
Q 021648 93 YFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGL---LRV---------Q--GR-PAAAYDDQGLVFAV 155 (309)
Q Consensus 93 ~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~-~~~~~~---~~~---------~--~~-~~~~~~~~~~~~~~ 155 (309)
.........-.++++|++++|+.+. .+|++.++++.. +..... +.. + .+ ..+.+.|++..+.+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 2222233456788999999888886 489999999876 333222 111 0 11 24567777765555
Q ss_pred EE--CCEEEEEECCCCCcCCceE-EEeC-CCCCCCeEEEEccCCCEE-EEEeCCCcEEEEECC--CCeEeE--EeeecCC
Q 021648 156 AF--GGYIRMFDARKYEKGPFDI-FSVG-GDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSF--RGTLLS--TYNVKPV 226 (309)
Q Consensus 156 ~~--~~~i~~~d~~~~~~~~~~~-~~~~-~~~~~~~~v~~s~dg~~l-~~~~~dg~v~i~d~~--~~~~~~--~~~~~~~ 226 (309)
.. .+.|.+|++..... .+.. ..+. ......+-++|+|+|+++ +....+++|.+++.. ++.+.. .....+.
T Consensus 161 ~dlG~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTG-KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCc-eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 53 46899999865331 1211 1111 222456789999999876 455678899999887 454332 2221111
Q ss_pred ---CCCccceEEECCCCCEEEEEc-CCCcEEEEECC--CCc--eEEEeecCCCCCcEEEECCCeeEEEEccc---eEEEe
Q 021648 227 ---SRNSTLEASFSPEGMFVISGS-GDGSVYAWSVR--SGK--EVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFW 295 (309)
Q Consensus 227 ---~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~~p~~~~l~s~~~---d~~~~ 295 (309)
.......++++|||++|+++. .+++|.+|++. +++ .+..+......+..++++|++++|+.+.. .+.++
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 112456789999999988774 56789999993 233 23444444445788999999998877664 37777
Q ss_pred eec
Q 021648 296 IPD 298 (309)
Q Consensus 296 ~~~ 298 (309)
..+
T Consensus 320 ~~d 322 (345)
T PF10282_consen 320 DID 322 (345)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.6e-10 Score=105.06 Aligned_cols=214 Identities=11% Similarity=0.067 Sum_probs=131.7
Q ss_pred cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648 34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 113 (309)
Q Consensus 34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 113 (309)
.|.++|.+.+ ..+.+..+...+....|+|+++.+++.+.......|.+||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 3666677644 445554555567888999999999887654334579999998876433 33334445578999999877
Q ss_pred E-EecCCC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE
Q 021648 114 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190 (309)
Q Consensus 114 ~-s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 190 (309)
+ +.+.++ .|.+||+++++..... ..........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt--------------------------------------------~~~~~~~~~~ 293 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVT--------------------------------------------NHPAIDTEPF 293 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcc--------------------------------------------cCCCCcCCeE
Confidence 6 555555 4556666544321100 0001123457
Q ss_pred EccCCCEEEEEeC-C--CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---cEEEEECCCCceEE
Q 021648 191 FSNDGRLMLLTTM-E--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEVA 264 (309)
Q Consensus 191 ~s~dg~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---~i~vwd~~~~~~~~ 264 (309)
|+|||+.++..+. + ..|+++|+.+++... +... ........|+|||++|+..+.++ .|.+||+.+++. .
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~ 368 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R 368 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-E
Confidence 8999998776654 2 357778887766432 2111 12223468999999998876543 588899988754 2
Q ss_pred EeecCCCCCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648 265 SWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPDL 299 (309)
Q Consensus 265 ~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~~ 299 (309)
.+. .........|+|||++++..+.+ ..++..++
T Consensus 369 ~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 369 ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 222 22223356899999988766542 44554433
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=2.5e-11 Score=101.04 Aligned_cols=245 Identities=20% Similarity=0.321 Sum_probs=154.3
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-----eeeeeecccc------------ceeEEEEecCCCE--EEEE
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKY------------GVDLVCFTSHPTT--VIYS 71 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-----~~~~~~~~~~------------~v~~~~~~~~~~~--~~~~ 71 (309)
..-|++|.|+..|.+||||..+|.|-++.-.... -..++..|.. .+..+.+.++++. ++.+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999543211 1122222321 2445566665542 2322
Q ss_pred cCCCCCceeEEEEccCCce-----------------------------------EEEe-eecccCEEEEEecCCCCeEEE
Q 021648 72 SKNGWDESLRLLSLHDNKY-----------------------------------LRYF-KGHHDRVVSLSLCSSKDCFIS 115 (309)
Q Consensus 72 s~~g~d~~i~~~d~~~~~~-----------------------------------~~~~-~~h~~~v~~v~~~~~~~~l~s 115 (309)
. -|.+|++|-+..... ++.+ .+|+..|+++.++.|..+++|
T Consensus 105 t---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 105 T---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred c---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 2 289999998743211 1222 268889999999999999998
Q ss_pred ecCCCcEEEeeCCCce-eeeeeee--cC-------ceeEEECCC--CcEEEEEECCEEEEEECCCCCcCC--ceEEEe--
Q 021648 116 GSLDRTVLLWDQRAEK-CQGLLRV--QG-------RPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEKGP--FDIFSV-- 179 (309)
Q Consensus 116 ~s~Dg~v~~Wd~~~~~-~~~~~~~--~~-------~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~-- 179 (309)
+. |=.|.+|.++-.. +...+.. .. ..+..++|. ..+...++.|+|++-|+|...... ..++..
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 85 7789999876322 1111111 10 122344443 345555677999999998421100 001110
Q ss_pred --------CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECC-CCeEeEEeeecCCC---------CCcc---ceEEECC
Q 021648 180 --------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVS---------RNST---LEASFSP 238 (309)
Q Consensus 180 --------~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~---------~~~~---~~~~~sp 238 (309)
....+.+..+.||++|+++++... -+|++||+. ....+.++..+... ..++ ..++|+-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 111246778899999999987643 479999983 34555555433111 1122 3589999
Q ss_pred CCCEEEEEcCCCcEEEEECCCC
Q 021648 239 EGMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
++.+++|||....++++++..+
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996554
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.8e-12 Score=113.57 Aligned_cols=205 Identities=15% Similarity=0.173 Sum_probs=135.8
Q ss_pred EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---ceeEEE---CCCCcEEEEEECCEEEEEE
Q 021648 92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAY---DDQGLVFAVAFGGYIRMFD 165 (309)
Q Consensus 92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~i~~~d 165 (309)
..+.||++-|++++|+.+|.+|+|||.|-.+.+||.-..+..+.+.... ..++.+ ..+..+++++.|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4588999999999999999999999999999999987777666664332 112222 2445677777899999999
Q ss_pred CCCCCcCC------ceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEee--------ecCCCCCc
Q 021648 166 ARKYEKGP------FDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYN--------VKPVSRNS 230 (309)
Q Consensus 166 ~~~~~~~~------~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~--------~~~~~~~~ 230 (309)
+...+.+. ........|...|..++..|++ ..+.+++.||+++-+|++....-..-+ ..+. --.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~-lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ-LIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh-hhe
Confidence 87532211 1122233455567778889998 889999999999999987532111100 0000 012
Q ss_pred cceEEECCC-CCEEEEEcCCCcEEEEECCCC--------c----------eEEEe-ecCC-----------CCCcEEEEC
Q 021648 231 TLEASFSPE-GMFVISGSGDGSVYAWSVRSG--------K----------EVASW-MSFD-----------TEPPVIKWT 279 (309)
Q Consensus 231 ~~~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~--------~----------~~~~~-~~~~-----------~~v~~l~~~ 279 (309)
.-++..+|. ..+||.|+.|-..++||.+.. + ++..+ ++|- ...+-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 235788995 578899999999999995321 1 12222 1222 113458899
Q ss_pred CCee-EEEEcc-ceEEEeee
Q 021648 280 PGSL-MFVTGS-SELSFWIP 297 (309)
Q Consensus 280 p~~~-~l~s~~-~d~~~~~~ 297 (309)
|+|. +|++-+ +-++++..
T Consensus 283 pNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred CCCcEEEEeeCCeEEEEEee
Confidence 9974 666644 44777754
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=1.1e-12 Score=112.78 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=141.8
Q ss_pred cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648 12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 91 (309)
Q Consensus 12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~ 91 (309)
..|..+.|-|..-+|++++.-|.++.-|+.+|+....+......+..++..|-..-+-.+- ..++|.+|...+.+++
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~skePL 286 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNSKEPL 286 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCCcchH
Confidence 5677889999988999999999999999999999988887777777777777665555543 3789999999999998
Q ss_pred EEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEEC-CCC-
Q 021648 92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA-RKY- 169 (309)
Q Consensus 92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~- 169 (309)
..+..|.++|.++++.++|++++|++.|+.++|||++.-.....+..+.......-.+..+++++.+..+.+|.- ...
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGS 366 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCC
Confidence 888899999999999999999999999999999999876544444332221222223556788889999999952 221
Q ss_pred --CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEE
Q 021648 170 --EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 209 (309)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i 209 (309)
...++...... ..|..+.|.|-...|-.|-..|--.+
T Consensus 367 ~~~~~pYm~H~~~---~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 367 GHGETPYMNHRCG---GPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred CCCCcchhhhccC---cccccceeccHHHeeeccccCCceeE
Confidence 11122222222 36777888887766666655554333
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.4e-10 Score=99.12 Aligned_cols=280 Identities=14% Similarity=0.244 Sum_probs=172.3
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEE-------cCCCCCceeEEEEc
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-------SKNGWDESLRLLSL 85 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------s~~g~d~~i~~~d~ 85 (309)
..+..+++++|+++|-+ .+..++|++..++..+.+.... .+..+-|+|-++++.+- ..+.....+++|++
T Consensus 36 ~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 35677889988777655 6778999999887544333332 46778888888766421 11122457889999
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeeeeecCceeEEECCC--CcEEEEE---E--
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQ--GLVFAVA---F-- 157 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~---~-- 157 (309)
+++.....++.....-+...|+.|..+ +.---.+.+.+++...-+ ....++..+......++. ...+++- .
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred ccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 986555555443333378888887643 222335578888765422 122222222222222222 1111111 0
Q ss_pred -CCEEEEEECCCC-------------------------------------C-------cCCceEEEeCC--------CCC
Q 021648 158 -GGYIRMFDARKY-------------------------------------E-------KGPFDIFSVGG--------DIS 184 (309)
Q Consensus 158 -~~~i~~~d~~~~-------------------------------------~-------~~~~~~~~~~~--------~~~ 184 (309)
-..++||...-. + ...+..+...+ ...
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 123444432100 0 00111111111 136
Q ss_pred CCeEEEEccCCCEEE--EEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCC
Q 021648 185 DANVVKFSNDGRLML--LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS 259 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~--~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~ 259 (309)
+|.+++++|+|+.++ .|-+--++.|||++ +.++..+. .++-..+-|+|.|++|+-+|-+ |.+-|||+.+
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 789999999997654 46678899999975 56665442 2344568899999999999876 7999999999
Q ss_pred CceEEEeecCCCCCcEEEECCCeeEEEEccc------e--EEEeeecCCCccc
Q 021648 260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS------E--LSFWIPDLSKLGA 304 (309)
Q Consensus 260 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~------d--~~~~~~~~~~~~~ 304 (309)
.+++..+..-. -+-..|+|||++|.++.- | .++|.-.++.|-+
T Consensus 346 ~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 346 RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 88888776533 467889999999887663 2 8889888877643
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.2e-10 Score=102.58 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=132.9
Q ss_pred ecCCCcceEEEEeCCCCCE--E-EEeeCCCc--EEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC-C-CCce
Q 021648 7 FRDYNGRISSMDFHKSSSY--L-VTASDDES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-G-WDES 79 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~--l-~t~s~D~~--v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-g-~d~~ 79 (309)
+......+.+-.|+|||+. + .+.-.++. |-+.++.+|+..+... .+.......|+|||+.+++.+.. | .|-.
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCccee
Confidence 3334455667799999975 2 24444554 4455777765433322 22223457899999999887632 1 2323
Q ss_pred eEEEEccCC---ceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648 80 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 155 (309)
Q Consensus 80 i~~~d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
+..|++..+ +......++.+......|+|||+.|+..+ .+|...+|.+.... .
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~-------~---------------- 315 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP-------E---------------- 315 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc-------c----------------
Confidence 444676652 33333333334456789999999777655 45655555321100 0
Q ss_pred EECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEEEEECCCCeEeEEeeecCCCCCccc
Q 021648 156 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL 232 (309)
Q Consensus 156 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~ 232 (309)
++..+. +......+....+||||+.|+..+.+ ..|.+||+.+++...... ....+.
T Consensus 316 --g~~~~~---------------lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~ 374 (428)
T PRK01029 316 --GQSPRL---------------LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKE 374 (428)
T ss_pred --ccceEE---------------eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCcc
Confidence 000000 00011123456899999998876543 469999998876543211 112345
Q ss_pred eEEECCCCCEEEEEcC---CCcEEEEECCCCceEEEeecCCCCCcEEEECCC
Q 021648 233 EASFSPEGMFVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 233 ~~~~sp~g~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 281 (309)
...|+|||++|+..+. ...|++||+.+++.. .+....+.+...+|+|-
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCC
Confidence 6789999998875433 357899999876543 33334456677888885
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.1e-10 Score=97.81 Aligned_cols=225 Identities=15% Similarity=0.162 Sum_probs=132.9
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeC-CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 86 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~-D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~ 86 (309)
.|| ..|+++.|.+||..++|+|. |..++|||++++.++........++..+-|+||+..++++.. |...++|+.+
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~---davfrlw~e~ 268 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC---DAVFRLWQEN 268 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc---cceeeeehhc
Confidence 455 68999999999999999996 779999999999887766444556889999999999988765 8899999765
Q ss_pred CCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648 87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 165 (309)
Q Consensus 87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 165 (309)
.......-.--.++|...+|+|.|++|+-+.. |.-+++.+... ++....+.+.. -...-+-|
T Consensus 269 q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~----------------k~~lliaD 331 (445)
T KOG2139|consen 269 QSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSI----------------KRVLLIAD 331 (445)
T ss_pred ccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccc----------------eeeeeecc
Confidence 43211111123348999999999996544432 22234432211 11000000000 00011112
Q ss_pred CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC--------cEEEEECCCCeEeEEeeecCCCCCccceEEEC
Q 021648 166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 237 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg--------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s 237 (309)
+...... ..... .-....++++.|.|.++++.-..+ .|.+||.+......-....-.......-++|+
T Consensus 332 L~e~ti~-ag~~l---~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~ 407 (445)
T KOG2139|consen 332 LQEVTIC-AGQRL---CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG 407 (445)
T ss_pred chhhhhh-cCccc---ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence 1100000 00000 013467889999999998765433 46778876544333221111111223346777
Q ss_pred C---CCCEEEEEcCCCcEEEEEC
Q 021648 238 P---EGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 238 p---~g~~l~s~s~Dg~i~vwd~ 257 (309)
| +|++|..+-..|.|.-|++
T Consensus 408 pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 408 PLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ecccCCcEEEEEeccCceEeeee
Confidence 6 6777777777777777666
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=1.3e-11 Score=115.39 Aligned_cols=197 Identities=16% Similarity=0.256 Sum_probs=143.0
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecccc----ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
-|..-.+.-+...++.+..++.+-|||...+.....+..... ....+.+++..-++++++. -+.+.+|.....
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~~~d 165 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKPHED 165 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEecccc
Confidence 344444555667889999999999999987666655544322 1222334444445555543 568999998743
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 168 (309)
+.-..+.||.+.|..+.++.||++++|.|.|+++|+|++++.+... +++++...|+|
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------~~~fgHsaRvw---- 222 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------CTGFGHSARVW---- 222 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------cccccccceeE----
Confidence 3333689999999999999999999999999999999998765321 12333344444
Q ss_pred CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC
Q 021648 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 248 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~ 248 (309)
.++|.|+ .+++.+.|-+.++|+. .++.+..+..+ ....++.++..++...++|++.
T Consensus 223 -------------------~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h--~g~~iw~~~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 223 -------------------ACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEH--SGKGIWKIAVPIGVIIKVTGGN 278 (967)
T ss_pred -------------------EEEeccc--eeEEeccceEEEEEec-ccceehhhhhh--hhcceeEEEEcCCceEEEeecc
Confidence 4678887 8899999999999965 35555555432 2356789999999999999999
Q ss_pred CCcEEEEECCC
Q 021648 249 DGSVYAWSVRS 259 (309)
Q Consensus 249 Dg~i~vwd~~~ 259 (309)
|+.+++|++..
T Consensus 279 Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 279 DSTLKLWDLNG 289 (967)
T ss_pred Ccchhhhhhhc
Confidence 99999999854
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=7.9e-10 Score=100.74 Aligned_cols=205 Identities=11% Similarity=0.106 Sum_probs=122.4
Q ss_pred cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648 34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 113 (309)
Q Consensus 34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 113 (309)
.+.++|.+... .+.+..+...+....|+|+++.+++.+.......|.++|+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 55666765433 34444455567788999999999887643324578899998876432 22223334567899999977
Q ss_pred E-EecCCCc--EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEE
Q 021648 114 I-SGSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 190 (309)
Q Consensus 114 ~-s~s~Dg~--v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 190 (309)
+ +.+.++. |.++|+++++.... ..+.......+
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~l--------------------------------------------t~~~~~~~~p~ 312 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRI--------------------------------------------TRHRAIDTEPS 312 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEEC--------------------------------------------ccCCCCccceE
Confidence 6 4455664 44555544321100 00011123457
Q ss_pred EccCCCEEEEEeC-CC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-C--cEEEEECCCCceEE
Q 021648 191 FSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVYAWSVRSGKEVA 264 (309)
Q Consensus 191 ~s~dg~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-g--~i~vwd~~~~~~~~ 264 (309)
|||||+.++..+. ++ .|+++|+.+++... .... .......+|+|||++|+..+.+ + .|.++|+.+++..
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~---g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~- 387 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE---GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ- 387 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC---CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-
Confidence 9999998876654 33 57777877666433 2111 1122346899999999887654 3 4566788776542
Q ss_pred EeecCCCCCcEEEECCCeeEEEEccc
Q 021648 265 SWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 265 ~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
.+... .......|+||++.++..+.
T Consensus 388 ~lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 388 VLTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EccCC-CCCCCceECCCCCEEEEEEe
Confidence 22221 12234579999987766543
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.6e-12 Score=112.90 Aligned_cols=208 Identities=14% Similarity=0.289 Sum_probs=140.8
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
..|.||+..|..+.--.+.+-++++|.|+||++|.+.. .+ |+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~---------------------Eg-----------D~------ 770 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKP---------------------EG-----------DE------ 770 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEecc---------------------cc-----------Cc------
Confidence 34667888777777666666777888888888887642 00 00
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEE
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF 164 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (309)
+.+..+..+++.|+.+|.++.|..+.+.++++ ||-+.+||.--+++.... .|
T Consensus 771 ~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~--------------------------~d 822 (1034)
T KOG4190|consen 771 IGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM--------------------------ED 822 (1034)
T ss_pred cccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh--------------------------hc
Confidence 11234567888999999999999999888876 999999996444332110 00
Q ss_pred ECCCCCcCCceEEEeCCCCCCCeEEE-E-ccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeec--CCCCCccceEEECCC
Q 021648 165 DARKYEKGPFDIFSVGGDISDANVVK-F-SNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPE 239 (309)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~v~-~-s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~sp~ 239 (309)
+.+. ..+..+. . +-+...+.++ +...+|+++|.+.++...++... +.....+.+++..|.
T Consensus 823 apk~---------------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 823 APKE---------------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred Cccc---------------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 0000 0000111 1 1133444444 67889999999998887777654 444445667899999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEE
Q 021648 240 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 294 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~ 294 (309)
|+++|++-..|+|-+.|.++|+.+..+....+....++ .|..+.++....|..+
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl 941 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL 941 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee
Confidence 99999999999999999999998888877766666666 5666666666555333
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=109.42 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=139.7
Q ss_pred CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce----eE--EECCCCcEEEEE-ECCEEEEEECCCCCcC
Q 021648 100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP----AA--AYDDQGLVFAVA-FGGYIRMFDARKYEKG 172 (309)
Q Consensus 100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~-~~~~i~~~d~~~~~~~ 172 (309)
.|....+.-..+.++.+..+..+.+||...+.....+....+. .. ..+....+++++ .-+.|.+|+.. ..++
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDNK 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccCC
Confidence 3444555566778888888999999998766544333222221 11 223344444444 46899999976 2322
Q ss_pred CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE
Q 021648 173 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 252 (309)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i 252 (309)
+. .+.+|...+..+.+|.||+++++.++|..+++|++.+.+...... -.|..++++++|.|+ .++|+++|-++
T Consensus 168 p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~--fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 168 PI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG--FGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred cc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc--ccccceeEEEEeccc--eeEEeccceEE
Confidence 22 456788889999999999999999999999999999887765211 246788999999998 99999999999
Q ss_pred EEEECCCCceEEEeecCC-CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 253 YAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 253 ~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
++|+. .++.+..+..|. ..+..++..++..+.+|++.|..+-.|++
T Consensus 241 rvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 241 RVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 99977 455566777775 46888999999999999999855555544
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=1.1e-08 Score=90.30 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=154.9
Q ss_pred ceEEEEeCCCCCEEEEeeC----CCcEEEEEcCCC--ce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 13 RISSMDFHKSSSYLVTASD----DESIRLYDVTAA--TC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~----D~~v~iWd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
..+-++++|++++|-++.. ++.|..|++... +. +............+++.+++++++.+.- .++.+.+++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany--~~g~v~v~~ 115 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY--GGGSVSVFP 115 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET--TTTEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc--cCCeEEEEE
Confidence 3456788999998877766 579999987643 32 2333322233456889999998888742 378999999
Q ss_pred ccC-CceEEE--eee-----------cccCEEEEEecCCCCeEEEec-CCCcEEEeeCCCce--eee--eeeecC--c-e
Q 021648 85 LHD-NKYLRY--FKG-----------HHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEK--CQG--LLRVQG--R-P 142 (309)
Q Consensus 85 ~~~-~~~~~~--~~~-----------h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~~~~--~~~--~~~~~~--~-~ 142 (309)
+.. +..... ... -.....++.++|++++++... ....|.++++.... ... .+..+. . .
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 976 432222 111 124578899999999776652 33478888876554 322 122211 1 2
Q ss_pred eEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceE-EEeC-----CC-CCCCeEEEEccCCCEEEEE-eCCCcEEEEEC
Q 021648 143 AAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDI-FSVG-----GD-ISDANVVKFSNDGRLMLLT-TMEGHIHVLDS 212 (309)
Q Consensus 143 ~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~-~~~~-----~~-~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~ 212 (309)
-..+++++.++.+.. ++.|.++++.... +.+.. ..+. .. ......+++||||++|.++ -..+.|.+|++
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 356777777666654 6889999876211 11111 1111 01 1145778999999986654 46789999998
Q ss_pred C--CCeEeEEeeecCCCCCccceEEECCCCCEEEEEc-CCCcEEEEEC--CCCceEEEee-cCCCCCcEEEE
Q 021648 213 F--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKEVASWM-SFDTEPPVIKW 278 (309)
Q Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i~vwd~--~~~~~~~~~~-~~~~~v~~l~~ 278 (309)
. ++.+...-.. +........++++|+|++|+++. .++.|.+|++ .+|+....-. .--..+.||.|
T Consensus 275 d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 3443322111 12223456799999999999885 5668999977 4555433221 11234566665
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.4e-10 Score=99.64 Aligned_cols=189 Identities=17% Similarity=0.263 Sum_probs=138.2
Q ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc---cceeEEEEe-------------------cCCC-EEEEEcCCCC
Q 021648 20 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFT-------------------SHPT-TVIYSSKNGW 76 (309)
Q Consensus 20 s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~---~~v~~~~~~-------------------~~~~-~~~~~s~~g~ 76 (309)
.|...++|....||.+||||...++..+.+..-. ....+..|. ..++ -++.+- .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt---~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT---P 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec---C
Confidence 4556899999999999999999887766553221 112222221 1111 222222 2
Q ss_pred CceeEEEEccCCceEEEee--ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEE
Q 021648 77 DESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 154 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (309)
.+.|-+|++..++....+. +|.+.|+++.++.+-.+|-|++.|+.+.+|+....+.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~---------------------- 136 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI---------------------- 136 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----------------------
Confidence 5789999999998777765 6999999999998888999999999999999765432
Q ss_pred EEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 155 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 155 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
+++|... ...+.+++++|||..+++++ +.|.+||+.+++.+.+|.. |.+++..+
T Consensus 137 ------~~~~~~~---------------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg---h~s~v~t~ 190 (541)
T KOG4547|consen 137 ------IRIWKEQ---------------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG---HGSPVRTL 190 (541)
T ss_pred ------eeeeccC---------------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC---CCcceEEE
Confidence 3444322 13467889999999988775 7899999999999998874 56778888
Q ss_pred EECCC-----CCEEEEE-cCCCcEEEEECCC
Q 021648 235 SFSPE-----GMFVISG-SGDGSVYAWSVRS 259 (309)
Q Consensus 235 ~~sp~-----g~~l~s~-s~Dg~i~vwd~~~ 259 (309)
+|.-+ |.++++. ..+..+.+|-+..
T Consensus 191 ~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 191 SFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEeccccccceeeeccccccceeEEEEEc
Confidence 88766 6666665 6677889998865
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.1e-09 Score=97.28 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=121.2
Q ss_pred cEEEEEcCCCceeeeeeccccceeEEEEecCCCE--EEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC
Q 021648 34 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD 111 (309)
Q Consensus 34 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~ 111 (309)
.|-+.|.+.+.. +.+.........=.|+||++. +++.+.......|.+.++.+++..+ +....+......|+|||+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 455556654443 333333333455689999986 3334433224678888998876433 333445556789999998
Q ss_pred eEEEecC-CC----cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCC
Q 021648 112 CFISGSL-DR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 186 (309)
Q Consensus 112 ~l~s~s~-Dg----~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 186 (309)
.|+-.+. +| .+..|++..+.. +...++. .......
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~-------------------------g~~~~lt---------------~~~~~~~ 283 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI-------------------------GKPRRLL---------------NEAFGTQ 283 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC-------------------------CcceEee---------------cCCCCCc
Confidence 8775542 22 122233221100 0000000 0011112
Q ss_pred eEEEEccCCCEEEEEeC-CCcEEEE--ECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCC
Q 021648 187 NVVKFSNDGRLMLLTTM-EGHIHVL--DSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS 259 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~~-dg~v~i~--d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~ 259 (309)
...++||||+.|+..+. +|...+| +... +.....+.. ....+....|||||++|+..+.+ ..|++||+.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 34689999998887653 5654444 4432 221222211 12344567899999999877554 3699999988
Q ss_pred CceEEEeecCCCCCcEEEECCCeeEEEEccc---eEEEeeecC
Q 021648 260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDL 299 (309)
Q Consensus 260 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~---d~~~~~~~~ 299 (309)
++.. .+......+....|+||++.|+.... ...+|.+++
T Consensus 361 g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 361 GRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 7653 33333345677999999987764322 244554443
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=2.8e-10 Score=94.80 Aligned_cols=248 Identities=13% Similarity=0.215 Sum_probs=163.1
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE-cCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCce
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD-VTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
++++.++||.+.|++...-|...-+.+.+.|.++|||- .+.++--..+.. -+.+++...+.+....++.+-. .++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---NGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---cce
Confidence 56778899999999999999888899999999999993 233432222221 1334666666666656666544 345
Q ss_pred eEEEEc----cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEE
Q 021648 80 LRLLSL----HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 155 (309)
Q Consensus 80 i~~~d~----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (309)
+.-+.+ +.....+....|..+|..+-|+....++++.+.|+.+..-=.+.+....-..+.... .+....+..
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----t~~~~d~~~ 167 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA----SALQFDALY 167 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC----CCCceeeEE
Confidence 555543 444566777889999999999988899999999988754334444322111111000 011111112
Q ss_pred EE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCcc
Q 021648 156 AF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 231 (309)
Q Consensus 156 ~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 231 (309)
++ .+.|.+..+.. ...-.+....++...+.+.+..|....+.++..|..|.+||+--.+-+ .++.. .+...+
T Consensus 168 ~fvGd~~gqvt~lr~~~--~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~-gh~~kV 243 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQ--NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQ-GHNDKV 243 (404)
T ss_pred EEecccccceEEEEEee--cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeec-cchhhh
Confidence 22 24443333221 112235567788889999999999999999999999999997533222 12221 244566
Q ss_pred ceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648 232 LEASFSPEGMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
..+..-+--+.+.+++.||.|-+|++...
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 67777788899999999999999998643
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=2.6e-08 Score=99.15 Aligned_cols=250 Identities=13% Similarity=0.198 Sum_probs=154.9
Q ss_pred EEEeCCC-CCEEEEeeCCCcEEEEEcCCCceeeeeec-cc-------------cceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 16 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINS-KK-------------YGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 16 ~i~~s~~-~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
.++++++ ++++++-+..+.|++||.. +..+..+.. .. .....+++.++++.++++.. ..+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt--~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT--ENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC--CCceE
Confidence 5788874 6678888889999999975 444443332 11 12456788887776666532 35789
Q ss_pred EEEEccCCceEEEeeec-----------------ccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCceeeeeeeecCce
Q 021648 81 RLLSLHDNKYLRYFKGH-----------------HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 142 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~~h-----------------~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~ 142 (309)
+.+|+.++. +.++.+- ....+.++++| +++.+++.+.++.|++||..++... .+.
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~----- 721 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS----- 721 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe-----
Confidence 999987764 4443220 12346789998 5667788888899999997665321 110
Q ss_pred eEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC-EEEEEeCCCcEEEEECCCCeEeEEe
Q 021648 143 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTY 221 (309)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~dg~v~i~d~~~~~~~~~~ 221 (309)
. ++.....+ +.. ...........++++|+|. ++++...++.|++||+.++......
T Consensus 722 -----G---------~G~~~~~~------g~~---~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 722 -----G---------DGYERNLN------GSS---GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred -----c---------CCccccCC------CCc---cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 0 11000000 000 0000112346789999997 6667777899999998876532111
Q ss_pred eecC------------------CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC--------------
Q 021648 222 NVKP------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-------------- 269 (309)
Q Consensus 222 ~~~~------------------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-------------- 269 (309)
...+ ..-.....++++|+|+.+++-+.++.|++||..++... ++.+.
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccc
Confidence 0000 00112357899999999999999999999999876543 32221
Q ss_pred CCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 270 DTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 270 ~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
-..+..++++|+|+++++-+.+..+..+++
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 124677999999998888776644444443
No 253
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=7.2e-10 Score=105.68 Aligned_cols=227 Identities=15% Similarity=0.214 Sum_probs=150.6
Q ss_pred EEcCCCceeeeeeccccceeEEEEecCC-CEEEEEcCCCCCceeEEEEccC-----CceE--EEeeecccCEEEEEecCC
Q 021648 38 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHD-----NKYL--RYFKGHHDRVVSLSLCSS 109 (309)
Q Consensus 38 Wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~s~~g~d~~i~~~d~~~-----~~~~--~~~~~h~~~v~~v~~~~~ 109 (309)
|.. .|..+..+..|...+..++.++.. ..+++++. |++||+||... +... .++.--..++..+.+++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecC---CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 554 477778888887777777777655 67787765 89999999743 1122 223333568999999999
Q ss_pred CCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEE
Q 021648 110 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 189 (309)
Q Consensus 110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v 189 (309)
+..+|.++.||.|++.++.-......... .+++-|..+ .+. +.. .-
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~---------------------~~ri~n~~~--~g~--vv~---------m~ 1155 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVAT---------------------QVRIPNLKK--DGV--VVS---------MH 1155 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceee---------------------eeecccccC--CCc--eEE---------ee
Confidence 99999999999999987653211100000 011111100 000 000 11
Q ss_pred EEc-cCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648 190 KFS-NDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 190 ~~s-~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
+|. .++ ..++.+...+.|..||.++....-+.+... ..+.+.+++.+|-+.++++|..-|.+-+||++=+.++..+.
T Consensus 1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred cccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 111 123 378888889999999998766555444333 34778899999999999999999999999999888888763
Q ss_pred -cCCCCCcEEEECCCe---eEEEEccc----eEEEeeecCCCccc
Q 021648 268 -SFDTEPPVIKWTPGS---LMFVTGSS----ELSFWIPDLSKLGA 304 (309)
Q Consensus 268 -~~~~~v~~l~~~p~~---~~l~s~~~----d~~~~~~~~~~~~~ 304 (309)
.+..++..+..+|-. ...+++++ .+.+|..+.+ .++
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~ 1278 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQ 1278 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cce
Confidence 344788888887743 35555554 4888877664 443
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.3e-09 Score=92.20 Aligned_cols=233 Identities=13% Similarity=0.179 Sum_probs=153.5
Q ss_pred ceeEEEEecCCCE-EEEEcCCCCCceeEEEEccCCceEEE------eeecccCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648 55 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRY------FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 127 (309)
Q Consensus 55 ~v~~~~~~~~~~~-~~~~s~~g~d~~i~~~d~~~~~~~~~------~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~ 127 (309)
.+..++|..+++. ++.+.. .|..+..++++....... ...-.++|..+... +.+|++|-.+|.+.+|..
T Consensus 57 ris~l~~~~d~~tevl~~r~--~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARS--ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhheeecCCceeEeeccc--cCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4566677666553 333221 155666666665544332 33445566666543 347899999999999988
Q ss_pred CCcee----eeeeee-cCceeEEECC-CCcEEE-EEEC--CEEEEEECCCCCcCCceEEEeCCCC---------CCCeEE
Q 021648 128 RAEKC----QGLLRV-QGRPAAAYDD-QGLVFA-VAFG--GYIRMFDARKYEKGPFDIFSVGGDI---------SDANVV 189 (309)
Q Consensus 128 ~~~~~----~~~~~~-~~~~~~~~~~-~~~~~~-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~~v 189 (309)
+.+.. ...+.. .+...+-..+ ...+++ ++.. +.+++||+...+ +++....-. -.+..+
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~----qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK----QIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce----eeeeccCCCCccccceeeeeeccc
Confidence 74331 111111 1111111122 233444 4445 689999986532 223222111 123556
Q ss_pred EEccC--CCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-
Q 021648 190 KFSND--GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS- 265 (309)
Q Consensus 190 ~~s~d--g~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~- 265 (309)
.|-+. ...|++++--++|++||.+.+. ++..+. ...+++..+...|+|++|++|-.-|.+..||++.++....
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 78777 8899999999999999987543 333333 2456788899999999999999999999999999988776
Q ss_pred eecCCCCCcEEEECCCeeEEEEccceEEEeeec
Q 021648 266 WMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPD 298 (309)
Q Consensus 266 ~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~ 298 (309)
+.+..+.+.+|--+|+.+++++++-|.++.+-|
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 888999999999999999999999995444433
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=9.1e-10 Score=97.67 Aligned_cols=183 Identities=11% Similarity=0.190 Sum_probs=131.1
Q ss_pred CCCeEEEecCCCcEEEeeCCCceeeeeeeec----Cce-----e--EEE--------------CCCCcEEE-EEECCEEE
Q 021648 109 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRP-----A--AAY--------------DDQGLVFA-VAFGGYIR 162 (309)
Q Consensus 109 ~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~~~-----~--~~~--------------~~~~~~~~-~~~~~~i~ 162 (309)
...+||....||.+|+||...++....+... +.. . +.+ ..+...++ +...|.|-
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 4568999999999999998877654433211 000 0 001 11122333 33568888
Q ss_pred EEECCCCCcCCceE-EEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCC
Q 021648 163 MFDARKYEKGPFDI-FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 241 (309)
Q Consensus 163 ~~d~~~~~~~~~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 241 (309)
+|++-..+ +.- +.-..|...++++..+.+-..|-+++.|+++-.|+...+..+..+.. ....+..++.+|||+
T Consensus 84 ~ys~~~g~---it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 84 LYSVAGGE---ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGK 157 (541)
T ss_pred EEEecCCe---EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCC
Confidence 88875432 222 23345667888888888889999999999999999988887776653 334567899999999
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCC-----eeEEEE-cc--ceEEEeeecC
Q 021648 242 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVT-GS--SELSFWIPDL 299 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-----~~~l~s-~~--~d~~~~~~~~ 299 (309)
.+++|| +.|++||+++++.+.+|++|.++|.+++|.-+ |.++.+ +. .++.+|..+-
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999997 56999999999999999999999999999776 555544 33 2477787654
No 256
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=1.4e-08 Score=84.53 Aligned_cols=273 Identities=13% Similarity=0.201 Sum_probs=177.6
Q ss_pred ceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648 13 RISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 91 (309)
Q Consensus 13 ~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~ 91 (309)
.|.-|.|..|.-+ |.....|+.|.+|++...+=...+...+.+...++++|+|..++..+. .|-.|.+|.+.+.+..
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse--F~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE--FDLRITVWSLNTQKGY 127 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec--ceeEEEEEEeccceeE
Confidence 4666788887765 556667899999999887777788888888999999999987776653 4789999999886643
Q ss_pred EEeeecccCEEEEEecCCCCeEEEecCC------------------------------------CcEEEeeCCCceeeee
Q 021648 92 RYFKGHHDRVVSLSLCSSKDCFISGSLD------------------------------------RTVLLWDQRAEKCQGL 135 (309)
Q Consensus 92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~D------------------------------------g~v~~Wd~~~~~~~~~ 135 (309)
. ++--+..+..++|+|||++.+-++.. ..+.+||.--.-.+-.
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2 22223456889999999877666531 1222333100000000
Q ss_pred e-eecCceeEEECCCCcEEEEE-ECCEEEEEECC------------CCC-------------------------cC----
Q 021648 136 L-RVQGRPAAAYDDQGLVFAVA-FGGYIRMFDAR------------KYE-------------------------KG---- 172 (309)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~------------~~~-------------------------~~---- 172 (309)
. ..-+.....++|.+.+++++ +|+.+|+.+-- ... ..
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 0 00122345677878888876 57777665410 000 00
Q ss_pred --------Cc-------eEEEeC------CCCCCCeEEEEccCCCEEEEEeCC--CcEEEEECCCCeEeEEeeecCCCCC
Q 021648 173 --------PF-------DIFSVG------GDISDANVVKFSNDGRLMLLTTME--GHIHVLDSFRGTLLSTYNVKPVSRN 229 (309)
Q Consensus 173 --------~~-------~~~~~~------~~~~~~~~v~~s~dg~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~ 229 (309)
++ .+..+. .....+.-++||+|..++++..+. ..+-+||++..++-..+. ...
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hcc
Confidence 00 000111 012345668999999999987654 578899987755443322 234
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEE
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 293 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~ 293 (309)
++....|.|.-..++.+.....++.|...-...+.. +.-.-.|..++|+-+|..++-.++|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 677788999988888887777899999976554443 233346889999999999999888833
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=2.6e-07 Score=78.04 Aligned_cols=267 Identities=13% Similarity=0.183 Sum_probs=168.1
Q ss_pred CCCcceEEEEeCCCCCEEEEeeC---CCcEEEEEcCC--Cceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 9 DYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTA--ATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~---D~~v~iWd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
.+.+..+-++|+|+++.|-++-. ++.|..|.++. |+.... ......+...+++++++.+++++.= .-+.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY--~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY--HSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc--cCceEE
Confidence 45677888999999988877765 47888887763 443221 1111123367899999988887753 257899
Q ss_pred EEEccC-CceE--EEeeecccC----------EEEEEecCCCCeEEEec--CCCcEEEeeCCCceeeeeeeec-----Cc
Q 021648 82 LLSLHD-NKYL--RYFKGHHDR----------VVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQ-----GR 141 (309)
Q Consensus 82 ~~d~~~-~~~~--~~~~~h~~~----------v~~v~~~~~~~~l~s~s--~Dg~v~~Wd~~~~~~~~~~~~~-----~~ 141 (309)
++-+.. |... ..+..|.+. +....+.|++++|++.. .| .|.++++..++........ +-
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCc
Confidence 998855 4322 123346655 88899999999988874 45 5678888876654322211 11
Q ss_pred eeEEECCCCcEEEEEE--CCEEEEEECCCCCcCCceEE-EeC------CCCCCCeEEEEccCCCEEEEEeC-CCcEEEEE
Q 021648 142 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVG------GDISDANVVKFSNDGRLMLLTTM-EGHIHVLD 211 (309)
Q Consensus 142 ~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~-~~~------~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d 211 (309)
--+++.|.+++..+.. +++|.+|+.... .+.+... .+. ........+.++|||++|-+..- ...|.+|-
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 2367888888777664 699999987653 1222211 110 01245678899999999866532 33566665
Q ss_pred CCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCC--CceEEEee-cCCCCCcEEEEC
Q 021648 212 SFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRS--GKEVASWM-SFDTEPPVIKWT 279 (309)
Q Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~--~~~~~~~~-~~~~~v~~l~~~ 279 (309)
+.. +..+......+.+........|+|+|++|+++..|+ .|.+|.+.. |+.-.... .....+.||.|.
T Consensus 273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 432 233443343444444456789999999999998875 788888754 43322222 234456777775
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=1e-07 Score=85.25 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=138.5
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 102 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~ 102 (309)
+..+..++.|+.+..+|..+|+.+............... .+..++.... ++.+..+|.++|+.+..+........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCcee
Confidence 456667777888888888888776554432211100111 2344555442 77899999999998777654332211
Q ss_pred EEE-ecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648 103 SLS-LCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFAVAFGGYIRMFDA 166 (309)
Q Consensus 103 ~v~-~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~d~ 166 (309)
... -+| .+..++.+..++.+..+|.++++.......... ..... ..+.++....++.+..+|.
T Consensus 180 ~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 180 LRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred ecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEEC
Confidence 000 011 124677888899999999988876543321100 00111 2456677777899999998
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
.+.+. +..... .... ....++..+..++.+|.++.+|..+|+.+-...... ........ ..+..++++
T Consensus 259 ~tG~~----~W~~~~--~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~--i~g~~l~~~ 326 (377)
T TIGR03300 259 RSGRV----LWKRDA--SSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAPA--VVGGYLVVG 326 (377)
T ss_pred CCCcE----EEeecc--CCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccCE--EECCEEEEE
Confidence 65431 222211 1111 122345667777889999999999988764432110 01111111 156799999
Q ss_pred cCCCcEEEEECCCCceEEEeecCCC
Q 021648 247 SGDGSVYAWSVRSGKEVASWMSFDT 271 (309)
Q Consensus 247 s~Dg~i~vwd~~~~~~~~~~~~~~~ 271 (309)
+.||.++++|..+++.+..+..+..
