Query 021649
Match_columns 309
No_of_seqs 73 out of 75
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uq8_A DNA ligase; adenylated 93.8 0.049 1.7E-06 51.5 4.5 27 148-174 15-42 (322)
2 3jsl_A DNA ligase; NAD+-depend 93.0 0.074 2.5E-06 50.3 4.1 25 150-174 19-44 (318)
3 4glw_A DNA ligase; inhibitor, 92.7 0.02 6.9E-07 53.3 -0.0 26 149-174 15-41 (305)
4 1zau_A DNA ligase; AMP; HET: D 92.1 0.1 3.6E-06 49.4 4.0 26 150-175 28-54 (328)
5 1ta8_A DNA ligase, NAD-depende 92.0 0.11 3.9E-06 49.2 4.1 25 150-174 26-51 (332)
6 1b04_A Protein (DNA ligase); D 91.9 0.11 3.7E-06 49.0 3.8 25 150-174 21-46 (318)
7 4glx_A DNA ligase; inhibitor, 91.2 0.11 3.9E-06 52.4 3.3 25 150-174 19-44 (586)
8 4glw_A DNA ligase; inhibitor, 88.3 0.076 2.6E-06 49.5 -0.5 34 97-130 7-40 (305)
9 3uq8_A DNA ligase; adenylated 86.8 0.54 1.8E-05 44.5 4.3 35 95-129 6-40 (322)
10 1b04_A Protein (DNA ligase); D 86.6 0.55 1.9E-05 44.3 4.2 36 95-130 10-45 (318)
11 1zau_A DNA ligase; AMP; HET: D 86.5 0.55 1.9E-05 44.5 4.2 37 94-130 16-52 (328)
12 2owo_A DNA ligase; protein-DNA 86.4 0.42 1.4E-05 49.2 3.6 25 150-174 19-44 (671)
13 3jsl_A DNA ligase; NAD+-depend 86.3 0.61 2.1E-05 44.1 4.4 35 95-129 8-42 (318)
14 1ta8_A DNA ligase, NAD-depende 86.0 0.62 2.1E-05 44.2 4.3 36 95-130 15-50 (332)
15 4glx_A DNA ligase; inhibitor, 86.0 0.53 1.8E-05 47.7 4.0 36 95-130 8-43 (586)
16 1dgs_A DNA ligase; AMP complex 85.1 0.38 1.3E-05 49.4 2.5 26 150-175 21-47 (667)
17 3sgi_A DNA ligase; HET: DNA AM 80.5 0.21 7.2E-06 51.0 -1.4 25 150-174 28-53 (615)
18 2owo_A DNA ligase; protein-DNA 79.7 1.3 4.4E-05 45.6 4.0 36 95-130 8-43 (671)
19 1dgs_A DNA ligase; AMP complex 76.3 1.4 4.7E-05 45.4 3.0 36 95-130 10-45 (667)
20 3sgi_A DNA ligase; HET: DNA AM 70.9 1.3 4.5E-05 45.2 1.4 38 95-132 17-55 (615)
21 3vc8_A RNA-directed RNA polyme 63.6 17 0.00058 29.4 6.2 67 112-190 12-90 (94)
22 3gzf_A Replicase polyprotein 1 62.8 18 0.00062 29.3 6.2 66 113-190 18-94 (96)
23 2k5c_A Uncharacterized protein 50.9 4.4 0.00015 32.6 0.8 8 274-281 53-60 (95)
24 2qkd_A Zinc finger protein ZPR 45.4 12 0.00041 36.5 3.0 34 264-297 33-71 (404)
25 4esj_A Type-2 restriction enzy 45.4 10 0.00034 35.4 2.3 32 256-291 22-54 (257)
26 2kdx_A HYPA, hydrogenase/ureas 44.1 8.5 0.00029 30.5 1.5 16 274-289 92-108 (119)
27 3c1l_A Putative antioxidant de 40.1 31 0.0011 28.2 4.4 75 91-170 63-147 (188)
28 1l8d_A DNA double-strand break 37.8 8.2 0.00028 29.8 0.4 10 272-281 47-56 (112)
29 2apo_B Ribosome biogenesis pro 36.6 11 0.00036 28.1 0.9 12 270-281 16-27 (60)
30 2pfx_A Uncharacterized peroxid 34.4 35 0.0012 28.1 3.8 75 91-170 66-150 (191)
31 2qkd_A Zinc finger protein ZPR 33.1 25 0.00085 34.3 3.0 33 264-296 241-278 (404)
32 2akl_A PHNA-like protein PA012 32.9 13 0.00045 31.8 0.9 15 273-287 28-42 (138)
33 3r8s_0 50S ribosomal protein L 30.7 14 0.00048 26.7 0.7 10 272-281 27-36 (56)
34 2oyo_A Uncharacterized peroxid 29.8 52 0.0018 27.2 4.1 76 91-171 71-156 (196)
35 3ga8_A HTH-type transcriptiona 28.6 14 0.00046 27.3 0.3 9 274-282 38-46 (78)
36 2prr_A Alkylhydroperoxidase AH 28.1 41 0.0014 27.9 3.2 75 91-170 67-151 (197)
37 2aus_D NOP10, ribosome biogene 27.8 18 0.00062 26.9 0.9 12 270-281 15-26 (60)
38 3rmt_A 3-phosphoshikimate 1-ca 26.6 82 0.0028 30.4 5.4 51 142-192 318-377 (455)
39 1qyp_A RNA polymerase II; tran 25.3 26 0.00087 24.5 1.2 10 272-281 15-24 (57)
40 3g5o_A Uncharacterized protein 24.8 68 0.0023 25.2 3.8 48 116-172 46-93 (108)
41 3m1m_A ORF904; primase, polyme 24.6 30 0.001 33.3 1.9 68 107-204 209-277 (335)
42 3v2d_5 50S ribosomal protein L 22.7 24 0.00082 25.9 0.7 9 273-281 31-39 (60)
43 1byy_A Protein (sodium channel 22.5 30 0.001 24.5 1.1 36 121-159 2-37 (53)
44 2zjr_Z 50S ribosomal protein L 21.4 26 0.0009 25.6 0.7 8 274-281 32-39 (60)
45 3akb_A Putative calcium bindin 20.8 1.7E+02 0.0057 21.5 5.1 55 103-168 101-157 (166)
46 1vq8_Z 50S ribosomal protein L 20.6 32 0.0011 26.7 1.0 12 272-283 27-38 (83)
No 1
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=93.84 E-value=0.049 Score=51.52 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=22.5
Q ss_pred HHHHhhhc-CCCccChHHHHHHHHHHhh
Q 021649 148 EASMAYVA-GKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 148 EA~~AY~~-GkPimsDeEFD~LK~kLk~ 174 (309)
++-.+||. |+|+|||+|||+|.++|+.
T Consensus 15 ~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 42 (322)
T 3uq8_A 15 QYEYEYHVLDNPSVPDSEYDRLFHQLKA 42 (322)
T ss_dssp HHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 33557775 9999999999999999865
No 2
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=92.97 E-value=0.074 Score=50.29 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=21.2
Q ss_pred HHhhhc-CCCccChHHHHHHHHHHhh
Q 021649 150 SMAYVA-GKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~~-GkPimsDeEFD~LK~kLk~ 174 (309)
-.+||. |+|+|||+|||+|..+|+.
T Consensus 19 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 44 (318)
T 3jsl_A 19 SYEYYVEDNPSVPDSEYDKLLHELIK 44 (318)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 446775 9999999999999998864
No 3
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=92.72 E-value=0.02 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=3.8
Q ss_pred HHHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 149 ASMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 149 A~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
+-.+|| .|+|+|||+|||.|..+|+.
T Consensus 15 ~~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 15 YATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp ----------------------CHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 345777 59999999999999998874
No 4
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=92.11 E-value=0.1 Score=49.36 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=22.0
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~e 175 (309)
-.+|| .|+|+|||+|||+|..+|+.-
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (328)
T 1zau_A 28 QFRYYVRDAPIISDAEFDELLRRLEAL 54 (328)
T ss_dssp HHHHTTTCCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44676 699999999999999999753
No 5
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=92.00 E-value=0.11 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.7
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 26 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 51 (332)
T 1ta8_A 26 SHEYYVKDQPSVEDYVYDRLYKELVD 51 (332)
T ss_dssp HHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999999875
No 6
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=91.90 E-value=0.11 Score=49.03 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.6
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 21 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 21 GYEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999999874
No 7
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=91.17 E-value=0.11 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.6
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
-.+|| .|+|+|||+|||.|.++|+.
T Consensus 19 ~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45677 59999999999999999875
No 8
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=88.31 E-value=0.076 Score=49.47 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 97 ELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 97 e~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
++...--.+=.+||..|.|++||+|||.|.+||.