T Consensus 327 ~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 327 DFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCC
Confidence 9999999999999999888776554
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.1e-10 Score=112.82 Aligned_cols=200 Identities=17% Similarity=0.285 Sum_probs=150.3
Q ss_pred ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeec-cccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
++.|-..|.++.=+|...+-+||+.||.|++|.-..+..+..++. .+..|+.+.|+..|+.+-.+. | |+.+.+|..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d--~-dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD--G-DGDLSLWQA 2280 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec--c-CCceeeccc
Confidence 344556777888889888999999999999999888887777653 336688888988888766553 2 889999998
Q ss_pred cCCceEEEeeecccCEEEEEecCCCCeEEEec---CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEE
Q 021648 86 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 162 (309)
Q Consensus 86 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 162 (309)
. .+.....+.|........|.. ..+++++ .++.+.+||.--+. . ..++
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~--------~---------~s~v--------- 2331 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP--------M---------NSLV--------- 2331 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc--------c---------ccee---------
Confidence 7 455666778888888888876 4566664 46788888842110 0 0011
Q ss_pred EEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648 163 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 242 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~ 242 (309)
. ..|...++++++-|..+.+++|+-+|.|++||++..++++++.. +. .-.+
T Consensus 2332 --------------~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~ 2382 (2439)
T KOG1064|consen 2332 --------------H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREY 2382 (2439)
T ss_pred --------------e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh-hhhe
Confidence 0 22445678999999999999999999999999988877765531 33 4578
Q ss_pred EEEEcCCCcEEEEECCCCceEEEee
Q 021648 243 VISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 243 l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
+++|+..|.|+||++..-..+.+++
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCc
Confidence 9999999999999998876676664
No 260
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=5.3e-08 Score=87.75 Aligned_cols=194 Identities=7% Similarity=0.005 Sum_probs=116.9
Q ss_pred ceEEEEeCCCCCE-EEEeeCC---CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 13 RISSMDFHKSSSY-LVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 13 ~V~~i~~s~~~~~-l~t~s~D---~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.+..-.|+|||+. ++-.+.+ ..|-++|+.+++...... .........|+|+++.++.......+..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678999999984 6655554 357777988876654433 2233445679999998877654444678889998887
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecC-CC--cEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEE
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 165 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 165 (309)
+.. .+..+........|+|||+.|+=.+. .+ .|.+.|+.+++.. +
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----------------------------r--- 315 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----------------------------Q--- 315 (419)
T ss_pred cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE----------------------------e---
Confidence 643 34444443345579999986655442 22 2223333222110 0
Q ss_pred CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---------CcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
....+. ....+||||+.++..... ..|.+.|+.++.... +... .......|
T Consensus 316 -----------lt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~----~~~~~p~~ 375 (419)
T PRK04043 316 -----------VVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN----GVNQFPRF 375 (419)
T ss_pred -----------CccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC----CCcCCeEE
Confidence 000111 013689999988876653 268888887776432 2211 12224689
Q ss_pred CCCCCEEEEEcCCC---cEEEEECCC
Q 021648 237 SPEGMFVISGSGDG---SVYAWSVRS 259 (309)
Q Consensus 237 sp~g~~l~s~s~Dg---~i~vwd~~~ 259 (309)
+|||++|+-.+.++ .+.+.++..
T Consensus 376 SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 376 SSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCCEEEEEEccCCcEEEEEEecCC
Confidence 99999887765543 466667743
No 261
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=6.3e-10 Score=96.61 Aligned_cols=248 Identities=16% Similarity=0.188 Sum_probs=170.3
Q ss_pred cCCCcceEEEEeCCC--CCEEEEeeCCCcEEEEEcC-CCcee--eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 8 RDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVT-AATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~--~~~l~t~s~D~~v~iWd~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
.||...|...+|.|. .+-+++++.||.||+=.+. ++.+. ..+..|..+|..++.-|+..+-+.++ |.|+.+.-
T Consensus 182 SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~ 259 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFH 259 (559)
T ss_pred cccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceee
Confidence 579999999999884 4679999999999998765 45443 44667888899999988776555443 44889999
Q ss_pred EEccCCceEEEe---eeccc---CEEEEEecCC-CCeEEEecCCCcEEEeeCCCceee------eee-----ee---cCc
Q 021648 83 LSLHDNKYLRYF---KGHHD---RVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQ------GLL-----RV---QGR 141 (309)
Q Consensus 83 ~d~~~~~~~~~~---~~h~~---~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~~------~~~-----~~---~~~ 141 (309)
+|+..+.+...+ ..+.. ...+++..|- .+.|++++.|.-++++|.+.-... ..+ .. ...
T Consensus 260 ~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~I 339 (559)
T KOG1334|consen 260 IDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNI 339 (559)
T ss_pred eeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccc
Confidence 998776543222 23333 4567777874 458999999999999997643221 111 00 123
Q ss_pred eeEEEC-CCCcEEEEEECCEEEEEECCCCCcC----------CceEEEeCCCCC--CCeEEE-EccCCCEEEEEeCCCcE
Q 021648 142 PAAAYD-DQGLVFAVAFGGYIRMFDARKYEKG----------PFDIFSVGGDIS--DANVVK-FSNDGRLMLLTTMEGHI 207 (309)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~~--~~~~v~-~s~dg~~l~~~~~dg~v 207 (309)
+.+.|+ ..+.+++.-.|-.|++|.- .+..+ ++...-..||.+ .|..+- |-|..+++++|+.-|+|
T Consensus 340 Tgl~Ysh~~sElLaSYnDe~IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI 418 (559)
T KOG1334|consen 340 TGLVYSHDGSELLASYNDEDIYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI 418 (559)
T ss_pred eeEEecCCccceeeeecccceEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence 456777 4556777777888999942 22222 111111334443 233333 57888999999999999
Q ss_pred EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648 208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
-||+-.+++.+...+. -...|.++.=+|---.||+.|-|..|+||.-.+.+
T Consensus 419 FiW~K~t~eii~~Meg---Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 419 FIWDKKTGEIIRFMEG---DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EEEecchhHHHHHhhc---ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 9999888887765442 22345566677888899999999999999985543
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-08 Score=85.15 Aligned_cols=239 Identities=16% Similarity=0.242 Sum_probs=151.6
Q ss_pred ceeEEEEecCCCEEEEEcCCCCCceeEEEEccC-C--c--eEEEeeecc------------cCEEEEEecCCCC--eEEE
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-N--K--YLRYFKGHH------------DRVVSLSLCSSKD--CFIS 115 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~-~--~--~~~~~~~h~------------~~v~~v~~~~~~~--~l~s 115 (309)
-+..+.|...|++++++.. +|.|-++.-+. . + ....++.|. ..|..+.|+++++ .|+.
T Consensus 27 iis~vef~~~Ge~LatGdk---gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDK---GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred ceeeEEeecccceEeecCC---CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3677888899999998865 45677775322 1 1 223344443 3578889998765 6777
Q ss_pred ecCCCcEEEeeCCCceeee---------------eeeecC-----------------------ceeEEECCCCcEEEEEE
Q 021648 116 GSLDRTVLLWDQRAEKCQG---------------LLRVQG-----------------------RPAAAYDDQGLVFAVAF 157 (309)
Q Consensus 116 ~s~Dg~v~~Wd~~~~~~~~---------------~~~~~~-----------------------~~~~~~~~~~~~~~~~~ 157 (309)
...|++|++|-++...... .++++. .++.....+...+..+.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 7889999999864322110 011100 01223334555666677
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCC-----CCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeE-------Eeeec
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-------TYNVK 224 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~-------~~~~~ 224 (309)
|-.|.+|.+.... +.+.+..+.++. .-+++..|+|.. ..++..+..|+|++-|++...+-. ..+.+
T Consensus 184 dLRINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7899999976533 345555554432 124566788865 677888899999999987432111 11110
Q ss_pred ------CCCCCccceEEECCCCCEEEEEcCCCcEEEEEC-CCCceEEEeecCC------------CCC---cEEEECCCe
Q 021648 225 ------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-RSGKEVASWMSFD------------TEP---PVIKWTPGS 282 (309)
Q Consensus 225 ------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~-~~~~~~~~~~~~~------------~~v---~~l~~~p~~ 282 (309)
..-...|..+.|+++|+|+++-.. -++++||+ -..+++.+.+.|. ..| ..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 011235678999999999998765 47999999 4566787776663 222 238899999
Q ss_pred eEEEEccceEEEeeec
Q 021648 283 LMFVTGSSELSFWIPD 298 (309)
Q Consensus 283 ~~l~s~~~d~~~~~~~ 298 (309)
..+.||+.--.+.+-+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999764444433
No 263
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.12 E-value=1.7e-10 Score=67.37 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=36.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 39 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd 39 (309)
|+.++|++|+++|++++|+|++++|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999999999999999999999999999997
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=8e-10 Score=100.44 Aligned_cols=277 Identities=19% Similarity=0.306 Sum_probs=176.8
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCC-Cceeeeeec-cccceeEEEEecCCCE---EEEEcCCCCCceeEEEEc
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINS-KKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~---~~~~s~~g~d~~i~~~d~ 85 (309)
++.+.++.++|-|+-+|+++.-|-+ +-|++. +...+-+.. ..-.|..+.+++++.. ++..+ ...-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts----~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS----NQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC----cchhhhhhh
Confidence 5678899999999999999876654 446653 333333322 1223566777777653 33333 345668887
Q ss_pred cCC---ceEEEeeecccCEEEEEecCCC-CeEEEecCCCcEEEeeCCCceeeeeee---ecCceeEEEC-CCCcEEEEEE
Q 021648 86 HDN---KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYD-DQGLVFAVAF 157 (309)
Q Consensus 86 ~~~---~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~ 157 (309)
... ..-..+.||...|+.+-|+|+. ..+++++-|-.+..||+++.+.-.... ....+.+... .++.+++...
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc
Confidence 532 2334567999999999999874 479999999999999998765321110 1122233333 2456777788
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
++.|++||+|.... ....+.++.+.++.+.|..- -..+.+.++||+|+.||..+....-.... ....+++.-.|
T Consensus 179 g~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~ 253 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRY 253 (1081)
T ss_pred CCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceeccc
Confidence 89999999987543 35566667777777777553 34567888999999999876543322221 12245666677
Q ss_pred CCCCC--EEEEEcCCCcE---------EEEECCC-CceEEEeecCCCCCcEEEECCCe----------eEEEEccce--E
Q 021648 237 SPEGM--FVISGSGDGSV---------YAWSVRS-GKEVASWMSFDTEPPVIKWTPGS----------LMFVTGSSE--L 292 (309)
Q Consensus 237 sp~g~--~l~s~s~Dg~i---------~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~----------~~l~s~~~d--~ 292 (309)
-|=|. ++.---.+..+ ..|++.+ .+++.+|.+|+..|....|...+ -+|++=+.| +
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 77432 22211111122 3344443 35688999999988887775533 389999988 5
Q ss_pred EEeee
Q 021648 293 SFWIP 297 (309)
Q Consensus 293 ~~~~~ 297 (309)
++|-.
T Consensus 334 rlWpI 338 (1081)
T KOG0309|consen 334 RLWPI 338 (1081)
T ss_pred Eeeec
Confidence 55533
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=2.6e-07 Score=81.10 Aligned_cols=275 Identities=14% Similarity=0.161 Sum_probs=169.6
Q ss_pred CcceEEEEeCCCCCEEEEeeC---------------CCcEEEEEcCCCceeeeeeccccc--ee-EEEEecCCCEEEEEc
Q 021648 11 NGRISSMDFHKSSSYLVTASD---------------DESIRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSS 72 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~---------------D~~v~iWd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~s 72 (309)
..-|.-+.|+|.++||.|=+. ++.+.+||..+|..+..+..-..+ .. .+-|+-+..+++-..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 345778899999999998553 345999999999998888765544 33 567777776655443
Q ss_pred CCCCCceeEEEEccCCceEEEeeec-ccCEEEEEecCCCC--eEEE-----ecCCCcEEEeeCCCceeeeeeeecCc--e
Q 021648 73 KNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKD--CFIS-----GSLDRTVLLWDQRAEKCQGLLRVQGR--P 142 (309)
Q Consensus 73 ~~g~d~~i~~~d~~~~~~~~~~~~h-~~~v~~v~~~~~~~--~l~s-----~s~Dg~v~~Wd~~~~~~~~~~~~~~~--~ 142 (309)
...+.++++..+-....++.- ...|..-.|+|-++ .|+. .+.++.+++|.+-.+..+.+..+... .
T Consensus 151 ----~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 151 ----GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred ----cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 246888887222111111111 24567777887543 3332 35678888888765554433322111 1
Q ss_pred eEEECCCCcEEEEE------------ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe--CCCcEE
Q 021648 143 AAAYDDQGLVFAVA------------FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIH 208 (309)
Q Consensus 143 ~~~~~~~~~~~~~~------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~--~dg~v~ 208 (309)
....+..+.++.+- ....+.|++++.. .+.+.. .-..+|..++++|.++.++..+ ++-.+.
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceec--cccccceeeeecccCCceeEEeccccccee
Confidence 12233333322211 0246777776532 222221 2245788999999988776654 678899
Q ss_pred EEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCCceEE-EeecCCCCCcEEEECCCeeE
Q 021648 209 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLM 284 (309)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~ 284 (309)
++|++.. +... ...+.. ..+.|||.+++++.++-| |.+-+||......+. .+.+-+ -.-+.|+||+++
T Consensus 302 ~~~lr~N-l~~~--~Pe~~r---NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF 373 (561)
T COG5354 302 VFDLRGN-LRFY--FPEQKR---NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQF 373 (561)
T ss_pred ecccccc-eEEe--cCCccc---ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceE
Confidence 9998754 4332 222222 346899999999999887 589999998766655 454433 345679999997
Q ss_pred EEEccc------e--EEEeeecCCCc
Q 021648 285 FVTGSS------E--LSFWIPDLSKL 302 (309)
Q Consensus 285 l~s~~~------d--~~~~~~~~~~~ 302 (309)
+-++.. | +++|.....++
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEecCCCcccccCcceEEEEecCchh
Confidence 755432 3 67777655543
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2e-06 Score=72.73 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=163.2
Q ss_pred CCcEEEEEcCC--Cce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccC--CceEE--EeeecccCEEE
Q 021648 32 DESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYLR--YFKGHHDRVVS 103 (309)
Q Consensus 32 D~~v~iWd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~--~~~~~--~~~~h~~~v~~ 103 (309)
+.-|.+|++++ |+. ++. -.+....+-++++++.+.++++...|-++.|-.|.+.. |+... ....-..+-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 57899998873 222 222 22334467889999998888887666677888887764 44211 11111123377
Q ss_pred EEecCCCCeEEEecC-CCcEEEeeCCC-ceeeeeeee---cC-----------ceeEEECCCCcEEEEE-E-CCEEEEEE
Q 021648 104 LSLCSSKDCFISGSL-DRTVLLWDQRA-EKCQGLLRV---QG-----------RPAAAYDDQGLVFAVA-F-GGYIRMFD 165 (309)
Q Consensus 104 v~~~~~~~~l~s~s~-Dg~v~~Wd~~~-~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~-~-~~~i~~~d 165 (309)
+++++++++|.++.. -|.|.+.-++. +.+...... .+ .-...+.|++.++.+. . -.+|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 899999999998875 46888887754 332222111 00 1123456777655554 3 37899999
Q ss_pred CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE-EeCCCcEEEEECCC--CeE--eEEeeecC---CCCCccceEEEC
Q 021648 166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR--GTL--LSTYNVKP---VSRNSTLEASFS 237 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~-~~~dg~v~i~d~~~--~~~--~~~~~~~~---~~~~~~~~~~~s 237 (309)
+......+.....+ .....-+-+.|+|+|++.-. .-.+++|-+|.... ++. +++...-+ ...+...++..+
T Consensus 174 ~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 87433323222222 22345678999999998644 55689999998765 322 22221111 112344568899
Q ss_pred CCCCEEEEEcC-CCcEEEEECCCC-ce---EEEeecCCCCCcEEEECCCeeEEEEccce---EEEeeec
Q 021648 238 PEGMFVISGSG-DGSVYAWSVRSG-KE---VASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFWIPD 298 (309)
Q Consensus 238 p~g~~l~s~s~-Dg~i~vwd~~~~-~~---~~~~~~~~~~v~~l~~~p~~~~l~s~~~d---~~~~~~~ 298 (309)
|||+||.++-. ...|-++.+... .. +...+.+...+....|+|++++|+.+..+ +.++..+
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 99999999832 237888888542 22 23334555567889999999999998865 6666443
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.8e-07 Score=83.13 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=115.8
Q ss_pred ceeEEEEecCCCE-EEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEE-EecCCC--cEEEeeCCCc
Q 021648 55 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDR--TVLLWDQRAE 130 (309)
Q Consensus 55 ~v~~~~~~~~~~~-~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg--~v~~Wd~~~~ 130 (309)
....-.|+|+++. +++.+..+-+..|.++|+.+++..... ...+......|+|||+.++ +.+.++ .|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4567889999986 665554433578999999888755443 3555566778999998654 444343 3333344333
Q ss_pred eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC-C--cE
Q 021648 131 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HI 207 (309)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d-g--~v 207 (309)
..... + ........-.|||||+.++..+.. + .|
T Consensus 268 ~~~~L------------------------------------------T--~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 268 TLTQI------------------------------------------T--NYPGIDVNGNFVEDDKRIVFVSDRLGYPNI 303 (419)
T ss_pred cEEEc------------------------------------------c--cCCCccCccEECCCCCEEEEEECCCCCceE
Confidence 21100 0 000001123699999887776543 2 68
Q ss_pred EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---------CcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648 208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVYAWSVRSGKEVASWMSFDTEPPVIKW 278 (309)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 278 (309)
++.|+.+++...... .. . ....|||||++|+-.+.. ..|.+.|+.+++. ..+... .......|
T Consensus 304 y~~dl~~g~~~rlt~-~g---~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~ 375 (419)
T PRK04043 304 FMKKLNSGSVEQVVF-HG---K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRF 375 (419)
T ss_pred EEEECCCCCeEeCcc-CC---C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEE
Confidence 888887776533211 11 1 124899999999877654 2688889887753 333332 23345889
Q ss_pred CCCeeEEEEccc---eEEEeeecCC
Q 021648 279 TPGSLMFVTGSS---ELSFWIPDLS 300 (309)
Q Consensus 279 ~p~~~~l~s~~~---d~~~~~~~~~ 300 (309)
+|||+.++-... ...++..++.
T Consensus 376 SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 376 SSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCCCEEEEEEccCCcEEEEEEecC
Confidence 999987655443 2446655543
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.06 E-value=2.7e-07 Score=82.53 Aligned_cols=225 Identities=17% Similarity=0.119 Sum_probs=136.6
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 102 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~ 102 (309)
+..+..++.++.|.-+|..+|+.+.............+ .++..++.++. ++.+..+|.++|+.++..... +.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~~ 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE---KGEVIALDAEDGKELWRAKLS-SEVL 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC---CCEEEEEECCCCcEeeeeccC-ceee
Confidence 56788888999999999999998766544332111111 24556666543 778999999999987765422 2232
Q ss_pred EEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-------eEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648 103 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 175 (309)
Q Consensus 103 ~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 175 (309)
+.... .++.++.++.|+.+..||.++++........... .... .++.++....++.+..+|.++.+.
T Consensus 139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~---- 212 (377)
T TIGR03300 139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQP---- 212 (377)
T ss_pred cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCE----
Confidence 21111 2446777778999999999988776554332211 1111 124455555668888888765431
Q ss_pred EEEe--CCCC--C---CCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 176 IFSV--GGDI--S---DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 176 ~~~~--~~~~--~---~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
.... .... . ....+.-+| .+..+..++.+|.++.||..+|+.+-..... .. .....++.+++.+
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-----~~--~~p~~~~~~vyv~ 285 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-----SY--QGPAVDDNRLYVT 285 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-----Cc--cCceEeCCEEEEE
Confidence 1110 0000 0 000000111 2456667778999999999999876544311 11 1122367788889
Q ss_pred cCCCcEEEEECCCCceEEEe
Q 021648 247 SGDGSVYAWSVRSGKEVASW 266 (309)
Q Consensus 247 s~Dg~i~vwd~~~~~~~~~~ 266 (309)
+.||.++.+|..+++.+-..
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCCCeEEEEECCCCcEEEcc
Confidence 99999999999999877554
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.5e-07 Score=83.48 Aligned_cols=254 Identities=14% Similarity=0.231 Sum_probs=152.4
Q ss_pred ceEEEEeCCCCCEEEEeeC-----------CCcEEEEEcCCCceeeeeec--cccce-eEEEEecCCCEEEEEcCCCCCc
Q 021648 13 RISSMDFHKSSSYLVTASD-----------DESIRLYDVTAATCLKTINS--KKYGV-DLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~-----------D~~v~iWd~~~~~~~~~~~~--~~~~v-~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
.|.-+.|||.-+||+|=|. -..++|||+.+|...+.+.. .++.. ...-|+.+.++++-... .
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----~ 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----N 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----c
Confidence 4678999999999999663 15899999999999888776 33333 34668888888876643 4
Q ss_pred eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee--------------eeeeeecCc--e
Q 021648 79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC--------------QGLLRVQGR--P 142 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~--------------~~~~~~~~~--~ 142 (309)
.|.+|+..+-..+..-.-.-..|....|+|.++.|| +|-.++... +.+.++... .
T Consensus 327 sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA---------Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 327 SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA---------YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eEEEEecCceeeecccccCCccccCcccCCCcceEE---------EEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 688887654221111111234677788999755444 554443321 111111111 1
Q ss_pred eEEECCCCcEEEEEECC-----------EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCC---CcEE
Q 021648 143 AAAYDDQGLVFAVAFGG-----------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIH 208 (309)
Q Consensus 143 ~~~~~~~~~~~~~~~~~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~d---g~v~ 208 (309)
.+..+.++.+++.-.|. .+.|+.++..+ -+.....+ ...+...++-|.|..++.-+.+ .++.
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCceeeec---chheeeeeeccCCCeEEEEEcccccccee
Confidence 12344566666654331 23344443221 12222222 1346677889999887765543 4677
Q ss_pred EEECCC----CeEeEEeeecCCCCCccceEEECCCCCEEEEE---cCCCcEEEEECCCC--ceEEEeecCCCCCcEEEEC
Q 021648 209 VLDSFR----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRSG--KEVASWMSFDTEPPVIKWT 279 (309)
Q Consensus 209 i~d~~~----~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~---s~Dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~~ 279 (309)
+|-..+ ..++..+. ...+..+.|+|.|++++.+ |.-|.+..+|+.-. +.+.. +.|. .-+.+.|.
T Consensus 474 fY~~e~~~~~~~lVk~~d-----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh~-~at~veWD 546 (698)
T KOG2314|consen 474 FYAVETNIKKPSLVKELD-----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEHF-AATEVEWD 546 (698)
T ss_pred EEEeecCCCchhhhhhhc-----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-cccc-ccccceEC
Confidence 776542 12222222 1234568999999999877 55789999999742 22222 2344 34779999
Q ss_pred CCeeEEEEccc
Q 021648 280 PGSLMFVTGSS 290 (309)
Q Consensus 280 p~~~~l~s~~~ 290 (309)
|.|++++++++
T Consensus 547 PtGRYvvT~ss 557 (698)
T KOG2314|consen 547 PTGRYVVTSSS 557 (698)
T ss_pred CCCCEEEEeee
Confidence 99999999886
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=2.8e-07 Score=91.91 Aligned_cols=223 Identities=14% Similarity=0.221 Sum_probs=135.9
Q ss_pred eEEEEeCCCCCEEEEe-eCCCcEEEEEcCCCceeeeeecc-----------------ccceeEEEEecCCCEEEEEcCCC
Q 021648 14 ISSMDFHKSSSYLVTA-SDDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNG 75 (309)
Q Consensus 14 V~~i~~s~~~~~l~t~-s~D~~v~iWd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~s~~g 75 (309)
-..|+++++++.|..+ ...+.|+++|..++. +.++.+. -.....+++++++..++.+..
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-- 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-- 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence 4678999988765444 445789999987654 3333210 012346888886555555432
Q ss_pred CCceeEEEEccCCceEEEeee---------------cccCEEEEEecCCCC-eEEEecCCCcEEEeeCCCceeeeeeeec
Q 021648 76 WDESLRLLSLHDNKYLRYFKG---------------HHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ 139 (309)
Q Consensus 76 ~d~~i~~~d~~~~~~~~~~~~---------------h~~~v~~v~~~~~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~ 139 (309)
.++.|++||..++... .+.+ .......++++|+++ .+++-+.++.|++||++++.... + ..
T Consensus 703 ~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~-~g 779 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-L-AG 779 (1057)
T ss_pred CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-E-Ee
Confidence 2678999998776532 2221 112456799999987 55666778999999987654211 0 00
Q ss_pred CceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE
Q 021648 140 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 219 (309)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~ 219 (309)
+... + + .... ...+.. +... .........++++++|.++++-..+++|++||..++....
T Consensus 780 g~~~--~-~-~~l~--------~fG~~d----G~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 780 GDPT--F-S-DNLF--------KFGDHD----GVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred cccc--c-C-cccc--------cccCCC----Cchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 0000 0 0 0000 000000 0000 0001123578999999999999999999999998776553
Q ss_pred Eeeec----------CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648 220 TYNVK----------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 262 (309)
Q Consensus 220 ~~~~~----------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~ 262 (309)
..... ...-.....++++|+|+.+++-+.+++|++||+.+++.
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 32210 00112456789999999999999999999999988764
No 271
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=3.2e-06 Score=70.96 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=137.2
Q ss_pred EEEeCC-CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEe-cCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648 16 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 93 (309)
Q Consensus 16 ~i~~s~-~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~ 93 (309)
++.|.+ ++.++.+--..+.|..||..+++... +.... ...+++. ++ ..++.+.. ..+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~----~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS----GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET----TCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc----CceEEEecCCCcEEEE
Confidence 578888 77788887789999999998765432 22222 4455666 45 45555542 3467779988865443
Q ss_pred eee-----cccCEEEEEecCCCCeEEEecCC--------CcEEEeeCCCceeeeeee-ecCceeEEECCCCcEEEEE--E
Q 021648 94 FKG-----HHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA--F 157 (309)
Q Consensus 94 ~~~-----h~~~v~~v~~~~~~~~l~s~s~D--------g~v~~Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~ 157 (309)
... .....+.+++.++|+..++.... |.+..++.. ++...... +..-+..++++++..+... .
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence 332 34578899999999977776543 557777776 44333222 2233456778887655444 3
Q ss_pred CCEEEEEECCCCCc--CCce-EEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceE
Q 021648 158 GGYIRMFDARKYEK--GPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 234 (309)
Q Consensus 158 ~~~i~~~d~~~~~~--~~~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
.+.|..+++..... .... ...........-.+++.++|++.++....+.|.++|.. |+++..+... ...+.++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEE
Confidence 57888888753221 0111 12222222224578999999999998899999999987 8988877754 2356789
Q ss_pred EE-CCCCCEEEEE
Q 021648 235 SF-SPEGMFVISG 246 (309)
Q Consensus 235 ~~-sp~g~~l~s~ 246 (309)
+| .|+.+.|...
T Consensus 231 ~fgg~~~~~L~vT 243 (246)
T PF08450_consen 231 AFGGPDGKTLYVT 243 (246)
T ss_dssp EEESTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 99 5776665544
No 272
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.8e-09 Score=89.58 Aligned_cols=265 Identities=16% Similarity=0.185 Sum_probs=167.1
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeC-CCcEEEEEcCCCceeeeeeccccceeEEEEecCC--CEEEEEcCCCCCc
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP--TTVIYSSKNGWDE 78 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~-D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~s~~g~d~ 78 (309)
|+++.|+.|.+.|.+++.+.++.++.|++. |..+|++|+++-..+.-+.....+-.+.++...+ ...++.+.. .++
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~-~sg 122 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF-KSG 122 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecc-cCC
Confidence 678889999999999999999999999888 9999999997543332221111111122222222 223333322 267
Q ss_pred eeEEEEccCCc-eEEEe-eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEE
Q 021648 79 SLRLLSLHDNK-YLRYF-KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 156 (309)
Q Consensus 79 ~i~~~d~~~~~-~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
.+.++|-.... +...+ +-|..+|..+.+++-+..++|....|-|..|..+.. .+.. ... ..+....
T Consensus 123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-~qfP---r~~--l~~~~K~------ 190 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-FQFP---RTN--LNFELKH------ 190 (558)
T ss_pred CcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc-ccCc---ccc--ccccccc------
Confidence 88888865433 33333 459999999999999999999988899999986531 1000 000 0000000
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee-------cCC---
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-------KPV--- 226 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~-------~~~--- 226 (309)
.-.+|.. -.......++.|||+|..+.+-+.|.+|++++..+|.++..+.= .+.
T Consensus 191 ---eTdLy~f-------------~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y 254 (558)
T KOG0882|consen 191 ---ETDLYGF-------------PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPY 254 (558)
T ss_pred ---cchhhcc-------------cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccc
Confidence 0011111 11123456889999999999999999999999988876654310 000
Q ss_pred -------------------C-CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-----------------
Q 021648 227 -------------------S-RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF----------------- 269 (309)
Q Consensus 227 -------------------~-~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~----------------- 269 (309)
+ ...-..+.|...|++|+-|+-=| |+|.++.+++.++.+-..
T Consensus 255 ~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~ 333 (558)
T KOG0882|consen 255 GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKS 333 (558)
T ss_pred ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhc
Confidence 0 01123578999999999998887 999999998776554211
Q ss_pred -C-------CCCcEEEECCCeeEEEEccceEEEee
Q 021648 270 -D-------TEPPVIKWTPGSLMFVTGSSELSFWI 296 (309)
Q Consensus 270 -~-------~~v~~l~~~p~~~~l~s~~~d~~~~~ 296 (309)
. +.-+.+.+.+|-.+++++-.--++++
T Consensus 334 ~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfyl 368 (558)
T KOG0882|consen 334 NLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYL 368 (558)
T ss_pred cchhhhhhhccCcccccCCCCeEEEeeeecceEEE
Confidence 0 11123456666677777776655553
No 273
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=3.5e-10 Score=104.66 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=95.7
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
...++|+.|+...+|++|+-+.+.|+.|+..|.|+++++.+|........|+.+++.+.-+.++...+.++.-+ ..-..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-SPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-CchHH
Confidence 44678999999999999999999999999999999999999999999999999999999888998877765321 33677
Q ss_pred EEEccC-CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648 82 LLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133 (309)
Q Consensus 82 ~~d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~ 133 (309)
+|++.+ +...++|. .-.++.|+.....-+-|..-....+||+.++...
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 899854 44444443 3456777754332222322345678898877543
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.00 E-value=1.3e-08 Score=85.15 Aligned_cols=208 Identities=14% Similarity=0.231 Sum_probs=136.4
Q ss_pred CccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE-cCCCc-----------------------------------
Q 021648 1 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD-VTAAT----------------------------------- 44 (309)
Q Consensus 1 ~~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd-~~~~~----------------------------------- 44 (309)
|.+++....|.+.|+.+-|+-...++++.+.|+.+ .|- .+.+.
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 34567778999999999999888999999998775 343 22221
Q ss_pred ------eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc-eEEEeeecccCEEEEEecCCCCeEEEec
Q 021648 45 ------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGS 117 (309)
Q Consensus 45 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s 117 (309)
.+.++.+|...+.++++.+....+++++. |..+.+||+-.++ ....+.+|.+.|..+...+--+.++|++
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~---d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS---DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccc---cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence 12235566667778888877767776664 8899999987654 3456889999999999888888999999
Q ss_pred CCCcEEEeeCCCceeeeee-----------e----------------ecC---------ceeEEECCCCcEEEEEECCEE
Q 021648 118 LDRTVLLWDQRAEKCQGLL-----------R----------------VQG---------RPAAAYDDQGLVFAVAFGGYI 161 (309)
Q Consensus 118 ~Dg~v~~Wd~~~~~~~~~~-----------~----------------~~~---------~~~~~~~~~~~~~~~~~~~~i 161 (309)
.||.|.+||+...+.+..- + +.. .+..+.+....+...+.+-.+
T Consensus 260 edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~v 339 (404)
T KOG1409|consen 260 EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSV 339 (404)
T ss_pred CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEE
Confidence 9999999998643321100 0 000 000111122223334444456
Q ss_pred EEEECCC-----CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648 162 RMFDARK-----YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 162 ~~~d~~~-----~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~ 214 (309)
|+-|... .++.++.++ +.....+..+.+...-..|+++|.|..|+|||.+.
T Consensus 340 R~~~~c~~~i~~~~~t~LA~p--hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 340 RVCDSCYPTIKDEERTPLAIP--HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEecccchhhhcCCCCccccc--cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 6665321 111122221 11224567777777778899999999999999753
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=83.20 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=144.6
Q ss_pred EEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEE
Q 021648 36 RLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 115 (309)
Q Consensus 36 ~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 115 (309)
.+|...+-..-..+.....++..++++|-|.++++.-. ..|.+|+-.....+..+ ....|..+.|+|.+++|.|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~----~~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA----AGVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc----cceEEccccchhheeee--ecCCceecccCcccceeee
Confidence 45554444444455557778899999999998876543 35899987765533333 3457899999999999999
Q ss_pred ecCCCc---------------EEEeeCCCceeeeeeeecCce-----eEEECCCCcEEEEEECCEEEEEEC-CCCCcCCc
Q 021648 116 GSLDRT---------------VLLWDQRAEKCQGLLRVQGRP-----AAAYDDQGLVFAVAFGGYIRMFDA-RKYEKGPF 174 (309)
Q Consensus 116 ~s~Dg~---------------v~~Wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~d~-~~~~~~~~ 174 (309)
-+.... +.+||+.++..+..+.....+ ..-++.+..+.+-..+..++++++ .+....++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~ 168 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPF 168 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCch
Confidence 886544 899999999877665443322 334455555555556778888884 33333333
Q ss_pred eEEEeCCCCCCCeEEEEccCC--CEEEE-----EeCCCcEEEEECCCCeEeEEe--------------------------
Q 021648 175 DIFSVGGDISDANVVKFSNDG--RLMLL-----TTMEGHIHVLDSFRGTLLSTY-------------------------- 221 (309)
Q Consensus 175 ~~~~~~~~~~~~~~v~~s~dg--~~l~~-----~~~dg~v~i~d~~~~~~~~~~-------------------------- 221 (309)
.... ...+....+||.| ..|+. .+...++++|.+..+..+.+.
T Consensus 169 ~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 169 KNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred hhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 2221 1234455555543 22222 223345555544332222110
Q ss_pred -----------------------eecCCCCCccceEEECCCCCEEEEEc--CCCcEEEEECCCCceEEEeecCCCCCcEE
Q 021648 222 -----------------------NVKPVSRNSTLEASFSPEGMFVISGS--GDGSVYAWSVRSGKEVASWMSFDTEPPVI 276 (309)
Q Consensus 222 -----------------------~~~~~~~~~~~~~~~sp~g~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l 276 (309)
...-....+|.+.+|+|.++.+++.+ .+..+.++|++.. ....+ -.+.-+.+
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~ 321 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTI 321 (561)
T ss_pred eecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccc
Confidence 00001135677889999887776655 6788999999764 22222 22344556
Q ss_pred EECCCeeEEEEccce
Q 021648 277 KWTPGSLMFVTGSSE 291 (309)
Q Consensus 277 ~~~p~~~~l~s~~~d 291 (309)
.|+|.+++++.++-|
T Consensus 322 ~fsp~~r~il~agF~ 336 (561)
T COG5354 322 FFSPHERYILFAGFD 336 (561)
T ss_pred cccCcccEEEEecCC
Confidence 677777666665543
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=2e-09 Score=62.65 Aligned_cols=38 Identities=34% Similarity=0.660 Sum_probs=36.3
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd 126 (309)
+++.++.+|.+.|++++|+|++++|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56889999999999999999999999999999999997
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.95 E-value=2.2e-07 Score=76.37 Aligned_cols=241 Identities=16% Similarity=0.172 Sum_probs=134.3
Q ss_pred cceEEEEeC---CCCC-EEEEeeCCCcEEEEEcCCCceeeeeec---cccc---eeEEEEecCCCEEEEEcCCCCCceeE
Q 021648 12 GRISSMDFH---KSSS-YLVTASDDESIRLYDVTAATCLKTINS---KKYG---VDLVCFTSHPTTVIYSSKNGWDESLR 81 (309)
Q Consensus 12 ~~V~~i~~s---~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~~~~s~~g~d~~i~ 81 (309)
..+..+.|. .+|. .++-+-.+|.|.++.....+....+++ .... ...+.|++.+..++++-+ ++.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~ 146 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSIS 146 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEE
Confidence 345566664 3455 566777788999987654443333332 2222 234567777777776654 44555
Q ss_pred EEEccCCce--EEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCCCce-eeee-e--eecCceeEEEC-CCC-cE
Q 021648 82 LLSLHDNKY--LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGL-L--RVQGRPAAAYD-DQG-LV 152 (309)
Q Consensus 82 ~~d~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~-~--~~~~~~~~~~~-~~~-~~ 152 (309)
.-+...... +...+.|.-+++...|+. +.+.+.|||.|+.+..||+|.++ ++.. . +..+..+...+ +.+ .+
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence 444433322 346789999999999986 46789999999999999999433 2221 1 11222222222 333 45
Q ss_pred EEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEe--EEeeecCCCC
Q 021648 153 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVSR 228 (309)
Q Consensus 153 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~~ 228 (309)
+++++|..|++||.|+..++-++.. -...|..++-+|.- +.++++-.+| .+|.+...+... ..+..+..|.
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred EEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccc
Confidence 5566899999999998765433221 11456777777743 3333333333 355554432211 1122222333
Q ss_pred CccceEEECCCCCEEEEEc-CCCcEE-EEECCCC
Q 021648 229 NSTLEASFSPEGMFVISGS-GDGSVY-AWSVRSG 260 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s-~Dg~i~-vwd~~~~ 260 (309)
.-+..-.|..-..++||++ .|..++ +|-..++
T Consensus 302 Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 3222233433335688864 466644 6655444
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=2.9e-08 Score=84.55 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=105.4
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce----eeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.+..+..+|.++++|.+-.+...-++++..... +..... ......+.|......+..+-..|-.+.+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556678888888888887766777654322 111111 112234445455555555555565677777776654
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCC
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 168 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 168 (309)
. ...+-||-..+..|+++||+++++|+..|..||+-.+-....+..+..
T Consensus 143 ~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------------------------------ 191 (390)
T KOG3914|consen 143 R-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------------------------------ 191 (390)
T ss_pred C-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------------------------------
Confidence 3 345668999999999999999999999999999754322111111111
Q ss_pred CCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee
Q 021648 169 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 222 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~ 222 (309)
||..=|..++.- +++.|++++.|+++++||..+|++++++.
T Consensus 192 ------------GH~eFVS~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 192 ------------GHKEFVSTISLT-DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ------------ccHhheeeeeec-cCceeeecCCCCcEEEEecccCCcccccc
Confidence 122223334443 34558899999999999999999887764
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.9e-07 Score=83.22 Aligned_cols=271 Identities=13% Similarity=0.147 Sum_probs=166.0
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc---------------eeeeeeccccceeEEEEecCCCEEEEEcCCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 75 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g 75 (309)
+....+++|+....++|-||.||.+++-.+.+.. .-+++++|+..|..+.|..+...+- +|.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT-tSD-- 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT-TSD-- 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccc-ccC--
Confidence 4567899999999999999999999999775421 2357899999999999987665544 432
Q ss_pred CCceeEEEEccCCceEEEe--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-eeeecCceeEEECCCC-c
Q 021648 76 WDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQG-L 151 (309)
Q Consensus 76 ~d~~i~~~d~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~~~~~~~~~~~~~~~-~ 151 (309)
.++-|-+|-+..|.-...+ ...+..|.+++|+.||..+...-.||.|.+=.++.++.-. .++......+..+++. .
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence 3788999998766422111 2245678899999999887776677766654433322110 1111111112233332 3
Q ss_pred EEEEEECCEEEEEECCCCCcCCceE---EEeCCC----CCCCeEEE--------EccCCCEEEEEeCCCcEEEEECCCCe
Q 021648 152 VFAVAFGGYIRMFDARKYEKGPFDI---FSVGGD----ISDANVVK--------FSNDGRLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~----~~~~~~v~--------~s~dg~~l~~~~~dg~v~i~d~~~~~ 216 (309)
.+..-..|.+.++|....-..+++. ....+. ...+..+. .-||-..++.+-.+|++.+..-....
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 3334446788888743210000000 000000 00111222 24578889999999998886432211
Q ss_pred EeEEeeecCCCCCccceEEECCCCCEEEEEcCCC---------cEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEE
Q 021648 217 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 287 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg---------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s 287 (309)
....+.. .-.+..+.|+|+|..||.+|.|. .|..+.. -|+.+.++....+.|+.++|-..|..++.
T Consensus 251 ~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 251 EPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred CCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEE
Confidence 1111111 13455688999999999998864 3444443 57778888888889999999888866655
Q ss_pred cc
Q 021648 288 GS 289 (309)
Q Consensus 288 ~~ 289 (309)
+-
T Consensus 326 Av 327 (1189)
T KOG2041|consen 326 AV 327 (1189)
T ss_pred Ee
Confidence 43
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=8.3e-07 Score=78.83 Aligned_cols=238 Identities=17% Similarity=0.262 Sum_probs=142.9
Q ss_pred cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC-----------CcE
Q 021648 54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----------RTV 122 (309)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-----------g~v 122 (309)
-.-+.+.|+|.|+++++--. .-|.+|-=++-..+..|. |. .|.-++|||..++|+|-|.. ..+
T Consensus 211 WTetyv~wSP~GTYL~t~Hk----~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHK----QGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred ceeeeEEecCCceEEEEEec----cceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 34567899999999887643 348888543322233332 43 47889999999999998841 588
Q ss_pred EEeeCCCceeeeeeeecC--c---eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCE
Q 021648 123 LLWDQRAEKCQGLLRVQG--R---PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 197 (309)
Q Consensus 123 ~~Wd~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~ 197 (309)
+|||++++.....+.... . +..-.+.++.++|....+.|.+|+..++..- +..+ ...+.+....+||.+.+
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ll--d~Ks--lki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLL--DKKS--LKISGIRDFSWSPTSNL 360 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeee--cccc--cCCccccCcccCCCcce
Confidence 999999998776665421 1 2345577888999888899999986543210 0001 12234556667777666
Q ss_pred EEEEeCC-----CcEEEEECCC----------------------CeEeE----------------Eeeec-----CC---
Q 021648 198 MLLTTME-----GHIHVLDSFR----------------------GTLLS----------------TYNVK-----PV--- 226 (309)
Q Consensus 198 l~~~~~d-----g~v~i~d~~~----------------------~~~~~----------------~~~~~-----~~--- 226 (309)
||.=+.. -++.+..+.+ |..+. .+++. .+
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 6532211 0122211111 11110 00000 00
Q ss_pred ---CCCccceEEECCCCCEEEEEcCC---CcEEEEECCC-C---ceEEEeecCCCCCcEEEECCCeeEEEEcc-----ce
Q 021648 227 ---SRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS-G---KEVASWMSFDTEPPVIKWTPGSLMFVTGS-----SE 291 (309)
Q Consensus 227 ---~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~-~---~~~~~~~~~~~~v~~l~~~p~~~~l~s~~-----~d 291 (309)
....+...+|-|.|..+++-+.. .++.+|.+.+ . ..+..+.. ...+.|.|+|.|+.++.+. .+
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccc
Confidence 12345567899999877666443 4788888873 2 22444433 4568899999999876654 46
Q ss_pred EEEeeecCCCcc
Q 021648 292 LSFWIPDLSKLG 303 (309)
Q Consensus 292 ~~~~~~~~~~~~ 303 (309)
+.+...+.+.+.
T Consensus 519 l~F~D~~~a~~k 530 (698)
T KOG2314|consen 519 LEFYDTDYADLK 530 (698)
T ss_pred eEEEecchhhhh
Confidence 777776665543
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=4.8e-08 Score=83.20 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=96.9
Q ss_pred EEEEecCCCCeEEEecCCCcEEEeeCCCcee----eeeeeecCceeE--EECCCCcEEEEEECC---EEEEEECCCCCcC
Q 021648 102 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQGRPAA--AYDDQGLVFAVAFGG---YIRMFDARKYEKG 172 (309)
Q Consensus 102 ~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~i~~~d~~~~~~~ 172 (309)
..+..+++++.|+.+-.++...+.+++.... .....+...+.. .......++.+-.-| .+.+|....