T Consensus 7 ~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~ 40 (305)
T 4glw_A 7 ELVALLNRYATEYYTSDNPSVSDSEYDRLYRELV 40 (305)
T ss_dssp C-----------------------------CHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3444444455789999999999999999998864
No 9
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=86.82 E-value=0.54 Score=44.47 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL 129 (309)
+.++...--.+=.+||..+.|++||+|||.|..||
T Consensus 6 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL 40 (322)
T 3uq8_A 6 LDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQL 40 (322)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34455555556678999999999999999998875
No 10
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=86.55 E-value=0.55 Score=44.27 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
+.++...--.+=.+||..+.|++||+|||.|..||.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 45 (318)
T 1b04_A 10 AAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELI 45 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555556688999999999999999999964
No 11
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=86.54 E-value=0.55 Score=44.45 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
-+.++...--.+=.+||..+.|++||+|||.|..||.
T Consensus 16 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (328)
T 1zau_A 16 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (328)
T ss_dssp THHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4556666666666789999999999999999999863
No 12
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=86.38 E-value=0.42 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.5
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
-.+|| .++|+|||+|||+|.++|+.
T Consensus 19 ~~~YY~~d~p~isD~eYD~L~~eL~~ 44 (671)
T 2owo_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (671)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45666 68999999999999999875
No 13
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=86.29 E-value=0.61 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL 129 (309)
+.++...--.+=.+||..+.|++||+|||.|..||
T Consensus 8 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL 42 (318)
T 3jsl_A 8 VNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHEL 42 (318)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 44555555556667888999999999999998885
No 14
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=86.03 E-value=0.62 Score=44.20 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
+.++...--.+=.+||..+.|++||+|||.|..||.
T Consensus 15 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 50 (332)
T 1ta8_A 15 AQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELV 50 (332)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 455555555556678999999999999999999864
No 15
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=85.97 E-value=0.53 Score=47.67 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
+.++...--.+=.+||..+.|++||+|||.|.+||.
T Consensus 8 i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~ 43 (586)
T 4glx_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (586)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555666789999999999999999998864
No 16
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=85.09 E-value=0.38 Score=49.42 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.2
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~e 175 (309)
-.+|| .++|+|||.|||+|.++|+.-
T Consensus 21 ~~~YY~~d~p~isD~eYD~l~~eL~~l 47 (667)
T 1dgs_A 21 NYRYYVLADPEISDAEYDRLLRELKEL 47 (667)
T ss_dssp HHHHHTTCCCCSCSSSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44666 699999999999999999853
No 17
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=80.54 E-value=0.21 Score=50.97 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=21.6
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
-.+|| .++|+|||+|||+|.++|+.
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (615)
T 3sgi_A 28 QFRYYVRDAPIISDAEFDELLRRLEA 53 (615)
T ss_dssp HHHHHHHSCCCSSCCSSCSSSSHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45777 79999999999999888864
No 18
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=79.70 E-value=1.3 Score=45.60 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
+.++...--.+=.+||..+.|++||+|||.|..||.
T Consensus 8 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~ 43 (671)
T 2owo_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (671)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555566789999999999999999999864
No 19
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=76.35 E-value=1.4 Score=45.40 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
+.++...--++=.+||..+.|++||+|||.|..||.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~ 45 (667)
T 1dgs_A 10 INELRDLIRYHNYRYYVLADPEISDAEYDRLLRELK 45 (667)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 344444445556689999999999999999999874
No 20
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=70.92 E-value=1.3 Score=45.18 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh-hc
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM-WE 132 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~-We 132 (309)
+.++...--.+=.+||..+.|++||+|||.|..||. ||
T Consensus 17 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE 55 (615)
T 3sgi_A 17 WQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALE 55 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 444544445555788989999999999999987763 53
No 21
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=63.57 E-value=17 Score=29.39 Aligned_cols=67 Identities=22% Similarity=0.451 Sum_probs=47.4
Q ss_pred cCccccChHHHhhhHhhhhhcCCeeEEeC-hhhHHHHHH--HHhhhcCCCccChHHHHHH------HH--HHh-hhCCce
Q 021649 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLS-SAEQKFLEA--SMAYVAGKPIMSDEEYDKL------KQ--KLK-MEGSEI 179 (309)
Q Consensus 112 ~gk~~msneefd~LkEeL~WeGSsvv~L~-~~EQ~FLEA--~~AY~~GkPimsDeEFD~L------K~--kLk-~eGS~V 179 (309)
.+.++++++.|..|+.+ ++ .+=+++|.. ...||+|. |++.+|+.- |+ .-+ ..|.+|
T Consensus 12 ~~TFvId~~~Y~kL~ns----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~ahLAkAl~~fs~~~g~dv 79 (94)
T 3vc8_A 12 LTTFMITKESYCKLKNS----------VSDVAFNRYLSLYNKYRYFSGK--MDTAAYREAACSQLAKAMETFNHNNGNDV 79 (94)
T ss_dssp TSCEEECHHHHHHHHHH----------SCHHHHHHHHHTHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHCSCCE
T ss_pred hceEEeccHHHHHHHhh----------cCHHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHHHHHHhhhcCCCce
Confidence 36779999999999998 33 333677766 44599996 899999853 22 234 568899
Q ss_pred eeecCceeecC
Q 021649 180 VVEGPRCSLRS 190 (309)
Q Consensus 180 Vvk~PrCslr~ 190 (309)
.-.-|+||+-+
T Consensus 80 LYtPP~~Sv~s 90 (94)
T 3vc8_A 80 LYQPPTASVTT 90 (94)
T ss_dssp EECCSCC----
T ss_pred eeCCCcceeeh
Confidence 88999999864
No 22
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=62.81 E-value=18 Score=29.33 Aligned_cols=66 Identities=18% Similarity=0.358 Sum_probs=50.3
Q ss_pred CccccChHHHhhhHhhhhhcCCeeEEeChh-hHHHHHH--HHhhhcCCCccChHHHHHH------H--HHHhhhCCceee
Q 021649 113 GKAVMSNEEFDNLKEELMWEGSSVVMLSSA-EQKFLEA--SMAYVAGKPIMSDEEYDKL------K--QKLKMEGSEIVV 181 (309)
Q Consensus 113 gk~~msneefd~LkEeL~WeGSsvv~L~~~-EQ~FLEA--~~AY~~GkPimsDeEFD~L------K--~kLk~eGS~VVv 181 (309)
+.++++++.|..|+.+ |+.+ =+++|.. ...||+|. |++.+|+.- | ..-+..|.+|.-
T Consensus 18 ~TFvId~~~Y~kL~n~----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~AhLakAl~~fs~~g~d~LY 85 (96)
T 3gzf_A 18 GTFVIDMRSYETLVNS----------TSLDRIKSYANSFNKYKYYTGS--MGEADYRMACYAHLGKALMDYSVSRNDKLY 85 (96)
T ss_dssp SCEEECHHHHHHHHTT----------TTHHHHHHHHHTHHHHHSCCSC--CCHHHHHHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ceEEEccHHHHHHHhh----------cCHHHHHHHHHHHhhhccccCC--cchHHHHHHHHHHHHHHHHHHhccCCceee
Confidence 5678999999999987 4433 3677766 44599996 899999753 1 244667889998
Q ss_pred ecCceeecC
Q 021649 182 EGPRCSLRS 190 (309)
Q Consensus 182 k~PrCslr~ 190 (309)
.-|+||+-+
T Consensus 86 tPP~~Sv~S 94 (96)
T 3gzf_A 86 TPPTVSVNS 94 (96)
T ss_dssp CCCEEEEEC
T ss_pred CCCcccccC
Confidence 999999865
No 23
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=50.94 E-value=4.4 Score=32.59 Aligned_cols=8 Identities=13% Similarity=-0.147 Sum_probs=7.2
Q ss_pred cCCCCccc
Q 021649 274 MFLSLGPY 281 (309)
Q Consensus 274 pCPNCGee 281 (309)
-||.||||
T Consensus 53 kCP~CgEE 60 (95)
T 2k5c_A 53 KCPVCGEE 60 (95)
T ss_dssp ECTTTCCE
T ss_pred cCCCccHH
Confidence 49999998
No 24
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=45.44 E-value=12 Score=36.49 Aligned_cols=34 Identities=15% Similarity=-0.078 Sum_probs=27.2
Q ss_pred hhccceeeeccCCCCcc---ceeecccCCC--ceeeeee
Q 021649 264 IVRESLILKRMFLSLGP---YYQFLVVEPP--TLLTAQI 297 (309)
Q Consensus 264 ~~~D~liLKGpCPNCGe---e~aFv~~~~p--~~~~~~~ 297 (309)
-|++.+|+...||+||- +.++.+.-+| .-+|-.+
T Consensus 33 ~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V 71 (404)
T 2qkd_A 33 FFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTV 71 (404)
T ss_dssp TTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEE
T ss_pred CCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEE
Confidence 47999999999999993 6888888888 5555443
No 25
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=45.42 E-value=10 Score=35.39 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=18.5
Q ss_pred HHHHHHHhhhccceeeeccCCCCccc-eeecccCCCc
Q 021649 256 LSQSLTKLIVRESLILKRMFLSLGPY-YQFLVVEPPT 291 (309)
Q Consensus 256 ~a~~Lt~l~~~D~liLKGpCPNCGee-~aFv~~~~p~ 291 (309)
.|..||..|+.. .+-|||||.. .+=++-+.|.