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~---- 141 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS---- 141 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc----
Confidence 3445566777777776666665666543322 112222222211 111222222222223 344443322
Q ss_pred CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcE
Q 021648 173 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 252 (309)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i 252 (309)
......-||.+-+..|++|||++.++++.-|++|++-.......+..|.. +|..-|..++.-+ ++.|+|||.|+++
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~-~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD-NYLLLSGSGDKTL 217 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc-CceeeecCCCCcE
Confidence 11233446778889999999999999999999999976655555555543 3556666777754 5679999999999
Q ss_pred EEEECCCCceEEEe
Q 021648 253 YAWSVRSGKEVASW 266 (309)
Q Consensus 253 ~vwd~~~~~~~~~~ 266 (309)
++||+.+++.+.++
T Consensus 218 r~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 218 RLWDITSGKLLDTC 231 (390)
T ss_pred EEEecccCCccccc
Confidence 99999999877654
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.8e-06 Score=75.55 Aligned_cols=246 Identities=9% Similarity=0.167 Sum_probs=144.3
Q ss_pred cEEEEEcCCCceeeeeecc---ccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCC
Q 021648 34 SIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 110 (309)
Q Consensus 34 ~v~iWd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~ 110 (309)
.+-+|.....+...+...+ ..++...+++++|..++++. +..++|++..+++.+.+.... .+.++.|+|-+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~----~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g 85 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD----NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKG 85 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc----CCeEEEEEccCCcEEEEeccc--eeeeeeecccc
Confidence 4566765543333332222 33467888999998888875 678999999888644444433 78999999999
Q ss_pred CeEEEec-----CCC-----cEEEeeCCCceeeeeeee--cCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEE
Q 021648 111 DCFISGS-----LDR-----TVLLWDQRAEKCQGLLRV--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS 178 (309)
Q Consensus 111 ~~l~s~s-----~Dg-----~v~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 178 (309)
++|.|-- .|+ .+++|+.++......+.. +..-...++.+..+.+--..+.+.+|++.+++.. ...+
T Consensus 86 ~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl- 163 (566)
T KOG2315|consen 86 NYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKL- 163 (566)
T ss_pred cccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccce-eeee-
Confidence 8876532 232 456898887433333321 1111233444555554445677888887654321 1111
Q ss_pred eCCCCCCCeEEEEccCC--CEEEE-----EeCCCc---------------------------------------------
Q 021648 179 VGGDISDANVVKFSNDG--RLMLL-----TTMEGH--------------------------------------------- 206 (309)
Q Consensus 179 ~~~~~~~~~~v~~s~dg--~~l~~-----~~~dg~--------------------------------------------- 206 (309)
+...++.+.+||.+ ..+++ .|.-..
T Consensus 164 ---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 164 ---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred ---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence 11223334444431 11111 111122
Q ss_pred ------------EEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE--cCCCcEEEEECCCCceEEEeecCCCC
Q 021648 207 ------------IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVYAWSVRSGKEVASWMSFDTE 272 (309)
Q Consensus 207 ------------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~ 272 (309)
+++++.........+ ...++|.++.|+|+|+.++.+ -.=.++.|+|+ .++.+..+.. ++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~e--gp 313 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPL----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPE--GP 313 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEec----CCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCC--CC
Confidence 333333311111111 135688899999999888776 34568999999 4677776643 67
Q ss_pred CcEEEECCCeeEEEEccc-----eEEEeee
Q 021648 273 PPVIKWTPGSLMFVTGSS-----ELSFWIP 297 (309)
Q Consensus 273 v~~l~~~p~~~~l~s~~~-----d~~~~~~ 297 (309)
-+++-|+|.|++++-++- ++.+|..
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 789999999999888874 4888854
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=6.8e-08 Score=79.95 Aligned_cols=245 Identities=18% Similarity=0.318 Sum_probs=148.6
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc-e----eeeeecccc------------ceeEEEEe-cCCCEEEEEc
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-C----LKTINSKKY------------GVDLVCFT-SHPTTVIYSS 72 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~-~----~~~~~~~~~------------~v~~~~~~-~~~~~~~~~s 72 (309)
...|+++.|...|.||+||...|.|-++.-+... | ...+++|.. .+..+.+. +.+...+..+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754321 2 123444432 23334443 3333222222
Q ss_pred CCCCCceeEEEEccCCc-------------------e-----------------------EEEe-eecccCEEEEEecCC
Q 021648 73 KNGWDESLRLLSLHDNK-------------------Y-----------------------LRYF-KGHHDRVVSLSLCSS 109 (309)
Q Consensus 73 ~~g~d~~i~~~d~~~~~-------------------~-----------------------~~~~-~~h~~~v~~v~~~~~ 109 (309)
. -|.+|++|-+.... + .+.+ ..|...++++.|+.|
T Consensus 106 t--NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 106 T--NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred c--CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 1 28999999875430 0 0112 358888999999999
Q ss_pred CCeEEEecCCCcEEEeeCCCcee-eeee--eecC-------ceeEEECCC--CcEEEEEECCEEEEEECCCCCc--CCce
Q 021648 110 KDCFISGSLDRTVLLWDQRAEKC-QGLL--RVQG-------RPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEK--GPFD 175 (309)
Q Consensus 110 ~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~--~~~~-------~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~--~~~~ 175 (309)
..+++|+. |=.|.+|+++-... ...+ +... ..+..++|. ..+...++.|.|++-|+|.... .+..
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 88888874 77899998763321 1111 1110 122334443 3455566789999999984211 0111
Q ss_pred EEE----------eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCC---------CCCcc---c
Q 021648 176 IFS----------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPV---------SRNST---L 232 (309)
Q Consensus 176 ~~~----------~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~---------~~~~~---~ 232 (309)
.+. ..+..+.+..+.|+++|+++++... -+|++||... ..++.+...+-. ...++ .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 111 1112356778899999999987643 4799999865 334444322100 01122 3
Q ss_pred eEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 233 EASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 233 ~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+.||-|.+.+++||.....-++-+.+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecCCcccccccccccceeeecccc
Confidence 588999999999999998888877543
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.83 E-value=3e-05 Score=68.08 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=85.1
Q ss_pred CCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648 184 SDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 262 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~ 262 (309)
..|....+..+++-++.|..|| .+-|+|..+++.... + ..-+.+-++..+|||++++.+-.-..|-+.|+.+++.
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-e---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 3456666777888888999998 899999988775432 2 1235677899999999999999889999999999875
Q ss_pred EEEeecCCCCCcEEEECCCeeEEEEccce------EEEeeecC
Q 021648 263 VASWMSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL 299 (309)
Q Consensus 263 ~~~~~~~~~~v~~l~~~p~~~~l~s~~~d------~~~~~~~~ 299 (309)
-..=..-.+-|+.+.|||+++.+|-+-.+ ++++..+.
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 33323344678999999999999998765 45554444
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=2.7e-06 Score=69.23 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=133.7
Q ss_pred CEEEEeeCCCcEEEEEcCCCcee-eeeeccccceeEEEEecCCC-EEEEEcCCCCCceeEEEEccCCceEEEeeeccc--
Q 021648 24 SYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-- 99 (309)
Q Consensus 24 ~~l~t~s~D~~v~iWd~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~-- 99 (309)
.+||.||.-|...+|...+.+.. +....+...|+..--..+.. .+..++. |.++++.+++.+...... |..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~--h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAV--HNQNL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCccccee--ecccc
Confidence 58899999999999998764432 22223333232211111111 2233332 889999988765433222 333
Q ss_pred CEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeee-eeec----CceeEEECCCCcEEEEE-ECCEEEEEECCCCCcCC
Q 021648 100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-LRVQ----GRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGP 173 (309)
Q Consensus 100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~ 173 (309)
.+.++++++|++++++.+.-..|..+.+........ +... ..-...++.....+|++ .||++.+||+|....+-
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 388999999999999999999999998754432221 1111 11233445555566655 58999999999865432
Q ss_pred ceEEEeC-CCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECCCCeEeEEeeecCC-----CCCccceEEECCCCCEEEE
Q 021648 174 FDIFSVG-GDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPEGMFVIS 245 (309)
Q Consensus 174 ~~~~~~~-~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~sp~g~~l~s 245 (309)
...-.-. .+...++.+.||+-| .+|...-.-+.+++.|++++...+.....+- ....+....|+.++.-+.+
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 2221111 244578899999877 3455555668899999988765544332110 0112344456666655555
Q ss_pred EcCCCcEEEEECC
Q 021648 246 GSGDGSVYAWSVR 258 (309)
Q Consensus 246 ~s~Dg~i~vwd~~ 258 (309)
.+++. +.-|++.
T Consensus 320 ~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 320 KNELQ-GAEYNIL 331 (344)
T ss_pred ccchh-hheeecc
Confidence 55443 4445543
No 286
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.79 E-value=5.9e-06 Score=68.76 Aligned_cols=219 Identities=20% Similarity=0.201 Sum_probs=127.6
Q ss_pred CCCcEEEEEcCCCceeeeeeccccceeEEE-EecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCC
Q 021648 31 DDESIRLYDVTAATCLKTINSKKYGVDLVC-FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 109 (309)
Q Consensus 31 ~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~ 109 (309)
.+++|..||..+|+.+.........-..++ ..+++..++++.. ++.+..+|..+|+.+..+.. .+.+..... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAPV-VD 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-cccccceee-ec
Confidence 378999999999998877654221111111 2335556666532 78999999999998877764 222111112 23
Q ss_pred CCeEEEecCCCcEEEeeCCCceeeeee-eecC-----c--eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCC
Q 021648 110 KDCFISGSLDRTVLLWDQRAEKCQGLL-RVQG-----R--PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG 181 (309)
Q Consensus 110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~-~~~~-----~--~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 181 (309)
+..++.++.|+.+..+|.++++..... .... . ....+ ..+.+++...++.+..+|+++.+. .-......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL--LWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE--EEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE--EEEeecCC
Confidence 445566667889999999999887663 2210 0 11111 134455455588999999876432 00111111
Q ss_pred CC--------CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648 182 DI--------SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253 (309)
Q Consensus 182 ~~--------~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~ 253 (309)
.. .+...-....++ .+.....++.+.-+|..+++.+- ... .. ... ....+++..|+.++.|+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~-~~--~~~-~~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKP-IS--GIY-SLPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EEC-SS---EC-ECEECCCTEEEEEETTTEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Eec-CC--Ccc-CCceeeCCEEEEEeCCCEEE
Confidence 11 011122223345 66666667754444999998653 221 11 111 12457888888888999999
Q ss_pred EEECCCCceEE
Q 021648 254 AWSVRSGKEVA 264 (309)
Q Consensus 254 vwd~~~~~~~~ 264 (309)
.||+.+++.+-
T Consensus 226 ~~d~~tG~~~W 236 (238)
T PF13360_consen 226 ALDLKTGKVVW 236 (238)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCCEEe
Confidence 99999998653
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2e-07 Score=80.75 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=167.7
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.|.+.|+-+.-. -.+++.++|.||.++.|--.. +.. -
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~-------------isG-----------------------------v 43 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR-------------ISG-----------------------------V 43 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCC-------------ccc-----------------------------e
Confidence 477788766443 356888999999998885320 000 0
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecC-CCcEEEeeCCCceeeeeeee---cCceeEEECCCC--cEEEEE--ECCE
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRV---QGRPAAAYDDQG--LVFAVA--FGGY 160 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~v~~Wd~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~ 160 (309)
+.++-+..|...|.+++.+.++..+.|.+. |..++++|+++-.....++. ++...+.+++.. ..++++ .++.
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence 233445668888888888889989999777 99999999876544333332 333344444432 234433 3688
Q ss_pred EEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC------CeEeEEee-----e-cCCCC
Q 021648 161 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR------GTLLSTYN-----V-KPVSR 228 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~------~~~~~~~~-----~-~~~~~ 228 (309)
|.++|-+....+. .+...-|.+++..+.+++-+..+++....|.|.-|.... .++.-.+. . .+-..
T Consensus 124 i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 124 IFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred cEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 9999866432221 233344678899999999999999999999999998752 11110110 0 01112
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee--------------------------------cCC-CCCcE
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------------------------SFD-TEPPV 275 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~--------------------------------~~~-~~v~~ 275 (309)
....++.|+|+|..+.+-+.|..|++++..+++.+..+- .|. ..-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 345678999999999999999999999999987543220 122 22355
Q ss_pred EEECCCeeEEEEccc-eEEEeeecCCCccccccC
Q 021648 276 IKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYVGR 308 (309)
Q Consensus 276 l~~~p~~~~l~s~~~-d~~~~~~~~~~~~~~~~~ 308 (309)
+.|...+++|..|+. .+++-..+-..+-++.|+
T Consensus 282 ~~fdes~~flly~t~~gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILGIKVINLDTNTVVRILGK 315 (558)
T ss_pred eEEcCCCCEEEeecceeEEEEEeecCeEEEEecc
Confidence 788888999888886 467766666666665554
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.78 E-value=2.8e-05 Score=76.66 Aligned_cols=284 Identities=16% Similarity=0.241 Sum_probs=169.7
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEE----EcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc-
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL- 85 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iW----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~- 85 (309)
.+.|.++.+-++...++.+..+|.|.+. |..+. .+.....-..++.+++|+||.+.++.... ++++-+.+-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~~ 150 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTRD 150 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEecc
Confidence 4678999999999989899999999998 44432 22333344557999999999998877653 334433321
Q ss_pred --------------cCCceEE--------Eeee------------------------cccCEEEEEecCCCCeEEEecC-
Q 021648 86 --------------HDNKYLR--------YFKG------------------------HHDRVVSLSLCSSKDCFISGSL- 118 (309)
Q Consensus 86 --------------~~~~~~~--------~~~~------------------------h~~~v~~v~~~~~~~~l~s~s~- 118 (309)
...+.+. .|+| +.+.-..++|-.||.+||..+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1111110 0111 2234456789999999988764
Q ss_pred -----CCcEEEeeCCCceeeeeee-ecC-ceeEEECCCCcEEEEEEC----CEEEEEECCCCCcCCceEEEeCCCCCCCe
Q 021648 119 -----DRTVLLWDQRAEKCQGLLR-VQG-RPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDAN 187 (309)
Q Consensus 119 -----Dg~v~~Wd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 187 (309)
-+.+|+|+- .+....+-. ..+ ....+..|.|.++++..- ..|.+|+--..+.+.|.+. .......+.
T Consensus 231 ~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCCCCceee
Confidence 268999994 455433221 111 234567788988887752 4566666322222222221 112335678
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC-CCEEEEEcCCCcEEEEE----CCCCc-
Q 021648 188 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWS----VRSGK- 261 (309)
Q Consensus 188 ~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~s~s~Dg~i~vwd----~~~~~- 261 (309)
.+.+++|+..|+.-..|. |++|-.....-.-..+........+..+.|+|. ...|.....+|.+..++ +..+.
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 999999999999976555 999987655422222222112223344899994 56677776667665544 32211
Q ss_pred ---------------eE--EEe-------------ecCCCCCcEEEECCCeeEEEEccc--eEEEeeecCCC
Q 021648 262 ---------------EV--ASW-------------MSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSK 301 (309)
Q Consensus 262 ---------------~~--~~~-------------~~~~~~v~~l~~~p~~~~l~s~~~--d~~~~~~~~~~ 301 (309)
.+ ..| ...+..|.+++|+++...++.-.+ .+.+|.++...
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 00 001 124678899999998854444443 37888876643
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=6.4e-06 Score=68.53 Aligned_cols=217 Identities=21% Similarity=0.182 Sum_probs=124.5
Q ss_pred CceeEEEEccCCceEEEeeec--ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee-EEECCCCcEE
Q 021648 77 DESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVF 153 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 153 (309)
+++|..+|..+|+.++...-- ....... ..++++.++.++.++.+..||..+++............ ......+.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 578999999999988877531 1111211 23356677777899999999999998876665533211 1123345566
Q ss_pred EEEECCEEEEEECCCCCcCCceEEEeCCCCC-CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc--
Q 021648 154 AVAFGGYIRMFDARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-- 230 (309)
Q Consensus 154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-- 230 (309)
....++.+..+|..+.+.. ........... .........++..++.+..++.|+.+|+.+|+.+-.+.........
T Consensus 81 v~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVL-WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTSEEEEEETTTSCEE-EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred cccceeeeEecccCCccee-eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 5666788999997665421 11011111111 1112233334888888888999999999999998776542211110
Q ss_pred -----cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 231 -----TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 231 -----~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
...-....++ .+..++.++.+..+|+.+++.+-... .. .+..+ ..+++..+..++.+.++..+++
T Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~-~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 160 SSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS-GIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp EEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred eeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC-CccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 0111122345 77778778864444999998664333 22 22222 2344444444445555555554
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=1e-06 Score=71.65 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=122.1
Q ss_pred eeEEEEccCCc--eEEEeeecccCEEEEEecC-----CCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee----E-EE
Q 021648 79 SLRLLSLHDNK--YLRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA----A-AY 146 (309)
Q Consensus 79 ~i~~~d~~~~~--~~~~~~~h~~~v~~v~~~~-----~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~----~-~~ 146 (309)
.+-+|++.++. .+..+ ..+.|.| .-.+|+.|+.-|...+|...++.....+.-..... . ..
T Consensus 53 sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c 125 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC 125 (344)
T ss_pred eeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc
Confidence 46677765543 23333 2344444 23478999999999999987665432221111110 0 01
Q ss_pred CCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecC
Q 021648 147 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKP 225 (309)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~ 225 (309)
.....++-+..|.+++++++.....+. . +....-.++.+++|+|++++++-+....|-.|.+.. ++.+......+
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~-~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKF-A---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccc-e---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 112234555667788888765432211 1 111112378899999999999999999999888754 33333322222
Q ss_pred CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-eE----EEeecCCCCCcEEEECCCe---eEEEEcc
Q 021648 226 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EV----ASWMSFDTEPPVIKWTPGS---LMFVTGS 289 (309)
Q Consensus 226 ~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~-~~----~~~~~~~~~v~~l~~~p~~---~~l~s~~ 289 (309)
... .-....|+.....+|++..||++.|||++.-. +. .+-+.|++.+..+.|+|.| .+|.+-+
T Consensus 202 t~D-~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 202 TSD-HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred cCC-CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence 221 12357899999999999999999999998632 22 2335789999999999855 3555533
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.76 E-value=1.4e-05 Score=70.03 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=99.2
Q ss_pred cCCCcceEEEEeCCCCCEEEEeeCCC-cEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc
Q 021648 8 RDYNGRISSMDFHKSSSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 86 (309)
Q Consensus 8 ~~h~~~V~~i~~s~~~~~l~t~s~D~-~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~ 86 (309)
.+|.+.|.-..+..+++-++-|-.|+ .+-|+|.++++..+... .-..+..+..+++|++++.+.. ..++-+.|+.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd---r~el~vidid 431 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND---RFELWVIDID 431 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC---ceEEEEEEec
Confidence 36888899999998888999999999 99999999877554333 3335788899999998888753 3466677899
Q ss_pred CCceEEEeeecccCEEEEEecCCCCeEEEecCCC----cEEEeeCCCceeeeee
Q 021648 87 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLL 136 (309)
Q Consensus 87 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg----~v~~Wd~~~~~~~~~~ 136 (309)
+++....=+...+-|+...|+|+++++|-+=.+| .|+++|+..++.....
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 9987766666778899999999999998776665 7899999887765443
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=2.6e-05 Score=64.33 Aligned_cols=168 Identities=14% Similarity=0.206 Sum_probs=104.2
Q ss_pred EEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec----C-----ceeEEECC-------CCcEEEEEECCEEEEE
Q 021648 101 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----G-----RPAAAYDD-------QGLVFAVAFGGYIRMF 164 (309)
Q Consensus 101 v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~----~-----~~~~~~~~-------~~~~~~~~~~~~i~~~ 164 (309)
=+-++|+||+..||-+..-|+|+++|+....+. .+... + ...+.+.+ .-.++...+.|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 367899999999999999999999998654322 22111 0 01111211 1246666677777777
Q ss_pred ECCCCCcCCc---eEEEeCCC-CCCCeEEEEccCCCEEEEEeCCC----c-------EEEEECCCCeEeEE---------
Q 021648 165 DARKYEKGPF---DIFSVGGD-ISDANVVKFSNDGRLMLLTTMEG----H-------IHVLDSFRGTLLST--------- 220 (309)
Q Consensus 165 d~~~~~~~~~---~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~dg----~-------v~i~d~~~~~~~~~--------- 220 (309)
-+...+...+ ..+.+..+ ...++++.++|..++|+.||... . +.-|.+-++.+...
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 6533222222 23333333 45789999999999988776421 1 33343322211100
Q ss_pred --------------e---eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC
Q 021648 221 --------------Y---NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF 269 (309)
Q Consensus 221 --------------~---~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 269 (309)
+ .........+..+..||||+.||+...+|.|.+|++.+-+...++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 0 001122345778999999999999999999999999998777766543
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=5.3e-07 Score=84.33 Aligned_cols=183 Identities=15% Similarity=0.225 Sum_probs=131.2
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 102 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~ 102 (309)
+..++-|+.-..+..+|+.+.+..+...-...++..++ .+++.+.++.. .|+|.+-|.++-+.++++..|.+.|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecc---cceEEeecCCcCceeeeeecccccee
Confidence 45666777777888889988877777666554555544 34555665543 67999999999999999999999998
Q ss_pred EEEecCCCCeEEEecC---------CCcEEEeeCCCceeeeeeeecCceeE-EEC--CCCcEEEEEECCEEEEEECCCCC
Q 021648 103 SLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPAA-AYD--DQGLVFAVAFGGYIRMFDARKYE 170 (309)
Q Consensus 103 ~v~~~~~~~~l~s~s~---------Dg~v~~Wd~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~i~~~d~~~~~ 170 (309)
+.+. .|+.|+|+|. |.-|++||+|+-+....+.++..+.. -+. -...++.++..|...+-|.....
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 7654 5789999984 66789999998776655554432221 122 23344445556777777744444
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEEC
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 212 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~ 212 (309)
+++..++.+....+.+..+++|++|..++.+..+|+|++|-.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 455555555555566889999999999999999999999973
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=9.3e-05 Score=62.05 Aligned_cols=217 Identities=13% Similarity=0.176 Sum_probs=128.6
Q ss_pred EEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEec-CCCCeEEEecCCCcEEEeeCCCceeeeee
Q 021648 58 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLL 136 (309)
Q Consensus 58 ~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~ 136 (309)
..+|.+....++++... .+.|..|+..+++... +... ...++.+. ++++.+++ ..++. .++|+.+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~--~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~-~~~~~-~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP--GGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVA-DSGGI-AVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEE-ETTCE-EEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcC--CCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEE-EcCce-EEEecCCCcEEEEe
Confidence 34555544555555432 5689999988876432 2212 26777777 66554444 44444 45598887655444
Q ss_pred eec--C-----ceeEEECCCCcEEEEEEC---------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE-E
Q 021648 137 RVQ--G-----RPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-L 199 (309)
Q Consensus 137 ~~~--~-----~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l-~ 199 (309)
... . -+....++++.++.+... +.+..++.. .+ ..... ......+.++|+||++.| +
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~--~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVA--DGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEE--EEESSEEEEEEETTSSEEEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEe--cCcccccceEECCcchheee
Confidence 331 1 123566777776665542 346666654 11 11111 112345789999999865 5
Q ss_pred EEeCCCcEEEEECCCC-e-Ee--EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcE
Q 021648 200 LTTMEGHIHVLDSFRG-T-LL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPV 275 (309)
Q Consensus 200 ~~~~dg~v~i~d~~~~-~-~~--~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~ 275 (309)
+-+..+.|..++.... . .. ..+...+...+..-.+++.++|+.+++.-..+.|.++|.. ++.+..+..-...+++
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN 229 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence 6778899999998532 2 21 1121111111234568999999998888888999999997 8877766543358899
Q ss_pred EEE-CCC-eeEEEEc
Q 021648 276 IKW-TPG-SLMFVTG 288 (309)
Q Consensus 276 l~~-~p~-~~~l~s~ 288 (309)
++| -|+ ..+++|.
T Consensus 230 ~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEESTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999 455 4566664
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=9.6e-06 Score=66.79 Aligned_cols=189 Identities=14% Similarity=0.217 Sum_probs=103.3
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-------cceeEEEEecCC---C---EEEEEcCCCCCceeE
Q 021648 15 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-------YGVDLVCFTSHP---T---TVIYSSKNGWDESLR 81 (309)
Q Consensus 15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~---~~~~~s~~g~d~~i~ 81 (309)
.-++||||+.+||-+..-|+|+++|+.. ..+..+.... ..|..+.|.... + .+++. .+++.++
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi---~Y~G~L~ 122 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI---NYRGQLR 122 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE---eccceee
Confidence 4689999999999999999999999874 4444544322 234445554322 1 22222 1355666
Q ss_pred EEEccCC---c--eEEEe--ee-cccCEEEEEecCCCCeEEEecCCCc-----------EEEeeCCCceeeeeeeecCce
Q 021648 82 LLSLHDN---K--YLRYF--KG-HHDRVVSLSLCSSKDCFISGSLDRT-----------VLLWDQRAEKCQGLLRVQGRP 142 (309)
Q Consensus 82 ~~d~~~~---~--~~~~~--~~-h~~~v~~v~~~~~~~~l~s~s~Dg~-----------v~~Wd~~~~~~~~~~~~~~~~ 142 (309)
-|-+..+ + ...++ .. +...|.++.++|..+.|+.||.... +..|-+-++.+.- +.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy------k~ 196 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY------KQ 196 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE------EE
Confidence 6654221 1 22233 22 4678999999999887776664322 1112111110000 00
Q ss_pred eEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEe-CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe
Q 021648 143 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 221 (309)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~ 221 (309)
...+ +++........+..++. .+..+.. ......+..+..||||+.||+...+|.+.+|++.+-.+....
T Consensus 197 v~~~-~~~~~~~~~~~~~~~~~--------~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 197 VTSS-EDDITASSKRRGLLRIP--------SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cccc-Cccccccccccceeecc--------ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 0000 00000000011111111 1112221 123456788999999999999999999999999776666554
Q ss_pred e
Q 021648 222 N 222 (309)
Q Consensus 222 ~ 222 (309)
.
T Consensus 268 ~ 268 (282)
T PF15492_consen 268 K 268 (282)
T ss_pred c
Confidence 4
No 296
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.70 E-value=1.3e-07 Score=93.80 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=122.4
Q ss_pred eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEE-EECCEEEEEECCCCC
Q 021648 95 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAV-AFGGYIRMFDARKYE 170 (309)
Q Consensus 95 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~ 170 (309)
+.|-..|+.+.-+|..-+-+||+.||.+++|.-..++.+-..+..+. ....+...|.-+.. ..||.+.+|....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence 33556778777788777889999999999998766666555544332 12344455554444 4689999998752
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCCCEEEEEe---CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEc
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 247 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s 247 (309)
.....-..|......+.|=. ..+++++ .++.+.+||.......... +..|...+..+++-|..+.++|||
T Consensus 2283 ---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred ---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee--eeecCCCceEEEEcCcceEEEecC
Confidence 22333333333344444433 4555543 4678999996543222111 124556678899999999999999
Q ss_pred CCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 248 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 248 ~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
.+|.|++||++..+...++.. ++ ....|++|++...+-+|++
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 999999999987666655543 45 6678999998644444433
No 297
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.69 E-value=9.9e-07 Score=72.56 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=88.3
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEcc-CCceE
Q 021648 15 SSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYL 91 (309)
Q Consensus 15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~-~~~~~ 91 (309)
-++.|++.+..++++-.+|.+-+-+...+. ..++++.|++....+.|+.....+++. +|-|+.+.-||+. .++.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt--GgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT--GGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe--cCCCceEEEEEecCCccee
Confidence 367788989899999999999854444333 345889999999999998755555544 2448999999998 44555
Q ss_pred EE-eeecccCEEEEEecC-CCCeEEEecCCCcEEEeeCC-Ccee
Q 021648 92 RY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR-AEKC 132 (309)
Q Consensus 92 ~~-~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd~~-~~~~ 132 (309)
.. .+-|+..|.++.-+| .+.+++||+.|-.|++||.| .+++
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 44 567888999988775 57799999999999999988 3443
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=5.6e-05 Score=68.04 Aligned_cols=255 Identities=11% Similarity=0.058 Sum_probs=142.5
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 102 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~ 102 (309)
+..+..++.++.+.-+|.++|+.+............-.. .+..++.... ++.+..+|.++|+.++.+........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence 345666778999999999999988765543211111111 2334555442 67899999999998887753211100
Q ss_pred E-EEecC--CCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648 103 S-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFAVAFGGYIRMFDA 166 (309)
Q Consensus 103 ~-v~~~~--~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~d~ 166 (309)
. ..-+| .+..++.++.++.+...|.++++.......... ..... .++.++.++.++.+..+|.
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALDL 273 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEEC
Confidence 0 00011 123566677789998888888765543322110 00011 2455666677888888887
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
.+.+. ..... ....... ..++..+...+.+|.++.+|..+|+.+=..... .......... .+.+|+.+
T Consensus 274 ~tG~~----~W~~~--~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~ 341 (394)
T PRK11138 274 RSGQI----VWKRE--YGSVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVG 341 (394)
T ss_pred CCCCE----EEeec--CCCccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEE
Confidence 65432 11111 0111111 124556667778999999999888764322110 0010011111 35678889
Q ss_pred cCCCcEEEEECCCCceEEEeecCCCCCcE-EEECCCeeEEEEccceEEEeee
Q 021648 247 SGDGSVYAWSVRSGKEVASWMSFDTEPPV-IKWTPGSLMFVTGSSELSFWIP 297 (309)
Q Consensus 247 s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~-l~~~p~~~~l~s~~~d~~~~~~ 297 (309)
+.||.+++.|..+++.+.........+.+ ..+ .+++ +..++.+.+++..
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~-l~v~t~~G~l~~~ 391 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDK-LLIQARDGTVYAI 391 (394)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCE-EEEEeCCceEEEE
Confidence 99999999999999987766443322221 112 2344 4444556555543
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.6e-07 Score=77.49 Aligned_cols=166 Identities=19% Similarity=0.158 Sum_probs=106.8
Q ss_pred EEecCCCcEEEeeCCCceeeeeeeecCceeEEEC-CCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648 114 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 192 (309)
Q Consensus 114 ~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s 192 (309)
++.+.+..+.+-|.+++.......-...-..-|. .+..++.+...|.|..+|+|...++.......--|.+.+.++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 5556677788888877754433211111111122 245677778899999999987644432221111244556665544
Q ss_pred c-CCCEEEEEeCCCcEEEEECCCCeE---eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec
Q 021648 193 N-DGRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS 268 (309)
Q Consensus 193 ~-dg~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 268 (309)
. ++.+|++.+++|+|.+||++.-+. +..++.|.... .-.-+-..|....++++|.|...|||.++.+..+.+++-
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~-a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS-AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccc-cccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 4 788999999999999999876555 66666543221 122344567889999999999999999999998887642
Q ss_pred C----CCCCcEEEECC
Q 021648 269 F----DTEPPVIKWTP 280 (309)
Q Consensus 269 ~----~~~v~~l~~~p 280 (309)
- .-.+++++|..
T Consensus 387 ~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFDS 402 (425)
T ss_pred CCccccccccceehhc
Confidence 2 12355666654
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.65 E-value=2.2e-06 Score=71.17 Aligned_cols=232 Identities=15% Similarity=0.250 Sum_probs=140.8
Q ss_pred ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc-----eEEEeeecc------------cCEEEEEecCCCC--eEEE
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YLRYFKGHH------------DRVVSLSLCSSKD--CFIS 115 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~--~l~s 115 (309)
.++.+.|...|.+++++..+ +.|-+|.-+... ....|++|. ..|..+.|..++. .|+-
T Consensus 28 ~ItaVefd~tg~YlatGDkg---GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 28 KITAVEFDETGLYLATGDKG---GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred eeeEEEeccccceEeecCCC---ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46677777777787776442 567777643321 122355553 3577888886543 5777
Q ss_pred ecCCCcEEEeeCCCceeee----------------------ee---eecC----------------c----eeEEECCCC
Q 021648 116 GSLDRTVLLWDQRAEKCQG----------------------LL---RVQG----------------R----PAAAYDDQG 150 (309)
Q Consensus 116 ~s~Dg~v~~Wd~~~~~~~~----------------------~~---~~~~----------------~----~~~~~~~~~ 150 (309)
.+.|++|++|.+......- .+ ++.. + .+..+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999875431100 00 0000 0 112223344
Q ss_pred cEEEEEECCEEEEEECCCCCcCCceEEEeCCCC-----CCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEe------
Q 021648 151 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLL------ 218 (309)
Q Consensus 151 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~------ 218 (309)
..+..+.+-.|.+|++.... +.+.+..+.++. .-+++..|+|.- ..+...+..|.|++-|++...+-
T Consensus 185 et~lSaDdLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSADDLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeeccceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 45555667789999876533 455555555443 224566788865 45566778999999998732211
Q ss_pred EEeeec-------CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC-ceEEEeecC------------CCCCc---E
Q 021648 219 STYNVK-------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-KEVASWMSF------------DTEPP---V 275 (309)
Q Consensus 219 ~~~~~~-------~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~------------~~~v~---~ 275 (309)
...... ......+..+.|+|+|+++++-+. -+++|||+... .++.+++.| +..|. .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 110000 111345677899999999998866 46999999764 457776544 22232 3
Q ss_pred EEECCCeeEEEEccce
Q 021648 276 IKWTPGSLMFVTGSSE 291 (309)
Q Consensus 276 l~~~p~~~~l~s~~~d 291 (309)
+.||.|.+.+.+|+..
T Consensus 343 isfSgd~~~v~sgsy~ 358 (460)
T COG5170 343 ISFSGDDKHVLSGSYS 358 (460)
T ss_pred EEecCCcccccccccc
Confidence 7888888888888864
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=2.1e-07 Score=85.18 Aligned_cols=123 Identities=21% Similarity=0.282 Sum_probs=89.7
Q ss_pred eEecCCCcceEEEEeCCCC-CEEEEeeCCCcEEEEEcCCCc-eeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 5 MSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~-~~l~t~s~D~~v~iWd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
..+.+|..+|+.+.|.|.. ..++|++.|..+-.||..+.. .+..+..-......+.++--...+++.+. ...|++
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---g~~i~v 184 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---GNDIFV 184 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---CCceEE
Confidence 4578999999999999854 689999999999999987543 23333322223344555432223333332 468999
Q ss_pred EEccC-CceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCc
Q 021648 83 LSLHD-NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAE 130 (309)
Q Consensus 83 ~d~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~ 130 (309)
||+.. +.++..+++|...|+.++|..- ...+.+++.|++|++||.+..
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 99865 5688999999999999999853 447899999999999997644
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=1.3e-05 Score=67.77 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=121.5
Q ss_pred EEeCCCCCEEEEee-----CCCcEEEEEcC-CCceeeeeeccccceeEEEEecCCCEEEEEcCCC---------------
Q 021648 17 MDFHKSSSYLVTAS-----DDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------------- 75 (309)
Q Consensus 17 i~~s~~~~~l~t~s-----~D~~v~iWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g--------------- 75 (309)
-.||+||++|.|.- ..|.|-|||+. +-+.+.++..+.-....+.+.|+++.++.+. +|
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN-GGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc-CCCccCcccCceecChh
Confidence 46999999998854 45689999998 6677788887766666778889998877763 23
Q ss_pred -CCceeEEEEccCCceEEE--e--eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC
Q 021648 76 -WDESLRLLSLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 150 (309)
Q Consensus 76 -~d~~i~~~d~~~~~~~~~--~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~ 150 (309)
++..+-+.|..+|+.+.. + .-|+-.|+.+++.++|..+...-+.|.- ....
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------~~~~----------------- 190 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------GDAP----------------- 190 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC-------CccC-----------------
Confidence 245666777777776554 4 3477788888888887554444333321 0000
Q ss_pred cEEEEE-ECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeC-CCcEEEEECCCCeEeEEeeecCCCC
Q 021648 151 LVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSR 228 (309)
Q Consensus 151 ~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~ 228 (309)
-+++.- .++.+...+........ -...+-+|+++++|..+++.+- .+.+.+||..++.++.....
T Consensus 191 PLva~~~~g~~~~~~~~p~~~~~~--------l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----- 257 (305)
T PF07433_consen 191 PLVALHRRGGALRLLPAPEEQWRR--------LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----- 257 (305)
T ss_pred CeEEEEcCCCcceeccCChHHHHh--------hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----
Confidence 011111 12223333321100000 1134678999999998877665 67899999999998875432
Q ss_pred CccceEEECCCCCEEEEEcCCC
Q 021648 229 NSTLEASFSPEGMFVISGSGDG 250 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg 250 (309)
..++.++-.+++ |++|.+.-.
T Consensus 258 ~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 258 PDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CceeeeeecCCc-eEEeCCCcc
Confidence 223445555566 666666533
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.2e-07 Score=84.05 Aligned_cols=160 Identities=22% Similarity=0.323 Sum_probs=108.1
Q ss_pred EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648 91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 170 (309)
+..+.||+..|+.+.-..+.+-|+++|.|++|++|.++...-. + + .
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~--~---~-t---------------------------- 773 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE--I---G-T---------------------------- 773 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc--c---c-c----------------------------
Confidence 5568899999999987777889999999999999998643100 0 0 0
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC--CCEEEEE-c
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISG-S 247 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~s~-s 247 (309)
..-.++...|..++..+.|-.+.++++ +.||-+++||..-+.++......+-+ +....+.--|+ ...+.+| +
T Consensus 774 --saCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcs 848 (1034)
T KOG4190|consen 774 --SACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCS 848 (1034)
T ss_pred --ceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeecc
Confidence 001223334556677888888888765 45889999999888877644433322 22223333343 3333333 7
Q ss_pred CCCcEEEEECCCCceEEEeec-----CCCCCcEEEECCCeeEEEEcc
Q 021648 248 GDGSVYAWSVRSGKEVASWMS-----FDTEPPVIKWTPGSLMFVTGS 289 (309)
Q Consensus 248 ~Dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~~p~~~~l~s~~ 289 (309)
...+++++|.+.++.+.+++- -++.+.+++..|.|+.++.+=
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L 895 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL 895 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence 899999999999887766643 345567889889888766554
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=3.7e-07 Score=73.83 Aligned_cols=163 Identities=9% Similarity=0.076 Sum_probs=95.9
Q ss_pred eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee----eeeeecCceeEEECCCCcEEEEEEC------C
Q 021648 90 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ----GLLRVQGRPAAAYDDQGLVFAVAFG------G 159 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~ 159 (309)
+.+++..|+++-..-+.+.-++.++++..||.+.+.+.+.-... ....... ....+-..+..+....- +
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeecc
Confidence 34555555544333333444567999999999999886541110 0011111 11111122222222222 3
Q ss_pred EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 160 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 160 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
..+.|+++....-.. .......+.+++-.|.. +.+++|+.||.+-+||.+.......+ ...|..+++.+-|+|
T Consensus 160 ~~~a~~~~p~~t~~~----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIP----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--LKAHKAEIWEVHFHP 233 (319)
T ss_pred ceeeecccccccccc----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--HHHhhhhhhheeccC
Confidence 445555543221111 11112347788888865 56677888999999999876444332 224667899999999
Q ss_pred -CCCEEEEEcCCCcEEEEECCC
Q 021648 239 -EGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 239 -~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
++..|.++++||.+--||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 579999999999999999975
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.62 E-value=0.00017 Score=71.31 Aligned_cols=246 Identities=13% Similarity=0.161 Sum_probs=143.4
Q ss_pred CcceEEEEeCCCCCEEEEeeC----C--CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 11 NGRISSMDFHKSSSYLVTASD----D--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~----D--~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
...-..|+|=.||.++|..+. + +.+|||+=+ |+...+-+.-..-...++|.|.|+.+++.........|-.|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 334457899999999998875 3 689999854 554333332222245789999999888765422233344443
Q ss_pred ccCCceEEEee----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee--eeeecCc---eeEEECC-------
Q 021648 85 LHDNKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGR---PAAAYDD------- 148 (309)
Q Consensus 85 ~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~~~~---~~~~~~~------- 148 (309)
++|-....|. .....|..+.|++|+..|+..-.|. |.+|-..+.+... .+..... ....+++
T Consensus 288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 2333222332 3456899999999999998877665 9999765433211 1111000 0011111
Q ss_pred --------------------------CCcEEEEEECCEEEEEECCCCC-cCCceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648 149 --------------------------QGLVFAVAFGGYIRMFDARKYE-KGPFDIFSVGGDISDANVVKFSNDGRLMLLT 201 (309)
Q Consensus 149 --------------------------~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~ 201 (309)
+....++..+..+++-.++... +||.-.+.+.- ...++.++|++++..+++-
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEE
Confidence 1223334444555555544322 23443344433 3678999999999989999
Q ss_pred eCCCcEEEEECCCCeEe--------EEeee-------cCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCCC
Q 021648 202 TMEGHIHVLDSFRGTLL--------STYNV-------KPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSG 260 (309)
Q Consensus 202 ~~dg~v~i~d~~~~~~~--------~~~~~-------~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~~ 260 (309)
..||.+.+|........ ..+.. ..........++|..+...++....+ ..+.++++...
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 99999999985332211 11111 01112345567787777766666554 67888888443
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=8.6e-05 Score=68.96 Aligned_cols=123 Identities=14% Similarity=0.184 Sum_probs=93.0
Q ss_pred ccceEecCCCcceEEEEeCCCC------------CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC---CC
Q 021648 2 EVGMSFRDYNGRISSMDFHKSS------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH---PT 66 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~------------~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 66 (309)
.+++++.-|+..|+.|.|.|.. -+||++..-|.|.+||+..+..+..++.+..++..+||-+. ..
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 3567788899999999998642 26788888999999999999999999999989999998763 32
Q ss_pred EEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecC-CCCeEEEecCCCcEEEee
Q 021648 67 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD 126 (309)
Q Consensus 67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd 126 (309)
.++.+-. | ..++-+|+..+|+..+.+...+....+..+.| |.+.|.--+..|.+.+-+
T Consensus 126 d~LlaIh-~-ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 126 DVLLAIH-G-SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred heeEEec-C-CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence 4444332 2 56899999999998887776666667677776 666666555567666554
No 307
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=6.6e-06 Score=75.47 Aligned_cols=230 Identities=13% Similarity=0.213 Sum_probs=140.7
Q ss_pred cceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeee--eccccceeEEEEecCCCEEEEEcCCCCCcee
Q 021648 3 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 80 (309)
Q Consensus 3 ~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i 80 (309)
..+++.||++.|.-+.|+.+...|-|...+|-|.+|-+-.|.=.... ...+..|..++|..+|..+..... |+.|
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---DGav 139 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---DGAV 139 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---cCCE
Confidence 46789999999999999998889999999999999998776543332 233455788999999998776654 5555
Q ss_pred EEEEccCCce-EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-----eeeecC-------c------
Q 021648 81 RLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQG-------R------ 141 (309)
Q Consensus 81 ~~~d~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-----~~~~~~-------~------ 141 (309)
-+=.+..+.. -+.++|. ....+.|++|.+.++-+-..|.+.++|...+-..+ .....+ +
T Consensus 140 IVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 5544443221 0122222 12368899999988888889999999864321100 000000 0
Q ss_pred ---eeEEECCCCcEEEEEE-CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC---------cEE
Q 021648 142 ---PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---------HIH 208 (309)
Q Consensus 142 ---~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg---------~v~ 208 (309)
+.....|+...+++++ .|.+.+.--.+...+ . ++.. + -.+....++++|..|+.++.+. .|+
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-v-v~dt-g--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP-V-VVDT-G--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC-e-EEec-c--cEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 0111224555677665 466666543332211 1 1111 1 2345568999999999888653 455
Q ss_pred EEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 209 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
.+.. -|+.+.++.. ....+..++|-..|-.+|.+
T Consensus 293 Fysp-~G~i~gtlkv---pg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 293 FYSP-YGHIVGTLKV---PGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred Eecc-chhheEEEec---CCceeeeeEEcCCceEEEEE
Confidence 5543 2555555543 33556667776655555544
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=7.4e-05 Score=67.29 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=130.2
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeecccc-ce-e-----EEE--EecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY-GV-D-----LVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 93 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~ 93 (309)
+..+..++.++.+.-+|..+|+.+........ .. . .+. ..-++..++.+. .++.+..+|.++|+.++.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEEEECCCCCCccc
Confidence 55777778889999999999998765443220 00 0 000 011234555554 267899999999998877
Q ss_pred eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCc-------eeEEECCCCcEEEEEECCEEEEEEC
Q 021648 94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFAVAFGGYIRMFDA 166 (309)
Q Consensus 94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~d~ 166 (309)
.+... .+.+--.. .+..++.+..++.+...|.++++.......... ...... .+.++....++.+..+|.
T Consensus 146 ~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEc
Confidence 65432 22221111 234566677799999999999887655433210 111111 234555556777877776
Q ss_pred CCCCcCCceEEEeCCCC--C---CCeEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 167 RKYEKGPFDIFSVGGDI--S---DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~--~---~~~~v~~s~--dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
.+.+..- . ....... . ....+..+| .+..+..++.+|.++.+|..+|+.+=...... .... ..+
T Consensus 223 ~~G~~~W-~-~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~--~~~ 293 (394)
T PRK11138 223 EQGQLIW-Q-QRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDF--AVD 293 (394)
T ss_pred cCChhhh-e-eccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCc--EEE
Confidence 6533210 0 0000000 0 000011122 23445566678999999999987664332111 1111 125
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEE
Q 021648 240 GMFVISGSGDGSVYAWSVRSGKEVAS 265 (309)
Q Consensus 240 g~~l~s~s~Dg~i~vwd~~~~~~~~~ 265 (309)
+..++.++.||.++.+|..+++.+-.