T Consensus 22 ~aRVLTE~Wv~~----n~yCPnCG~~~l~~f~nN~PV 54 (257)
T 4esj_A 22 KARILTEDWVYR----QSYCPNCGNNPLNHFENNRPV 54 (257)
T ss_dssp HHHHHHHHHHHH----HCCCTTTCCSSCEEC----CC
T ss_pred eehhhhHHHHHH----CCcCCCCCChhhhhccCCCcc
Confidence 456777776643 4689999974 5555555553
No 26
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=44.07 E-value=8.5 Score=30.54 Aligned_cols=16 Identities=0% Similarity=-0.292 Sum_probs=11.0
Q ss_pred cCCCCccc-eeecccCC
Q 021649 274 MFLSLGPY-YQFLVVEP 289 (309)
Q Consensus 274 pCPNCGee-~aFv~~~~ 289 (309)
.||.||.. ..++.|+-
T Consensus 92 ~CP~Cgs~~~~i~~G~e 108 (119)
T 2kdx_A 92 VCEKCHSKNVIITQGNE 108 (119)
T ss_dssp CCSSSSSCCCEEEESSC
T ss_pred cCccccCCCcEEecCCe
Confidence 78888865 66666653
No 27
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=40.06 E-value=31 Score=28.23 Aligned_cols=75 Identities=11% Similarity=-0.011 Sum_probs=50.0
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 021649 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (309)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPim 160 (309)
+.-+..++|++-+-+-+. .... .+.-+++|+-+.|.. .|.++ ..++.|+.-|+...+......-+
T Consensus 63 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 137 (188)
T 3c1l_A 63 SGLSKLDREMIAVAVSSINHCYYCLTAHGAAVRQLSGDPALGEMLVM--NFRAA---DLSPRQTAMLEFAVKLTEEPAKI 137 (188)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHHH--CGGGG---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445666777776655321 1112 223567888777765 48887 36899999888877765544459
Q ss_pred ChHHHHHHHH
Q 021649 161 SDEEYDKLKQ 170 (309)
Q Consensus 161 sDeEFD~LK~ 170 (309)
+|+.|+.|++
T Consensus 138 ~d~~~~~l~~ 147 (188)
T 3c1l_A 138 VEADRAALRK 147 (188)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.82 E-value=8.2 Score=29.81 Aligned_cols=10 Identities=20% Similarity=-0.057 Sum_probs=8.5
Q ss_pred eccCCCCccc
Q 021649 272 KRMFLSLGPY 281 (309)
Q Consensus 272 KGpCPNCGee 281 (309)
.|+||-||..
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 7899999964
No 29
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=36.64 E-value=11 Score=28.09 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=9.3
Q ss_pred eeeccCCCCccc
Q 021649 270 ILKRMFLSLGPY 281 (309)
Q Consensus 270 iLKGpCPNCGee 281 (309)
-||..||+||+.
T Consensus 16 TLk~~CP~CG~~ 27 (60)
T 2apo_B 16 TLKEICPKCGEK 27 (60)
T ss_dssp ESSSBCSSSCSB
T ss_pred eccccCcCCCCc
Confidence 358889999975
No 30
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=34.45 E-value=35 Score=28.07 Aligned_cols=75 Identities=11% Similarity=0.001 Sum_probs=49.3
Q ss_pred cccchhHHHHHHHHHHH---------Hhhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 021649 91 EKKSLGELEQEFLQALQ---------AFYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (309)
Q Consensus 91 ~k~slge~E~~fl~Al~---------~fY~~-gk~~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPim 160 (309)
+.-+..++|++-+-.-+ ..... .+.-+++|+-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 66 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 140 (191)
T 2pfx_A 66 SQLSKLEREMIAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVM--NYRVA---PLDARQRVMLDFAAKMTRASAEI 140 (191)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 44566777777665532 11112 223567888777765 38877 47899998888877755433359
Q ss_pred ChHHHHHHHH
Q 021649 161 SDEEYDKLKQ 170 (309)
Q Consensus 161 sDeEFD~LK~ 170 (309)
+|+.|+.|+.