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 67888888999999999999876544
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=3.9e-05 Score=71.15 Aligned_cols=240 Identities=14% Similarity=0.172 Sum_probs=157.9
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC----------EEEEEcCCCCCceeEEE
Q 021648 14 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT----------TVIYSSKNGWDESLRLL 83 (309)
Q Consensus 14 V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~s~~g~d~~i~~~ 83 (309)
-.+++|+|.| ++|=|+. ..|-+-|..+.+.++.++.|+..|..+-|.|-+- .++.++ ....|.|-+|
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs-aD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS-ADISGRIILV 94 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe-ccccCcEEEE
Confidence 6688999977 6666654 4788889999999999999999899988876321 222233 2347899999
Q ss_pred EccCCceEEEeeecccCEEEEEecC---CCC-eEEEecCCCcEEEeeCCCceeeeeeeecCcee--EEEC--CCCcEEEE
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCS---SKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYD--DQGLVFAV 155 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~---~~~-~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~ 155 (309)
|...+..+..+..|.+++..++|-+ +.+ .|+.=..-.++.+|+..++............. ..++ +...+...
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999988889999999999999875 343 44444557799999988887665544332221 1222 22334444
Q ss_pred EECCEEEEEECCCCCc--CCceEEEeCCCC------------------CC--------CeEEEEccCCCEEEEEeCCCcE
Q 021648 156 AFGGYIRMFDARKYEK--GPFDIFSVGGDI------------------SD--------ANVVKFSNDGRLMLLTTMEGHI 207 (309)
Q Consensus 156 ~~~~~i~~~d~~~~~~--~~~~~~~~~~~~------------------~~--------~~~v~~s~dg~~l~~~~~dg~v 207 (309)
+..|.+.+-+...... .+.+.+.+..+. .+ ...++|+|.-+.++-......+
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel 254 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL 254 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence 5555555554322111 111111111110 00 0124678988888888889999
Q ss_pred EEEECCCCeEeEEeeecCCCCCccceEEECCCC--CEEEEEcCCCcEEEEECCC
Q 021648 208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g--~~l~s~s~Dg~i~vwd~~~ 259 (309)
.++|+.-...+....+ ..+.+-=+.+-|++ ..+.+.-.||.+.+|-.+.
T Consensus 255 lv~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 255 LVFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9999877666655443 33333335666765 5789999999999998765
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4.9e-05 Score=71.24 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=124.6
Q ss_pred EecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce--eEEECCC--CcEEEEEEC-C----EEEEEECCCCCcC--C
Q 021648 105 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQ--GLVFAVAFG-G----YIRMFDARKYEKG--P 173 (309)
Q Consensus 105 ~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~-~----~i~~~d~~~~~~~--~ 173 (309)
++++++..++-|+.||.|.+.+-. -+...-+...... ...+..+ ..+++.+.| + .+++||+...+.. +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 456778899999999999888632 2221222211111 1122222 345666654 2 6999998765322 1
Q ss_pred c-----eEEEeCC--CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648 174 F-----DIFSVGG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 245 (309)
Q Consensus 174 ~-----~~~~~~~--~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s 245 (309)
. .+++... ...++.+++.|.+-+.+|+|-.||.|..+...- ...............+|+.++|..+++-++=
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 1 1222222 245788999999999999999999999875311 0111111121223467889999888877333
Q ss_pred EcCCCcEEEEECCCCc-eEEEeecCCCCCcEEEECCCee-EEEEccceEEEeeecCCCcc
Q 021648 246 GSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSL-MFVTGSSELSFWIPDLSKLG 303 (309)
Q Consensus 246 ~s~Dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~-~l~s~~~d~~~~~~~~~~~~ 303 (309)
+..-..|.+|.+.... ....+..|.....|-.|++... +++++++-++++.++..+++
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPC 248 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCccee
Confidence 3445669999997433 2455777888999999999766 55666667999998877665
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=3.9e-06 Score=68.05 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=81.7
Q ss_pred eEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce-eeeeeccccceeEEEEecCCCEEEEEcCCCC--CceeE
Q 021648 5 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLR 81 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--d~~i~ 81 (309)
+.|..|+++=.+-+.+--++.++++..|+.+-+.+.+.-.. .+.+..-...-...+.-.+++.+.+...+.+ -+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 34444444444444444567899999999999998764111 1122211111112222234444433211100 12355
Q ss_pred EEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCCCcee-eeeeeecCc--eeEEEC--CCCcEEEE
Q 021648 82 LLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGR--PAAAYD--DQGLVFAV 155 (309)
Q Consensus 82 ~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~ 155 (309)
.|++...+.+..-+.-.+.|.+++-+|. ...++.|+.||.+-+||.+.... ...+..+.. ....|. ++..++++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 6665443333222333345888888885 45677888999999999876521 111211111 112232 23456666
Q ss_pred EECCEEEEEE
Q 021648 156 AFGGYIRMFD 165 (309)
Q Consensus 156 ~~~~~i~~~d 165 (309)
+.||.+-.||
T Consensus 243 sedGslw~wd 252 (319)
T KOG4714|consen 243 SEDGSLWHWD 252 (319)
T ss_pred cCCCcEEEEc
Confidence 6666655554
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.41 E-value=0.0009 Score=56.85 Aligned_cols=249 Identities=10% Similarity=0.119 Sum_probs=140.6
Q ss_pred EEEEeCC-CCCEEEEeeCCCc-EEEEEcCCCceeeeeeccccc--eeEEEEecCCCEEEEEcCC--CCCceeEEEEcc-C
Q 021648 15 SSMDFHK-SSSYLVTASDDES-IRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-D 87 (309)
Q Consensus 15 ~~i~~s~-~~~~l~t~s~D~~-v~iWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~s~~--g~d~~i~~~d~~-~ 87 (309)
..++.+| .+..++-+=.-|+ +-+||..+++.++.+...... --..+|+++++.++++-.+ ...+.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3567788 4555666666664 588999999988776543322 2246899999988876421 125789999998 4
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEEC--CCCcEEEEEECCEEEEEE
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD--DQGLVFAVAFGGYIRMFD 165 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d 165 (309)
-+.+..+..|--.-..+.+.||++.|+.+ +|-|.- ..++++....+.. -.++..|- .++.+ +.-|.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVA--NGGI~T-hpd~GR~kLNl~t-M~psL~~ld~~sG~l--------l~q~~ 155 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVA--NGGIET-HPDSGRAKLNLDT-MQPSLVYLDARSGAL--------LEQVE 155 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEE--cCCCcc-CcccCceecChhh-cCCceEEEecCCCce--------eeeee
Confidence 44566677666666778899999888777 333321 1112221111100 01111111 11111 12221
Q ss_pred CCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-------EEEEECCCCeEeEEeeec----CCCCCccceE
Q 021648 166 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-------IHVLDSFRGTLLSTYNVK----PVSRNSTLEA 234 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-------v~i~d~~~~~~~~~~~~~----~~~~~~~~~~ 234 (309)
+. ..-+...++-++.+++|..+...-..|. |.+++. +..+..+... ....+.+-+|
T Consensus 156 Lp-----------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 156 LP-----------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cC-----------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEE
Confidence 10 0112334566777777776655443332 333332 2222222211 1123567789
Q ss_pred EECCCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 235 SFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 235 ~~sp~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
+++++|++++.. =.-+++.+||..+++.+....-. .+-.|+-.+++ ++++.+..
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCc
Confidence 999999887555 45679999999999988765332 23445555556 55554443
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00015 Score=62.52 Aligned_cols=94 Identities=9% Similarity=0.163 Sum_probs=72.9
Q ss_pred EEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCC-eE
Q 021648 35 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CF 113 (309)
Q Consensus 35 v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l 113 (309)
++..+..+.+..+-+..+...+..++|+|..+.++... ..+..|++.|+++...+..+..| ..+++++|..|.. ++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~a--sl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLA--SLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeee--ccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 55555555555565666667789999999988644332 23789999999999988888888 8899999998765 56
Q ss_pred EEecCCCcEEEeeCCCce
Q 021648 114 ISGSLDRTVLLWDQRAEK 131 (309)
Q Consensus 114 ~s~s~Dg~v~~Wd~~~~~ 131 (309)
..|-..|.|.++|++...
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 677789999999998654
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.24 E-value=0.0028 Score=58.70 Aligned_cols=251 Identities=15% Similarity=0.185 Sum_probs=136.3
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeeeccccc-----ee-EEEEecCCCEEEEEcCC------CCCceeEEEEccCCceE
Q 021648 24 SYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VD-LVCFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYL 91 (309)
Q Consensus 24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~~~~~s~~------g~d~~i~~~d~~~~~~~ 91 (309)
..+..++.|+.|.-+|.++|+.+..+...... +. ...+ .+..++.++.. +.++.+..+|.++|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57777888999999999999988766543210 11 1111 12334444321 23678899999999988
Q ss_pred EEeeeccc--------------------CEE-EEEecCCCCeEEEecCCC------------------cEEEeeCCCcee
Q 021648 92 RYFKGHHD--------------------RVV-SLSLCSSKDCFISGSLDR------------------TVLLWDQRAEKC 132 (309)
Q Consensus 92 ~~~~~h~~--------------------~v~-~v~~~~~~~~l~s~s~Dg------------------~v~~Wd~~~~~~ 132 (309)
..+..... .++ ...+.+.+..++.++.|+ .+.-.|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 87754211 111 123333455666666554 788889988887
Q ss_pred eeeeeecCc----------eeEEEC--CCC----cEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648 133 QGLLRVQGR----------PAAAYD--DQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196 (309)
Q Consensus 133 ~~~~~~~~~----------~~~~~~--~~~----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~ 196 (309)
......... +..... -++ .++....+|.+..+|.++.+. +...... ....+.+| +.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~----~W~~~~~---~~~~~~~~-~~ 340 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL----ISARPEV---EQPMAYDP-GL 340 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE----eeEeEee---ccccccCC-ce
Confidence 765433211 011100 112 244455678898888876542 1111000 00112233 22
Q ss_pred EEEE-----------------EeCCCcEEEEECCCCeEeEEeeecCCCC-----CccceEEECCCCCEEEEEcCCCcEEE
Q 021648 197 LMLL-----------------TTMEGHIHVLDSFRGTLLSTYNVKPVSR-----NSTLEASFSPEGMFVISGSGDGSVYA 254 (309)
Q Consensus 197 ~l~~-----------------~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~sp~g~~l~s~s~Dg~i~v 254 (309)
.++. ...+|.+.-+|+.+|+.+=+........ .+...-.....+..|+.++.||.++.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 2221 1235677777887777654333210000 01100011126688999999999999
Q ss_pred EECCCCceEEEeecCCCCCcE--EEECCCeeEE
Q 021648 255 WSVRSGKEVASWMSFDTEPPV--IKWTPGSLMF 285 (309)
Q Consensus 255 wd~~~~~~~~~~~~~~~~v~~--l~~~p~~~~l 285 (309)
+|..+|+.+-.+.. .+.+.. +.|..++++.
T Consensus 421 ld~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 421 FDATTGKELWKFRT-PSGIQATPMTYEVNGKQY 452 (488)
T ss_pred EECCCCceeeEEEC-CCCceEcCEEEEeCCEEE
Confidence 99999998877643 333322 3344455543
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.22 E-value=0.0004 Score=64.31 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred eEEEEccCCCEEEEEe-CCCcEEEEECCCCeE------------eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648 187 NVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL------------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~-~dg~v~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~ 253 (309)
..+.+||||+++.+++ .+.+|.|+|..+... ..+.+. .....-.+|.++|+-+.|--.|..|-
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeE
Confidence 4678999999876654 589999999876442 222221 12234578999999888889999999
Q ss_pred EEECCC
Q 021648 254 AWSVRS 259 (309)
Q Consensus 254 vwd~~~ 259 (309)
.||+.+
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999976
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=4.3e-06 Score=70.37 Aligned_cols=124 Identities=13% Similarity=0.215 Sum_probs=90.1
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCC-----ceeeeeeccccceeEEEEec-CCCEEEEEcCCCCCceeEEEE
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-----TCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~i~~~d 84 (309)
++-|.++.|...++++.-|...|.|-..|+..+ .|.+.+. |...|+++..-. +..+++++ +++++|++||
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS---~M~gkikLyD 327 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMAS---DMTGKIKLYD 327 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeec---cCcCceeEee
Confidence 556888899988999999999999999999753 3333333 444566555444 33344443 4689999999
Q ss_pred ccCCce---EEEeeecccCEEEEEe--cCCCCeEEEecCCCcEEEeeCCCceeeeeeee
Q 021648 85 LHDNKY---LRYFKGHHDRVVSLSL--CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV 138 (309)
Q Consensus 85 ~~~~~~---~~~~~~h~~~v~~v~~--~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~ 138 (309)
+.--++ +..+.||-+.-.-+.+ .+....+++++.|--.|+|.++.++...+++.
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 865444 8899999765444443 45566889999999999999999987766654
No 317
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.21 E-value=3.3e-06 Score=47.66 Aligned_cols=38 Identities=34% Similarity=0.639 Sum_probs=35.2
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 39 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd 39 (309)
+..+.+..|...|.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46788899999999999999999999999999999996
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=0.00024 Score=64.34 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=58.9
Q ss_pred CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc--eEEEeeecCCCc
Q 021648 228 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL 302 (309)
Q Consensus 228 ~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~--d~~~~~~~~~~~ 302 (309)
...+.+++++|+...++.|..||+|.+||..++ +..+....-.++.++|||+|-.|+.|++ ++++|...|+.+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 356788999999999999999999999999765 4444455556788999999999988887 477777666554
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00069 Score=62.81 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=99.3
Q ss_pred ecCCCCeEE-EecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEEEEE-E----CCEEEEEECCCCCcCCceEEE
Q 021648 106 LCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA-F----GGYIRMFDARKYEKGPFDIFS 178 (309)
Q Consensus 106 ~~~~~~~l~-s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~~~~~~~~ 178 (309)
+.+||+.+. +.-..+.+.+.|.++.+....+.+.+.+ ...+.+++.++.+. + +..+...+... ......+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEc
Confidence 445665443 2334556667777766665555554433 34445555544333 2 12233332211 00000111
Q ss_pred eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-----CeEeEEeeecCCCCCccceEEECCCCCEEEEEc-CCCcE
Q 021648 179 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSV 252 (309)
Q Consensus 179 ~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s-~Dg~i 252 (309)
.. ...++.++|++... .+++|.++|..+ ...+..+.. ......+.+||||++++.++ .+.++
T Consensus 278 i~------~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 278 IA------RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred hH------HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECCCCCEEEEeCCCCCcE
Confidence 00 00134557876655 367899999987 344444332 24456799999999887775 48899
Q ss_pred EEEECCCCce------------EEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648 253 YAWSVRSGKE------------VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 298 (309)
Q Consensus 253 ~vwd~~~~~~------------~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~ 298 (309)
.|.|+.+.+. +++. .........+|.++|+...|=--| +--|..+
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 9999988553 2332 224456678999999877665545 4445544
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00013 Score=62.83 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=67.4
Q ss_pred eEecCCCcceEEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 5 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
..+.+|...|..++|||..+ ++..++.+++|+|.|+++..+...+..+ ..+..+||..+....+++.. ..+.|.+|
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl--~nG~Vlvy 263 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL--QNGMVLVY 263 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec--cCceEEEE
Confidence 34567888999999999776 7899999999999999999888888877 56889999888776665543 36789999
Q ss_pred EccCCc
Q 021648 84 SLHDNK 89 (309)
Q Consensus 84 d~~~~~ 89 (309)
|+...+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 997644
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.13 E-value=0.0043 Score=53.49 Aligned_cols=245 Identities=15% Similarity=0.163 Sum_probs=139.0
Q ss_pred EEeCCCCCEEEEee----------CCCcEEEEEcCCCceeeeeeccc---cc----eeEEEEecCCCEEEEEcCCCCCce
Q 021648 17 MDFHKSSSYLVTAS----------DDESIRLYDVTAATCLKTINSKK---YG----VDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 17 i~~s~~~~~l~t~s----------~D~~v~iWd~~~~~~~~~~~~~~---~~----v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+..+||++.+.+++ ..--|-+||..+......+.-.. .. ....+++.++++++.... .-...
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-TPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-SSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-CCCCe
Confidence 55789999888765 23368999999988777654322 11 234677888887765432 22567
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCC-CCeEEEecCCCcEEEeeCC-Cceeeeeee-e---cCce---eEEE-CCC
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQR-AEKCQGLLR-V---QGRP---AAAY-DDQ 149 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~v~~Wd~~-~~~~~~~~~-~---~~~~---~~~~-~~~ 149 (309)
|.|-|++.++.+..+.-- + |...-|. ++.|.+-+.||++.-..+. .++...... . ...+ ...+ ...
T Consensus 120 VtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 999999988877655421 1 2222232 2467788889988877765 343331110 0 0011 1122 233
Q ss_pred CcEEEEEECCEEEEEECCCCCcCCceEEEeCC--------CCCCCeEEEEccCC-CEEEEE--eCCC-------cEEEEE
Q 021648 150 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDG-RLMLLT--TMEG-------HIHVLD 211 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~s~dg-~~l~~~--~~dg-------~v~i~d 211 (309)
+.++-.++.|.|+-.|+.........-+.+.. ....-..+++++.. ++++.. +.++ .|=++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 45555778888888887643211111111110 01233456777644 444332 1222 366789
Q ss_pred CCCCeEeEEeeecCCCCCccceEEECCCCC-EEEEE-cCCCcEEEEECCCCceEEEeecCC
Q 021648 212 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVYAWSVRSGKEVASWMSFD 270 (309)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~ 270 (309)
+.+++.+.++... ..+.++..+-|.+ .|++. ..++.+.|||..+++.+.++....
T Consensus 276 ~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 276 LKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999999887653 2455788888776 44444 568999999999999998876544
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.0056 Score=54.29 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCCCEEEEe---------eCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCce
Q 021648 20 HKSSSYLVTA---------SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 90 (309)
Q Consensus 20 s~~~~~l~t~---------s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~ 90 (309)
|||+++++.. +..+.+-|||+++++....... ...+....++|+++.+++.. ++.+.+.++.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence 6788877663 2456788999998765544443 44577889999999999886 67899998877654
Q ss_pred EE-Eeee-------c---------ccCEEEEEecCCCCeEEEecC-CCcEEEe
Q 021648 91 LR-YFKG-------H---------HDRVVSLSLCSSKDCFISGSL-DRTVLLW 125 (309)
Q Consensus 91 ~~-~~~~-------h---------~~~v~~v~~~~~~~~l~s~s~-Dg~v~~W 125 (309)
++ +..| - .+.-.++-|+||+++|+.... |..|+.+
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 32 2222 0 122356789999999887754 3444444
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=3.6e-06 Score=78.87 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=121.8
Q ss_pred ceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEec-CCC-c
Q 021648 44 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDR-T 121 (309)
Q Consensus 44 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg-~ 121 (309)
+..++|+.+....++++|+.+.+.++.++. .+.|+++++.+|.......+|...|+-+.=+.||..+++.+ +.. .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 344567777778899999998888988876 56899999999998888999999999999888888665554 333 4
Q ss_pred EEEeeCCCc-eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE
Q 021648 122 VLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL 200 (309)
Q Consensus 122 v~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~ 200 (309)
..+|++.+. ...+.+ ..-.++.||..-..-+.
T Consensus 1169 saLW~~~s~~~~~Hsf-----------------------------------------------~ed~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF-----------------------------------------------DEDKAVKFSNSLQFRAL 1201 (1516)
T ss_pred HHHhccccccCccccc-----------------------------------------------cccceeehhhhHHHHHh
Confidence 568876431 100000 01134455544333334
Q ss_pred EeCCCcEEEEECCCCeEeEEeeec-CCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEEC
Q 021648 201 TTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 279 (309)
Q Consensus 201 ~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~ 279 (309)
|+.-..+.+||..++..+.++-.. .........+.|||+.+.++ .|| -+||++..+.+..|-.++- ...=.||
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FH 1275 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFH 1275 (1516)
T ss_pred cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-ccccccc
Confidence 444456677888887766653211 11111223467888877766 344 4788887776665544331 1112378
Q ss_pred CCeeEEEEccc
Q 021648 280 PGSLMFVTGSS 290 (309)
Q Consensus 280 p~~~~l~s~~~ 290 (309)
|.|..++.-++
T Consensus 1276 P~g~eVIINSE 1286 (1516)
T KOG1832|consen 1276 PSGNEVIINSE 1286 (1516)
T ss_pred CCCceEEeech
Confidence 88888877765
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00024 Score=66.34 Aligned_cols=175 Identities=11% Similarity=0.142 Sum_probs=106.3
Q ss_pred CCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee
Q 021648 64 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 143 (309)
Q Consensus 64 ~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~ 143 (309)
+.+.++.+.. ++.+++++..... +....|... .-+|.+++|||.||+|.+-.+-+.+...
T Consensus 48 ~~~~~~~GtH---~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~--------- 107 (846)
T KOG2066|consen 48 HDKFFALGTH---RGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT--------- 107 (846)
T ss_pred hcceeeeccc---cceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce---------
Confidence 3456666654 5678877764432 222234333 3468899999999998886544332211
Q ss_pred EEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-----CCEEEEEeCCCcEEEEECCCCeEe
Q 021648 144 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GRLMLLTTMEGHIHVLDSFRGTLL 218 (309)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-----g~~l~~~~~dg~v~i~d~~~~~~~ 218 (309)
.+|.. -++.+|+++|| .+.+++||.-| +.++.-.--...
T Consensus 108 -------------------~~df~----------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 108 -------------------QYDFK----------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred -------------------eEecC----------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 11111 13567778877 46788888888 666542111111
Q ss_pred EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec-C-----CCCCcEEEECCCeeEEEEccceE
Q 021648 219 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-F-----DTEPPVIKWTPGSLMFVTGSSEL 292 (309)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~-----~~~v~~l~~~p~~~~l~s~~~d~ 292 (309)
.+...+ ...++|.++.| .|.++|=++.+| |+|||+.+.+.+..++. + .-..+.+.|.+..++++-=+..+
T Consensus 152 ~~v~l~-~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v 227 (846)
T KOG2066|consen 152 DSVVLS-EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSV 227 (846)
T ss_pred cceeee-cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeE
Confidence 111111 23467888888 678999998888 99999999887766532 2 12346688988887776655556
Q ss_pred EEeeec
Q 021648 293 SFWIPD 298 (309)
Q Consensus 293 ~~~~~~ 298 (309)
.+....
T Consensus 228 ~i~~I~ 233 (846)
T KOG2066|consen 228 KICSIK 233 (846)
T ss_pred EEEEEe
Confidence 665543
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.07 E-value=0.0018 Score=63.41 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=126.4
Q ss_pred cceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648 54 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133 (309)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~ 133 (309)
..+..+.|..+++.++.+.. ++.|-+.|.++.. +.....-.+.|.+.+|+||...++-...++++.+=+. +=.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITA---LGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEec---CCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence 35667777777777776654 5577777877653 3333445578999999999999888887888776331 11111
Q ss_pred eeeeecCceeEEECCCCcEEEEEECCEEEEEE---CCCCCcCCceEEEeCC---CCCCCeEEEEccCCCEEEEEe----C
Q 021648 134 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD---ARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTT----M 203 (309)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d---~~~~~~~~~~~~~~~~---~~~~~~~v~~s~dg~~l~~~~----~ 203 (309)
...... ....+.+..+.++.+..-.=+- -|.....+..-.+..+ ..+.-..|++--||+++++.. .
T Consensus 144 ~E~~L~----~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLD----ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hccccc----cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 111110 0011122333344332110000 0000000000000000 112335688889999998732 2
Q ss_pred C-CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE---cCCCcEEEEECCC---CceEEEeecCCCCCcEE
Q 021648 204 E-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRS---GKEVASWMSFDTEPPVI 276 (309)
Q Consensus 204 d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~---s~Dg~i~vwd~~~---~~~~~~~~~~~~~v~~l 276 (309)
+ +++++||.. |.+-...+.. .+--.+++|-|.|..+|+- +.|+.|.++.... +...-.++....++..|
T Consensus 220 ~~RkirV~drE-g~Lns~se~~---~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPV---EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-chhhcccCcc---cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 799999976 4332222111 1112358999999999987 4456799998743 22223344444558999
Q ss_pred EECCCeeEEEEccc----e-EEEe
Q 021648 277 KWTPGSLMFVTGSS----E-LSFW 295 (309)
Q Consensus 277 ~~~p~~~~l~s~~~----d-~~~~ 295 (309)
+|+.++..|+...+ + +++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999988877322 2 6676
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=7e-05 Score=67.65 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=58.7
Q ss_pred CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 183 ~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+.+.+++++|+.+.++.|..||.|.+||..++..... . ..-.+..++|+|+|..+++|+.-|.+.+||+.-
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46789999999999999999999999999876543322 1 112235689999999999999999999999864
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.00077 Score=61.13 Aligned_cols=172 Identities=13% Similarity=0.142 Sum_probs=89.4
Q ss_pred EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCC
Q 021648 91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 170 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 170 (309)
++.+....-....+.++|+++.++.++ ||.-.++.....+... .......++...+.+......+.|.++. +++
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~k--n~~ 98 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYK--NFK 98 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEE--TTE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc---cCceeEEEEecCccEEEEECCCeEEEEE--cCc
Confidence 344444555678999999999887754 8888887633222211 1111234455555544444567888873 221
Q ss_pred cCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC
Q 021648 171 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 250 (309)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg 250 (309)
......+.+ +..+-.+-+ |.+|...+.+ .|.+||..++..+.++.. ..+..+.|+++|.++|-.+.|
T Consensus 99 ~~~~k~i~~-----~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 99 NEVVKSIKL-----PFSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp E-TT----------SS-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--
T ss_pred cccceEEcC-----CcccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-
Confidence 111111111 111222222 8877777555 899999999999987753 235679999999999999866
Q ss_pred cEEEEECCCC-----------ceEEEeecCCCCCcEEEECCC
Q 021648 251 SVYAWSVRSG-----------KEVASWMSFDTEPPVIKWTPG 281 (309)
Q Consensus 251 ~i~vwd~~~~-----------~~~~~~~~~~~~v~~l~~~p~ 281 (309)
+++|++.... ..+......+..|.+.+|..+
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 5888876432 033443333567888888777
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00097 Score=60.24 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=106.4
Q ss_pred CceeeeeeccccceeEEEEecCCCEEEEEcCCCCC-ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE-EEecCCC
Q 021648 43 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF-ISGSLDR 120 (309)
Q Consensus 43 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d-~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~s~Dg 120 (309)
|...+.+......+..-+|++++..+++.+..... ..+.++|+++++....+. -.+.-..-.|+|||+.| .+...||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 33333333333344555778888876665443323 468999998876443332 22223355899998865 4666788
Q ss_pred cEEEe--eCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEE
Q 021648 121 TVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 198 (309)
Q Consensus 121 ~v~~W--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l 198 (309)
...+| |+...+... +. . ..+.. ..=.+||||+.+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt--~--------------------------------------~~gi~---~~Ps~spdG~~i 296 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LT--N--------------------------------------GFGIN---TSPSWSPDGSKI 296 (425)
T ss_pred CccEEEEcCCCCccee-cc--c--------------------------------------CCccc---cCccCCCCCCEE
Confidence 76666 333222100 00 0 00000 011589999998
Q ss_pred EEEeCC-C--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC-Cc--EEEEECCCCceEEEeecCCCC
Q 021648 199 LLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GS--VYAWSVRSGKEVASWMSFDTE 272 (309)
Q Consensus 199 ~~~~~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D-g~--i~vwd~~~~~~~~~~~~~~~~ 272 (309)
+-.++. | .|.+.|+..+.. ..+.... .+. ..-.|||||++|+-.+.. |. |.+.|+.++.....+ ..+..
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--~~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~ 371 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--GGN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYL 371 (425)
T ss_pred EEEeCCCCCcceEEECCCCCce-eEeeccC--CCC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-ccccc
Confidence 877653 3 466667665543 2222111 111 145799999999988754 44 677777665543322 22223
Q ss_pred CcEEEECCCeeEEEEc
Q 021648 273 PPVIKWTPGSLMFVTG 288 (309)
Q Consensus 273 v~~l~~~p~~~~l~s~ 288 (309)
...-.|.|+++.+...
T Consensus 372 ~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 372 NESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCCCcCCCCceEEEe
Confidence 3344567777655443
No 329
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.97 E-value=3e-05 Score=43.48 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=34.0
Q ss_pred ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee
Q 021648 89 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 126 (309)
Q Consensus 89 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd 126 (309)
+++..+..|...|.++.|.++++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999989999999999999996
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.94 E-value=0.02 Score=56.38 Aligned_cols=198 Identities=13% Similarity=0.223 Sum_probs=119.8
Q ss_pred cceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc------
Q 021648 12 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL------ 85 (309)
Q Consensus 12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~------ 85 (309)
+.|.++.|..+++.++.+..+|.|.+=|.+++. +.....-..+|.+++|+||.+.++.... .+++.+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccchh
Confidence 589999999999998889899999998887643 2222233457889999999987776642 233333221
Q ss_pred ---------cCCceE--------EEeeec---------------------ccCEEEEEecCCCCeEEEe----cCC-CcE
Q 021648 86 ---------HDNKYL--------RYFKGH---------------------HDRVVSLSLCSSKDCFISG----SLD-RTV 122 (309)
Q Consensus 86 ---------~~~~~~--------~~~~~h---------------------~~~v~~v~~~~~~~~l~s~----s~D-g~v 122 (309)
..++.+ -.|.|. .+.=+.|+|-.||.+|+.. ..+ +++
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 001110 012211 1112348899999988873 235 899
Q ss_pred EEeeCCCceeeeeee--ecCceeEEECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCC
Q 021648 123 LLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 196 (309)
Q Consensus 123 ~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~ 196 (309)
++||-+ +.....-. .........-|.|.++++.. ++.|.+|.-...+.+.+.+.-.. ....+..++++.++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~-de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL-DEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc-cccchheeeecCCCC
Confidence 999965 43322111 11123456667787777653 56788887433332322221111 112378899999999
Q ss_pred EEEE---EeCCCcEEEEECCCC
Q 021648 197 LMLL---TTMEGHIHVLDSFRG 215 (309)
Q Consensus 197 ~l~~---~~~dg~v~i~d~~~~ 215 (309)
.|++ ......|++|-....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ceeeeecccccceEEEEEecCe
Confidence 9988 444556999976543
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.0005 Score=64.76 Aligned_cols=107 Identities=12% Similarity=0.253 Sum_probs=79.3
Q ss_pred EEEeCCCCCEEEEee----CCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCC-CceeEEEEccCCce
Q 021648 16 SMDFHKSSSYLVTAS----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DESLRLLSLHDNKY 90 (309)
Q Consensus 16 ~i~~s~~~~~l~t~s----~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-d~~i~~~d~~~~~~ 90 (309)
-++|+|...++|.++ ..|+|-|| +++|++.+..... ..++.+||+|.. ++.+. || -+.+-+|.-...+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~--~vLa~--gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEE--FVLAQ--GWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHH--HHHhh--ccccceeEEEecCCcee
Confidence 457999999998887 47899998 5778765433221 124568887643 33332 33 36788888777666
Q ss_pred EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648 91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 128 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~ 128 (309)
......|+.+|..+.|+++|+.++|+..=|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66667799999999999999999999999999999754
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.016 Score=51.96 Aligned_cols=219 Identities=15% Similarity=0.141 Sum_probs=138.6
Q ss_pred EEEEeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648 15 SSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 93 (309)
Q Consensus 15 ~~i~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~ 93 (309)
..+..+++++ ..++...+..|.+.|..+.++++...... ....++++++++.++.+..+..++++.+.|-.+++.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3567788777 56666677999999988888777766554 356789999998888775432478899999888887766
Q ss_pred eeecccCEEEEEecCCCCeEEE-ecCCCcEEEeeCCCceeee-e----eeec-CceeEEECCCCcEEEEEEC----CEEE
Q 021648 94 FKGHHDRVVSLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQG-L----LRVQ-GRPAAAYDDQGLVFAVAFG----GYIR 162 (309)
Q Consensus 94 ~~~h~~~v~~v~~~~~~~~l~s-~s~Dg~v~~Wd~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~~~----~~i~ 162 (309)
...-..+ ..+++.|+++.+.. -..++.+.+.|........ . .... ........+++..+.+..+ +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 4433344 88999999995544 4578999999976665442 1 1111 1223455566654444332 4677
Q ss_pred EEECCCCCcCCceEE-EeCCCCCCCeEEEEccCCCEEEEE-eCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCC
Q 021648 163 MFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 239 (309)
Q Consensus 163 ~~d~~~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 239 (309)
..|.....- ... ...+.. ....+.++|+|+.+-.. ...+.|.+.|..+..+.............+..+++.+.
T Consensus 235 ~id~~~~~v---~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 235 KIDTATGNV---TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeCCCceE---EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 777654221 111 011111 34567899999987776 44589999998887776655432222223444555543
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.90 E-value=0.014 Score=51.29 Aligned_cols=271 Identities=13% Similarity=0.128 Sum_probs=114.5
Q ss_pred EEeCCCCCEEE-EeeCCCcEEEE--EcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEE
Q 021648 17 MDFHKSSSYLV-TASDDESIRLY--DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 93 (309)
Q Consensus 17 i~~s~~~~~l~-t~s~D~~v~iW--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~ 93 (309)
=+|.+||+.|+ .+..|+.-.+| |+.+++..+.-.+........+.++..+.+++.-. +..++..|+++.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEE
Confidence 35678887654 45557766666 77888877766654332334566777777766532 45789999999887666
Q ss_pred eeecccCEEEEEec--CCCCeEEEec---CC-------------------CcEEEeeCCCceeeeeeeecCc-eeEEECC
Q 021648 94 FKGHHDRVVSLSLC--SSKDCFISGS---LD-------------------RTVLLWDQRAEKCQGLLRVQGR-PAAAYDD 148 (309)
Q Consensus 94 ~~~h~~~v~~v~~~--~~~~~l~s~s---~D-------------------g~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~ 148 (309)
+.-..+.+-...|. .|+..++-.- .| ..|.--|+++++....+....- .-..++|
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 66666655444443 3444332211 11 1122223333332222221110 0112222
Q ss_pred -CCcEEEEEECC-----EEEEEECCCCCcCCceEEEeCCCCC--CCeEEEEccCCCEEEEEe-----CCCcEEEEECCCC
Q 021648 149 -QGLVFAVAFGG-----YIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTT-----MEGHIHVLDSFRG 215 (309)
Q Consensus 149 -~~~~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~v~~s~dg~~l~~~~-----~dg~v~i~d~~~~ 215 (309)
+..++.-+..| .-|||-++....... .+..+.. .+.---|+|||..+..-+ .+..|.-+|+.++
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~---~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK---KVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---E---ESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcce---eeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 23344433321 136675543221111 1111111 111123789998766422 2335677788877
Q ss_pred eEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC----------------cEEEEECCCCceEEEeecC----------
Q 021648 216 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG----------------SVYAWSVRSGKEVASWMSF---------- 269 (309)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg----------------~i~vwd~~~~~~~~~~~~~---------- 269 (309)
+....... ....-..-++||+.++-=+.|. -|+++++..++... +..|
T Consensus 275 ~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 275 ERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGD 348 (386)
T ss_dssp -EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTB
T ss_pred CceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCC
Confidence 65432222 1222345678998876545542 56788887765432 2122
Q ss_pred CC-CCcEEEECCCeeEEEEccce---EEEeeecC
Q 021648 270 DT-EPPVIKWTPGSLMFVTGSSE---LSFWIPDL 299 (309)
Q Consensus 270 ~~-~v~~l~~~p~~~~l~s~~~d---~~~~~~~~ 299 (309)
.. .-+...|+||++.++-.|.. ..++..++
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 11 24679999999987766642 55555443
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0034 Score=58.91 Aligned_cols=152 Identities=12% Similarity=0.186 Sum_probs=98.8
Q ss_pred ecCCCcceEEEEeCCC-------------CCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecC-----CCEE
Q 021648 7 FRDYNGRISSMDFHKS-------------SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-----PTTV 68 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~-------------~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~ 68 (309)
|..|.+.|.-..+.-+ |.+++|||.||+|.|-.+.+.+...++..+. ++..++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r-piksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR-PIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC-cceeEEeccchhhhhhhhe
Confidence 4568887776666544 9999999999999999988877776665543 5778888887 2345
Q ss_pred EEEcCCCCCceeEEEEccC--CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---c--
Q 021648 69 IYSSKNGWDESLRLLSLHD--NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---R-- 141 (309)
Q Consensus 69 ~~~s~~g~d~~i~~~d~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---~-- 141 (309)
+++ |.-+ +-++.-.- .+-...+..-.++|.++.|. |+++|=++ |--|+++|..+.+....+..+. +
T Consensus 133 v~G---G~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 133 VSG---GMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPE 205 (846)
T ss_pred eec---Ccce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcc
Confidence 544 3233 55554221 11111455567899999997 45555555 5557999988777665553322 1
Q ss_pred ---eeEEECCCCcEEEEEECCEEEEEECC
Q 021648 142 ---PAAAYDDQGLVFAVAFGGYIRMFDAR 167 (309)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~i~~~d~~ 167 (309)
+...+. +...+..|.+.+|++..++
T Consensus 206 ~fpphl~W~-~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQ-DEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred cCCCceEec-CCCeEEEecCCeEEEEEEe
Confidence 112222 3345667888899999887
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.02 Score=51.38 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=133.2
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC----
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---- 88 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~---- 88 (309)
+|+.++|+++..-|+.|-..|.|-||-....+.-. .....+.....+.+ + ...+..-.+-|+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~-----~----~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR-----F----SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc-----c----cccCCCcceEEehhhCCcc
Confidence 58899999998889999999999999765322111 00000000000000 0 000112223333221
Q ss_pred -----ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC---------c------eeEEECC
Q 021648 89 -----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------R------PAAAYDD 148 (309)
Q Consensus 89 -----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~---------~------~~~~~~~ 148 (309)
.+...+...+++|++++.+ |=.+++.|..+|.+.+-|+|.+..+....+.. . ..+.+..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1233445568899999986 44589999999999999999887665432222 0 1122334
Q ss_pred CC----cEEEEEECCEEEEEECCCCCcCCceEEE--eC-CCCCCCeEEE-EccC-----------------C---CEEEE
Q 021648 149 QG----LVFAVAFGGYIRMFDARKYEKGPFDIFS--VG-GDISDANVVK-FSND-----------------G---RLMLL 200 (309)
Q Consensus 149 ~~----~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~-~~~~~~~~v~-~s~d-----------------g---~~l~~ 200 (309)
++ .++.+...|.+.+|.+.-...+.+.+.. .. .+.+.+..+. |+.+ | ..++.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 43 2444445689999986422223333211 11 1223333322 3211 1 22455
Q ss_pred EeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE-----CCCCCEEEEEcCCCcEEEEECCCCceEEEeecCC----C
Q 021648 201 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-----SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD----T 271 (309)
Q Consensus 201 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----~ 271 (309)
...+..++++...+.+..+..... ...+..+.+ ...+..|++-..+|.|+++.+..-+.+....-.. .
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 566888999998877665543311 111223444 2357788888999999999999988887765422 2
Q ss_pred CCcEEEECCCeeEEEEcc-ceEEEee
Q 021648 272 EPPVIKWTPGSLMFVTGS-SELSFWI 296 (309)
Q Consensus 272 ~v~~l~~~p~~~~l~s~~-~d~~~~~ 296 (309)
......++++|..+.-.+ .+..++.
T Consensus 308 ~~~~ssis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred cccccEECCCCCEEEEeCcccEEEEE
Confidence 244577899998775554 4655553
No 336
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.73 E-value=0.0012 Score=62.62 Aligned_cols=172 Identities=17% Similarity=0.290 Sum_probs=112.2
Q ss_pred CCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCC-cEEE
Q 021648 76 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVFA 154 (309)
Q Consensus 76 ~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (309)
.-..+-.+|+.+.+..+...--...|.-+ ..+++.+.+|...|+|.+-|+++-+.++.+..+......++-.| .+++
T Consensus 155 ~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLit 232 (1118)
T KOG1275|consen 155 LQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLIT 232 (1118)
T ss_pred hhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEE
Confidence 34567778888877665554333344444 45678999999999999999998888887765544444444444 4556
Q ss_pred EEE---------CCEEEEEECCCCCc-CCceEEEeCCCCCCCeEEEEccCC-CEEEEEeCCCcEEEEECCC-CeE-eEEe
Q 021648 155 VAF---------GGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR-GTL-LSTY 221 (309)
Q Consensus 155 ~~~---------~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~dg~v~i~d~~~-~~~-~~~~ 221 (309)
+|. |..|++||+|.++. .++.+ + ..-.-+.|.|.- ..++..+..|...+-|..+ ++. ...+
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-----~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~ 306 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-----P-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK 306 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhccCCccc-----c-cCchhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence 654 46789999997652 11111 1 011234555543 4567788888988888322 222 2222
Q ss_pred eecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648 222 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 222 ~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd 256 (309)
...+. ...+...++|++|+.+|-|..+|.|.+|-
T Consensus 307 ~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 22221 23367889999999999999999999998
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0068 Score=57.45 Aligned_cols=193 Identities=16% Similarity=0.226 Sum_probs=110.7
Q ss_pred EEEEecCCCEEEEEcCCCCCceeEEEEccCCce-EEEeeecccC-EEEEEecCCCCeEEEecCCCc-----EEEeeCCC-
Q 021648 58 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDR-VVSLSLCSSKDCFISGSLDRT-----VLLWDQRA- 129 (309)
Q Consensus 58 ~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~-~~~~~~h~~~-v~~v~~~~~~~~l~s~s~Dg~-----v~~Wd~~~- 129 (309)
.-|+++.+..++.++. ++ +||-++++-. +..++.+... |..+....+.++|++-+.|+. +++||++.
T Consensus 28 isc~~s~~~~vvigt~---~G--~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTA---DG--RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eeEEcCCCceEEEeec---cc--cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4466777777777764 44 4455545443 3777888777 444444444468888887764 89999753
Q ss_pred -----ceeeeeeee-----c--C--ceeEEECCCCcEEEEEE-CCEEEEEE--CCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648 130 -----EKCQGLLRV-----Q--G--RPAAAYDDQGLVFAVAF-GGYIRMFD--ARKYEKGPFDIFSVGGDISDANVVKFS 192 (309)
Q Consensus 130 -----~~~~~~~~~-----~--~--~~~~~~~~~~~~~~~~~-~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~v~~s 192 (309)
+++....+. + . .+..+.+.+-..+++|+ +|.|..+. +... ++. ...-......+++.+++-
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-rgs-r~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-RGS-RQDYSHRGKEPITGLALR 180 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-ccc-ceeeeccCCCCceeeEEe
Confidence 233311221 1 1 12334445556677775 67888774 2211 111 122222234689999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeE-eEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648 193 NDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 193 ~dg~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
.+++.++-...-.+|.+|.+....+ ..... .+.....+.+|++....++.|+. ..+++|+.....
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 9998855555566788888763331 22222 23344556677776554555554 459999986543
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.72 E-value=0.04 Score=51.18 Aligned_cols=228 Identities=19% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeecccc------c-ee-EEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY------G-VD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 94 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~------~-v~-~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~ 94 (309)
+..+..++.|+.|.-.|..+|+.+..+..... . +. .++.. ++..++.++. ++.+..+|.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence 34566677889999999999988766543321 0 00 01111 2245665543 789999999999988877
Q ss_pred eecccC--EEEEEecC--CCCeEEEec---------CCCcEEEeeCCCceeeeeeeecCc--------------------
Q 021648 95 KGHHDR--VVSLSLCS--SKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGR-------------------- 141 (309)
Q Consensus 95 ~~h~~~--v~~v~~~~--~~~~l~s~s---------~Dg~v~~Wd~~~~~~~~~~~~~~~-------------------- 141 (309)
...... -..+.-+| .+..++.++ .++.+...|.++++..........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 543221 00111111 123444443 468888889988877655433110
Q ss_pred ---eeEEECC-CCcEEEEEECC------------------EEEEEECCCCCcCCceEEEeC--CCC-------CCCeEEE
Q 021648 142 ---PAAAYDD-QGLVFAVAFGG------------------YIRMFDARKYEKGPFDIFSVG--GDI-------SDANVVK 190 (309)
Q Consensus 142 ---~~~~~~~-~~~~~~~~~~~------------------~i~~~d~~~~~~~~~~~~~~~--~~~-------~~~~~v~ 190 (309)
....+++ .+.++....++ .+.-+|..+.+. ..... .+. .......
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~----~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV----KWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE----EEEeeCCCCCCcccccCCCCeEEe
Confidence 0122232 23444443332 566667655432 11111 000 0000001
Q ss_pred E-ccCCC---EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE------------------cC
Q 021648 191 F-SNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG------------------SG 248 (309)
Q Consensus 191 ~-s~dg~---~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~------------------s~ 248 (309)
. .-+|. .++.++.+|.++.+|..+|+.+=...... ..++.+| ..+..+ ..
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~ 364 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPG 364 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC--ceEEEccccccccCcccccCCCCCCC
Confidence 1 12343 57778889999999999999876544210 1123444 223222 24
Q ss_pred CCcEEEEECCCCceEEEe
Q 021648 249 DGSVYAWSVRSGKEVASW 266 (309)
Q Consensus 249 Dg~i~vwd~~~~~~~~~~ 266 (309)
+|.+.-.|+.+++.+-+.
T Consensus 365 ~G~l~AlD~~tG~~~W~~ 382 (488)
T cd00216 365 KGGLAALDPKTGKVVWEK 382 (488)
T ss_pred ceEEEEEeCCCCcEeeEe
Confidence 678888999888876554
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.69 E-value=0.023 Score=51.70 Aligned_cols=224 Identities=13% Similarity=0.142 Sum_probs=111.2
Q ss_pred CCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEE-EccC
Q 021648 9 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL-SLHD 87 (309)
Q Consensus 9 ~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~-d~~~ 87 (309)
...-....++++|+|+.++. ..||...|+......... .+ .....+|.+.+.+.+.-+ ..+|+++ +++.
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--~G---~g~~~vw~~~n~yAv~~~----~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--FG---SGLSFVWSSRNRYAVLES----SSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--EE---E-SEEEE-TSSEEEEE-T----TS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--cC---ceeEEEEecCccEEEEEC----CCeEEEEEcCcc
Confidence 34445779999999998877 568888888844332222 11 234567777554433322 4678885 4433
Q ss_pred CceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECC
Q 021648 88 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR 167 (309)
Q Consensus 88 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 167 (309)
.. ++.++-. ..+..+ .+ |..|...+.+ .|.+||.++++.+..+.......+..++++.+++...+..+.+++..
T Consensus 100 ~~-~k~i~~~-~~~~~I--f~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 100 EV-VKSIKLP-FSVEKI--FG-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp -T-T-----S-S-EEEE--E--SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred cc-ceEEcCC-cccceE--Ec-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 22 2222211 122332 22 7777766644 89999999999888777654445677888888888888888888643
Q ss_pred CC------CcC---CceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC
Q 021648 168 KY------EKG---PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 238 (309)
Q Consensus 168 ~~------~~~---~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp 238 (309)
.. +.+ .+.... .....|.+.++..| .++..+.. +++- +..|+.-. +.. -..+..-+.+.|
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~-i~~---ld~~~yllgy~~ 242 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGI-IAH---LDKPLYLLGYLP 242 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEE-EEE----SS--EEEEEET
T ss_pred chhcccccccCchhceEEEE--EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcce-EEE---cCCceEEEEEEc
Confidence 21 001 111111 11235666777655 55555555 6664 33343221 111 123445567777
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 021648 239 EGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
+.+.+.....|+.+..+.+..
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--H
T ss_pred cCCEEEEEECCCCEEEEEECH
Confidence 777888888888888777643
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.58 E-value=0.056 Score=49.00 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=121.5
Q ss_pred eEEEEeCCCCCEEEEe-eCCC----cEEEEEcCCCceeeee-eccccceeEEEEecCCCEEEEEcCCCC--------Cce
Q 021648 14 ISSMDFHKSSSYLVTA-SDDE----SIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW--------DES 79 (309)
Q Consensus 14 V~~i~~s~~~~~l~t~-s~D~----~v~iWd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~g~--------d~~ 79 (309)
+...+++|||+++|-+ +..| ++++.|+.+|+.+... .... ...++|.++++.+++...+.. ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999987633 3333 5999999999766432 2221 123899999998887754331 456
Q ss_pred eEEEEccCCce--EEEeeecccC--EEEEEecCCCCeEEEe-cCC---CcEEEeeCCCc----eeeeeeee--cCceeEE
Q 021648 80 LRLLSLHDNKY--LRYFKGHHDR--VVSLSLCSSKDCFISG-SLD---RTVLLWDQRAE----KCQGLLRV--QGRPAAA 145 (309)
Q Consensus 80 i~~~d~~~~~~--~~~~~~h~~~--v~~v~~~~~~~~l~s~-s~D---g~v~~Wd~~~~----~~~~~~~~--~~~~~~~ 145 (309)
|..|.+.+... ...+...... ...+..++|+++++.. ... ..+.+-|...+ .....+.. .......
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888876543 3555554443 5678889999976533 322 34566676653 11111211 1111111
Q ss_pred ECCCCcEEEEEE----CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEE-EeCCC--cEEEEECCCCeEe
Q 021648 146 YDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL-TTMEG--HIHVLDSFRGTLL 218 (309)
Q Consensus 146 ~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~-~~~dg--~v~i~d~~~~~~~ 218 (309)
....+.++..+. .+.|...++............+ .+...+....++..+..|+. ...++ .|+++|+..+...
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 112333333332 2456666665443211111111 11222233334444444444 34444 6888888734444
Q ss_pred EEeeecCCCCCccceEEECCCCCEE-EEEcC---CCcEEEEECCCCce
Q 021648 219 STYNVKPVSRNSTLEASFSPEGMFV-ISGSG---DGSVYAWSVRSGKE 262 (309)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~sp~g~~l-~s~s~---Dg~i~vwd~~~~~~ 262 (309)
...... ..+.+..+...+++..+ ++.+. =.+++.||+.+++.
T Consensus 363 ~~~~~p--~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 363 REIPLP--EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEESS--SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eeecCC--cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 433322 12333344444544333 22222 24788888888764
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.038 Score=50.11 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=69.7
Q ss_pred CcceEEEEeCCCCCEEEEeeC---C-CcEEEEEcCCCceeeeee--ccccceeEEEEecCCCEEEEEcCCCCCceeEEEE
Q 021648 11 NGRISSMDFHKSSSYLVTASD---D-ESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 84 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~---D-~~v~iWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d 84 (309)
...+..-+|+|++..++-.+. . ..+.++|+++++....+. ++. ..-.|+|++++++.+........|.+.|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 345666789999987655432 2 358888998776544433 332 3457899999988877654466777888
Q ss_pred ccCCceEEEeeecccCEEEEEecCCCCeEEEec-CCCcEEE
Q 021648 85 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLL 124 (309)
Q Consensus 85 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~ 124 (309)
+.+++..+ +..-.+.-..=.|+|||+.++=.+ ..|.-.+
T Consensus 269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcce
Confidence 87776333 443333334567899998766543 3443333
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.52 E-value=0.039 Score=53.36 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=81.5
Q ss_pred CceeEEEEccCCceEEEeeecccC-EEEEEecCCC-------CeEEEecCCCcEEEeeCCCce--eeee--eeec---Cc
Q 021648 77 DESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSSK-------DCFISGSLDRTVLLWDQRAEK--CQGL--LRVQ---GR 141 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h~~~-v~~v~~~~~~-------~~l~s~s~Dg~v~~Wd~~~~~--~~~~--~~~~---~~ 141 (309)
...+.-.|++.|+.+...+-|... |..+ .|+. .....|-.+..+..||+|-.. ++.. .... ..
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 567888899999999988887754 5544 4532 234566668899999998643 2211 0111 11
Q ss_pred eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEEC
Q 021648 142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 212 (309)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~ 212 (309)
.+.+-..+|.++.++.+|.||+||-- ..+-+..+. +-..+|..|..+.||+++++.+ +..+.+++.
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP---GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC---CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 23444566777777788999999932 121111111 2235789999999999987665 445556663
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.068 Score=48.37 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=98.6
Q ss_pred eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee----eecCceeE-----EECCC
Q 021648 79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RVQGRPAA-----AYDDQ 149 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~----~~~~~~~~-----~~~~~ 149 (309)
.|++|+... +.+..+.--.+.+.++.|..+. .|+.-..||+++++|+.... ...+ ........ .+...
T Consensus 62 ~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCC-CEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 477777644 3444444333899999998754 56666689999999985333 1111 00010001 11123
Q ss_pred CcEEEEEECCEEEEEECCCCCcC-C---c-eEEE----eCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEE
Q 021648 150 GLVFAVAFGGYIRMFDARKYEKG-P---F-DIFS----VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 220 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~~~~~-~---~-~~~~----~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~ 220 (309)
| ++....++.+.+.+ +...+ . . .+.. ............++.+....+....++.+++.+......+
T Consensus 139 G-ivvLt~~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i-- 213 (410)
T PF04841_consen 139 G-IVVLTGNNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQI-- 213 (410)
T ss_pred C-EEEECCCCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccc--
Confidence 3 33333344443332 21111 0 0 0000 0001111111345556666666666666765553321110
Q ss_pred eeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecC-CCCCcEEEECC
Q 021648 221 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTP 280 (309)
Q Consensus 221 ~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~~p 280 (309)
...+++..++.||+|+++|.-..+|.+.|.+..-.+...++... ...+..++|--
T Consensus 214 -----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 214 -----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred -----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 12356788999999999999999999999987666555554333 23444555543
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.50 E-value=4.9e-05 Score=69.13 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=121.4
Q ss_pred ceEEEEeCC--CCCEEEEeeCCCcEEEEEcCCCc--eeeeeeccccceeEEEEecCCCEEEEEcCC--CCCceeEEEEcc
Q 021648 13 RISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH 86 (309)
Q Consensus 13 ~V~~i~~s~--~~~~l~t~s~D~~v~iWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--g~d~~i~~~d~~ 86 (309)
.+.|+++.- +.-+++.|..+|.|-+=.+.... ......++...+++++|.+-...+++++.. .-|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456666654 33578899999999887665321 123345555668888888754444433222 126689999998
Q ss_pred CC--c--eEEEeee-cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCcee-eeeeeecCceeEEECC-CCcEEEEEECC
Q 021648 87 DN--K--YLRYFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDD-QGLVFAVAFGG 159 (309)
Q Consensus 87 ~~--~--~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (309)
++ . .-..|.+ -.....+++|..+.+.+++|...+.+.+.|++...- ...+..+.+.....+| .+.+++...++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg 217 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG 217 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC
Confidence 76 2 1222333 445667888888899999999999999999874311 1111111222334444 55677777899
Q ss_pred EEEEEE-CCCCCcCCceEEEeC--CCCCCCeEEEEccCC--CEEEEEeCCCcEEEEECC
Q 021648 160 YIRMFD-ARKYEKGPFDIFSVG--GDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSF 213 (309)
Q Consensus 160 ~i~~~d-~~~~~~~~~~~~~~~--~~~~~~~~v~~s~dg--~~l~~~~~dg~v~i~d~~ 213 (309)
.|-+|| .++.+.+ +...... .....+..++++|-. ...+..-..++|+++|+.
T Consensus 218 ~iAiwD~~rnienp-l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 218 DIAIWDTYRNIENP-LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeccchhhhccH-HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999 5554432 1111110 111246778888854 333334456899999864
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.00046 Score=63.60 Aligned_cols=112 Identities=14% Similarity=0.256 Sum_probs=83.2
Q ss_pred CeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce---
Q 021648 186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE--- 262 (309)
Q Consensus 186 ~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~--- 262 (309)
+..-+++..+++++.|+.-|.+++|+...+..+.... . ...+.+..+..|++..++|.|+..|.|.|+-+....+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-E-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-c-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3444678889999999999999999987766554221 1 1234455678999999999999999999999876432
Q ss_pred --EEEe-ecCCCCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 263 --VASW-MSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 263 --~~~~-~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
+..+ ..|+..|++++|++|+..+-+|.+-.++-...|
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 1111 247889999999999999999988755544333
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.45 E-value=0.05 Score=45.42 Aligned_cols=213 Identities=12% Similarity=0.180 Sum_probs=101.3
Q ss_pred eEecCCCcceEEEEeCCCCCE-EEEeeCCCcEEEEEcCCCceeeeeeccc-cceeEEEEecCCCEEEEEcCCCCCceeEE
Q 021648 5 MSFRDYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 5 ~~~~~h~~~V~~i~~s~~~~~-l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~g~d~~i~~ 82 (309)
+.+.+-...++.|+|+|+.+. ++.....+.|-..+. +|+.++.+.... .-...+++..++.+++..- -++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E---r~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE---RDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET---TTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc---CCCcEEE
Confidence 455666678999999998664 555555666666665 578887775433 2256677766665554432 1567888
Q ss_pred EEccCCc---eE---EEee-----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCc
Q 021648 83 LSLHDNK---YL---RYFK-----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 151 (309)
Q Consensus 83 ~d~~~~~---~~---~~~~-----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (309)
+++.... .. ..+. .+...+-+++|.+.++.|..+-.....+++.+..-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-------------------- 150 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-------------------- 150 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------------------
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc--------------------
Confidence 8773321 11 1111 233457778888876666666444444444321100
Q ss_pred EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccC-CCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC--
Q 021648 152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-- 228 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-- 228 (309)
.+..+.+.+..... .......+...+++.|. |++++....+..+..+| .+|+.+..+.......
T Consensus 151 -----~~~~~~~~~~~~~~-------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 151 -----GGFDLFVSDDQDLD-------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp ------SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred -----Cccceeeccccccc-------cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence 00111111100000 00111234677888875 56777777788888898 5677777665432111
Q ss_pred ----CccceEEECCCCCEEEEEcCCCcEEEE
Q 021648 229 ----NSTLEASFSPEGMFVISGSGDGSVYAW 255 (309)
Q Consensus 229 ----~~~~~~~~sp~g~~l~s~s~Dg~i~vw 255 (309)
...-.++|.|+|+..++ |+-...+++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 11235899999855444 455555554
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.41 E-value=0.056 Score=47.20 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=77.4
Q ss_pred CcEEEeeCCCc-----eee--eeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEc
Q 021648 120 RTVLLWDQRAE-----KCQ--GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 192 (309)
Q Consensus 120 g~v~~Wd~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s 192 (309)
|.+.++++... +.. ......+.......-.+. +.++.++.|.+|++...+ .+. ...........++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~--~l~--~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSK--TLL--KKAFYDSPFYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTS--SEE--EEEEE-BSSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcc--cch--hhheecceEEEEEEe
Confidence 88999998773 221 111222222222222444 777788999999987644 121 111111223455555
Q ss_pred cCCCEEEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 193 NDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 193 ~dg~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
..+.+++.|..-+.+.++.... +..+...... .....+.++.|-++++.++.+..+|.+.++...
T Consensus 137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 5677999998888888764322 3323332221 223456778887777899999999999999986
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.11 Score=46.55 Aligned_cols=261 Identities=15% Similarity=0.119 Sum_probs=152.8
Q ss_pred eEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE
Q 021648 14 ISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 92 (309)
Q Consensus 14 V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~ 92 (309)
...+...|++..+ ++-..-..+..-+...................++.++.++.++.... .++.|.+.|..+.+.+.
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLG 110 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecC--CCCeEEEEcCcccceee
Confidence 3456677777433 33322224444444311111212222123345677777776665542 26789999977766655
Q ss_pred EeeecccCEEEEEecCCCCeEEEecC---CCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEE--CCEEEEEEC
Q 021648 93 YFKGHHDRVVSLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF--GGYIRMFDA 166 (309)
Q Consensus 93 ~~~~h~~~v~~v~~~~~~~~l~s~s~---Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~i~~~d~ 166 (309)
...--. ....+++.++++.+..+.. ++++.+-|..+++.......... ....+.+.+..+.... ++.+.++|.
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 443222 5678899999876554433 78888888888777666444322 3466777776444443 789999996
Q ss_pred CCCCcCC-ceEEEeCCCCCCCeEEEEccCCCEEEEE-eCC--CcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCE
Q 021648 167 RKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLT-TME--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 242 (309)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~ 242 (309)
....... ...... ........+.++|+|..+-.. ..+ +.+...|..++.....-... ... ....+.++|+|++
T Consensus 190 ~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 190 SGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKA 266 (381)
T ss_pred CCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCE
Confidence 5432110 000001 111233567899999854443 333 69999999887766541111 111 3346899999999
Q ss_pred EEEE-cCCCcEEEEECCCCceEEEeecCCC---CCcEEEECC
Q 021648 243 VISG-SGDGSVYAWSVRSGKEVASWMSFDT---EPPVIKWTP 280 (309)
Q Consensus 243 l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~~p 280 (309)
+... +..+.+.+-|..+.+.......... .+..+++.+
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9998 4458999999988777665543332 244444444
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0022 Score=59.35 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=80.5
Q ss_pred CeEEEEccCCCEEEEEeCCCcEEEEECCCCe---EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCc-
Q 021648 186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK- 261 (309)
Q Consensus 186 ~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~- 261 (309)
+..++.|++.+++|+|+..|.|.++.+..+. ++..-.....|...|.+++|++|+..+++|..-|.|..-.+.+..
T Consensus 79 ~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~ 158 (726)
T KOG3621|consen 79 TCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA 158 (726)
T ss_pred EEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh
Confidence 3456789999999999999999999876522 111111112245778999999999999999999999998887621
Q ss_pred ---eEEEeecCCCCCcEEEECCCeeEEEEccceEEEeeecCCCc
Q 021648 262 ---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 302 (309)
Q Consensus 262 ---~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~~~ 302 (309)
...++....++|..|.+ -++.+|++...-+.++..+.+..
T Consensus 159 ~~~~~q~il~~ds~IVQlD~-~q~~LLVStl~r~~Lc~tE~eti 201 (726)
T KOG3621|consen 159 FLSKSQEILSEDSEIVQLDY-LQSYLLVSTLTRCILCQTEAETI 201 (726)
T ss_pred hccccceeeccCcceEEeec-ccceehHhhhhhhheeecchhHH
Confidence 23344455666766664 35667777766666666655443
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.25 E-value=0.089 Score=43.95 Aligned_cols=197 Identities=12% Similarity=0.147 Sum_probs=100.2
Q ss_pred EeeecccCEEEEEecCCCCe-EEEecCCCcEEEeeCCCceeeeeeeecCc---eeEEECCCCcEEEEE-ECCEEEEEECC
Q 021648 93 YFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVA-FGGYIRMFDAR 167 (309)
Q Consensus 93 ~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~i~~~d~~ 167 (309)
.+.+-.+.+.++.|.|+.+. ++.....+.|...|. +++.+..+...+. -...+..++.++... .++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34456667999999998664 555566777777775 4666666655441 234555555544433 26788888874
Q ss_pred CCC----cCCceEEEeCC---CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC---CeEeEEeee-----cCCCCCccc
Q 021648 168 KYE----KGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLSTYNV-----KPVSRNSTL 232 (309)
Q Consensus 168 ~~~----~~~~~~~~~~~---~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~---~~~~~~~~~-----~~~~~~~~~ 232 (309)
... ...+..+.+.. .......++++|.+..|..+-......++.... ...+..... .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 11112222221 234578899999877766666665555555432 222211110 011223456
Q ss_pred eEEECCC-CCEEEEEcCCCcEEEEECCCCceEEEeecCC---------CCCcEEEECCCeeEEEEccce
Q 021648 233 EASFSPE-GMFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 233 ~~~~sp~-g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~~l~s~~~d 291 (309)
.+.++|. |.+++-......+-++| .+|+.+..+.--. .+.=.|+|.|+|++.++.-..
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 7889996 56666677778899999 5777666543221 134459999999888776443
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.18 E-value=0.15 Score=45.16 Aligned_cols=226 Identities=12% Similarity=0.172 Sum_probs=114.1
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeeccc-----------------cceeEEEEecCCCEEEEEcC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----------------YGVDLVCFTSHPTTVIYSSK 73 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~s~ 73 (309)
...+....|||+|+.+|-. .|+.|-+++..++...+.-.... ..-..+.|+|+++++++...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 4578889999999999888 47899999987775543222110 01245778999988876542
Q ss_pred CCC-------------------------------Cc--eeEEEEccCCceEEE--e---eecccCEEEEEecCCCCeEE-
Q 021648 74 NGW-------------------------------DE--SLRLLSLHDNKYLRY--F---KGHHDRVVSLSLCSSKDCFI- 114 (309)
Q Consensus 74 ~g~-------------------------------d~--~i~~~d~~~~~~~~~--~---~~h~~~v~~v~~~~~~~~l~- 114 (309)
+.- +. .+.++|+++++.... . ..-..-+..+.|.++++.|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 210 11 334556666654221 1 12234577888888887333
Q ss_pred -EecCCC---cEEEeeCCCceeeeeeeecC------ceeEEE--CCCCcEEE-EEECCE--EEEEECCCCCcCCceEEEe
Q 021648 115 -SGSLDR---TVLLWDQRAEKCQGLLRVQG------RPAAAY--DDQGLVFA-VAFGGY--IRMFDARKYEKGPFDIFSV 179 (309)
Q Consensus 115 -s~s~Dg---~v~~Wd~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~-~~~~~~--i~~~d~~~~~~~~~~~~~~ 179 (309)
..+.+. .+.+.|.+++.+........ .....+ .+...++- .-.+|. |.+++..... ...+
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~~l 275 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PRQL 275 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EEES
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----eecc
Confidence 223333 34455666554433222111 112222 23333333 334554 4444443221 1122
Q ss_pred CCCCCCC-eEEEEccCCCEEE-EEeC----CCcEEEEECC-CCeEeEEeeecCCCCCccceEEECCCCCEEEEE
Q 021648 180 GGDISDA-NVVKFSNDGRLML-LTTM----EGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 180 ~~~~~~~-~~v~~s~dg~~l~-~~~~----dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~ 246 (309)
....-.| ..+.++++++.+. ++.. ..+++..++. .+.. ..+.... .....+.|||+|++++-.
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~---~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCED---GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTS---STTEEEEE-TTSSEEEEE
T ss_pred ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCC---CCceEEEECCCCCEEEEE
Confidence 2222334 3467788876654 3433 2356666666 4443 3333211 111478999999988654
No 352
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.17 E-value=0.11 Score=43.44 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=110.5
Q ss_pred ccceEecCCCcc-eEEEEeCCCCCEEEEeeCCC--cEEEEEcCCCceeeeeecc-ccceeEEEEecCCCEEEEEcCCCCC
Q 021648 2 EVGMSFRDYNGR-ISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWD 77 (309)
Q Consensus 2 ~~~~~~~~h~~~-V~~i~~s~~~~~l~t~s~D~--~v~iWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d 77 (309)
+++.++...... -..+.|..+|.++-|.|.-| .|+.+|+.+|+.++...-. .+--..++...+ .++.-. -.+
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT--Wk~ 109 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT--WKE 109 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE--SSS
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE--ecC
Confidence 344555432333 34788878888888888766 8999999999877554332 222333444432 333222 227
Q ss_pred ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEE
Q 021648 78 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 157 (309)
Q Consensus 78 ~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (309)
+...+||.++-+.+..+. ..+.=+.++ .|++.|+.+.....+.++|+++-+....+.+. .
T Consensus 110 ~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-----------------~ 169 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-----------------D 169 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-----------------E
T ss_pred CeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-----------------E
Confidence 789999999888888775 446678887 45666666655667888887665443333221 1
Q ss_pred CCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC-------C---
Q 021648 158 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------S--- 227 (309)
Q Consensus 158 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-------~--- 227 (309)
++. + ...++.+.+- +|...|---....|...|+.+|.+...+..... .
T Consensus 170 ~g~------------p---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 170 NGR------------P---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp TTE------------E------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred CCE------------E---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 110 0 0112222222 566666666667777888888888876643211 0
Q ss_pred --CCccceEEECCCC-CEEEEE
Q 021648 228 --RNSTLEASFSPEG-MFVISG 246 (309)
Q Consensus 228 --~~~~~~~~~sp~g-~~l~s~ 246 (309)
......+||.|.+ ++++||
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEEe
Confidence 1223468998865 455555
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.13 E-value=0.00019 Score=65.39 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=111.3
Q ss_pred CEEEEEecCCCC--eEEEecCCCcEEEeeCCCceeee-e-eeecCcee--EEECC-CCcEEEEEE-----CCEEEEEECC
Q 021648 100 RVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQG-L-LRVQGRPA--AAYDD-QGLVFAVAF-----GGYIRMFDAR 167 (309)
Q Consensus 100 ~v~~v~~~~~~~--~l~s~s~Dg~v~~Wd~~~~~~~~-~-~~~~~~~~--~~~~~-~~~~~~~~~-----~~~i~~~d~~ 167 (309)
.+.+++...+.+ .++.|..+|.|-+=..+...-.. . .......+ .++.+ +...++++. +..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456666655433 67788889999887766443321 1 11111111 22222 234555554 4689999987
Q ss_pred CCCcCCceEEEeC-CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCe-EeEEeeecCCCCCccceEEECC-CCCEEE
Q 021648 168 KYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSP-EGMFVI 244 (309)
Q Consensus 168 ~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~sp-~g~~l~ 244 (309)
..-..++.-..+. +...+.+++|+-.+.+++.+|...+.++++|++... ....+. +..+..+...| .+.|++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccceecCCCCCcee
Confidence 6533333322222 244566788888999999999999999999987322 111222 12333466777 677877
Q ss_pred EEcCCCcEEEEEC-CCCc-eEEEee----cCCCCCcEEEECCCee-EEEEccce-EEEeeec
Q 021648 245 SGSGDGSVYAWSV-RSGK-EVASWM----SFDTEPPVIKWTPGSL-MFVTGSSE-LSFWIPD 298 (309)
Q Consensus 245 s~s~Dg~i~vwd~-~~~~-~~~~~~----~~~~~v~~l~~~p~~~-~l~s~~~d-~~~~~~~ 298 (309)
+-+ ||.|-+||. .+-+ ++..+. ....++..++|.|... ++++-..| ..+..-+
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 766 999999994 2211 222221 1223588999999754 44444444 3443333
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.029 Score=40.19 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=60.5
Q ss_pred eEEEEeC---CCC-CEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCc
Q 021648 14 ISSMDFH---KSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 89 (309)
Q Consensus 14 V~~i~~s---~~~-~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~ 89 (309)
|+++++. -|| +-|+.||.|..||+|+-+ +.+..+.... .+..++-... ..++++.. +++|.+|+-. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~---NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG-GRFAYALA---NGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC-CEEEEEec---CCEEEEEeCc--c
Confidence 5666654 343 579999999999999854 4555554433 3555555444 45666654 5678888642 2
Q ss_pred eEEEeeecccCEEEEEecC---CCC-eEEEecCCCcEE
Q 021648 90 YLRYFKGHHDRVVSLSLCS---SKD-CFISGSLDRTVL 123 (309)
Q Consensus 90 ~~~~~~~h~~~v~~v~~~~---~~~-~l~s~s~Dg~v~ 123 (309)
.++..+. +..+.++.+.. ||. .|++|=.+|.|-
T Consensus 73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3344432 22366665543 332 688887777764
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.10 E-value=0.14 Score=43.46 Aligned_cols=229 Identities=11% Similarity=0.154 Sum_probs=116.9
Q ss_pred CCCCCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe----
Q 021648 20 HKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF---- 94 (309)
Q Consensus 20 s~~~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~---- 94 (309)
...++.|+.|..|| +.+++... ....+..... .|..+...+.-+.++.-+ |+.+.++++..-......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS--SITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecc--eEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccc
Confidence 34578899998888 88888832 2222222222 277777777777666655 678999998653322210
Q ss_pred ----------eecccCEEEEE--ecCCCCeEEEecCCCcEEEeeCCCc-----eeeeeeeecCcee-EEECCCCcEEEEE
Q 021648 95 ----------KGHHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLLRVQGRPA-AAYDDQGLVFAVA 156 (309)
Q Consensus 95 ----------~~h~~~v~~v~--~~~~~~~l~s~s~Dg~v~~Wd~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~ 156 (309)
......+...+ -...+...+.....++|.+|..... +....+.++..+. ..+. +..++.+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 01122233333 1123334444445668888876543 2223333333222 2222 3445555
Q ss_pred ECCEEEEEECCCCCcCCceEEEeCC----------CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCC
Q 021648 157 FGGYIRMFDARKYEKGPFDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 226 (309)
Q Consensus 157 ~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 226 (309)
..+...+.|+.+.... .+..... ...++..+..+ ++++|++. |..-...| ..|+....... .
T Consensus 155 ~~~~f~~idl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i--~ 226 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPS--ELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTI--Q 226 (275)
T ss_pred eCCceEEEecCCCCce--EEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEE--E
Confidence 5666777777643321 1221111 11223333333 35666543 22222333 33443331111 0
Q ss_pred CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeec
Q 021648 227 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS 268 (309)
Q Consensus 227 ~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 268 (309)
-...+..+++. ..||+..+.++ |.||++.+++.+.++..
T Consensus 227 W~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 227 WSSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIPL 265 (275)
T ss_pred cCCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEEC
Confidence 11233445553 34887777655 99999999998887753
No 356
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0031 Score=61.06 Aligned_cols=111 Identities=18% Similarity=0.291 Sum_probs=77.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648 188 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 188 ~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
.++..-.+..++.+++.|+|-.+|... ++ ..+.-......++.+++|+.||++++.|-.+|.|.+||+.+++....+.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~-nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTG-NL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhc-cc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 333333566788899999999888653 21 1111111234678899999999999999999999999999998888887
Q ss_pred cCCCCCcEEE---ECCCeeEEEEccceEEEeeecCC
Q 021648 268 SFDTEPPVIK---WTPGSLMFVTGSSELSFWIPDLS 300 (309)
Q Consensus 268 ~~~~~v~~l~---~~p~~~~l~s~~~d~~~~~~~~~ 300 (309)
-|.++.+.+- +..++..+.++.....+|.-...
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~n 205 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVFN 205 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCceEEEEec
Confidence 7776665543 44455567776666777755433
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.01 E-value=0.15 Score=42.18 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=84.8
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 101 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v 101 (309)
..+++-||.-+.++--|..+|+.+..-. +.. +.+-++. -+++++.+.- .+.+.+.+.++|+..+.+..-. .|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R--iE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~-~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR--IECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILE-TV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce--eeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehh-hh
Confidence 3578889999999999999998875422 222 2222221 2456776653 5678888999997777665432 22
Q ss_pred EE-EEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee--EEECC-CCcEEEEEECCEE
Q 021648 102 VS-LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDD-QGLVFAVAFGGYI 161 (309)
Q Consensus 102 ~~-v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~i 161 (309)
.. ....+++..+..++.|++...-|+++..++...+..+... .+..+ ++.++++...|.+
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 22 2335678899999999999999999988876665544322 12223 4445555544443
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.047 Score=49.41 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=81.2
Q ss_pred CceeEEEEccCCceEEEeeecccCEEEEEecCCCCe-------EEEecCCCcEEEeeCCCceeeeeeeecC--------c
Q 021648 77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-------FISGSLDRTVLLWDQRAEKCQGLLRVQG--------R 141 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~-------l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~--------~ 141 (309)
...+.-.|++.|+.+..-+-|.+ |+-+.+.|+.+. -+.|-.|..|.-||+|-+........+. .
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 35677789999999888887777 788888887652 2345568899999998543311111111 1
Q ss_pred eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEE
Q 021648 142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 211 (309)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d 211 (309)
.+.+--.+|.++.++.+|.||+||-. ..+.+..+..+ ...|.-|..+.||+++++.+ +-.+.+.|
T Consensus 434 sc~aTT~sG~IvvgS~~GdIRLYdri-~~~AKTAlPgL---G~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 434 SCFATTESGYIVVGSLKGDIRLYDRI-GRRAKTALPGL---GDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ceeeecCCceEEEeecCCcEEeehhh-hhhhhhccccc---CCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 22333456778878889999999942 11111111122 24677888999999987654 44455555
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.87 E-value=0.22 Score=41.74 Aligned_cols=181 Identities=16% Similarity=0.152 Sum_probs=112.1
Q ss_pred EEEEEecCCCCeEEEecCCC--cEEEeeCCCceeeeeeeecCce---eEEECCCCcEEEEE-ECCEEEEEECCCCCcCCc
Q 021648 101 VVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPF 174 (309)
Q Consensus 101 v~~v~~~~~~~~l~s~s~Dg--~v~~Wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~ 174 (309)
.-++.|..++..+-|.+.-| .|+.+|+.+++......++... ..... .+.++-.. .++...+||..+++. .
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~--~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK--I 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE--E
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE--E
Confidence 45677777787888887766 8899999998876655544321 11222 23444455 368889999876542 2
Q ss_pred eEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC--CCCCccceEEECCCCCEEEEEcCCCcE
Q 021648 175 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP--VSRNSTLEASFSPEGMFVISGSGDGSV 252 (309)
Q Consensus 175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~sp~g~~l~s~s~Dg~i 252 (309)
..+...+ .-..++ .||+.|+......+++.+|..+-+...+..... .....+..+.|- +|...|=.-....|
T Consensus 124 ~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 124 GTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 2233322 234455 578888888888899999998877777665431 112234556664 78888888888889
Q ss_pred EEEECCCCceEEEee-----c-------C---CCCCcEEEECCC-eeEEEEccc
Q 021648 253 YAWSVRSGKEVASWM-----S-------F---DTEPPVIKWTPG-SLMFVTGSS 290 (309)
Q Consensus 253 ~vwd~~~~~~~~~~~-----~-------~---~~~v~~l~~~p~-~~~l~s~~~ 290 (309)
...|..+|+.+..+- . . ..-.+.|||.|. +++++||-.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 999999998766541 0 0 123577999885 577888754
No 360
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.86 E-value=0.097 Score=49.36 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=81.3
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE--CCCCCEEEEEcCCCcEEEEECCC---
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGSGDGSVYAWSVRS--- 259 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--sp~g~~l~s~s~Dg~i~vwd~~~--- 259 (309)
....+..|+-++..+..+...++.|||...+.+..+-.. .....|.++.| .|||+.+++.|-...|.++--..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 345566677777777766777899999988875544332 23456777776 57999999999999999986421
Q ss_pred ------CceEEE--eecCC-CCCcEEEECCCeeEEEEccceEEEeeecC
Q 021648 260 ------GKEVAS--WMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 260 ------~~~~~~--~~~~~-~~v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
...++. +..|+ .+|.+..|.++|.+++..+....++...+
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWL 157 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCc
Confidence 223333 23444 57899999999999999988888765544
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.85 E-value=0.45 Score=45.16 Aligned_cols=210 Identities=15% Similarity=0.129 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcC-----CCCCceeEEEEccCCceEEEeeecccCEEEEEe
Q 021648 32 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-----NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 106 (309)
Q Consensus 32 D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-----~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~ 106 (309)
||.+.--+-.....+.-..+....+...+++++++.+++... +.....+.+.+. .++......+. ....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceE
Confidence 666644432222222222222234667889999998877652 112234555554 23333333333 3677789
Q ss_pred cCCCCeEEEecCCCc-EEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCC
Q 021648 107 CSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 185 (309)
Q Consensus 107 ~~~~~~l~s~s~Dg~-v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 185 (309)
+|||+.+++.+.... +++.+... .+.+.+.++...+.. . . ....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~----------------------------~gql~~~~vd~ge~~---~-~---~~g~ 449 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPA----------------------------TGQLARTPVDASAVA---S-R---VPGP 449 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCC----------------------------CceEEEEeccCchhh---h-c---cCCC
Confidence 999888888763322 22221100 112222222211110 0 1 1135
Q ss_pred CeEEEEccCCCEEEEEeCCCcEEE---EECCCCeE-e-EEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC-
Q 021648 186 ANVVKFSNDGRLMLLTTMEGHIHV---LDSFRGTL-L-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS- 259 (309)
Q Consensus 186 ~~~v~~s~dg~~l~~~~~dg~v~i---~d~~~~~~-~-~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~- 259 (309)
+..+.+||||..++... +++|++ -....|.. + ............+..+.|.+++..+ .+..++.-.+|.+.-
T Consensus 450 Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 450 ISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred cCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence 78899999999988765 578877 44444541 1 1111112222334678999998854 555555455555421
Q ss_pred CceEEEeec--CCCCCcEEEECCC
Q 021648 260 GKEVASWMS--FDTEPPVIKWTPG 281 (309)
Q Consensus 260 ~~~~~~~~~--~~~~v~~l~~~p~ 281 (309)
|.....+.. ....+..|+=+|+
T Consensus 528 G~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 528 GSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred CccccccCCCCccCceEEEecCCc
Confidence 222111122 2456667776664
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.35 Score=43.80 Aligned_cols=192 Identities=16% Similarity=0.212 Sum_probs=99.3
Q ss_pred EEeCCCCCEEEEeeCC-----------CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 17 MDFHKSSSYLVTASDD-----------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 17 i~~s~~~~~l~t~s~D-----------~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
++.+|.|..+|..-.+ ..|+||+. .|+.+..+.-....+-.+.|+.+.+.++... |+.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~----dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQS----DGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEc----CCEEEEEeC
Confidence 4556666666665443 15889986 4777777665556678888887655555543 789999998
Q ss_pred cCCc------eEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEee-CCCceeeeee-eecCc-------e----eEEE
Q 021648 86 HDNK------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLL-RVQGR-------P----AAAY 146 (309)
Q Consensus 86 ~~~~------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd-~~~~~~~~~~-~~~~~-------~----~~~~ 146 (309)
.... .+....-....+....+..+|-.+++. ++.+.+-+ .........+ ..+.. . ...+
T Consensus 109 ~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 109 FGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred CCceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 6333 111111112222222333344333443 33333322 2211010000 00000 0 0011
Q ss_pred CC-CCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 147 DD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 147 ~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
.. ....+....++.+.+.+....+. +. ...++..+++||+|+++|.-..+|++.+....-.+.+.++..
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~-------i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ-------ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc-------cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 11 22233334455566444322110 11 124678899999999999999999999887655555555543
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.32 Score=42.08 Aligned_cols=217 Identities=17% Similarity=0.184 Sum_probs=110.0
Q ss_pred cCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee--cC
Q 021648 63 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV--QG 140 (309)
Q Consensus 63 ~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~--~~ 140 (309)
++...++++-- ..+.|.-|+.++++. ..+. +.+.+.++.....+..|+++. .-+.+++++++.....+.. ..
T Consensus 34 ~~~~~L~w~DI--~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 34 PDRGALLWVDI--LGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred CCCCEEEEEeC--CCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCC
Confidence 34444444422 245677777765532 2222 233334444434444566653 3445666654443222211 11
Q ss_pred -----ceeEEECCCCcEEEEEEC------------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEE-e
Q 021648 141 -----RPAAAYDDQGLVFAVAFG------------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-T 202 (309)
Q Consensus 141 -----~~~~~~~~~~~~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~-~ 202 (309)
-+-....+++.+..+... +.++.+|.... ....+..+..--+.++||||++.+..+ +
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 112333444544443322 33444442110 011111223345789999999665554 5
Q ss_pred CCCcEEEEECCC--CeEeEE--eeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCCCceEEEeecCCCCCcEEE
Q 021648 203 MEGHIHVLDSFR--GTLLST--YNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRSGKEVASWMSFDTEPPVIK 277 (309)
Q Consensus 203 ~dg~v~i~d~~~--~~~~~~--~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~ 277 (309)
..+.|+-|+... +..... +-......+..=.++...+|.+.+++-.+| .|.+|+.. ++++....-.-..+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 568888887642 111110 111111223333456667888886555554 89999998 888887765546888999
Q ss_pred ECC-C-eeEEEEccce
Q 021648 278 WTP-G-SLMFVTGSSE 291 (309)
Q Consensus 278 ~~p-~-~~~l~s~~~d 291 (309)
|-- + ..++++....
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 855 3 3566665543
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.75 E-value=0.069 Score=51.70 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=60.9
Q ss_pred EEEEeCCCcEEEEECCCCe--EeEEeeecCC-CCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCc
Q 021648 198 MLLTTMEGHIHVLDSFRGT--LLSTYNVKPV-SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP 274 (309)
Q Consensus 198 l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~-~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~ 274 (309)
...|-.+..+..||++-.. ++.. ..+.. ......+++=+.+ .+||.||.+|.||+||.-..+.-..+++...+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeec-cccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence 3456677788889987632 2221 11111 2223334444444 5889999999999999643333334678889999
Q ss_pred EEEECCCeeEEEEccce
Q 021648 275 VIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 275 ~l~~~p~~~~l~s~~~d 291 (309)
.|..+.||++++..+..
T Consensus 623 ~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 623 GIDVTADGKWILATCKT 639 (794)
T ss_pred EEEecCCCcEEEEeecc
Confidence 99999999988777764
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.73 E-value=0.43 Score=43.26 Aligned_cols=239 Identities=13% Similarity=0.076 Sum_probs=112.2
Q ss_pred eEEEEecCCCEEEEEc-CCCC-CceeEEEEccCCceEEEe-eecccCEEEEEecCCCCeEEEecCCC-----------cE
Q 021648 57 DLVCFTSHPTTVIYSS-KNGW-DESLRLLSLHDNKYLRYF-KGHHDRVVSLSLCSSKDCFISGSLDR-----------TV 122 (309)
Q Consensus 57 ~~~~~~~~~~~~~~~s-~~g~-d~~i~~~d~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg-----------~v 122 (309)
...+++|++++++++. .+|. ..+++++|+++++.+... ..- . -..+.|.++++.|+-...|. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3578899999888763 3332 267999999999765432 221 1 12389999988765554333 37
Q ss_pred EEeeCCCceee--eeeeecC----ceeEEECCCCcEEEEE-E---C-CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE
Q 021648 123 LLWDQRAEKCQ--GLLRVQG----RPAAAYDDQGLVFAVA-F---G-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 191 (309)
Q Consensus 123 ~~Wd~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~-~---~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~ 191 (309)
.+|.+.+.... .++.... ......+.++.++... . + ..+.+.|+.....+......+......+.....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 78887655433 1222211 1233445555554433 2 2 457777776531111111112112223333333
Q ss_pred ccCCCEEEEEe---CCCcEEEEECCCCeE--eEEeeecCCCCCccceEEECCCCCEEEEE-cCCC--cEEEEECCCCceE
Q 021648 192 SNDGRLMLLTT---MEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDG--SVYAWSVRSGKEV 263 (309)
Q Consensus 192 s~dg~~l~~~~---~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~sp~g~~l~s~-s~Dg--~i~vwd~~~~~~~ 263 (309)
..++.+++... .++.|.-.++..... ....-.. +...+.-..+...+++|+.. -.++ .|+++++..+...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP--EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC--CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33444444332 235666667665542 1111111 11212223344444455444 4444 7899999834444
Q ss_pred EEeecC-CCCCcEEEECCCe-eEEEEccce---EEEeeecC
Q 021648 264 ASWMSF-DTEPPVIKWTPGS-LMFVTGSSE---LSFWIPDL 299 (309)
Q Consensus 264 ~~~~~~-~~~v~~l~~~p~~-~~l~s~~~d---~~~~~~~~ 299 (309)
.....- .+.+..+...+++ .++.+.++- -.+|..++
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 333221 2234455555544 344444331 55555544
No 366
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.27 Score=40.78 Aligned_cols=87 Identities=9% Similarity=0.004 Sum_probs=61.1
Q ss_pred EecCCCcceEEEEeCC-------------------CCCEEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCC
Q 021648 6 SFRDYNGRISSMDFHK-------------------SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT 66 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~-------------------~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 66 (309)
....|++.+.++.+-. -|++++.|.+.+.+-+-++.+|+.+..+.....--......+++.