T Consensus 141 ~d~~~~~l~~ 150 (191)
T 2pfx_A 141 EEADREVLRS 150 (191)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 31
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=33.05 E-value=25 Score=34.29 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=24.1
Q ss_pred hhccceeeeccCCCCcc---ceeecccCCC--ceeeee
Q 021649 264 IVRESLILKRMFLSLGP---YYQFLVVEPP--TLLTAQ 296 (309)
Q Consensus 264 ~~~D~liLKGpCPNCGe---e~aFv~~~~p--~~~~~~ 296 (309)
-|++.+|+...|++||- +.++.+.-+| .-+|-.
T Consensus 241 ~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~ 278 (404)
T 2qkd_A 241 HFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLH 278 (404)
T ss_dssp TSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEE
T ss_pred CCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEE
Confidence 47999999999999993 5666666655 444433
No 32
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=32.87 E-value=13 Score=31.84 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=12.2
Q ss_pred ccCCCCccceeeccc
Q 021649 273 RMFLSLGPYYQFLVV 287 (309)
Q Consensus 273 GpCPNCGee~aFv~~ 287 (309)
-+||.|+.||++--+
T Consensus 28 P~CP~C~seytYeDg 42 (138)
T 2akl_A 28 PPCPQCNSEYTYEDG 42 (138)
T ss_dssp CCCTTTCCCCCEECS
T ss_pred CCCCCCCCcceEecC
Confidence 789999999877544
No 33
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=30.68 E-value=14 Score=26.71 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=8.0
Q ss_pred eccCCCCccc
Q 021649 272 KRMFLSLGPY 281 (309)
Q Consensus 272 KGpCPNCGee 281 (309)
-..||+|||.
T Consensus 27 l~~c~~cGe~ 36 (56)
T 3r8s_0 27 LSVDKTSGEK 36 (56)
T ss_dssp EEECTTTCCE
T ss_pred eeECCCCCCe
Confidence 3579999985
No 34
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=29.82 E-value=52 Score=27.22 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=50.8
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 021649 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (309)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPim 160 (309)
+.-+..++|++-+..-+. .+.. .+.-+++++-+.|.. .|.++ ..++.|+.-|+...+......-+
T Consensus 71 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 145 (196)
T 2oyo_A 71 GYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAV--NWRHA---DLTEREQALAAYAEKLTRHPAEV 145 (196)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777777665432 1122 223567777777765 48877 36899999888877766544459
Q ss_pred ChHHHHHHHHH
Q 021649 161 SDEEYDKLKQK 171 (309)
Q Consensus 161 sDeEFD~LK~k 171 (309)
+|+.|+.|++.
T Consensus 146 ~d~~~~~l~~~ 156 (196)
T 2oyo_A 146 TAADLEPLRAV 156 (196)
T ss_dssp CGGGGHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 99999998753
No 35
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=28.60 E-value=14 Score=27.33 Aligned_cols=9 Identities=0% Similarity=-0.175 Sum_probs=7.4
Q ss_pred cCCCCccce
Q 021649 274 MFLSLGPYY 282 (309)
Q Consensus 274 pCPNCGee~ 282 (309)
-||+|||.|
T Consensus 38 ~C~~CGE~~ 46 (78)
T 3ga8_A 38 YCVHCEESI 46 (78)
T ss_dssp EETTTCCEE
T ss_pred ECCCCCCEE
Confidence 599999864
No 36
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=28.10 E-value=41 Score=27.89 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=49.0
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 021649 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (309)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPim 160 (309)
+.-+..++|++-+-.-+. .... .+.-+++++-+.|... |.++ ..++.|+.-|+...+......-+
T Consensus 67 ~~L~~~~rELi~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~--~~~~---~~~~~era~l~~a~~lt~~~~~v 141 (197)
T 2prr_A 67 GGLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVN--YLKA---DIPPRQRAMLDFALKVCKASHEV 141 (197)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTHHHHHHHH--GGGS---SCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHh--hhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776655321 1111 2234677777777643 7877 36899999888877755433359
Q ss_pred ChHHHHHHHH
Q 021649 161 SDEEYDKLKQ 170 (309)
Q Consensus 161 sDeEFD~LK~ 170 (309)
+|+.|+.|++
T Consensus 142 ~d~~~~~l~~ 151 (197)
T 2prr_A 142 NEADFEALRE 151 (197)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 37
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.77 E-value=18 Score=26.89 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=9.0
Q ss_pred eeeccCCCCccc
Q 021649 270 ILKRMFLSLGPY 281 (309)
Q Consensus 270 iLKGpCPNCGee 281 (309)
-||..||+||+.