T Consensus 27 ~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g 106 (354)
T KOG4649|consen 27 VIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG 106 (354)
T ss_pred EEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc
Confidence 3456777777765432 156788999999999999999988877654432112234456676
Q ss_pred EEEEEcCCCCCceeEEEEccCCceEEEee
Q 021648 67 TVIYSSKNGWDESLRLLSLHDNKYLRYFK 95 (309)
Q Consensus 67 ~~~~~s~~g~d~~i~~~d~~~~~~~~~~~ 95 (309)
.+..++. |++....|..+..++...+
T Consensus 107 lIycgsh---d~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 107 LIYCGSH---DGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eEEEecC---CCcEEEecccccceEEecc
Confidence 7777764 8899999999888776654
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.013 Score=53.72 Aligned_cols=91 Identities=18% Similarity=0.301 Sum_probs=66.5
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc-eEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
.+.-+.++|.-..+|.+..+|.|.+.... -..+-++. .+...+. +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 35567789999999999999988776543 23333332 2334444 8999999999999999999999999999887
Q ss_pred EEee-cCCCCCcEEEEC
Q 021648 264 ASWM-SFDTEPPVIKWT 279 (309)
Q Consensus 264 ~~~~-~~~~~v~~l~~~ 279 (309)
..+. .....|.+.-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 7631 234466777675
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.72 E-value=0.13 Score=36.94 Aligned_cols=99 Identities=12% Similarity=0.235 Sum_probs=54.5
Q ss_pred EEEEEecC---CC-CeEEEecCCCcEEEeeCCCceeeeeeeecCc-eeEEECCCCcEEEEEECCEEEEEECCCCCcCCce
Q 021648 101 VVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 175 (309)
Q Consensus 101 v~~v~~~~---~~-~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 175 (309)
|++++++. || +.|+.||.|..||+|+- ......+..... ........+.+..+-.+|+|.+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc------e
Confidence 56666653 33 47999999999999973 334444433332 233444445555555678888876321 1
Q ss_pred EEEeCCCCCCCeEEE-Ecc--CC-CEEEEEeCCCcEE
Q 021648 176 IFSVGGDISDANVVK-FSN--DG-RLMLLTTMEGHIH 208 (309)
Q Consensus 176 ~~~~~~~~~~~~~v~-~s~--dg-~~l~~~~~dg~v~ 208 (309)
++.+..... +.+++ +.. || ..|++|-.+|.|-
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222222 33332 333 33 3577887888763
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.0077 Score=48.55 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCEEEEeeCCCcEEEEEcCC-CceeeeeeccccceeEEEEecCCCE--EEEEcCCCCCceeEEEEccCCceEEEeeecc-
Q 021648 23 SSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHH- 98 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~- 98 (309)
+.-++.|+.|+.|.+|.... |.....+...... ..+..|.+.. +.+.. .+|+.||.|+++-++.+....+|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--i~~~Ip~~~~~~~~c~~--~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--IDLGIPNGRDSSLGCVG--AQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccccc--ceeccccccccceeEEe--ccCCceeeeccccCceeeeeccccC
Confidence 35678888999999998751 2211111111111 1223343333 33332 458999999999988888777787
Q ss_pred cCEEEEEecCCCCeEEEe--cCCCcEEEeeCCC
Q 021648 99 DRVVSLSLCSSKDCFISG--SLDRTVLLWDQRA 129 (309)
Q Consensus 99 ~~v~~v~~~~~~~~l~s~--s~Dg~v~~Wd~~~ 129 (309)
.++.....+..++.++.+ |.|..++.|+++.
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 566666666666677777 7788888887654
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.65 E-value=0.0082 Score=35.95 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=29.3
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT 44 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~ 44 (309)
...|..++|+|..+++|.|..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999988 443
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.62 E-value=0.42 Score=41.73 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=108.0
Q ss_pred cEEEEEcCCCceeeeeecccc-ceeEEE---EecC----CCEEEEEcCC--C----CC-ceeEEEEccCC----ceEEEe
Q 021648 34 SIRLYDVTAATCLKTINSKKY-GVDLVC---FTSH----PTTVIYSSKN--G----WD-ESLRLLSLHDN----KYLRYF 94 (309)
Q Consensus 34 ~v~iWd~~~~~~~~~~~~~~~-~v~~~~---~~~~----~~~~~~~s~~--g----~d-~~i~~~d~~~~----~~~~~~ 94 (309)
.|+|.|..+.+.+.++.-.+. .+.+++ +..+ ..+++.+..- + .. |.+.++++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888888777766554332 233322 3222 2355544311 1 12 78999999874 223322
Q ss_pred --eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCce-eeeeeee--cCceeEEECCCCcEEEEEECCEEEEEECCCC
Q 021648 95 --KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRV--QGRPAAAYDDQGLVFAVAFGGYIRMFDARKY 169 (309)
Q Consensus 95 --~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 169 (309)
....++|.+++-. +++ |+.+. .+.+.+|++...+ ....-.. +............++.+.....+.++..+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~- 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE- 158 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET-
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc-
Confidence 3457889998866 444 44443 5899999987766 3222111 111111111233444443445566553322
Q ss_pred CcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC-------C--eEeEEeeecCCCCCccceE---EEC
Q 021648 170 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------G--TLLSTYNVKPVSRNSTLEA---SFS 237 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-------~--~~~~~~~~~~~~~~~~~~~---~~s 237 (309)
+...+....-......+.++.|-+|++.++.+..+|.+.++.... + .+......+ ....+..+ ++.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEEE--SS
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEEEEEee
Confidence 111222222222233466777776777999999999999987542 2 222222221 11233333 344
Q ss_pred C--CCC------EEEEEcCCCcEEEE
Q 021648 238 P--EGM------FVISGSGDGSVYAW 255 (309)
Q Consensus 238 p--~g~------~l~s~s~Dg~i~vw 255 (309)
| .+. .++-++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 5 222 47888889988843
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.14 Score=46.40 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=68.3
Q ss_pred CeEEEEccCCCE-------EEEEeCCCcEEEEECCCCe--EeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648 186 ANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 186 ~~~v~~s~dg~~-------l~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd 256 (309)
++.+.+.|+.+. -+.|-.|..|.-||++-.. .+..-+.+........++.-.-...+|+.||.+|.||+||
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd 457 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYD 457 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeeh
Confidence 566667666542 2456678888889986322 1211111111222222233333456999999999999999
Q ss_pred CCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 257 VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 257 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
.-..+.-..+++...+|..|.-+.+|+.++..+..
T Consensus 458 ri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 458 RIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred hhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 94333344578999999999999999988776653
No 373
>PHA02713 hypothetical protein; Provisional
Probab=96.38 E-value=0.73 Score=43.61 Aligned_cols=69 Identities=4% Similarity=-0.034 Sum_probs=40.3
Q ss_pred ccCCCEEEEEeCCC------cEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC--cEEEEECCCCce
Q 021648 192 SNDGRLMLLTTMEG------HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKE 262 (309)
Q Consensus 192 s~dg~~l~~~~~dg------~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg--~i~vwd~~~~~~ 262 (309)
.-+|++.+.|+.++ .|..||+.+ .+-...... +........+. -+|+..+.||.|+ ++..||..+.+-
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEE--ECCEEEEEeeecceeehhhcCcccccc
Confidence 34678888887542 366788876 332211111 11111111222 2889999999998 788888877654
Q ss_pred E
Q 021648 263 V 263 (309)
Q Consensus 263 ~ 263 (309)
.
T Consensus 538 ~ 538 (557)
T PHA02713 538 N 538 (557)
T ss_pred c
Confidence 3
No 374
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.008 Score=57.04 Aligned_cols=104 Identities=12% Similarity=0.212 Sum_probs=75.8
Q ss_pred EEccCCCEEEEEe----CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE
Q 021648 190 KFSNDGRLMLLTT----MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS 265 (309)
Q Consensus 190 ~~s~dg~~l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~ 265 (309)
.+.|...+++.++ ..|.|.|| ..+|++...... | -.+.+++|+|.--.|+.|-.-|.+.+|...+.+.-..
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-P---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-c---eehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 4566666665554 24677777 356664432221 1 1234689999988999999999999999988766555
Q ss_pred eecCCCCCcEEEECCCeeEEEEccce--EEEeeec
Q 021648 266 WMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 298 (309)
Q Consensus 266 ~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~ 298 (309)
...|+.++..+.|||+|..++++..- +.+|.-+
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66899999999999999999999865 6666554
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.015 Score=53.38 Aligned_cols=76 Identities=12% Similarity=0.220 Sum_probs=63.2
Q ss_pred cceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEeecCCCCCc-EEEECCCeeEEEEccceEEEeeecCCCcccccc
Q 021648 231 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP-VIKWTPGSLMFVTGSSELSFWIPDLSKLGAYVG 307 (309)
Q Consensus 231 ~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~-~l~~~p~~~~l~s~~~d~~~~~~~~~~~~~~~~ 307 (309)
+..+.|+|.-..+|.+..+|.+-+..+. .+++.+++-++..++ +++|.|||+++|.|-+|.++-.-|-.+-+.+.+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4467899999999999999999999886 888999887777777 999999999999999997776666555444433
No 376
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.26 E-value=1 Score=42.26 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=63.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccc-cceeE----------EEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDL----------VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 91 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~ 91 (309)
+..+..++.++.|.-.|..+|+.+-.+.... ..+.. +++ .+..++.+. .|+.+...|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t---~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT---LDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc---CCCEEEEEECCCCCEE
Confidence 4566667778889999999999887654321 11110 111 223455544 3778999999999988
Q ss_pred EEeee--ccc--CEEEEEecCCCCeEEEec------CCCcEEEeeCCCceeeee
Q 021648 92 RYFKG--HHD--RVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGL 135 (309)
Q Consensus 92 ~~~~~--h~~--~v~~v~~~~~~~~l~s~s------~Dg~v~~Wd~~~~~~~~~ 135 (309)
..... +.. .+.+--...++. ++.++ .+|.|...|.++++.+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEe
Confidence 76542 111 122211112444 44432 378999999988876544
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.22 E-value=0.015 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=29.5
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
..+..++|+|....||.|+.||.|.++.+ +++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 45678899999999999999999999999 66553
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.011 Score=47.63 Aligned_cols=142 Identities=16% Similarity=0.086 Sum_probs=71.0
Q ss_pred EEEecCCCcEEEeeCCCceeeee-eeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE
Q 021648 113 FISGSLDRTVLLWDQRAEKCQGL-LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF 191 (309)
Q Consensus 113 l~s~s~Dg~v~~Wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~ 191 (309)
+..-+.|+.|+-.+++..+.... .++...-...+.-...++.++.++.|.+|...-+.. ....+.. +...-...|..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s-~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGA-HSDRVCS-GEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccch-HHHhhhc-ccccceecccc
Confidence 34445678877766543321100 000000012222344577777899999997642111 0011110 01011112222
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCC-CccceEEECCCCCEEEEE--cCCCcEEEEECCC
Q 021648 192 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISG--SGDGSVYAWSVRS 259 (309)
Q Consensus 192 s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~sp~g~~l~s~--s~Dg~i~vwd~~~ 259 (309)
-.++.+..++..||.|+.|+...+..+.... +|. .+......+..+++++.+ |.|..++.|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3345578889999999999987766655432 222 223333444555666666 6666666666643
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.76 Score=39.82 Aligned_cols=220 Identities=14% Similarity=0.127 Sum_probs=116.3
Q ss_pred EeCCCCC-EEEEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe--
Q 021648 18 DFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF-- 94 (309)
Q Consensus 18 ~~s~~~~-~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~-- 94 (309)
.|.++.. ++.+--..+.|.-||..+++.. .+.... .+..+.....+..++.+ +..+.+++.+.+..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~-~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPG-GFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCC-CcccceeecCCCeEEEE-----ccccEEEeccCCceeEEecc
Confidence 4566665 4445556777777777655322 122111 22333333334444444 345777887655542222
Q ss_pred --eecc-cCEEEEEecCCCCeEEEecC-----------CCcEEEeeCCCceeeeeee--ecCceeEEECCCCcEEEEEE-
Q 021648 95 --KGHH-DRVVSLSLCSSKDCFISGSL-----------DRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF- 157 (309)
Q Consensus 95 --~~h~-~~v~~v~~~~~~~~l~s~s~-----------Dg~v~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 157 (309)
.+.. .+-+.+...|+|++-++-.. -|.+...|. .++....+. ....+.+++++++..+..+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1222 45567778888875544332 123444443 222222221 12234578888886665554
Q ss_pred -CCEEEEEECCC--CCc-CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-cEEEEECCCCeEeEEeeecCCCCCccc
Q 021648 158 -GGYIRMFDARK--YEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTL 232 (309)
Q Consensus 158 -~~~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~ 232 (309)
.+.|.-|+... ... ++-............-.++...+|.+.+++..+| .|.+|+.. |+++..+.... ..+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---CCCc
Confidence 37787777642 110 1111111111222233467788888886555554 99999988 99998887542 3455
Q ss_pred eEEE-CCCCCEEEEEcCC
Q 021648 233 EASF-SPEGMFVISGSGD 249 (309)
Q Consensus 233 ~~~~-sp~g~~l~s~s~D 249 (309)
+++| .|+.+.|...+..
T Consensus 259 ~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 259 NPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cceEeCCCcCEEEEEecC
Confidence 6777 4666666555543
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.10 E-value=1.6 Score=42.90 Aligned_cols=284 Identities=10% Similarity=0.126 Sum_probs=144.3
Q ss_pred CCcceEEEEeCCCC------CEEEEeeCCCcEEEEEc-CCCcee--eeeecccc--ceeEEEEecCCCEEEEEcCCCCCc
Q 021648 10 YNGRISSMDFHKSS------SYLVTASDDESIRLYDV-TAATCL--KTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDE 78 (309)
Q Consensus 10 h~~~V~~i~~s~~~------~~l~t~s~D~~v~iWd~-~~~~~~--~~~~~~~~--~v~~~~~~~~~~~~~~~s~~g~d~ 78 (309)
.+.+|.|++++|-| ++++.|.|+..+++--. .....+ ..+..... .+...++-.+..+++++.. |+
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg---dG 605 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG---DG 605 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcC---Cc
Confidence 34689999999753 37899999887765533 232222 22333322 2444555555667777653 67
Q ss_pred eeEEEEc--cCCceEEEeeec--ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecCcee-EEECCC--Cc
Q 021648 79 SLRLLSL--HDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQ--GL 151 (309)
Q Consensus 79 ~i~~~d~--~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~-~~~~~~--~~ 151 (309)
.+..+.+ .++..-..-+.| ..++.==.|+..++.-+-+..|+-..++..+..-+...+.++.... +.+..+ +-
T Consensus 606 ~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 606 ALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPD 685 (1096)
T ss_pred eEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCc
Confidence 7876654 444321111111 2233333455555544444447777777643333333333332211 222211 22
Q ss_pred EEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe-----------CCC---cEEEEECCCCeE
Q 021648 152 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-----------MEG---HIHVLDSFRGTL 217 (309)
Q Consensus 152 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~-----------~dg---~v~i~d~~~~~~ 217 (309)
-++.+.++.+++..+... +.+++.++--. ...+.+++.+....+...+ .+. .++++|..+-+.
T Consensus 686 ~l~~~~~~~l~i~tid~i--qkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEI--QKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred eEEEecCCceEEEEecch--hhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 444555666777654322 12222221111 1233444444222222211 122 366777777666
Q ss_pred eEEeeecCC-CCCccceEEECCC-CCEEEEEcC----------CCcEEEEECCCCceEEEeec--CCCCCcEEEECCCee
Q 021648 218 LSTYNVKPV-SRNSTLEASFSPE-GMFVISGSG----------DGSVYAWSVRSGKEVASWMS--FDTEPPVIKWTPGSL 283 (309)
Q Consensus 218 ~~~~~~~~~-~~~~~~~~~~sp~-g~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~ 283 (309)
+...+.... ..-.+.++.|..| +.+++.|.. -|.|.|+.......+..... -.+.+.++. --+|+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCe
Confidence 654432211 1123455668887 677777743 37888888877444433322 233444443 24899
Q ss_pred EEEEccceEEEeeecCC
Q 021648 284 MFVTGSSELSFWIPDLS 300 (309)
Q Consensus 284 ~l~s~~~d~~~~~~~~~ 300 (309)
++|.-++-++++.|...
T Consensus 842 llA~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 842 LLAGINQSVRLYEWTTE 858 (1096)
T ss_pred EEEecCcEEEEEEcccc
Confidence 99999999999988665
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.08 E-value=0.067 Score=50.62 Aligned_cols=103 Identities=11% Similarity=0.029 Sum_probs=60.5
Q ss_pred CCCeEEEEccCCCEEEEEe------CCC--cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC------
Q 021648 184 SDANVVKFSNDGRLMLLTT------MEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------ 249 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~------~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D------ 249 (309)
..+...++||||+.++.-. .|+ .+.+++. .+.. ..+.. ......-.|+|||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~----g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE----GHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec----CCCCCCceECCCCCceEEEecCcceEEE
Confidence 3567789999999887665 243 4445453 2222 22211 1124456899999988887533
Q ss_pred ------CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccceEEEee
Q 021648 250 ------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 296 (309)
Q Consensus 250 ------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~~~~~ 296 (309)
+.+.+.++..++... ...+.|..++|||||..++.... .++++
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 233333444433222 34567999999999986655332 34554
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.03 Score=54.63 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=59.2
Q ss_pred CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648 184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
.+|.+++|+.+|+.++.|-.+|.|.+||...+..++.+.........+.-+.+..++..++++..-|. +|..
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 57899999999999999999999999999998888877655444556666777778888888888886 5554
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.01 E-value=0.93 Score=39.44 Aligned_cols=268 Identities=12% Similarity=0.094 Sum_probs=143.5
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCC---C----CCceeEEEEccCCceEEEeeeccc------
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---G----WDESLRLLSLHDNKYLRYFKGHHD------ 99 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---g----~d~~i~~~d~~~~~~~~~~~~h~~------ 99 (309)
+.+.+.|.++++.+-.+...-. ..+.++|+++.++.+..- + -...|.+||.++-+....+.--.+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 3788999999887776665432 235678999988765310 1 134688999988765554332111
Q ss_pred -CEEEEEecCCCCeEEEe--cCCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcCCceE
Q 021648 100 -RVVSLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI 176 (309)
Q Consensus 100 -~v~~v~~~~~~~~l~s~--s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 176 (309)
......++.|++++... +---+|-+-|+..++....+..++-.......+..+.+.+.||.+....+...-+.....
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 11224566677754433 445567777777777776666555322222233456667777777666654211110000
Q ss_pred EEe-CCCCCCC-eEEEEccCCCEEEEEeCCCcEEEEECCCCeEe--EEeeecCCC---C----CccceEEECCCCCEEEE
Q 021648 177 FSV-GGDISDA-NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVS---R----NSTLEASFSPEGMFVIS 245 (309)
Q Consensus 177 ~~~-~~~~~~~-~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~---~----~~~~~~~~sp~g~~l~s 245 (309)
... .....++ ..-.++..+..+..-+.+|.|+-.|....... ......... . +---.+++++..+.|..
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 001 1111111 11234555666667888999998887543322 222211000 0 00113678876544443
Q ss_pred E---cCCC-------cEEEEECCCCceEEEeecCCCCCcEEEECCCee-EEEE--c-cceEEEeeecCCCcc
Q 021648 246 G---SGDG-------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVT--G-SSELSFWIPDLSKLG 303 (309)
Q Consensus 246 ~---s~Dg-------~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~s--~-~~d~~~~~~~~~~~~ 303 (309)
- +.++ .|=++|+.+++.+..+.. ..++.+|+.+.+.+ +|.. + ..++.++.+.-.++-
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 3 2222 677888999999988763 23577899998764 5533 3 245777777554443
No 384
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.96 E-value=0.99 Score=40.26 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=55.7
Q ss_pred CeEEEEccCCCEEEEEeCCCcEEEE-ECCC-------CeEeE-Eeeec-CCCCCccceEEECCCCCEEEEEcCC------
Q 021648 186 ANVVKFSNDGRLMLLTTMEGHIHVL-DSFR-------GTLLS-TYNVK-PVSRNSTLEASFSPEGMFVISGSGD------ 249 (309)
Q Consensus 186 ~~~v~~s~dg~~l~~~~~dg~v~i~-d~~~-------~~~~~-~~~~~-~~~~~~~~~~~~sp~g~~l~s~s~D------ 249 (309)
...+++.++| ++++ .. ..|..+ |... .+.+. .+... ..+......++|.|||+..++-+.-
T Consensus 74 p~Gi~~~~~G-lyV~-~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYVA-TP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEEe-CC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 4667888888 5554 33 345444 4321 11121 11111 0012335578999999887766621
Q ss_pred -------------CcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 250 -------------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 250 -------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
|.|.-++..+++ +..+..--.....++|+|+++++++-..+
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 445566665443 22222212346789999999998875543
No 385
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.80 E-value=1.3 Score=39.98 Aligned_cols=223 Identities=12% Similarity=0.153 Sum_probs=99.0
Q ss_pred ecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee--c------cccceeEEEEec-----CC---CEEEE
Q 021648 7 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--S------KKYGVDLVCFTS-----HP---TTVIY 70 (309)
Q Consensus 7 ~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~~~~ 70 (309)
++...++|++++.|.-| ++|.|..||++.|-|......+..-. . ....++.+.|.. ++ -.+++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 45568999999998544 99999999999999998776665422 1 112355555541 11 12233
Q ss_pred EcCCCCCceeEEEEcc--C-CceEEEee----ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-ee-eecCc
Q 021648 71 SSKNGWDESLRLLSLH--D-NKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LL-RVQGR 141 (309)
Q Consensus 71 ~s~~g~d~~i~~~d~~--~-~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~-~~-~~~~~ 141 (309)
+.. .+.+.+|.+. . +.....+. .+.++|..+. ..|.++++... .. .++..
T Consensus 161 GTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 161 GTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGL 219 (395)
T ss_dssp EET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGG
T ss_pred EeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcc
Confidence 322 3456666542 1 11111111 1222222222 11222221100 00 00000
Q ss_pred eeEEECCCCcEEEEEECCEEEEEECCCCCcCCceEEEeCCCCCCCeEEEE-----ccCCCEEEEEeCCCcEEEEECCCCe
Q 021648 142 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF-----SNDGRLMLLTTMEGHIHVLDSFRGT 216 (309)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~-----s~dg~~l~~~~~dg~v~i~d~~~~~ 216 (309)
.. .. .-..++.+..+..+|++...+.+. ..... ........+++ ...+..|++-..+|.|+++-+..-+
T Consensus 220 ~~-g~-~i~g~vVvvSe~~irv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 220 SK-GI-SIPGYVVVVSESDIRVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp GG-T-----EEEEEE-SSEEEEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred cc-CC-CcCcEEEEEcccceEEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 00 00 012245556678888887654321 11111 11011122333 2367788888999999999998877
Q ss_pred EeEEeeecC-CCCCccceEEECCCCCEEEEEcCCC--cEEEEEC
Q 021648 217 LLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDG--SVYAWSV 257 (309)
Q Consensus 217 ~~~~~~~~~-~~~~~~~~~~~sp~g~~l~s~s~Dg--~i~vwd~ 257 (309)
.+....... ..........++++|..++-.|... .+.+|.-
T Consensus 294 ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 294 EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred HhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEcc
Confidence 776665432 1223345678899999887776543 3344443
No 386
>PHA02713 hypothetical protein; Provisional
Probab=95.78 E-value=1.6 Score=41.43 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=83.2
Q ss_pred CCCeEEEecCC------CcEEEeeCCCceeeeeeeecC---ceeEEECCCCcEEEE-EEC-----CEEEEEECCCCCcCC
Q 021648 109 SKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAV-AFG-----GYIRMFDARKYEKGP 173 (309)
Q Consensus 109 ~~~~l~s~s~D------g~v~~Wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~-----~~i~~~d~~~~~~~~ 173 (309)
+++..+.||.+ .++..+|++++.....-.++. ....+. -++.+++. |.+ ..+..||....+=
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-- 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKW-- 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeE--
Confidence 56777888754 346788887765432222211 112222 23444443 333 3477788654210
Q ss_pred ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-----------------------cEEEEECCCCeEeEEeeecCCCCCc
Q 021648 174 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----------------------HIHVLDSFRGTLLSTYNVKPVSRNS 230 (309)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~~~~ 230 (309)
..+..+.........+ .-+|++++.||.++ .+..||+.+.+-... .+.....
T Consensus 380 ~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r 454 (557)
T PHA02713 380 KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGT 454 (557)
T ss_pred EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCccc
Confidence 0000000011111222 33788888887653 466777766543221 1111111
Q ss_pred cceEEECCCCCEEEEEcCCC------cEEEEECCC---CceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 231 TLEASFSPEGMFVISGSGDG------SVYAWSVRS---GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 231 ~~~~~~sp~g~~l~s~s~Dg------~i~vwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
....+..-+|+..+.||.++ .+..||..+ ++.+..++..-.....+++ ++++.+.|+.+
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~ 522 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE 522 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec
Confidence 11112223677777787652 467899886 3334444332222222332 77888888854
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.76 E-value=1.9 Score=40.98 Aligned_cols=227 Identities=13% Similarity=0.143 Sum_probs=108.7
Q ss_pred CCCCEEEEeeCC------CcEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCC------ceeEEEEcc
Q 021648 21 KSSSYLVTASDD------ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWD------ESLRLLSLH 86 (309)
Q Consensus 21 ~~~~~l~t~s~D------~~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d------~~i~~~d~~ 86 (309)
..+.+++.||.+ .++..+|..+++-... +..... ...++... + .+++. +|.| .++..||..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~-~-~lYv~--GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLN-G-KLYVV--GGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEEC-C-EEEEE--ccccCCCcccceEEEecCC
Confidence 345677888887 4778888876632221 221111 12223322 2 33322 2444 466777877
Q ss_pred CCceEE--EeeecccCEEEEEecCCCCeEEEecCCC-----cEEEeeCCCceeeeeeeecC-c-eeEEECCCCcEEE-EE
Q 021648 87 DNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG-R-PAAAYDDQGLVFA-VA 156 (309)
Q Consensus 87 ~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-----~v~~Wd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~ 156 (309)
.++=.. .+...... .+++. -+|...+.||.|| ++..||+++.+....-.+.. . ......-.+.+++ +|
T Consensus 358 ~~~W~~~a~M~~~R~~-~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSD-FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCceeccCCccCcccc-ceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcC
Confidence 665111 11111111 11111 2577888999886 57788887776543322211 1 1111222344443 44
Q ss_pred EC------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCc-----EEEEECCCCeEeEEeeecC
Q 021648 157 FG------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-----IHVLDSFRGTLLSTYNVKP 225 (309)
Q Consensus 157 ~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~-----v~i~d~~~~~~~~~~~~~~ 225 (309)
.+ ..+..||..+..=. .+........... ...-++.+++.||.|+. |..+|..+.+-...-...
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~--~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~- 510 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWT--LIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT- 510 (571)
T ss_pred cCCCccccceEEEEcCCCCcee--ecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-
Confidence 33 35677776542100 0000000111111 23347888888887763 666777665543321111
Q ss_pred CCCCccceEEECCCCCEEEEEcCCC-----cEEEEECCCCc
Q 021648 226 VSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGK 261 (309)
Q Consensus 226 ~~~~~~~~~~~sp~g~~l~s~s~Dg-----~i~vwd~~~~~ 261 (309)
.....+..+ .-+++..+.|+.|| +|..||..+.+
T Consensus 511 ~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 511 SPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 111111111 23778888999887 66667766543
No 388
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.58 E-value=2.1 Score=40.24 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=43.3
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeeeccc----cceeEEEEecCCCEEEEEcCC---CCCceeEEEEccCCceEEEee
Q 021648 24 SYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYLRYFK 95 (309)
Q Consensus 24 ~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~d~~~~~~~~~~~ 95 (309)
..+..++.|+.+.-.|..+|+.+....... +.+...-.. .+..++.++.. +.++.|..+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 456677789999999999999876544221 111110000 12344444321 236789999999999877653
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.56 E-value=2.7 Score=41.31 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=68.0
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeecccc--------ceeEEEEec----------------CCCEEEEEcCCCCCc
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKY--------GVDLVCFTS----------------HPTTVIYSSKNGWDE 78 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~~~~~s~~g~d~ 78 (309)
+..|..++.++.|.-.|..+|+.+-.+..+.. .+..+++.. .+..++..+. |+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence 45677777889999999999998876643321 012223321 1235555543 78
Q ss_pred eeEEEEccCCceEEEeeecccCEE-------------EEEecC--CCCeEEEecC----------CCcEEEeeCCCceee
Q 021648 79 SLRLLSLHDNKYLRYFKGHHDRVV-------------SLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ 133 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~~~v~-------------~v~~~~--~~~~l~s~s~----------Dg~v~~Wd~~~~~~~ 133 (309)
.+.-.|.++|+....+.. .+.|. .+.-.| .+..++.++. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 899999999998877632 22221 011112 1335555542 688999999999877
Q ss_pred eeee
Q 021648 134 GLLR 137 (309)
Q Consensus 134 ~~~~ 137 (309)
....
T Consensus 350 W~~~ 353 (764)
T TIGR03074 350 WAWD 353 (764)
T ss_pred eEEe
Confidence 6554
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.45 E-value=1.7 Score=38.51 Aligned_cols=244 Identities=14% Similarity=0.134 Sum_probs=103.3
Q ss_pred EcCCCceeeeeecccc-----ceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeE
Q 021648 39 DVTAATCLKTINSKKY-----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 113 (309)
Q Consensus 39 d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 113 (309)
|..||..+..+..... -...-||.++|+.+++++...-...+.+.|+++++.+.--.+-.+......++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 5566665544432221 12334788999988887654446677788999987554433322223345667877776
Q ss_pred EEecCCCcEEEeeCCCceeeeeeeecCc----eeEEECCCCcEEEEEE----C-------------------CEEEEEEC
Q 021648 114 ISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDDQGLVFAVAF----G-------------------GYIRMFDA 166 (309)
Q Consensus 114 ~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~-------------------~~i~~~d~ 166 (309)
+=....+.++--|+++.+.......+.. .......+...+++.. + ..|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 5554556788888888765444443321 1122233333333221 0 12222333
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC-----cEEEEECCC-CeEeEEeeecCCCCCccc-eEEECCC
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFR-GTLLSTYNVKPVSRNSTL-EASFSPE 239 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg-----~v~i~d~~~-~~~~~~~~~~~~~~~~~~-~~~~sp~ 239 (309)
++.+. ..++. ....+.-+-|||....+++-+-+| .-|||-+.+ +.......- ....... -=-|.||
T Consensus 176 ~tG~~--~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 176 KTGER--KVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPD 248 (386)
T ss_dssp TT--E--EEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TT
T ss_pred CCCce--eEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCC
Confidence 32111 11111 112344567888776666666554 136665433 333322211 1111111 1238999
Q ss_pred CCEEEEE-----cCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 240 GMFVISG-----SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 240 g~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
|..|.-- +.+..|.-.|..+++.-. +...+ ....+--++|++++|--+.|
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEE-EEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceE-EEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 9776542 335577788888875432 22222 23455568899998664443
No 391
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.87 E-value=0.79 Score=41.76 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=64.2
Q ss_pred EEEEccCCCE-------EEEEeCCCcEEEEECCC-CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 188 VVKFSNDGRL-------MLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 188 ~v~~s~dg~~-------l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.|.|.|+.++ -+.|-.+..|--.|++- |..+..-+.+......-.+..-.-...|+|.||.-|-|++||.-.
T Consensus 513 vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig 592 (776)
T COG5167 513 VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG 592 (776)
T ss_pred eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhc
Confidence 5666664321 23455555555557653 333322221111111112223334567999999999999999865
Q ss_pred CceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 260 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 260 ~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
.+....+++....|..+..+.+|+.+...+..
T Consensus 593 ~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 593 KRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred chhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 55555678888899999999999987777664
No 392
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.78 E-value=2.3 Score=36.35 Aligned_cols=218 Identities=16% Similarity=0.223 Sum_probs=117.0
Q ss_pred eEEEEecCCCEEEEEcCCCCCceeEEEEcc------CCce-EEEeee-----cccCEEEEEecCCCC------------e
Q 021648 57 DLVCFTSHPTTVIYSSKNGWDESLRLLSLH------DNKY-LRYFKG-----HHDRVVSLSLCSSKD------------C 112 (309)
Q Consensus 57 ~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~------~~~~-~~~~~~-----h~~~v~~v~~~~~~~------------~ 112 (309)
..++++|.+. ++.+.++ -+...+||.+ ..+. +-++.. -....+.+.|+.... .
T Consensus 26 WGia~~p~~~--~WVadng-T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 26 WGLSYRPGGP--FWVANTG-TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ceeEecCCCC--EEEecCC-cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4577777653 3444344 4678888876 1222 222221 234567777764332 3
Q ss_pred EEEecCCCcEEEeeCCCcee---eeeeeec----C--ceeEEEC--C-CCcEEEEE-ECCEEEEEECCCC--------Cc
Q 021648 113 FISGSLDRTVLLWDQRAEKC---QGLLRVQ----G--RPAAAYD--D-QGLVFAVA-FGGYIRMFDARKY--------EK 171 (309)
Q Consensus 113 l~s~s~Dg~v~~Wd~~~~~~---~~~~~~~----~--~~~~~~~--~-~~~~~~~~-~~~~i~~~d~~~~--------~~ 171 (309)
|+-++.||+|.-|...-... ...+.+. . ...++.. . ...++++- ..++|.+||-.-. ..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998532221 1111111 1 0111111 1 22344333 3588998884311 01
Q ss_pred -------CCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECC------
Q 021648 172 -------GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP------ 238 (309)
Q Consensus 172 -------~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp------ 238 (309)
.++.+..+.+.. -|....-.++++.=+.+-.-|.|-+||+ .|.+++++... ..-+..|.++..|
T Consensus 183 P~iPagyAPFnIqnig~~l-yVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTL-YVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEEECCeE-EEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCceeeeChhhhCCC
Confidence 122222222210 1111222444444455556678999997 47888776432 2235567777655
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEeecCCCC------CcEEEECC
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE------PPVIKWTP 280 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------v~~l~~~p 280 (309)
.|..|+-==-||+|.++|..+++.+..+..-++. +..|+|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5566665566999999999999988777654332 34577755
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.59 E-value=0.84 Score=39.37 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 021648 184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 263 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~ 263 (309)
..+..+..++||++++++..-.-..-||.-... -..+.. ....++..+.|+|++...+.+ ..|.|+.=+... ..
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~ 218 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DG 218 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cc
Confidence 346667788999988777555555567753211 122221 124567789999998887766 788888877211 22
Q ss_pred EEeec-------CCCCCcEEEECCCeeEEEEccceEEEee
Q 021648 264 ASWMS-------FDTEPPVIKWTPGSLMFVTGSSELSFWI 296 (309)
Q Consensus 264 ~~~~~-------~~~~v~~l~~~p~~~~l~s~~~d~~~~~ 296 (309)
.++.. -.-.+..++|.|++...+.|++..-+..
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S 258 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS 258 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe
Confidence 22221 1112577899999998888887643333
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.56 E-value=2.5 Score=40.11 Aligned_cols=204 Identities=15% Similarity=0.193 Sum_probs=99.4
Q ss_pred ceeEEEEccCCceEEEeee-cccCEEEEEecCCCCeEEEecCC------CcEEEeeCCCceeeeeeeecC-c-eeEEECC
Q 021648 78 ESLRLLSLHDNKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQG-R-PAAAYDD 148 (309)
Q Consensus 78 ~~i~~~d~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~D------g~v~~Wd~~~~~~~~~~~~~~-~-~~~~~~~ 148 (309)
..+..+|..+++-.....- +...-.+++.. ++...++||.| .++..+|++.++....-.+.. + ......-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 4788888877743222111 11122333333 45788999999 366788887776543222221 1 1111122
Q ss_pred CCcEEEE-EECC-----EEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCC------cEEEEECCCCe
Q 021648 149 QGLVFAV-AFGG-----YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG------HIHVLDSFRGT 216 (309)
Q Consensus 149 ~~~~~~~-~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg------~v~i~d~~~~~ 216 (309)
.+.++++ |.+| .+-.||.+..+=.... ......... -...-+|++.++||.++ .|..||+.+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 3444444 4553 5666765542100000 000001111 12334788999988654 46678877655
Q ss_pred EeEEeeecCCCCCcc-ceEEECCCCCEEEEEcCCC-----cEEEEECCCCceEEE-eecCCCCCcEEEECCCeeEEEEcc
Q 021648 217 LLSTYNVKPVSRNST-LEASFSPEGMFVISGSGDG-----SVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGS 289 (309)
Q Consensus 217 ~~~~~~~~~~~~~~~-~~~~~sp~g~~l~s~s~Dg-----~i~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~~~l~s~~ 289 (309)
-...-. ....+. ..++ .-+++.++.||.|+ ++..+|..+.+-... .+........++ .-++++.+.|+
T Consensus 456 W~~~~~---M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG 530 (571)
T KOG4441|consen 456 WTLIAP---MNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGG 530 (571)
T ss_pred eeecCC---cccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEec
Confidence 432111 111111 1122 23778888888887 377788877543222 112221111122 23567777777
Q ss_pred ce
Q 021648 290 SE 291 (309)
Q Consensus 290 ~d 291 (309)
.|
T Consensus 531 ~~ 532 (571)
T KOG4441|consen 531 FD 532 (571)
T ss_pred cc
Confidence 65
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.18 E-value=0.18 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=25.2
Q ss_pred CCeEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 021648 185 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 185 ~~~~v~~s~dg---~~l~~~~~dg~v~i~d~~~ 214 (309)
.++++.|||+. .+|+.+-.-|.|+|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36789999855 4888898999999999985
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.05 E-value=3.2 Score=34.92 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=63.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEE-CCCCeEeE-EeeecCCCCCccceEEECCCCCEEEEEc---CCCcEEEEECCC--
Q 021648 187 NVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVYAWSVRS-- 259 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~~dg~v~i~d-~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~l~s~s---~Dg~i~vwd~~~-- 259 (309)
..-.|+++|...+....+...+++. ...+.... .... +.....|..+.+||||..+|... .++.|.|=-+..
T Consensus 69 ~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 69 TRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred ccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 3446888988877777666666663 23333221 1111 11112688999999999888776 356777766532
Q ss_pred -C--ceE----EEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 260 -G--KEV----ASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 260 -~--~~~----~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
+ ..+ .........+..++|.+++.+++.+..
T Consensus 148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 2 111 111233457889999999998877665
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.98 E-value=2.9 Score=40.68 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=51.1
Q ss_pred CCCeEEEEccCCCEEEEEeCCCcEEEEECCC-----C-----eE--e-EEeee-----cCCCCCccceEEECCC---CCE
Q 021648 184 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-----G-----TL--L-STYNV-----KPVSRNSTLEASFSPE---GMF 242 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~-----~-----~~--~-~~~~~-----~~~~~~~~~~~~~sp~---g~~ 242 (309)
..|..|.+||+|+.++..|..|-+.+ .+.. + .. . .++.. .......+..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35778899999999999888665443 3211 1 10 1 11111 1112235678999996 589
Q ss_pred EEEEcCCCcEEEEECCCCc
Q 021648 243 VISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 243 l~s~s~Dg~i~vwd~~~~~ 261 (309)
|+.=..|+++|+||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997643
No 398
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.82 E-value=0.39 Score=39.45 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=52.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEe-eecC----------CCCCccceEEECCCCCEEEEEcCCCcEEEEE
Q 021648 188 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKP----------VSRNSTLEASFSPEGMFVISGSGDGSVYAWS 256 (309)
Q Consensus 188 ~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~----------~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd 256 (309)
.+.+..+++++++-+.+|.+++||+.+++.+... ...+ .....+..+.++.+|.-+++-+ +|..+.|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 3446678999999999999999999988766433 1111 1234566778888898888776 47889998
Q ss_pred CCCC
Q 021648 257 VRSG 260 (309)
Q Consensus 257 ~~~~ 260 (309)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7543
No 399
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.78 E-value=4.3 Score=35.53 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=73.2
Q ss_pred CCeEEEEccCCCEEEEEeCC------CcEEEEECCCCeEeEEeeecCC------------CCCccceEEECCCCCEEEEE
Q 021648 185 DANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPV------------SRNSTLEASFSPEGMFVISG 246 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~------------~~~~~~~~~~sp~g~~l~s~ 246 (309)
+..++++.++|.++++.-.+ ..|+.++.. |..+..+..... .....-.++++|||+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45567788899998888778 889888876 776665532211 11223368999999977766
Q ss_pred cCC-----C--c-------EEE--EECCC-CceEEEee--c-------CCCCCcEEEECCCeeEEEEcc-------ceEE
Q 021648 247 SGD-----G--S-------VYA--WSVRS-GKEVASWM--S-------FDTEPPVIKWTPGSLMFVTGS-------SELS 293 (309)
Q Consensus 247 s~D-----g--~-------i~v--wd~~~-~~~~~~~~--~-------~~~~v~~l~~~p~~~~l~s~~-------~d~~ 293 (309)
-+. + . +++ +|..+ ++....+. . ....++.+.+-|++++|+-=- ...+
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 443 2 1 455 44444 32333321 1 234678899999998776522 2477
Q ss_pred EeeecCCCc
Q 021648 294 FWIPDLSKL 302 (309)
Q Consensus 294 ~~~~~~~~~ 302 (309)
++..++...
T Consensus 245 i~~v~l~~a 253 (326)
T PF13449_consen 245 IYRVDLSDA 253 (326)
T ss_pred EEEEEcccc
Confidence 777776544
No 400
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.73 E-value=3.8 Score=34.67 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=111.9
Q ss_pred cCCCEEEEEcCCCCCceeEEEEc-cCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee-------
Q 021648 63 SHPTTVIYSSKNGWDESLRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG------- 134 (309)
Q Consensus 63 ~~~~~~~~~s~~g~d~~i~~~d~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~------- 134 (309)
..++.++.+.. +| +.++++ ...+..+.. +...|..+...++-+.|+.-+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEEC---CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 34567777754 34 888888 333333333 233499999998877666655 6999999975432222
Q ss_pred --------eee-ecCceeEE---ECCCCcEEEEEECCEEEEEECCCCCcCC-ceEEEeCCCCCCCeEEEEccCCCEEEEE
Q 021648 135 --------LLR-VQGRPAAA---YDDQGLVFAVAFGGYIRMFDARKYEKGP-FDIFSVGGDISDANVVKFSNDGRLMLLT 201 (309)
Q Consensus 135 --------~~~-~~~~~~~~---~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~v~~s~dg~~l~~~ 201 (309)
.+. ..+..... .......++++....|.+|......... .....+.- ...+..+++. +..++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence 110 01111111 1234467777778899999876521111 11222211 2456777777 5666666
Q ss_pred eCCCcEEEEECCCCeEeEEeeecCCC--------CCccceEEECCCCCEEEEEcCCCcEEEEECCCCceEE-EeecCCCC
Q 021648 202 TMEGHIHVLDSFRGTLLSTYNVKPVS--------RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTE 272 (309)
Q Consensus 202 ~~dg~v~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~ 272 (309)
..++ ..+.|+.++....-+...... ......+---+++.+|++- |..-..-|. .|+..+ ....-+..
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSA 230 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCc
Confidence 6444 567788866554433211100 0111122222455666543 333333333 444433 22223445
Q ss_pred CcEEEECCCeeEEEEccceEEEeeecC
Q 021648 273 PPVIKWTPGSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 273 v~~l~~~p~~~~l~s~~~d~~~~~~~~ 299 (309)
+..+++... -+++....-+.+|...-
T Consensus 231 p~~~~~~~p-yli~~~~~~iEV~~~~~ 256 (275)
T PF00780_consen 231 PQSVAYSSP-YLIAFSSNSIEVRSLET 256 (275)
T ss_pred hhEEEEECC-EEEEECCCEEEEEECcC
Confidence 566666332 22333333488886643
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=3.9 Score=34.76 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=33.2
Q ss_pred eeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec
Q 021648 94 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ 139 (309)
Q Consensus 94 ~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~ 139 (309)
+.|-++.+.++.|+|+.+.|.+......-.+|=...++.+.++...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~ 126 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT 126 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc
Confidence 3455666999999999998888877777666655566666665544
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.55 E-value=0.38 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=26.5
Q ss_pred cceEEEEeCCCC---CEEEEeeCCCcEEEEEcCC
Q 021648 12 GRISSMDFHKSS---SYLVTASDDESIRLYDVTA 42 (309)
Q Consensus 12 ~~V~~i~~s~~~---~~l~t~s~D~~v~iWd~~~ 42 (309)
|+|.+++|+|+. .+|+-+-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 5888888889999999975
No 403
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.40 E-value=0.6 Score=26.65 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCCEEEEE-cCCCcEEEEECCCCceEEEeecCCCCCcEEEE
Q 021648 238 PEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 278 (309)
Q Consensus 238 p~g~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 278 (309)
|++++|+++ -.+++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 677777665 4578999999999888777654 344555555
No 404
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=2.6 Score=38.01 Aligned_cols=99 Identities=11% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeE--EeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648 183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 183 ~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
...+.++.||+|.+.+|.--.+..|.+++....+... ..+.+ .....+....|+.+ +-+|-.+..| +-+|-+...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 3478999999999999999999999998863322221 11111 12234566778655 7777776655 777776443
Q ss_pred -ceEEEeecCCCCCcEEEECCCeeE
Q 021648 261 -KEVASWMSFDTEPPVIKWTPGSLM 284 (309)
Q Consensus 261 -~~~~~~~~~~~~v~~l~~~p~~~~ 284 (309)
+.++....|+..|+--.|.|+.+.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccce
Confidence 335555678888999999987653
No 405
>PRK10115 protease 2; Provisional
Probab=93.29 E-value=8.7 Score=37.49 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=69.0
Q ss_pred ceEEEEeCCCCCEEEEeeC-CC----cEEEEEcCCCceeee-eeccccceeEEEEecCCCEEEEEcCC---CCCceeEEE
Q 021648 13 RISSMDFHKSSSYLVTASD-DE----SIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLL 83 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~-D~----~v~iWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~---g~d~~i~~~ 83 (309)
.+..+.++|||++|+-+-. +| ++++-|+.+|+.+.. +..-. ..++|.++++.++++... .....+..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 4777889999998765432 22 577889888864322 22221 348999999888776542 123578888
Q ss_pred EccCC--ceEEEeeecccCEE-EEEecCCCCeEEEec---CCCcEEEeeC
Q 021648 84 SLHDN--KYLRYFKGHHDRVV-SLSLCSSKDCFISGS---LDRTVLLWDQ 127 (309)
Q Consensus 84 d~~~~--~~~~~~~~h~~~v~-~v~~~~~~~~l~s~s---~Dg~v~~Wd~ 127 (309)
++.++ +-...+........ .+..+.++++++..+ .++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88887 44555554444333 333344777544332 3467888884
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.29 E-value=1.3 Score=38.86 Aligned_cols=103 Identities=20% Similarity=0.353 Sum_probs=56.2
Q ss_pred CeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEee----ecCCCCCccceEEECCC----CCEEEEEcCC--------
Q 021648 186 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN----VKPVSRNSTLEASFSPE----GMFVISGSGD-------- 249 (309)
Q Consensus 186 ~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~sp~----g~~l~s~s~D-------- 249 (309)
...++|.|||+++++-- .|.|++++ ..+.....+. .......-...++|+|+ +...++-+..
T Consensus 4 P~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 36789999999887654 99999999 4455422211 11122334567899994 4433433422
Q ss_pred CcEEEEECCCC-------ce-EEEeec---CCCCCcEEEECCCeeEEEEccc
Q 021648 250 GSVYAWSVRSG-------KE-VASWMS---FDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 250 g~i~vwd~~~~-------~~-~~~~~~---~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
..|.-|..... +. +..+.. ....-..|+|.||+.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 24555555443 11 122222 1122355999999988877664
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.15 E-value=0.31 Score=40.99 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=47.7
Q ss_pred EECCCCCEEEEEcCC-----CcEEEEECCCC-ceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 235 SFSPEGMFVISGSGD-----GSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 235 ~~sp~g~~l~s~s~D-----g~i~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
.|||||++|++.-.| |.|-|||.+.+ +.+.++..|.=....+.|.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG 182 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG 182 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCc
Confidence 699999999887555 68999999764 4588899998888889999999988876653
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=4.2 Score=34.59 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 180 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 180 ~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+....+++++++|+-+.|.+-.....-.++=...|.++.+......+. .-.+.+.-+|+|+++--.+..++++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--pE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--PETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC--hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3444568999999999999888887776666566788888765443332 23578888999999999999999998876
Q ss_pred CceEEEe-----e----cC-CCCCcEEEECCCeeEEEEcc-ce-EEEeeec
Q 021648 260 GKEVASW-----M----SF-DTEPPVIKWTPGSLMFVTGS-SE-LSFWIPD 298 (309)
Q Consensus 260 ~~~~~~~-----~----~~-~~~v~~l~~~p~~~~l~s~~-~d-~~~~~~~ 298 (309)
...+..+ + .+ +...-.+||.|....|.-+- .+ ..++.+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 5332211 1 11 34455699999765444443 33 5555554
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=4.9 Score=34.08 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=112.1
Q ss_pred EEEeCCCCCE-EEEeeCCCc-EEEEEcCCCceeeeeeccccc--eeEEEEecCCCEEEEEcCCCCC---ceeEEEEccCC
Q 021648 16 SMDFHKSSSY-LVTASDDES-IRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWD---ESLRLLSLHDN 88 (309)
Q Consensus 16 ~i~~s~~~~~-l~t~s~D~~-v~iWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~s~~g~d---~~i~~~d~~~~ 88 (309)
.|.|+|.-.+ ++-+=.=|+ ..++|..+...+.++...+.. --.-+|++++..++..- ++.| +.|-+||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATE-ndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATE-NDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeec-CCCCCCCceEEEEecccc
Confidence 3555554332 333333333 356777766665554332211 12247889998777653 4433 57889998643
Q ss_pred -ceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEe-eCCCceeeeeeeecCceeEEECCCCcEEEEEECCEEEEEEC
Q 021648 89 -KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW-DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 166 (309)
Q Consensus 89 -~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~W-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 166 (309)
+.+..+..|--.-..+.+.+||+.++.+ +|-|+.- |+ ++....+. ...| +.++.-..+|.+.
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdf--gR~~lNld-------sMeP-Slvlld~atG~li---- 214 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDF--GRTELNLD-------SMEP-SLVLLDAATGNLI---- 214 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEe--CCceeccccc--Cccccchh-------hcCc-cEEEEeccccchh----
Confidence 3355566776667788899999988876 4555543 21 11100000 0001 1111110111100
Q ss_pred CCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEE----EEE-CCCCeEeEEeeecC----CCCCccceEEEC
Q 021648 167 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH----VLD-SFRGTLLSTYNVKP----VSRNSTLEASFS 237 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~----i~d-~~~~~~~~~~~~~~----~~~~~~~~~~~s 237 (309)
++ ..+....+...++-++..+||+.+..+-..|.-. +.- ...++.+..+.... ...+.+-+++.+
T Consensus 215 ---ek---h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 215 ---EK---HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred ---hh---ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 00 0001011223456677777887665544333210 000 12233333222111 012345567777
Q ss_pred CCCCEEEEEcCCC-cEEEEECCCCceEEE
Q 021648 238 PEGMFVISGSGDG-SVYAWSVRSGKEVAS 265 (309)
Q Consensus 238 p~g~~l~s~s~Dg-~i~vwd~~~~~~~~~ 265 (309)
-+...++..|-.| ..-+||..++..+..
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 6666666655554 677899999987654
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.91 E-value=8.5 Score=37.25 Aligned_cols=104 Identities=10% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCEEEEEeCCCcEEEEECCC-------C----eE------eEE-eeecCCCCCccceEEEC--CCCCEEEEEcCCCcEE
Q 021648 194 DGRLMLLTTMEGHIHVLDSFR-------G----TL------LST-YNVKPVSRNSTLEASFS--PEGMFVISGSGDGSVY 253 (309)
Q Consensus 194 dg~~l~~~~~dg~v~i~d~~~-------~----~~------~~~-~~~~~~~~~~~~~~~~s--p~g~~l~s~s~Dg~i~ 253 (309)
+.+.|+.+.+||.|.+|...+ . .. +.. +.. .....+|.++++ ...++||.++.-..|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEE
Confidence 557888999999999996411 0 00 000 111 113467889998 7889999998888898
Q ss_pred EEECCCC--ce-EEEeecCCCCCcEEEECCCe---e---EEEEccceEEEeeecC
Q 021648 254 AWSVRSG--KE-VASWMSFDTEPPVIKWTPGS---L---MFVTGSSELSFWIPDL 299 (309)
Q Consensus 254 vwd~~~~--~~-~~~~~~~~~~v~~l~~~p~~---~---~l~s~~~d~~~~~~~~ 299 (309)
||-.... +. ...-..|...|++|+|-++. . .+++++-...+|.++.
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8876542 11 11112356789999998854 2 5555555555555444
No 411
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.88 E-value=7.5 Score=35.66 Aligned_cols=106 Identities=11% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeec----CCCCCccceEEECCCC------CEEEEEc-----
Q 021648 183 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEG------MFVISGS----- 247 (309)
Q Consensus 183 ~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~sp~g------~~l~s~s----- 247 (309)
......++|.|||++|++--..|+|++++...+......... .....-...++|+|+- ++|...-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 344578899999998887766799999986554322111111 0113446789999874 3443331
Q ss_pred -----CCCcEEEEECCCC-------ce-EEEee---cCCCCCcEEEECCCeeEEEEccc
Q 021648 248 -----GDGSVYAWSVRSG-------KE-VASWM---SFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 248 -----~Dg~i~vwd~~~~-------~~-~~~~~---~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
....|.-|.+... +. +..++ .|. -..|+|.||+.++++.+.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence 1234544555321 11 11111 122 356899999987776554
No 412
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.79 E-value=0.49 Score=38.83 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=46.6
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEe------e--------cCCCCCcEEEECCCeeEEEEcc-ceEEEeeecC
Q 021648 235 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASW------M--------SFDTEPPVIKWTPGSLMFVTGS-SELSFWIPDL 299 (309)
Q Consensus 235 ~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~------~--------~~~~~v~~l~~~p~~~~l~s~~-~d~~~~~~~~ 299 (309)
.+..++.++++...+|.+++||+.+++.+... . .....|..+..+.+|.-+++=+ .+.+.|.+++
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 35568999999999999999999988764322 1 2334677788888887665544 3566666655
Q ss_pred C
Q 021648 300 S 300 (309)
Q Consensus 300 ~ 300 (309)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=4.6 Score=32.65 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=81.2
Q ss_pred CceeEEEEccCCceEEEeeecccCEEEEEec--CCCCeEEEecCCCcEEEeeCCCceeeeeeeecCce-eEEECCCCcEE
Q 021648 77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVF 153 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (309)
...||+||+.+++.+..-.-....+.+=-.. .|.-+.+|- .||.-..+|.++-++...+..++.- ..+++ +..++
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw-~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d-~~~Li 144 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW-KEGVAFKYDADTLEELGRFSYEGEGWGLTSD-DKNLI 144 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe-ccceeEEEChHHhhhhcccccCCcceeeecC-CcceE
Confidence 4679999999988765433221222221111 121123333 3666677777665555555444432 12222 22233
Q ss_pred EEEECCEEEEEECCCCCcCCceEEEeCCC-CCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCC-----
Q 021648 154 AVAFGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----- 227 (309)
Q Consensus 154 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----- 227 (309)
.+....+++.-|...+........+..+. ....+.+.+ =||..+|---.+..|...|..+|+....+...+..
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~ 223 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL 223 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence 22223345554554433211111122211 111222221 16776666666667777788888887766532211
Q ss_pred ----CCccceEEECCCC-CEEEEE
Q 021648 228 ----RNSTLEASFSPEG-MFVISG 246 (309)
Q Consensus 228 ----~~~~~~~~~sp~g-~~l~s~ 246 (309)
.+....+++-|++ ++++||
T Consensus 224 ~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 224 DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccccceeecCcCCeEEEec
Confidence 1233457888876 666665
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=92.53 E-value=8.9 Score=35.63 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=50.7
Q ss_pred CCCEEEEeeCCC-----cEEEEEcCCCceeee--eeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEe
Q 021648 22 SSSYLVTASDDE-----SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 94 (309)
Q Consensus 22 ~~~~l~t~s~D~-----~v~iWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~ 94 (309)
++.+++.||.++ ++-.||..+++-... +....... .+ ...++...+.+..++ ...+..||..+++=.. +
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~-~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPN-PTSVERWFHGDAAWVN-M 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCC-CCceEEEECCCCeEEE-C
Confidence 345667887653 466778776543221 11111111 11 123443333332211 2457778876543111 1
Q ss_pred eecc-cCEEEEEecCCCCeEEEecCCC---cEEEeeCCCceeee
Q 021648 95 KGHH-DRVVSLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQG 134 (309)
Q Consensus 95 ~~h~-~~v~~v~~~~~~~~l~s~s~Dg---~v~~Wd~~~~~~~~ 134 (309)
..-. .........-+++..+.||.++ ++..||+++++...
T Consensus 347 ~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 347 PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 1111 1111111123567778877654 57788988776543
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.34 E-value=4.1 Score=36.32 Aligned_cols=102 Identities=12% Similarity=0.202 Sum_probs=55.3
Q ss_pred CCCeEEEEccCCCEEEEEe-----------CCC-cEEEEECCC--CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC
Q 021648 184 SDANVVKFSNDGRLMLLTT-----------MEG-HIHVLDSFR--GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 249 (309)
Q Consensus 184 ~~~~~v~~s~dg~~l~~~~-----------~dg-~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D 249 (309)
.....+++.++|+++++-. ..+ .|.+++... |.......... .-.....+++.++| .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEE-eCCC
Confidence 4456789999999888753 223 787776543 32211111111 11234568898998 434 4444
Q ss_pred CcEEEE-ECCC-------CceEE-Eeec----CCCCCcEEEECCCeeEEEEcc
Q 021648 250 GSVYAW-SVRS-------GKEVA-SWMS----FDTEPPVIKWTPGSLMFVTGS 289 (309)
Q Consensus 250 g~i~vw-d~~~-------~~~~~-~~~~----~~~~v~~l~~~p~~~~l~s~~ 289 (309)
. |..+ |... .+.+. .+.. +......++|.|||++.++-+
T Consensus 91 ~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred e-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4 4434 5421 11122 2322 123467899999998776654
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.16 E-value=3.9 Score=38.14 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=69.5
Q ss_pred CCCeEEEEccCC----CEEEEEeCCCcEEEEECC-----CCeEeEEeeecCCCCCcc--ceEEECCCCCEEEEEcCCCcE
Q 021648 184 SDANVVKFSNDG----RLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNST--LEASFSPEGMFVISGSGDGSV 252 (309)
Q Consensus 184 ~~~~~v~~s~dg----~~l~~~~~dg~v~i~d~~-----~~~~~~~~~~~~~~~~~~--~~~~~sp~g~~l~s~s~Dg~i 252 (309)
..|..+.++|-+ ..+++--..++|.||.+- +++.+......-...-++ -.+-|+|....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 346667777643 356666778899999863 233333222110001111 136799998887777666655
Q ss_pred EEEECCC-CceEEEeecCCCCCcEEEECCCeeEE-EEccceEEEeeec
Q 021648 253 YAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSELSFWIPD 298 (309)
Q Consensus 253 ~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l-~s~~~d~~~~~~~ 298 (309)
.+.+++. ...++.=..-.+.|.|.+|.+||+.| +..++-++.++||
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 6666643 23343322445689999999999654 5556677777775
No 417
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.14 E-value=11 Score=36.77 Aligned_cols=193 Identities=15% Similarity=0.284 Sum_probs=96.2
Q ss_pred ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc----e-e--------eeeeee---------cCc--------eeEE
Q 021648 96 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----K-C--------QGLLRV---------QGR--------PAAA 145 (309)
Q Consensus 96 ~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~----~-~--------~~~~~~---------~~~--------~~~~ 145 (309)
.-.+.|.+.+|+.|.+.+.....+++|.+.|..-. . . -..+++ .++ +...
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp 189 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMP 189 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCc
Confidence 34567888899999886555555778887763111 0 0 000110 000 0000
Q ss_pred E-CCCCcEEEEEECCEEEEE--ECC--------CCCcCCceEEEeCCCC--------CCCeEEEEccCCCEEEEEeCCC-
Q 021648 146 Y-DDQGLVFAVAFGGYIRMF--DAR--------KYEKGPFDIFSVGGDI--------SDANVVKFSNDGRLMLLTTMEG- 205 (309)
Q Consensus 146 ~-~~~~~~~~~~~~~~i~~~--d~~--------~~~~~~~~~~~~~~~~--------~~~~~v~~s~dg~~l~~~~~dg- 205 (309)
+ -+-|.+.++-.+..+..| |.. ...+..+.+++-.|.. .....+.+-|+|..+++.+.||
T Consensus 190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~ 269 (1243)
T COG5290 190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGC 269 (1243)
T ss_pred ccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCC
Confidence 1 123456666666677777 421 1112234444433221 2224477899999999988766
Q ss_pred ----cEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce-EEEeecCCCCCcEEEECC
Q 021648 206 ----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTP 280 (309)
Q Consensus 206 ----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~~p 280 (309)
.|..+.. .|-.-..+............++|+..... .+.+....+.+|-..+..- ++.- -.-..+.-+.|+|
T Consensus 270 ~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~v-lav~~~n~~~lwttkNyhWYLK~e-~~ip~~s~vkwhp 346 (1243)
T COG5290 270 STSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTV-LAVAEGNLLKLWTTKNYHWYLKVE-RQIPGISYVKWHP 346 (1243)
T ss_pred CCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHH-HHHhhcceEEEEEccceEEEEEEe-ecCCCcceeeecc
Confidence 3555542 22111111110001112233556544433 3344567799999877432 2221 1223566688999
Q ss_pred C--eeEEEEccce
Q 021648 281 G--SLMFVTGSSE 291 (309)
Q Consensus 281 ~--~~~l~s~~~d 291 (309)
. ..++.+++.-
T Consensus 347 e~~nTl~f~d~~~ 359 (1243)
T COG5290 347 EEKNTLLFRDGER 359 (1243)
T ss_pred ccCcEEEEecCCe
Confidence 5 3566665553
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.83 E-value=8.4 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.403 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEE---e-ecCCCCCcEEEECCCeeEEEEccceEEEe
Q 021648 239 EGMFVISGSGDGSVYAWSVRSGKEVAS---W-MSFDTEPPVIKWTPGSLMFVTGSSELSFW 295 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~~~~~~~---~-~~~~~~v~~l~~~p~~~~l~s~~~d~~~~ 295 (309)
.|.++++.-..+.|....+.+...+.. + ......+..+++.|||.++++...+.+||
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 556777776677888888765533322 2 23444688999999999888876655554
No 419
>PHA03098 kelch-like protein; Provisional
Probab=91.78 E-value=12 Score=35.31 Aligned_cols=23 Identities=4% Similarity=0.248 Sum_probs=16.4
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCc
Q 021648 239 EGMFVISGSGD-----GSVYAWSVRSGK 261 (309)
Q Consensus 239 ~g~~l~s~s~D-----g~i~vwd~~~~~ 261 (309)
+++.++.||.+ ..+.+||..+.+
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 67777777765 468888887643
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.21 E-value=16 Score=35.79 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=26.2
Q ss_pred cccCEEEEEecCC---CCeEEEecCCCcEEEeeCCC
Q 021648 97 HHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRA 129 (309)
Q Consensus 97 h~~~v~~v~~~~~---~~~l~s~s~Dg~v~~Wd~~~ 129 (309)
+...|..+.|+|. +.+|+.=..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 4457889999985 46777777899999999864
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.12 E-value=3 Score=37.69 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=53.1
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC----CC----------------CC-EE
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS----PE----------------GM-FV 243 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s----p~----------------g~-~l 243 (309)
.+..++.+|++++.++...-|+|.++|..++..+.-.+... . -.+.|- +. .. .+
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR---d--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR---D--AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc---c--ceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 46778999999998888778999999998877665433211 0 011221 11 11 22
Q ss_pred EEEcCCCcEEEEECCCCceEEEeec
Q 021648 244 ISGSGDGSVYAWSVRSGKEVASWMS 268 (309)
Q Consensus 244 ~s~s~Dg~i~vwd~~~~~~~~~~~~ 268 (309)
+=+-.-|.|.||.++.+.++..+.-
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEe
Confidence 3445678999999999999887753
No 422
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.92 E-value=8.4 Score=32.15 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=62.2
Q ss_pred EEccCCCEEEEEeC-C--CcEEEEECCC---CeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCC-cEEEEECCC-Cc
Q 021648 190 KFSNDGRLMLLTTM-E--GHIHVLDSFR---GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRS-GK 261 (309)
Q Consensus 190 ~~s~dg~~l~~~~~-d--g~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg-~i~vwd~~~-~~ 261 (309)
.+-|||+++.+|+. + ..+++++.-. .....+....-.....--.+.--|||+.|+.||.+. +...|.-.. ..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 36689999998875 2 3688888643 111111100001111111234458999999998885 344454422 11
Q ss_pred eEEEe--ec------CCCCCcEEEECCCeeEEEEccceEEEeeecCC
Q 021648 262 EVASW--MS------FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 300 (309)
Q Consensus 262 ~~~~~--~~------~~~~v~~l~~~p~~~~l~s~~~d~~~~~~~~~ 300 (309)
....+ .. ..---+-+-..|+|++|+.+..+..++.+.-.
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n 199 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN 199 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence 11111 11 01123457778999999999988888777544
No 423
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.86 E-value=0.47 Score=44.77 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=28.9
Q ss_pred cceEEEEeCC----CCCEEEEeeCCCcEEEEEcCCCceeeee
Q 021648 12 GRISSMDFHK----SSSYLVTASDDESIRLYDVTAATCLKTI 49 (309)
Q Consensus 12 ~~V~~i~~s~----~~~~l~t~s~D~~v~iWd~~~~~~~~~~ 49 (309)
+.+.++++++ +..+|+|.+.|+++|+||+.++.|+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455666666 6789999999999999999999997654
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.50 E-value=1.6 Score=41.27 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCC----CeEeEEeeecCC-------------------CCCccceEEECC----CCCEEEE
Q 021648 193 NDGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVKPV-------------------SRNSTLEASFSP----EGMFVIS 245 (309)
Q Consensus 193 ~dg~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~-------------------~~~~~~~~~~sp----~g~~l~s 245 (309)
++...++.+..||.+..+.... +........... .......++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777777888777776543 222222111000 112234456666 7789999
Q ss_pred EcCCCcEEEEECCCCceEEEe
Q 021648 246 GSGDGSVYAWSVRSGKEVASW 266 (309)
Q Consensus 246 ~s~Dg~i~vwd~~~~~~~~~~ 266 (309)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.05 E-value=12 Score=32.41 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEE-CCCCeEeEEeeecC-CCCCccceEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 262 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d-~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~ 262 (309)
.+..+.|+|++.+.+.+ ..|.++.=+ ....+......... .....+..++|.|++...|+|+.. ++.+ ....|+.
T Consensus 188 riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~-S~DgGkt 264 (302)
T PF14870_consen 188 RIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLV-STDGGKT 264 (302)
T ss_dssp -EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEE-ESSTTSS
T ss_pred eehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEE-eCCCCcc
Confidence 45677888887765544 777877765 22222221111111 112236789999998887777654 3433 3333332
Q ss_pred ---EEEeecCCCCCcEEEECCCeeEEEEccceE
Q 021648 263 ---VASWMSFDTEPPVIKWTPGSLMFVTGSSEL 292 (309)
Q Consensus 263 ---~~~~~~~~~~v~~l~~~p~~~~l~s~~~d~ 292 (309)
...-...++....+.|.++.+.|+-|...+
T Consensus 265 W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 265 WQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp -EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred ceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 222223456788899988888998887653
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.98 E-value=7.2 Score=32.18 Aligned_cols=100 Identities=10% Similarity=0.116 Sum_probs=63.3
Q ss_pred EEEeCCCCCE-EEEeeCCCcEEEEE--cCCCce-----eeeeec---c-ccceeEEEEecCCCEEEEEcCCCCCceeEEE
Q 021648 16 SMDFHKSSSY-LVTASDDESIRLYD--VTAATC-----LKTINS---K-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 83 (309)
Q Consensus 16 ~i~~s~~~~~-l~t~s~D~~v~iWd--~~~~~~-----~~~~~~---~-~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~ 83 (309)
.++|+.+.+. -.+-+.+-+|.-|| ..+|.. +..++- . ......+++...|...+++- + -++|.-.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-n--g~~V~~~ 238 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-N--GGTVQKV 238 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-c--CcEEEEE
Confidence 5778876654 47778899999998 445532 222221 1 11122344444555444443 2 3589999
Q ss_pred EccCCceEEEeeecccCEEEEEecCC-CC-eEEEecC
Q 021648 84 SLHDNKYLRYFKGHHDRVVSLSLCSS-KD-CFISGSL 118 (309)
Q Consensus 84 d~~~~~~~~~~~~h~~~v~~v~~~~~-~~-~l~s~s~ 118 (309)
|..+|+.+..++-....|++++|-.. -. +.+|+..
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99999999999988999999999743 22 4455544
No 427
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=9.4 Score=30.93 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=92.3
Q ss_pred CCCeEEEecC--CCcEEEeeCCCceeeeeeeecCceeEEEC-----CCCcEEEEE-ECCEEEEEECCCCCcCCceEEEeC
Q 021648 109 SKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYD-----DQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVG 180 (309)
Q Consensus 109 ~~~~l~s~s~--Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~ 180 (309)
++.++.|.+. ...|+.||+++++.+....... + ..+. -...+.... .++.-..+|.+.++ .+..+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~-~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~--~lg~~~y~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D-TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE--ELGRFSYE 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-c-cccccceeeccceEEEEEeccceeEEEChHHhh--hhcccccC
Confidence 4456666664 4589999999887665443331 0 0110 112233333 35666677765432 11122222
Q ss_pred CCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee--cCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 181 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 181 ~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
|+ .=....|++.+.++....+++.-|+.+-....+... ..........+.| -||...|-.-.+..|-..+..
T Consensus 131 Ge-----GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 131 GE-----GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred Cc-----ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 21 123345666677777677777767654333332221 1111222334444 367777777666777777777
Q ss_pred CCceEEEe------------ecCCCCCcEEEECCCe-eEEEEccc
Q 021648 259 SGKEVASW------------MSFDTEPPVIKWTPGS-LMFVTGSS 290 (309)
Q Consensus 259 ~~~~~~~~------------~~~~~~v~~l~~~p~~-~~l~s~~~ 290 (309)
+|+.++.+ ..|..-.+.+|+-|++ +++++|-.
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 77765433 1233356779999986 78888753
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=2.6 Score=38.07 Aligned_cols=100 Identities=17% Similarity=0.343 Sum_probs=67.0
Q ss_pred CCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCcee----eeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEc
Q 021648 10 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 85 (309)
Q Consensus 10 h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~ 85 (309)
-.|+|.+|+||+|.+.||.-=.|++|.+.+....+.. ++-......+...+|+.+ ..++.....| +.+|-.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G----~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG----IEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC----eEEEEE
Confidence 4679999999999999999999999999987422221 122223334666677655 4555554333 555554
Q ss_pred cC-CceEEEeeecccCEEEEEecCCCCeEE
Q 021648 86 HD-NKYLRYFKGHHDRVVSLSLCSSKDCFI 114 (309)
Q Consensus 86 ~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~ 114 (309)
.. ...++..+.|...|+--.|+++.+.+.
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEe
Confidence 33 234566677888899989999877433
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.78 E-value=7.2 Score=35.33 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=38.8
Q ss_pred EecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeeecc
Q 021648 6 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK 52 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~ 52 (309)
.|......+.+|..+|++++.|....=|.|.|+|+.++..++.+++=
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 34555667899999999999888877889999999999888877653
No 430
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.60 E-value=28 Score=34.79 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred CeEEEEccC-CCEEEEEeC----------CCcEEEEECCCCeEeEEeeecCCCCCccceE-EECCCCCEEEEEcCCCcEE
Q 021648 186 ANVVKFSND-GRLMLLTTM----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDGSVY 253 (309)
Q Consensus 186 ~~~v~~s~d-g~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~sp~g~~l~s~s~Dg~i~ 253 (309)
+.++.|..| +.+++.|+. .|.|.+|....+..+....-+ .-.+.+.++ .| +|+++|.= ...|+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f--ngkllA~I--n~~vr 851 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF--NGKLLAGI--NQSVR 851 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh--CCeEEEec--CcEEE
Confidence 344457666 677777752 367777776552222211100 112333332 23 67776654 46799
Q ss_pred EEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 254 AWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 254 vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
+|++.+.+.+..--.|...+..+...-.+..++.|..
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeec
Confidence 9999887665544445555666666555656655554
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.63 E-value=1.3 Score=43.22 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=47.1
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccc-----------eEEECCCCCEEEEEcCCCcEEEEECC-
Q 021648 191 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-----------EASFSPEGMFVISGSGDGSVYAWSVR- 258 (309)
Q Consensus 191 ~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~sp~g~~l~s~s~Dg~i~vwd~~- 258 (309)
|-++.-++..+-.++.|++....+... .-+.. |...+. -...||||+.+|++..||.++.|.+.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs---Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRS---HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-HHHHh---cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 334556666777788888765433221 11111 222222 23479999999999999988877753
Q ss_pred ----CCceEEEeecCCC
Q 021648 259 ----SGKEVASWMSFDT 271 (309)
Q Consensus 259 ----~~~~~~~~~~~~~ 271 (309)
..+++..++.|.+
T Consensus 267 ~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eccccHhhhhccCCCCC
Confidence 3345666777773
No 432
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.99 E-value=20 Score=32.61 Aligned_cols=30 Identities=17% Similarity=0.478 Sum_probs=24.7
Q ss_pred ccceEEECCCCCEEEEEcCCCcEEEEECCC
Q 021648 230 STLEASFSPEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 230 ~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+..++..+..+.+++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 377888888889999999999999999974
No 433
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.63 E-value=25 Score=32.00 Aligned_cols=50 Identities=26% Similarity=0.149 Sum_probs=34.2
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEeecCCCCCcEEEECCCeeEEEEccce
Q 021648 241 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 291 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d 291 (309)
.+|..=|.||.+.+++-+.-.....++. ---+.-++|.|....|+++++.
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence 4666669999999999876543333433 2234558888887777777765
No 434
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.60 E-value=18 Score=30.37 Aligned_cols=149 Identities=18% Similarity=0.241 Sum_probs=77.2
Q ss_pred CEEEEEecCCCCeEEEec---CCCcEEEeeCCCceeeeeeeecCceeEEECCCCcEEEEEEC-CEEEEEE-CCCCCcCCc
Q 021648 100 RVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFD-ARKYEKGPF 174 (309)
Q Consensus 100 ~v~~v~~~~~~~~l~s~s---~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d-~~~~~~~~~ 174 (309)
.+.+.+++++++.++... ....+.++..... ....+.........+++.+.+.+...+ ...+++. .........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 578889999998766554 2334555543222 111111111222345566777766543 3444442 221111111
Q ss_pred eEEEeCCCCCCCeEEEEccCCCEEEEEe---CCCcEEEEECC---CC---eEeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648 175 DIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLLSTYNVKPVSRNSTLEASFSPEGMFVIS 245 (309)
Q Consensus 175 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~---~dg~v~i~d~~---~~---~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s 245 (309)
.+... .....|..+.+||||..++.-. .+++|.+=-+. .+ .+.............+..++|.+++..++.
T Consensus 104 ~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 104 EVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred Eeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11111 1111689999999999887765 35677664321 22 111122222222346678999999988877
Q ss_pred EcCCC
Q 021648 246 GSGDG 250 (309)
Q Consensus 246 ~s~Dg 250 (309)
+...+
T Consensus 183 ~~~~~ 187 (253)
T PF10647_consen 183 GRSAG 187 (253)
T ss_pred eCCCC
Confidence 75544
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=85.77 E-value=24 Score=31.03 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=73.4
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcE-EEEEcCCCceeeeee-ccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCC
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESI-RLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 88 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v-~iWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~ 88 (309)
.+.+.++.+.|++.+++++. .|.+ +.+|- .++.-.... .....+..+.+.+++..++++. .+.+++-.-..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCCC
Confidence 45688999999887776664 4443 33332 223222222 2234567777888777666553 334432223333
Q ss_pred ceEEEeeec----ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-c----CceeEEECCCCcEEEEEECC
Q 021648 89 KYLRYFKGH----HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q----GRPAAAYDDQGLVFAVAFGG 159 (309)
Q Consensus 89 ~~~~~~~~h----~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~ 159 (309)
+.-.....+ ...+.++.+.+++.. +.++.+|.+.. ....++.-..++. . ......+.+++..++++..|
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 321111111 134778888887654 45556776653 3333322111111 1 11123444555666667666
Q ss_pred EEEEEE
Q 021648 160 YIRMFD 165 (309)
Q Consensus 160 ~i~~~d 165 (309)
.|--++
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 665543
No 436
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.67 E-value=44 Score=33.12 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=45.0
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeeeccccce---------e----EEEEec--CCCEEEEEcCC-------CCCcee
Q 021648 23 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGV---------D----LVCFTS--HPTTVIYSSKN-------GWDESL 80 (309)
Q Consensus 23 ~~~l~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v---------~----~~~~~~--~~~~~~~~s~~-------g~d~~i 80 (309)
+.++..++.|+.+.-.|.++|+.+..+.... .+ . ...-.| .+..++.++.. ..++.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 3477788889999999999999886553211 00 0 000001 12345554321 125789
Q ss_pred EEEEccCCceEEEee
Q 021648 81 RLLSLHDNKYLRYFK 95 (309)
Q Consensus 81 ~~~d~~~~~~~~~~~ 95 (309)
+-+|.++|+.+..+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999988775
No 437
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.42 E-value=40 Score=32.48 Aligned_cols=156 Identities=12% Similarity=0.167 Sum_probs=84.9
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceee--eeecc-ccceeEEEEecC------CCEEEEEcC-CCCCcee
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TINSK-KYGVDLVCFTSH------PTTVIYSSK-NGWDESL 80 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~--~~~~~-~~~v~~~~~~~~------~~~~~~~s~-~g~d~~i 80 (309)
+..|-.|.|.++++.++..-..|.|.+||.+.+.... .+... ...+..-+|.++ ...++..+. .+..-..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678899999999999999999999999993222111 22111 111111122221 223333332 2334567
Q ss_pred EEEEcc-CCceEEEee---ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeecC----c---eeEEECCC
Q 021648 81 RLLSLH-DNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----R---PAAAYDDQ 149 (309)
Q Consensus 81 ~~~d~~-~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~---~~~~~~~~ 149 (309)
|++.+. ....+..+. -+........|+.+...|.-- .++++.+|++-.-+....+.++. . ......++
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 888871 122223332 222334445566543333332 68899999986666555555441 1 11122344
Q ss_pred CcEEEEEECCEEEEEECC
Q 021648 150 GLVFAVAFGGYIRMFDAR 167 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~ 167 (309)
...+..+.++.|++.|+.
T Consensus 288 ~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 288 PNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred CCeEEEEcCCEEEEEeeh
Confidence 445556778899999964
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.28 E-value=42 Score=32.59 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=87.3
Q ss_pred CcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE---EeeecccCEEEEEecCC
Q 021648 33 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR---YFKGHHDRVVSLSLCSS 109 (309)
Q Consensus 33 ~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~---~~~~h~~~v~~v~~~~~ 109 (309)
-.|+|++. +|..+..+.-.+..+-...|+.+...++. .. |+++.+|++....... -+......|..+.+..+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k---~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-QK---DGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-ec---cceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 45888886 46666555443334555666665554444 33 7899999985432111 01222334666666556
Q ss_pred CCeEEEecCCCcEEEeeCCCceeeeeeeecC----ceeEEECCCCcEEE--EEECCE--EEEEECCCCCcCCceEEEeCC
Q 021648 110 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQGLVFA--VAFGGY--IRMFDARKYEKGPFDIFSVGG 181 (309)
Q Consensus 110 ~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~--i~~~d~~~~~~~~~~~~~~~~ 181 (309)
|-.+.+.+ +.-+.+-+.+.......-..+. ..+....+++.... ...+-. ..++.... .......+..
T Consensus 139 GVavlt~~-g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~---~~~q~~~~~~ 214 (829)
T KOG2280|consen 139 GVAVLTVS-GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEE---SRVQLHALSW 214 (829)
T ss_pred ceEEEecC-CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceec---ccccccccCC
Confidence 65555543 2223333332221111111111 11222222211111 111100 01111100 0001111111
Q ss_pred CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeee
Q 021648 182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 223 (309)
Q Consensus 182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 223 (309)
..+.+.-+++||+.++|+.-...|.|.+.+....+.+.++++
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 224566788999999999999999999988776666666553
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.87 E-value=29 Score=33.27 Aligned_cols=110 Identities=9% Similarity=0.123 Sum_probs=65.0
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCceeeeee-ccccceeEEEEe--cCCCEEEEEcCCCCCceeEEEEcc---
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFT--SHPTTVIYSSKNGWDESLRLLSLH--- 86 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~s~~g~d~~i~~~d~~--- 86 (309)
..+-+.-+.-++..+.-+.-.++.|||...+.....-. .....|..+.|. |+++.+++.. ..+.|.++.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchh
Confidence 34445555545554444455688999998776432221 234457777665 4566666653 46778877532
Q ss_pred --CCc----eEEE--eeecc-cCEEEEEecCCCCeEEEecCCCcEEEeeC
Q 021648 87 --DNK----YLRY--FKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQ 127 (309)
Q Consensus 87 --~~~----~~~~--~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~ 127 (309)
+.. .++. +..|+ .+|.+..|.++|..++.++ ..+.+.|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111 1222 34455 5799999999997666553 46666663
No 440
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.65 E-value=5.7 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCCCEE-EEeeCCCcEEEEEcCCCceeeeeecc
Q 021648 21 KSSSYL-VTASDDESIRLYDVTAATCLKTINSK 52 (309)
Q Consensus 21 ~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~ 52 (309)
|++++| ++.-.+++|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 566655 44556889999999888877776653
No 441
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=4.3 Score=40.77 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=66.7
Q ss_pred EEEEccCCCEEEEE--eCCCcEEEEECCCCeEeE-----Eeeec---CCCCCccceEEECCCC-CEEEEEcCCCcEEEEE
Q 021648 188 VVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLS-----TYNVK---PVSRNSTLEASFSPEG-MFVISGSGDGSVYAWS 256 (309)
Q Consensus 188 ~v~~s~dg~~l~~~--~~dg~v~i~d~~~~~~~~-----~~~~~---~~~~~~~~~~~~sp~g-~~l~s~s~Dg~i~vwd 256 (309)
....++|++..++- +.+..|+.||+++-+.-. .+..+ -....-..++.|+|.- ...|....|+.|+|..
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~ 184 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS 184 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence 34455666554433 333478889986532211 11100 0112233467788853 4567778899999988
Q ss_pred CCCCceEEEeecCCCCCcEEEECCCeeEEEEccce--EEEeeecCC
Q 021648 257 VRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 300 (309)
Q Consensus 257 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~d--~~~~~~~~~ 300 (309)
+.-.....+-.......++++|+|.|++++.|... ..=+.|.|.
T Consensus 185 ~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 185 TKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 85543332222345678999999999999998864 222556554
No 442
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.49 E-value=52 Score=33.74 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=25.7
Q ss_pred cceEEEEeCCCCCEEEEeeCCCcEEEEEcC
Q 021648 12 GRISSMDFHKSSSYLVTASDDESIRLYDVT 41 (309)
Q Consensus 12 ~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~ 41 (309)
..-..++|+|...++|-+..+|.++++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 355678999999999999999999999653
No 443
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=79.78 E-value=38 Score=30.87 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=57.2
Q ss_pred EEEeCCCCCEEEEee--------------------CCCcEEEEEcCCCceeeeeeccccc--eeEEEEecCCC--EEEEE
Q 021648 16 SMDFHKSSSYLVTAS--------------------DDESIRLYDVTAATCLKTINSKKYG--VDLVCFTSHPT--TVIYS 71 (309)
Q Consensus 16 ~i~~s~~~~~l~t~s--------------------~D~~v~iWd~~~~~~~~~~~~~~~~--v~~~~~~~~~~--~~~~~ 71 (309)
..-+.|..+.++|.+ +-.++.+||..+.+.++++.-.... ..-+-|..+++ .-+++
T Consensus 185 Dfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 185 DFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp -EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEE
T ss_pred CeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEE
Confidence 344566666676654 5679999999999999998765433 33455555443 33332
Q ss_pred cCCCCCceeEEE-EccCCce----EEEee-----------------ecccCEEEEEecCCCCeEEEec-CCCcEEEeeCC
Q 021648 72 SKNGWDESLRLL-SLHDNKY----LRYFK-----------------GHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQR 128 (309)
Q Consensus 72 s~~g~d~~i~~~-d~~~~~~----~~~~~-----------------~h~~~v~~v~~~~~~~~l~s~s-~Dg~v~~Wd~~ 128 (309)
+. ...+|-.| --+.++- +-.+. .-..-|+.+.+|.|.++|.-+. .+|.+|.+|+.
T Consensus 265 ~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 265 CA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred Ee--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 21 12334333 3233431 11111 1134578999999999876555 58999999986
Q ss_pred Cc
Q 021648 129 AE 130 (309)
Q Consensus 129 ~~ 130 (309)
..
T Consensus 343 DP 344 (461)
T PF05694_consen 343 DP 344 (461)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=79.61 E-value=53 Score=30.55 Aligned_cols=106 Identities=9% Similarity=0.064 Sum_probs=48.0
Q ss_pred CCCEEEEeeCCC--cEEEEEcCCCceeeeeeccccce-eEEEEecCCCEEEEEcCCCCCceeEEEEccCCceEE--Eeee
Q 021648 22 SSSYLVTASDDE--SIRLYDVTAATCLKTINSKKYGV-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKG 96 (309)
Q Consensus 22 ~~~~l~t~s~D~--~v~iWd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~--~~~~ 96 (309)
++.+.+.||.++ ++-.||..+++=. .+..-..+. ...+...++...+.+...+....+..||..+++=.. .+.-
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 456667777643 5777876544211 111111111 111222344433333322223457788876653111 0110
Q ss_pred cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceee
Q 021648 97 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 133 (309)
Q Consensus 97 h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~ 133 (309)
..... ++ ..-+++..+.|+ .+.++|+++++..
T Consensus 397 ~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 397 PHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWT 428 (480)
T ss_pred ccccc-eE-EEECCEEEEECC---ceEEecCCCCcEe
Confidence 10111 11 123566666664 5678888777654
No 445
>PHA03098 kelch-like protein; Provisional
Probab=79.57 E-value=55 Score=30.76 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCCCEEEEEcCCC--------cEEEEECCCCce--EEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 238 PEGMFVISGSGDG--------SVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 238 p~g~~l~s~s~Dg--------~i~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
.+++.++.||.+. .+.+||..+.+- +..+.........+. -++++++.|+.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGD 496 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCC
Confidence 3666777776532 388899876543 222211111112222 26777777764
No 446
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.59 E-value=5.9 Score=20.98 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCcEEEEECCCCceEEE
Q 021648 242 FVISGSGDGSVYAWSVRSGKEVAS 265 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~~~~~~ 265 (309)
.++.++.+|.++.+|..+|+.+-+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577888999999999999887654
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=78.02 E-value=41 Score=31.28 Aligned_cols=138 Identities=9% Similarity=0.075 Sum_probs=70.0
Q ss_pred EecCCCcEEEeeCCCceeeeeeeecCceeEEECCC--------CcEEEEEECCEEEEEECCCCCcCCceEEEeCC--CCC
Q 021648 115 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ--------GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--DIS 184 (309)
Q Consensus 115 s~s~Dg~v~~Wd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~ 184 (309)
.++....+.--|++-++.+....+.....+.|.|. ...+.+-++..|.-.|+|..- ..+.+..... ...