T Consensus 15 TLk~~CP~CG~~ 26 (60)
T 2aus_D 15 TLKETCPVCGEK 26 (60)
T ss_dssp ESSSBCTTTCSB
T ss_pred EccccCcCCCCc
Confidence 357788888875
No 38
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=26.64 E-value=82 Score=30.43 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhhhcCCCccCh---------HHHHHHHHHHhhhCCceeeecCceeecCCc
Q 021649 142 AEQKFLEASMAYVAGKPIMSD---------EEYDKLKQKLKMEGSEIVVEGPRCSLRSRK 192 (309)
Q Consensus 142 ~EQ~FLEA~~AY~~GkPimsD---------eEFD~LK~kLk~eGS~VVvk~PrCslr~~~ 192 (309)
|+|-.|-++.++.+|.-.+.+ +-|..+..+|+.-|-+|...+-...++|.+
T Consensus 318 D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~G~~ 377 (455)
T 3rmt_A 318 DEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGPT 377 (455)
T ss_dssp GGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEECSCC
T ss_pred HHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEECCC
Confidence 788899999999999999998 346666789999999998877777777653
No 39
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.35 E-value=26 Score=24.51 Aligned_cols=10 Identities=20% Similarity=-0.044 Sum_probs=8.3
Q ss_pred eccCCCCccc
Q 021649 272 KRMFLSLGPY 281 (309)
Q Consensus 272 KGpCPNCGee 281 (309)
.-+||.||..
T Consensus 15 ~~~Cp~Cg~~ 24 (57)
T 1qyp_A 15 KITCPKCGND 24 (57)
T ss_dssp ECCCTTTCCS
T ss_pred EeECCCCCCC
Confidence 5789999964
No 40
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=24.84 E-value=68 Score=25.18 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=32.5
Q ss_pred ccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHH
Q 021649 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKL 172 (309)
Q Consensus 116 ~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPimsDeEFD~LK~kL 172 (309)
+||-|+|+.|.|.+-.-.+ ...-+...+|...+-.|+.+ .+|.++.+|
T Consensus 46 l~s~e~ye~l~etl~LL~~-----~~~~~~L~~a~~~~~~G~~~----s~eev~~~l 93 (108)
T 3g5o_A 46 LVGADEWESLQETLYWLAQ-----PGIRESIAEADADIASGRTY----GEDEIRAEF 93 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHTCEE----CHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHcCCCc----CHHHHHHHh
Confidence 6788899998887543221 12335666677779999986 456677777
No 41
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=24.58 E-value=30 Score=33.32 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=37.5
Q ss_pred HHhhhcCcc-ccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHHhhhCCceeeecCc
Q 021649 107 QAFYYEGKA-VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPR 185 (309)
Q Consensus 107 ~~fY~~gk~-~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPimsDeEFD~LK~kLk~eGS~VVvk~Pr 185 (309)
..+-++.+. .-+.+||..|||| |..|-+||+| |++|.++=.+=++..+.+--
T Consensus 209 ~~w~~~~~~~~~~~~~~~~~~~e---------------------~~k~~~~k~~------~~~~~~~c~~~~~~~~~~~~ 261 (335)
T 3m1m_A 209 KEWLEGKKEEEDTVVEFEELRKE---------------------LVKRDSGKPV------EKIKEEICTKSPPKLIKEII 261 (335)
T ss_dssp HHHHCC-----------CHHHHH---------------------HHHHCCCCCH------HHHHHHHHTSCCCHHHHHHH
T ss_pred HHHhcCcccccccHHHHHHHHHH---------------------HHhhcCCCcH------HHHHHHHHHhhhhhceeeee
Confidence 344454444 3356677777766 3347778876 66777775555544444444
Q ss_pred eeecCCceeeccchhHHHH
Q 021649 186 CSLRSRKVYSDLSVDYLKM 204 (309)
Q Consensus 186 Cslr~~~vySDae~D~lKm 204 (309)
| -++.|+|...|.+|=
T Consensus 262 c---~~k~y~~~~~drsrg 277 (335)
T 3m1m_A 262 C---ENKTYADVNIDRSRG 277 (335)
T ss_dssp T---SCCCTTTTTCCHHHH
T ss_pred e---cCCchhhcccccccC
Confidence 4 467899999998874
No 42
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.65 E-value=24 Score=25.89 Aligned_cols=9 Identities=0% Similarity=-0.359 Sum_probs=7.1
Q ss_pred ccCCCCccc
Q 021649 273 RMFLSLGPY 281 (309)
Q Consensus 273 GpCPNCGee 281 (309)
..||+||+.