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-NKi~v~esKdY~tKn 563 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-NKIKVVESKDYKTKN 563 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccC-Cceeeeeehhccccc
Confidence 34433344444555566555544443333333322 234444456666666766422 1111111100 011
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECC
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 258 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~ 258 (309)
.-++.. ....-++++++..|-|++||... ....+. -|.....+.-+..+.+|+++++... ..+-+-|++
T Consensus 564 ~Fss~~-tTesGyIa~as~kGDirLyDRig-~rAKta--lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 564 KFSSGM-TTESGYIAAASRKGDIRLYDRIG-KRAKTA--LPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccc-cccCceEEEecCCCceeeehhhc-chhhhc--CcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 222222 22345789999999999999532 222211 1233455666788899999876654 456676764
No 448
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.77 E-value=55 Score=29.74 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~ 214 (309)
.+..++..+..+.+.+-+.+|.|.+||+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 377788888889999999999999999964
No 449
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.71 E-value=59 Score=30.01 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=26.8
Q ss_pred ecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc
Q 021648 96 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130 (309)
Q Consensus 96 ~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~ 130 (309)
..-...+.+.|.||++.|++--..|.|++++..+.
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34456789999999988887765699999875443
No 450
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=77.70 E-value=6.7 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=17.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEE
Q 021648 187 NVVKFSNDGRLMLLTTMEGHIHVL 210 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~~dg~v~i~ 210 (309)
..++++++|+.+++-..+..|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 467778888888887777777654
No 451
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=77.62 E-value=66 Score=30.51 Aligned_cols=69 Identities=9% Similarity=0.132 Sum_probs=38.1
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEE-cCCCcEEEEECCC
Q 021648 189 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVRS 259 (309)
Q Consensus 189 v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~ 259 (309)
+.++|....|+.=.....=.+++.+........... ..+-|.+.+|.+||+.|+.+ +..=.-+|||-..
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 456776666655444433233443322222222221 23567788999999887766 4433568888643
No 452
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=77.43 E-value=1.2 Score=41.81 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=49.6
Q ss_pred ccceEecCCCcceEEEEeCCCCCEEEEeeCCC-cEEEEEcCC-----Cceeeeeecc-----ccceeEEEEecCCCEEEE
Q 021648 2 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDE-SIRLYDVTA-----ATCLKTINSK-----KYGVDLVCFTSHPTTVIY 70 (309)
Q Consensus 2 ~~~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~-~v~iWd~~~-----~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~ 70 (309)
..+.+|++|+.+|..++|.+.+.++++++.-| .|.++-+.. +.+-+.+..+ .+.+..+||+...+.+..
T Consensus 306 a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~ 385 (788)
T KOG2109|consen 306 ADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTA 385 (788)
T ss_pred hhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEee
Confidence 46789999999999999999999999998765 344443321 1122222222 234567888887777777
Q ss_pred EcCCC
Q 021648 71 SSKNG 75 (309)
Q Consensus 71 ~s~~g 75 (309)
++..|
T Consensus 386 gsc~G 390 (788)
T KOG2109|consen 386 GSCEG 390 (788)
T ss_pred cccCC
Confidence 66554
No 453
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.36 E-value=10 Score=21.07 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=20.9
Q ss_pred EecCCCcceEEEEeCCCCCEEEEee-CC--CcEEEE
Q 021648 6 SFRDYNGRISSMDFHKSSSYLVTAS-DD--ESIRLY 38 (309)
Q Consensus 6 ~~~~h~~~V~~i~~s~~~~~l~t~s-~D--~~v~iW 38 (309)
++....+.-....|+|||+.|+=++ .+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4445566777889999998875444 44 555555
No 454
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.82 E-value=34 Score=35.31 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=48.8
Q ss_pred EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEE--EECCCC------eEeE-----------E-eeecCCCCCccceEEEC
Q 021648 178 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHV--LDSFRG------TLLS-----------T-YNVKPVSRNSTLEASFS 237 (309)
Q Consensus 178 ~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i--~d~~~~------~~~~-----------~-~~~~~~~~~~~~~~~~s 237 (309)
.+..+...+++++...+|+.+.+|-. |.++= |....+ ..+. + +.....+..++..+...
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 34344557888888889998876654 44331 111110 0000 0 01111234466777777
Q ss_pred CCCCEEEEEcCCCcEEEEECCC
Q 021648 238 PEGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 238 p~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
..-+.+.+-++.|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 6777888899999999999976
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.47 E-value=3.6 Score=40.31 Aligned_cols=105 Identities=20% Similarity=0.380 Sum_probs=57.5
Q ss_pred eCCCCCEEEEeeCCCcEEEEEcC-----CCceeeeeeccccceeEEEEecCCCE-----------EEEEcCCCCCceeEE
Q 021648 19 FHKSSSYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTT-----------VIYSSKNGWDESLRL 82 (309)
Q Consensus 19 ~s~~~~~l~t~s~D~~v~iWd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~~~s~~g~d~~i~~ 82 (309)
.||||..+|+++.||.++.|-+. ...|++.++.|..... +|+..+... ++.++ ..+..+++
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Ittt--d~nre~k~ 319 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTT--DVNREEKF 319 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecc--cCCcceeE
Confidence 58999999999999999999764 3457777777763322 222222211 22222 22456777
Q ss_pred EEccCCceE--------EEeeecccCEEEEEecC-CCCeEEEecCCCcEEEee
Q 021648 83 LSLHDNKYL--------RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD 126 (309)
Q Consensus 83 ~d~~~~~~~--------~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~v~~Wd 126 (309)
|.-..=+|+ .....|...|..+..+. --..+++.+-|++|++|-
T Consensus 320 w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 320 WAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred eeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 764433332 11122333333322221 011345667788888884
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.35 E-value=20 Score=33.21 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCeEEEEccCCCEEEEEeCCCcEEEEEC---------CCCeEeE---Eeee-----cCCCCCccceEEECCCC---CEEE
Q 021648 185 DANVVKFSNDGRLMLLTTMEGHIHVLDS---------FRGTLLS---TYNV-----KPVSRNSTLEASFSPEG---MFVI 244 (309)
Q Consensus 185 ~~~~v~~s~dg~~l~~~~~dg~v~i~d~---------~~~~~~~---~~~~-----~~~~~~~~~~~~~sp~g---~~l~ 244 (309)
.|..|..|+.|..++-.|.+|-+.+.=. ..|+... ++.. .....-.+..++|+|+. .++.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3566778999999999999997655321 1121111 1100 01111234568899975 7888
Q ss_pred EEcCCCcEEEEECCCCceEE
Q 021648 245 SGSGDGSVYAWSVRSGKEVA 264 (309)
Q Consensus 245 s~s~Dg~i~vwd~~~~~~~~ 264 (309)
.-+.|.+||+||....+.+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88999999999998766553
No 457
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.16 E-value=50 Score=27.46 Aligned_cols=103 Identities=14% Similarity=0.239 Sum_probs=64.3
Q ss_pred eEEEEccCCCEE-EEEeCCCcEEEEE--CCCCeEeEE---eeec---CCCCCccceEEECCCCCEEEEEcCCCcEEEEEC
Q 021648 187 NVVKFSNDGRLM-LLTTMEGHIHVLD--SFRGTLLST---YNVK---PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 257 (309)
Q Consensus 187 ~~v~~s~dg~~l-~~~~~dg~v~i~d--~~~~~~~~~---~~~~---~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~ 257 (309)
+.++++.+.+.+ ..-+.+-.|.-|| ..+|.+... +... +......-.++..-+|...++.-..++|.-.|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 456777777654 4456677787777 555543321 1110 000001112344557788888888889999999
Q ss_pred CCCceEEEeecCCCCCcEEEECCC--eeEEEEcc
Q 021648 258 RSGKEVASWMSFDTEPPVIKWTPG--SLMFVTGS 289 (309)
Q Consensus 258 ~~~~~~~~~~~~~~~v~~l~~~p~--~~~l~s~~ 289 (309)
.+|+.+.++.--+.++++++|--- ..+.+++.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 999999988766789999999653 33445544
No 458
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.81 E-value=18 Score=30.22 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=49.7
Q ss_pred EEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCC---CcEEEEECCC----CceEE--EeecCCCCCcEEEE
Q 021648 208 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS----GKEVA--SWMSFDTEPPVIKW 278 (309)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~D---g~i~vwd~~~----~~~~~--~~~~~~~~v~~l~~ 278 (309)
.+||+.+++... +.. ....-+..-+|-|||+.+.+||.- ..+++++..+ .+... .......--+++.-
T Consensus 49 ~~yD~~tn~~rp-l~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEecCCCcEEe-ccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 478888766532 221 111222334678999999999763 3688888654 11111 11233445566777
Q ss_pred CCCeeEEEEccce
Q 021648 279 TPGSLMFVTGSSE 291 (309)
Q Consensus 279 ~p~~~~l~s~~~d 291 (309)
-|||+.|+.|+..
T Consensus 126 L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 126 LPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCEEEEeCcC
Confidence 8999999999886
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.32 E-value=96 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.3
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEEee
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
..+..+..||+.++|+-=..+|.|.+-++...+...++.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 456678999999999999999999999988776665543
No 460
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.09 E-value=10 Score=36.61 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=25.9
Q ss_pred CEEEEEecCCCCeEEEecCCCcEEEeeCCCc
Q 021648 100 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130 (309)
Q Consensus 100 ~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~ 130 (309)
.++++.-+|.+.-+++++.||+++++++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 4667777899999999999999999986543
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.97 E-value=1e+02 Score=30.63 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCeEEEEc-------cCCCEEEEEeCCCcEEEE--------------ECCCCeEeEEeeecCCCCCccceEEECC-CCC
Q 021648 184 SDANVVKFS-------NDGRLMLLTTMEGHIHVL--------------DSFRGTLLSTYNVKPVSRNSTLEASFSP-EGM 241 (309)
Q Consensus 184 ~~~~~v~~s-------~dg~~l~~~~~dg~v~i~--------------d~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~ 241 (309)
.+|..|+|+ +..++|++-....+..+= -.....++.++........+...++|+| +.+
T Consensus 80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 80 SPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Q ss_pred EEEEEcCCCcEEEEEC-----CCCceEEEeecCCCCC------c----EEEECCC-eeEEEEccceEEEeeecCCCcccc
Q 021648 242 FVISGSGDGSVYAWSV-----RSGKEVASWMSFDTEP------P----VIKWTPG-SLMFVTGSSELSFWIPDLSKLGAY 305 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~-----~~~~~~~~~~~~~~~v------~----~l~~~p~-~~~l~s~~~d~~~~~~~~~~~~~~ 305 (309)
.||.....|.-.||++ ...........+.+.+ . .|.|.++ ..+|+....-+.+...+.....++
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEY 239 (765)
T ss_pred eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCccch
Q ss_pred ccCC
Q 021648 306 VGRK 309 (309)
Q Consensus 306 ~~~~ 309 (309)
+.++
T Consensus 240 l~~~ 243 (765)
T PF10214_consen 240 LVTA 243 (765)
T ss_pred hccC
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=72.78 E-value=63 Score=28.00 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=112.7
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEEcC------CCce-eeeeec-----cccceeEEEEecCCCE------------EEE
Q 021648 15 SSMDFHKSSSYLVTASDDESIRLYDVT------AATC-LKTINS-----KKYGVDLVCFTSHPTT------------VIY 70 (309)
Q Consensus 15 ~~i~~s~~~~~l~t~s~D~~v~iWd~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~~~------------~~~ 70 (309)
..|+|+|.+.+-++...-++..+||.. .... .-++.. .+...+.+.|...... ++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 479999999887888778899999986 1211 223321 1123455565533222 344
Q ss_pred EcCCCCCceeEEEEccCCce-----EEEee-ecccCE-EEEEecC--CCCeEEEec-CCCcEEEeeCCCceeee--eeee
Q 021648 71 SSKNGWDESLRLLSLHDNKY-----LRYFK-GHHDRV-VSLSLCS--SKDCFISGS-LDRTVLLWDQRAEKCQG--LLRV 138 (309)
Q Consensus 71 ~s~~g~d~~i~~~d~~~~~~-----~~~~~-~h~~~v-~~v~~~~--~~~~l~s~s-~Dg~v~~Wd~~~~~~~~--~~~~ 138 (309)
++ .|++|.-|...-+.. ...+. +..+.| +.+++.. .+++|..+. ..++|.++|-.-.+... .+.-
T Consensus 106 ~t---EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 106 VT---EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred Ee---CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 43 378999998533221 11222 112333 4455553 345555553 46888888843322110 0000
Q ss_pred c---------------CceeEEE---CCCC-cEEEEEECCEEEEEECCCCCcCCce-EEEeCCCCCCCeEEEEc------
Q 021648 139 Q---------------GRPAAAY---DDQG-LVFAVAFGGYIRMFDARKYEKGPFD-IFSVGGDISDANVVKFS------ 192 (309)
Q Consensus 139 ~---------------~~~~~~~---~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~v~~s------ 192 (309)
+ ....+.| ++.. .-++...-|.|.+||+.- .+. .+...+....-..++..
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCC
Confidence 0 0001111 0111 111111226788888642 221 12233333444455553
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEeEEeeecC---CCCCccceEEECC
Q 021648 193 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VSRNSTLEASFSP 238 (309)
Q Consensus 193 ~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~sp 238 (309)
..|.+|+..-.||+|..||..++..+..+.... +...-.+.+.|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 467889988899999999999988877665322 2223345677754
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.64 E-value=63 Score=28.27 Aligned_cols=57 Identities=11% Similarity=0.289 Sum_probs=40.6
Q ss_pred EEEeCCCCCEEEEeeCC------CcEEEEEcCCCceeeeee---------------ccccceeEEEEecCCCEEEEEcC
Q 021648 16 SMDFHKSSSYLVTASDD------ESIRLYDVTAATCLKTIN---------------SKKYGVDLVCFTSHPTTVIYSSK 73 (309)
Q Consensus 16 ~i~~s~~~~~l~t~s~D------~~v~iWd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~s~ 73 (309)
+|++.++|.++++-=.+ -.|+-+|.+ |+.++.+. ..+.+...+++++++..++++..
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 67777888888888778 788888866 66654431 12335678999999997666543
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=71.96 E-value=16 Score=29.77 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=36.4
Q ss_pred CEEEEEcCCCcEEEEECC--CCceEEEeecCCCCCcEEEECCCeeEEEEccc
Q 021648 241 MFVISGSGDGSVYAWSVR--SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 290 (309)
Q Consensus 241 ~~l~s~s~Dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~s~~~ 290 (309)
.+|..+.....|.+|++. ..+...+|+.. +.|..++++..|.++++=-+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 444444556779999987 34556777766 57889999999999998543
No 465
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.78 E-value=43 Score=31.23 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=21.6
Q ss_pred cceEEEEeCCCCCEEEEeeCCCcEEEE
Q 021648 12 GRISSMDFHKSSSYLVTASDDESIRLY 38 (309)
Q Consensus 12 ~~V~~i~~s~~~~~l~t~s~D~~v~iW 38 (309)
-+|..|..++.|..+|-+|.||-+..+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 367788889999999999999876543
No 466
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.84 E-value=35 Score=23.50 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=30.6
Q ss_pred CceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEe--cCCCcEEEe
Q 021648 77 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG--SLDRTVLLW 125 (309)
Q Consensus 77 d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~--s~Dg~v~~W 125 (309)
++.+--||..+++....+.+ -...++|++++|+..++-+ ..-+..|+|
T Consensus 36 ~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 56788889888775444444 4477999999999865544 334445555
No 467
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.96 E-value=19 Score=20.02 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEee
Q 021648 242 FVISGSGDGSVYAWSVRSGKEVASWM 267 (309)
Q Consensus 242 ~l~s~s~Dg~i~vwd~~~~~~~~~~~ 267 (309)
.+..++.||.++-.|.++|+.+-.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35566999999999999999887654
No 468
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.52 E-value=1.1e+02 Score=28.56 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=56.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcC-------------CCcEEEE
Q 021648 189 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-------------DGSVYAW 255 (309)
Q Consensus 189 v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~-------------Dg~i~vw 255 (309)
+..-++|.+++... ..++.+|.. |+.+..+........--..+..-|+|++|+.+.. +..|...
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55678898887665 788888874 6666665543211000125678899999998882 2246667
Q ss_pred ECCCCceEEEee--cC----C---------------------CCCcEEEECC-CeeEEEEccceEEEeeec
Q 021648 256 SVRSGKEVASWM--SF----D---------------------TEPPVIKWTP-GSLMFVTGSSELSFWIPD 298 (309)
Q Consensus 256 d~~~~~~~~~~~--~~----~---------------------~~v~~l~~~p-~~~~l~s~~~d~~~~~~~ 298 (309)
| .+|+.+..+. .| . -.++++.+.| ++.+++|....-.+|..+
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 7 7777665542 11 0 1246788988 778888877654555444
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.18 E-value=68 Score=26.17 Aligned_cols=105 Identities=15% Similarity=0.304 Sum_probs=59.6
Q ss_pred CEEEEeeCCCcEEEEEcCCCce--eeeeeccccceeEEEEecCCCEEEEEcCCCCCc---eeEEE-EccC----CceEE-
Q 021648 24 SYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE---SLRLL-SLHD----NKYLR- 92 (309)
Q Consensus 24 ~~l~t~s~D~~v~iWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~---~i~~~-d~~~----~~~~~- 92 (309)
+.|+.+..-+.|.+|++.+..+ +.++..- ..|..+.++..|+++++--...... .+|+| |... .+.++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3443335567899999984333 3444443 4678899999999998764333233 67776 3322 22222
Q ss_pred Eeeec---------------------ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc
Q 021648 93 YFKGH---------------------HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 130 (309)
Q Consensus 93 ~~~~h---------------------~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~ 130 (309)
.+.|| ...+.+++-+|-...|+.|+ ++++.+|.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22231 22455566666433344444 667888876433
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=66.05 E-value=44 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=22.6
Q ss_pred cCEEEEEecCCC-----C-eEEEecCCCcEEEeeCC
Q 021648 99 DRVVSLSLCSSK-----D-CFISGSLDRTVLLWDQR 128 (309)
Q Consensus 99 ~~v~~v~~~~~~-----~-~l~s~s~Dg~v~~Wd~~ 128 (309)
..+.+++|+|.| + .|+.-..++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999843 2 56777889999998754
No 471
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.80 E-value=12 Score=21.06 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=16.5
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 021648 239 EGMFVISGSGDGSVYAWSVRS 259 (309)
Q Consensus 239 ~g~~l~s~s~Dg~i~vwd~~~ 259 (309)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 567899999999999999864
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=65.76 E-value=62 Score=32.81 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=54.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC------CEEEEEcCCCcEEEEECCCC
Q 021648 187 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG------MFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 187 ~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g------~~l~s~s~Dg~i~vwd~~~~ 260 (309)
+.+...-+.+.++.+..+|...-+....+.++.++.-.......+.++++.+++ ++++.|+.|+.+++..+...
T Consensus 541 ~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~ 620 (1205)
T KOG1898|consen 541 RIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPS 620 (1205)
T ss_pred EEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCc
Confidence 333333344556666666666655554433344442222233456677787755 78999999999999999866
Q ss_pred ceEEEee--cCCCCCcEEEE
Q 021648 261 KEVASWM--SFDTEPPVIKW 278 (309)
Q Consensus 261 ~~~~~~~--~~~~~v~~l~~ 278 (309)
..+..+. +.+.++.++.+
T Consensus 621 d~l~~ls~q~l~~~~~s~~i 640 (1205)
T KOG1898|consen 621 DCLQPLSVQGLSSPPESLCI 640 (1205)
T ss_pred ceEEEccccccCCCccceEE
Confidence 6665543 34445555443
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.55 E-value=68 Score=33.30 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCCCeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 021648 182 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 182 ~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~ 214 (309)
+..++..+++...-..+-+-+..|+|++||+..
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 345677777777677777778888888888754
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.17 E-value=42 Score=23.09 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=26.6
Q ss_pred eeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEc
Q 021648 29 ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS 72 (309)
Q Consensus 29 ~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 72 (309)
+..+|.+.-||..+++....+.+-. -...+++++++..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 3356778888888776544444433 346788999998887764
No 475
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=64.94 E-value=1.5e+02 Score=29.18 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCeEEEEc--cCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCC-----C-EEEEEcCCCcEEEEE
Q 021648 185 DANVVKFS--NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-----M-FVISGSGDGSVYAWS 256 (309)
Q Consensus 185 ~~~~v~~s--~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-----~-~l~s~s~Dg~i~vwd 256 (309)
.+..+++. ...+++|+++....|.||-...............+...|-+|+|-++. . ++++++-.|.+-+|+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 56778887 778888888888888887543321111110011233456678886643 2 888899999999988
Q ss_pred C
Q 021648 257 V 257 (309)
Q Consensus 257 ~ 257 (309)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 8
No 476
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=64.73 E-value=1.1e+02 Score=27.91 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCCEEEEee-CCCcEEEEEcCC----Cceeeeeeccc----c---ceeEEEEecCCCEEEEEc--CCC-CCceeEEEEcc
Q 021648 22 SSSYLVTAS-DDESIRLYDVTA----ATCLKTINSKK----Y---GVDLVCFTSHPTTVIYSS--KNG-WDESLRLLSLH 86 (309)
Q Consensus 22 ~~~~l~t~s-~D~~v~iWd~~~----~~~~~~~~~~~----~---~v~~~~~~~~~~~~~~~s--~~g-~d~~i~~~d~~ 86 (309)
+.++|+..+ ....|-|.|+.+ .+..++++... . ....+-+-|+++.++++- ..| .-+-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456666666 567888888873 33345554311 1 112233446666555431 111 23456666766
Q ss_pred CCceEEEeee---cccCEEEEEecCCCCeEEEecC--------------------CCcEEEeeCCCceeeeeeeecCcee
Q 021648 87 DNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSL--------------------DRTVLLWDQRAEKCQGLLRVQGRPA 143 (309)
Q Consensus 87 ~~~~~~~~~~---h~~~v~~v~~~~~~~~l~s~s~--------------------Dg~v~~Wd~~~~~~~~~~~~~~~~~ 143 (309)
+-+....... ....-...-+.|..+.++|+.+ -.++.+||+++.+...++.+...-.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 5554433322 1223455666777778887763 4689999999998887776653211
Q ss_pred ----EEE-C-CCC--cEEEEEECCEEEEEEC-CCCCcCCceEEEe-----CCC------------CCCCeEEEEccCCCE
Q 021648 144 ----AAY-D-DQG--LVFAVAFGGYIRMFDA-RKYEKGPFDIFSV-----GGD------------ISDANVVKFSNDGRL 197 (309)
Q Consensus 144 ----~~~-~-~~~--~~~~~~~~~~i~~~d~-~~~~~~~~~~~~~-----~~~------------~~~~~~v~~s~dg~~ 197 (309)
+-+ . +.. .+..++....|-.|-- ...+-..-++..+ .+. ..-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 112 1 222 2444444545444421 1110000011111 111 123567889999987
Q ss_pred EE-EEeCCCcEEEEECCC
Q 021648 198 ML-LTTMEGHIHVLDSFR 214 (309)
Q Consensus 198 l~-~~~~dg~v~i~d~~~ 214 (309)
|- +.-..|.|+.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 65 556899999999854
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=63.80 E-value=41 Score=23.01 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceEEECCCCCEEEEE-cCCCcEEEEECCC
Q 021648 232 LEASFSPEGMFVISG-SGDGSVYAWSVRS 259 (309)
Q Consensus 232 ~~~~~sp~g~~l~s~-s~Dg~i~vwd~~~ 259 (309)
..+.++|++++|..+ ...+.|++|+.++
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 458999999998777 4567999998753
No 478
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.41 E-value=24 Score=35.91 Aligned_cols=114 Identities=11% Similarity=0.007 Sum_probs=64.4
Q ss_pred ceEEEEeCCCCCE--EEEeeCCCcEEEEEcCCCce-----eeeeeccc----cc--eeEEEEecCCCEEEEEcCCCCCce
Q 021648 13 RISSMDFHKSSSY--LVTASDDESIRLYDVTAATC-----LKTINSKK----YG--VDLVCFTSHPTTVIYSSKNGWDES 79 (309)
Q Consensus 13 ~V~~i~~s~~~~~--l~t~s~D~~v~iWd~~~~~~-----~~~~~~~~----~~--v~~~~~~~~~~~~~~~s~~g~d~~ 79 (309)
+|..+...+|+.. ++..+.|-.|..||+.+-.. .+.|..+. .+ +.++.|.|......+.+. -|..
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 4445555677654 34444556888999864221 11122111 12 234445554332222211 1667
Q ss_pred eEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCC
Q 021648 80 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 128 (309)
Q Consensus 80 i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~ 128 (309)
|++..+........--.-...+++++|+|.|+.++.|-..|++.-+.+.
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 7777664322211111244578999999999999999999999988753
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.28 E-value=92 Score=28.61 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=83.5
Q ss_pred EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee--ee-cCc-----eeEE--ECCCCcEEEEEECCE
Q 021648 91 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RV-QGR-----PAAA--YDDQGLVFAVAFGGY 160 (309)
Q Consensus 91 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~--~~-~~~-----~~~~--~~~~~~~~~~~~~~~ 160 (309)
+..+..-...|..+-..||++++..-+. .++.+.++.+....... .. ++. .... ......++....||-
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 3345555667788888999996544432 56777776544332211 00 110 0000 111223455555666
Q ss_pred EEE-EECCCCCcCCceEE---EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEE
Q 021648 161 IRM-FDARKYEKGPFDIF---SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 236 (309)
Q Consensus 161 i~~-~d~~~~~~~~~~~~---~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
|.- ||+|+...+.+... .+.+ ..+..+.-..+-+.+.+-..+|++.++-......+- ++. .. ....-+++
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~p--a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~--~~-~~~~~~~~ 365 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAP--AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FER--AY-QAPQLVAM 365 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCc--ccceeeccccccceEEEEcCCCceeeeecccCccee-hhh--hh-cCcceeee
Confidence 544 47776544433221 1111 222222222223445555666666666433222111 110 11 12335799
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRSGKEVASW 266 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~~ 266 (309)
||.+.++++-. .|.|+++.+++..+-.++
T Consensus 366 Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 366 SPNQAYLLSED-QGKIRLAQLENRNPEISW 394 (733)
T ss_pred Ccccchheeec-CCceEEEEecCCCCCccH
Confidence 99999988763 467999999876554443
No 480
>PRK10115 protease 2; Provisional
Probab=61.99 E-value=1.7e+02 Score=28.82 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=46.1
Q ss_pred ceeEEEEecCCCEEEEEcCCCCC--ceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCC------CcEEEee
Q 021648 55 GVDLVCFTSHPTTVIYSSKNGWD--ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD------RTVLLWD 126 (309)
Q Consensus 55 ~v~~~~~~~~~~~~~~~s~~g~d--~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D------g~v~~Wd 126 (309)
.+..+.++|+++.++++...+-+ .++++.|+.+++.+...-.... ..++|.+|++.|+-...| ..|.+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35567889999988877544323 4677889988763322111111 458999998865544332 3566777
Q ss_pred CCCc
Q 021648 127 QRAE 130 (309)
Q Consensus 127 ~~~~ 130 (309)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 7766
No 481
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=58.99 E-value=89 Score=31.38 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEE-EcCCC-----cEEEEECCC-CceEEEeecCCCCCcEE
Q 021648 204 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-GSGDG-----SVYAWSVRS-GKEVASWMSFDTEPPVI 276 (309)
Q Consensus 204 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s-~s~Dg-----~i~vwd~~~-~~~~~~~~~~~~~v~~l 276 (309)
.+.+.+-|........ .+. .....+..=+|||||++||= .+.++ .|++-|+.+ +..+.++.-.++.|+.-
T Consensus 328 ~~~L~~~D~dG~n~~~-ve~--~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprw 404 (912)
T TIGR02171 328 TGNLAYIDYTKGASRA-VEI--EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRW 404 (912)
T ss_pred CCeEEEEecCCCCceE-EEe--cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccce
Confidence 3577777765433332 211 12344555689999999988 56555 599999876 33345566667888887
Q ss_pred EECCCee
Q 021648 277 KWTPGSL 283 (309)
Q Consensus 277 ~~~p~~~ 283 (309)
...++|.
T Consensus 405 rv~e~gd 411 (912)
T TIGR02171 405 RVLENGD 411 (912)
T ss_pred EecCCCC
Confidence 7778764
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=57.82 E-value=78 Score=23.73 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=61.1
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEEcCCCc--------eeeeeeccccceeEEEEec-----CCCEEEEEcCCCCCceeEE
Q 021648 16 SMDFHKSSSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRL 82 (309)
Q Consensus 16 ~i~~s~~~~~l~t~s~D~~v~iWd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~s~~g~d~~i~~ 82 (309)
.-+|+....-|+.+..-+.|.|.+..... .++.+...+ .|++++..+ ..+.++.++ ..++..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-~italaaG~l~~~~~~D~LliGt----~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-EITALAAGRLKPDDGRDCLLIGT----QTSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-ceEEEEEEecCCCCCcCEEEEec----cceEEE
Confidence 44677766778888888999999876332 233444332 355555433 233566665 457999
Q ss_pred EEccCCceEEEeeecccCEEEEEecC----CCCeEEEecCCCcEEEeeC
Q 021648 83 LSLHDNKYLRYFKGHHDRVVSLSLCS----SKDCFISGSLDRTVLLWDQ 127 (309)
Q Consensus 83 ~d~~~~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~s~Dg~v~~Wd~ 127 (309)
||++.+..+. ++.-.+.|+++.+-. +...++.|+ +-.|.-+|.
T Consensus 78 YDV~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~ 124 (136)
T PF14781_consen 78 YDVENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDY 124 (136)
T ss_pred EEcccCchhh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCC
Confidence 9998876443 233446777776631 122333333 455555553
No 483
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.79 E-value=2.8 Score=38.20 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=69.6
Q ss_pred ceEEEEeCCCCCEE-EEeeCCCcEEEEEcCCCceeeeeeccccceeEEEEecCCCEEEEEcCCCCCceeEEEEccCCceE
Q 021648 13 RISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 91 (309)
Q Consensus 13 ~V~~i~~s~~~~~l-~t~s~D~~v~iWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~ 91 (309)
..-.++|+.++..+ +-+-.-+.+-+||+.+...-+.-.+..+.-..+.+++.....+.+- ..+.+.+++..+...+
T Consensus 76 ~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRI 152 (615)
T ss_pred hHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhh
Confidence 34467788777654 4555678999999975332222122222233456666655555542 3678999988766555
Q ss_pred EEeeecccCEEEEEecCCCCeEEEecCCCcEEE
Q 021648 92 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 124 (309)
Q Consensus 92 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~ 124 (309)
-....|..++.++++.+.+ +.+.++.|..+.+
T Consensus 153 iv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 153 IVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred hhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 5555599999999998865 6777877776654
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=56.36 E-value=95 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCeEEEEccCC------CEEEEEeCCCcEEEEECCC
Q 021648 185 DANVVKFSNDG------RLMLLTTMEGHIHVLDSFR 214 (309)
Q Consensus 185 ~~~~v~~s~dg------~~l~~~~~dg~v~i~d~~~ 214 (309)
.+..+++||-| -+|++-+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67888999854 3577778899999997653
No 485
>PLN02193 nitrile-specifier protein
Probab=53.45 E-value=1.9e+02 Score=26.83 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCeEeEEeee--cCCCCCccceEEECCCCCEEEEEcCC--------------CcEE
Q 021648 194 DGRLMLLTTME----GHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGD--------------GSVY 253 (309)
Q Consensus 194 dg~~l~~~~~d----g~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~sp~g~~l~s~s~D--------------g~i~ 253 (309)
++++++.++.+ ..+.+||+.+.+-...-.. .+...... .+..-+++.++.|+.+ ..+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF--ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee--EEEEECCEEEEECCccCCccccccCccceeccEE
Confidence 67787777765 4588899877654332111 11111111 1222367788888853 2478
Q ss_pred EEECCCCc
Q 021648 254 AWSVRSGK 261 (309)
Q Consensus 254 vwd~~~~~ 261 (309)
++|..+.+
T Consensus 406 ~~D~~t~~ 413 (470)
T PLN02193 406 ALDTETLQ 413 (470)
T ss_pred EEEcCcCE
Confidence 99988754
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=53.24 E-value=57 Score=27.45 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=37.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEEC-CCCCEEEEEcCCCcEEEE
Q 021648 196 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISGSGDGSVYAW 255 (309)
Q Consensus 196 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~s-p~g~~l~s~s~Dg~i~vw 255 (309)
..++.|+.+|.|+|.|...-..+......+....-...=.|. -| -.|+.+..||.|++-
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devd-yRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVD-YRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccc-eEEEEEeCCCEEEEE
Confidence 578999999999999988777777766543221100111232 23 345666788888764
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=52.98 E-value=1.5e+02 Score=25.63 Aligned_cols=26 Identities=4% Similarity=-0.106 Sum_probs=17.5
Q ss_pred EccCCCEEEEEeCCCc----EEEEECCCCe
Q 021648 191 FSNDGRLMLLTTMEGH----IHVLDSFRGT 216 (309)
Q Consensus 191 ~s~dg~~l~~~~~dg~----v~i~d~~~~~ 216 (309)
..-++++++.|+.++. +..||+.+.+
T Consensus 168 ~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 168 VKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3457788888886643 4578877654
No 488
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=52.06 E-value=1e+02 Score=28.30 Aligned_cols=161 Identities=13% Similarity=0.067 Sum_probs=81.4
Q ss_pred ceEecCCCcceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCce-eeee-eccc----ccee-EEEEecCCCEEEEEcCCCC
Q 021648 4 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTI-NSKK----YGVD-LVCFTSHPTTVIYSSKNGW 76 (309)
Q Consensus 4 ~~~~~~h~~~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~~-~~~~-~~~~----~~v~-~~~~~~~~~~~~~~s~~g~ 76 (309)
+..+..--..|..+-..|||+.|-.-+. .++-++++.+... ++.+ .... ..|+ .+..-..+..++....
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~--- 288 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE--- 288 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC---
Confidence 3334444566778888999987644332 6888888864221 1222 1101 1111 1111123334454443
Q ss_pred CceeEEE-EccCCc-e----EEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeee-cCceeEEECCC
Q 021648 77 DESLRLL-SLHDNK-Y----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQ 149 (309)
Q Consensus 77 d~~i~~~-d~~~~~-~----~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~-~~~~~~~~~~~ 149 (309)
|+-|.-| |+..+. . ++.++-...++..+.--.+.+-|++-...|++..+.....+..-..+. +.......++.
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPN 368 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcc
Confidence 6677777 544322 1 222222222333222111234577888888888776444333221111 12223456666
Q ss_pred CcEEEEEECCEEEEEECCC
Q 021648 150 GLVFAVAFGGYIRMFDARK 168 (309)
Q Consensus 150 ~~~~~~~~~~~i~~~d~~~ 168 (309)
...+..-..+.|+++.+.+
T Consensus 369 ~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred cchheeecCCceEEEEecC
Confidence 6667666778899998765
No 489
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=51.95 E-value=2.4e+02 Score=27.52 Aligned_cols=160 Identities=12% Similarity=0.150 Sum_probs=87.8
Q ss_pred cccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeee--eeeecCceeEEEC----------CCCcEEEEEE-C---CE
Q 021648 97 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYD----------DQGLVFAVAF-G---GY 160 (309)
Q Consensus 97 h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~-~---~~ 160 (309)
-.+.|.+|.|.++++.++..-..|.|.+||+..+.... .+.........|+ ....++..+. . -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 46789999999999999999999999999983332222 1111111111111 1234444444 2 25
Q ss_pred EEEEECCCCCcCCceEE--EeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc-cceEEE-
Q 021648 161 IRMFDARKYEKGPFDIF--SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASF- 236 (309)
Q Consensus 161 i~~~d~~~~~~~~~~~~--~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~- 236 (309)
.+++.+.....+.+.+. ........-..+|+. +|++..- .++++.+|.+.......+....+.-... --.+++
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 67777733233333332 111111122334444 5665554 7789999998877777776654222111 112343
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCC
Q 021648 237 SPEGMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 237 sp~g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
.|+.+.++-+ .+..|++.|+.-.
T Consensus 285 ~~s~nRvLLs-~~nkIyLld~~~~ 307 (670)
T PF10395_consen 285 PPSPNRVLLS-VNNKIYLLDLKFE 307 (670)
T ss_pred cCCCCeEEEE-cCCEEEEEeehhh
Confidence 3444444444 3567999998543
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=51.30 E-value=2.6e+02 Score=27.87 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=22.2
Q ss_pred CcceEEEEeCCCCCEEEEeeCCCcEEEEE
Q 021648 11 NGRISSMDFHKSSSYLVTASDDESIRLYD 39 (309)
Q Consensus 11 ~~~V~~i~~s~~~~~l~t~s~D~~v~iWd 39 (309)
++.|-+.+||.|.+.++..-.+.+|-+.|
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 45688889999988666666677887775
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=50.61 E-value=2e+02 Score=26.16 Aligned_cols=155 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred ccCEEEEEecCCCCeEEEecCCCcEEEeeCCCc--eeeeeeeecCceeEEECCCCcEEEEEECCEEEEEECCCCCcC--C
Q 021648 98 HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG--P 173 (309)
Q Consensus 98 ~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~ 173 (309)
.+....+..++|+..++.+..-..++-||--.. +....-.........+.+++.++.++.+|.+..=+.....-. .
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc
Q ss_pred ceEEEeCCCCCCCeEEEEccCCCEEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEE
Q 021648 174 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 253 (309)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~ 253 (309)
+...........+..+.+.+++..+++|... +.+.-...|+.-........-.....++.|.++++-+++| .+|.|-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG--ILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCC--cEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Q ss_pred EE
Q 021648 254 AW 255 (309)
Q Consensus 254 vw 255 (309)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
No 492
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=48.96 E-value=38 Score=17.51 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=19.3
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEE
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYD 39 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd 39 (309)
.|.+|+..+ .+++.+.+-+.+|||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 577787775 5888888888999873
No 493
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=45.17 E-value=2e+02 Score=24.72 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred EEEEecCCCEEEEEcCCCCCceeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeee-
Q 021648 58 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL- 136 (309)
Q Consensus 58 ~~~~~~~~~~~~~~s~~g~d~~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~- 136 (309)
.++-.+++.--+.+.. .+.|--.|..+|+....--+.-..-..|..-||+..-++-+.. .|.-.|.++.....--
T Consensus 66 dvapapdG~VWft~qg---~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 66 DVAPAPDGAVWFTAQG---TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccccCCCCceEEecCc---cccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Q ss_pred ----eecCceeEEECCCCcEEEEEEC----------CEEEEEECCCCCcCCceEEEeCCCCCCCeEEEEccCCCEEEEEe
Q 021648 137 ----RVQGRPAAAYDDQGLVFAVAFG----------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 202 (309)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 202 (309)
...+.....+++.+.+..++.. +.|++|+.-....+ +.+|..|||+...+.-
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gp--------------yGi~atpdGsvwyasl 207 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGP--------------YGICATPDGSVWYASL 207 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCC--------------cceEECCCCcEEEEec
Q ss_pred CCCcEEEEECCCCeEeEEeeecCCCCCccceEEECCCCCEEEEEcCCCcEEEEECCCC
Q 021648 203 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG 260 (309)
Q Consensus 203 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~ 260 (309)
.+..|...|..++ .-..+............+--+|.|+.-+|-...+.++-+|-...
T Consensus 208 agnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 208 AGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred cccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
No 494
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=44.69 E-value=2.5e+02 Score=25.69 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=36.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEeEEeeecCCCCCc--cceEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 021648 197 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS--TLEASFSPEGMFVISGSGDGSVYAWSVRSGK 261 (309)
Q Consensus 197 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~ 261 (309)
.++.++.++++.||.-. +++=.-.. ...+ +....|..-...|++-+.+|.+.+--+.|..
T Consensus 302 ~llV~t~t~~LlVy~d~--~L~WsA~l---~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDT--TLVWSAQL---PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEEEecCCeEEEEeCC--eEEEecCC---CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 47888999999998532 22111111 1112 1122244446788888999999998887754
No 495
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=44.42 E-value=56 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=26.9
Q ss_pred ceEEEEeCCCCCEEEEeeCCCcEEEEEcCCCc
Q 021648 13 RISSMDFHKSSSYLVTASDDESIRLYDVTAAT 44 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~~v~iWd~~~~~ 44 (309)
-+++|.-+|.|..+++++.||++++|+....+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 35677778999999999999999999986443
No 496
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=42.00 E-value=43 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=16.1
Q ss_pred ceEEEEeCCCCCEEEEeeC
Q 021648 13 RISSMDFHKSSSYLVTASD 31 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~ 31 (309)
.+.++...|||++++.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678899999999999864
No 497
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=41.91 E-value=71 Score=27.39 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=36.9
Q ss_pred eeEEEEccCCceEEEeeecccCEEEEEecCCCCeEEEec------CCCcEEEeeCCCcee
Q 021648 79 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKC 132 (309)
Q Consensus 79 ~i~~~d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s------~Dg~v~~Wd~~~~~~ 132 (309)
.+.+||..+.+=...-.+-.+.|.++.|..+.+.++.|. ....+..||+.+...
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 588888776653333345667899999986666666664 356778888776643
No 498
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=41.54 E-value=56 Score=18.27 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=18.6
Q ss_pred ceEEEEeCCCCCEEEEeeCCC
Q 021648 13 RISSMDFHKSSSYLVTASDDE 33 (309)
Q Consensus 13 ~V~~i~~s~~~~~l~t~s~D~ 33 (309)
...+|+++++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 478999999999999998876
No 499
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=41.24 E-value=2.4e+02 Score=30.66 Aligned_cols=150 Identities=10% Similarity=0.130 Sum_probs=82.0
Q ss_pred eecccCEEEEEecCCCCeEEEecCCCcEEEeeCCCceeeeeeeec--CceeEEECCCCcEEEEEECCEEEEEECCCCCcC
Q 021648 95 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG 172 (309)
Q Consensus 95 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~v~~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 172 (309)
+.|.+.++.|.-.+++..+=- .|+.+..||....+....-... ........-+|.+++ -.|.. +-|+.....+
T Consensus 359 kaH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~--l~nLSs~~~~ 433 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDT--LVNLSSGQMS 433 (1774)
T ss_pred HHHHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCc--eeecCCCCcc
Confidence 358888888888888876544 5889999998766443110000 011122223344444 22221 1122211110
Q ss_pred CceEEEeCCCCCCCeEEEEccCCCE-EEEEeCCCcEEEEECCCCe------EeEEeeecCCCCCccceEEECCCCCEEEE
Q 021648 173 PFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGT------LLSTYNVKPVSRNSTLEASFSPEGMFVIS 245 (309)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~s~dg~~-l~~~~~dg~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~sp~g~~l~s 245 (309)
+....++.++..+++|+. ++++....++.++++.... ....++..... ....+|.++++ .|+.
T Consensus 434 -------~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~-a~A~~VgLs~d--rLFv 503 (1774)
T PF11725_consen 434 -------EAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGK-AQAQSVGLSND--RLFV 503 (1774)
T ss_pred -------hhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCc-hhhhheeecCC--eEEE
Confidence 111234566778899998 4455555567999875431 11122222211 14456778777 6888
Q ss_pred EcCCCcEEEEECCC
Q 021648 246 GSGDGSVYAWSVRS 259 (309)
Q Consensus 246 ~s~Dg~i~vwd~~~ 259 (309)
+..+|.+|.=++..
T Consensus 504 ADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 504 ADSEGKLYSADLPA 517 (1774)
T ss_pred EeCCCCEEeccccc
Confidence 88999999888754
No 500
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=40.39 E-value=2.2e+02 Score=23.74 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=46.3
Q ss_pred CccceEEECCCCCEEEEEcCCCcEEEEECCCCceEEE----e-ecCCCCCcEEEECC--CeeEEEEccceEEEeeecC
Q 021648 229 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS----W-MSFDTEPPVIKWTP--GSLMFVTGSSELSFWIPDL 299 (309)
Q Consensus 229 ~~~~~~~~sp~g~~l~s~s~Dg~i~vwd~~~~~~~~~----~-~~~~~~v~~l~~~p--~~~~l~s~~~d~~~~~~~~ 299 (309)
..+..+.|-|....|+..+.++.|+..|..++..... + ....+....+.|+| |.-.+++....-....|+-
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~npdt 104 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNLRLNPDT 104 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEEEECCCC
Confidence 4567789999877777778899999999999864222 1 12334456688999 4455565443333334443
Done!