T Consensus 31 ~~c~~cGe~ 39 (60)
T 3v2d_5 31 VPCPECKAM 39 (60)
T ss_dssp EECTTTCCE
T ss_pred eECCCCCCe
Confidence 469999984
No 43
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=22.47 E-value=30 Score=24.46 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=17.6
Q ss_pred HHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCc
Q 021649 121 EFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPI 159 (309)
Q Consensus 121 efd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~~GkPi 159 (309)
.|..+|+.+ |+.-++|.++.+++.+|+....+-+|.
T Consensus 2 nFn~~k~k~---gg~~~fmT~~Qkk~y~amkkl~~~kP~ 37 (53)
T 1byy_A 2 NFNQQKKKF---GGQDIFMTEEQKKYYNAMKKLGSKKPQ 37 (53)
T ss_dssp --------------CCSCCCHHHHHHHHHHHTSCC----
T ss_pred cHHHHHHHh---cCCccccCHHHHHHHHHHHHHhccCCC
Confidence 467788885 445778899999999998876555553
No 44
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.39 E-value=26 Score=25.62 Aligned_cols=8 Identities=0% Similarity=-0.475 Sum_probs=6.5
Q ss_pred cCCCCccc
Q 021649 274 MFLSLGPY 281 (309)
Q Consensus 274 pCPNCGee 281 (309)
.||+||+.
T Consensus 32 ~c~~cG~~ 39 (60)
T 2zjr_Z 32 ECPQCHGK 39 (60)
T ss_dssp ECTTTCCE
T ss_pred ECCCCCCE
Confidence 59999975
No 45
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=20.76 E-value=1.7e+02 Score=21.55 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHHHHHhhhcCccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhh--hcCCCccChHHHHHH
Q 021649 103 LQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAY--VAGKPIMSDEEYDKL 168 (309)
Q Consensus 103 l~Al~~fY~~gk~~msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY--~~GkPimsDeEFD~L 168 (309)
..+...|=.+|.-.++-+||-.+=..+ | +++.| ++++... .+|.-.|+=+||-.+
T Consensus 101 ~~~F~~~D~d~~G~i~~~E~~~~l~~~---~-----~~~~~---~~~~~~~~D~d~dg~i~~~ef~~~ 157 (166)
T 3akb_A 101 HAALGVADTDGDGAVTVADTARALTAF---G-----VPEDL---ARQAAAALDTDGDGKVGETEIVPA 157 (166)
T ss_dssp HHHHHHHCSSSSSCCBHHHHHHHHHHT---T-----CCHHH---HHHHHHHHCTTCSSBCCHHHHHHH
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHHh---C-----CCHHH---HHHHHHHhCCCCCCcCcHHHHHHH
Confidence 334444434556678888876655553 3 34333 2222221 256666777777654
No 46
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.59 E-value=32 Score=26.66 Aligned_cols=12 Identities=8% Similarity=-0.089 Sum_probs=9.1
Q ss_pred eccCCCCcccee
Q 021649 272 KRMFLSLGPYYQ 283 (309)
Q Consensus 272 KGpCPNCGee~a 283 (309)
+=.||+||...-
T Consensus 27 ~y~Cp~CG~~~v 38 (83)
T 1vq8_Z 27 DHACPNCGEDRV 38 (83)
T ss_dssp CEECSSSCCEEE
T ss_pred cCcCCCCCCcce
Confidence 568999997533
Done!