Query 021649
Match_columns 309
No_of_seqs 73 out of 75
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 07:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ta8a_ d.142.2.2 (A:) Adenyla 96.6 0.00064 4.6E-08 59.4 4.1 27 148-174 20-47 (313)
2 d1b04a_ d.142.2.2 (A:) Adenyla 96.5 0.00072 5.2E-08 59.7 3.8 25 150-174 20-45 (312)
3 d1dgsa3 d.142.2.2 (A:1-314) Ad 95.8 0.0017 1.3E-07 57.4 2.5 26 149-174 20-46 (314)
4 d1ta8a_ d.142.2.2 (A:) Adenyla 95.5 0.0048 3.5E-07 53.7 4.3 36 94-129 10-45 (313)
5 d1b04a_ d.142.2.2 (A:) Adenyla 95.4 0.0057 4.1E-07 53.7 4.2 38 92-129 6-43 (312)
6 d1dgsa3 d.142.2.2 (A:1-314) Ad 93.4 0.019 1.4E-06 50.6 3.0 37 94-130 9-45 (314)
7 d1pfva3 g.41.1.1 (A:141-175) M 74.0 0.52 3.8E-05 30.4 1.1 14 271-284 1-14 (35)
8 d1rqga3 g.41.1.1 (A:139-173) M 69.6 0.69 5E-05 29.8 0.9 13 271-283 1-13 (35)
9 d2akla2 g.41.3.5 (A:3-40) Hypo 46.7 3 0.00022 27.2 0.9 16 273-288 4-19 (38)
10 d1zina2 g.41.2.1 (A:126-160) M 33.9 4.6 0.00034 25.4 0.3 10 274-283 4-13 (35)
11 d1s3ga2 g.41.2.1 (A:126-160) M 33.8 4.7 0.00034 25.4 0.3 10 274-283 4-13 (35)
12 d2qam01 g.41.8.5 (0:1-56) Ribo 32.8 5.8 0.00042 27.2 0.7 9 273-281 28-36 (56)
13 d1akya2 g.41.2.1 (A:131-168) M 32.3 6.5 0.00047 25.1 0.8 10 274-283 4-13 (38)
14 d1vmaa1 a.24.13.1 (A:1-81) Sig 32.2 24 0.0017 24.7 4.1 38 142-182 14-51 (81)
15 d2ak3a2 g.41.2.1 (A:125-161) M 31.8 5.1 0.00037 25.5 0.2 10 274-283 4-13 (37)
16 d1e4va2 g.41.2.1 (A:122-156) M 29.4 5.9 0.00043 24.9 0.2 10 274-283 4-13 (35)
17 d1xaka_ b.1.24.1 (A:) Accessor 27.4 11 0.00078 26.6 1.3 15 264-278 10-24 (68)
18 d1nuia2 g.41.3.2 (A:10-63) Zin 26.7 11 0.00083 25.7 1.3 13 269-281 2-14 (54)
19 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 24.6 9.8 0.00071 26.2 0.7 8 274-281 31-38 (58)
20 d2ey4e1 g.41.16.1 (E:4-55) Rib 24.3 11 0.0008 25.8 0.9 12 270-281 12-23 (52)
21 d2k4xa1 g.41.8.8 (A:1-55) Ribo 24.3 11 0.00079 26.1 0.9 12 269-280 15-26 (55)
22 d1vkra_ c.44.2.1 (A:) PTS syst 24.0 21 0.0015 25.8 2.5 23 153-175 72-94 (97)
23 d1nyaa_ a.39.1.5 (A:) Caleryth 23.3 33 0.0024 24.3 3.5 34 117-154 133-166 (176)
24 d1okra_ a.4.5.39 (A:) Methicil 22.0 19 0.0014 26.0 1.9 75 95-173 5-118 (120)
25 d2vlqa1 a.28.2.1 (A:4-84) ImmE 21.8 34 0.0025 25.0 3.3 29 98-128 8-36 (81)
26 d2j0151 g.41.8.5 (5:2-60) Ribo 21.7 13 0.00093 25.6 0.8 9 273-281 30-38 (59)
27 d1nnqa2 g.41.5.1 (A:135-171) R 21.0 19 0.0014 22.7 1.5 15 274-291 7-21 (37)
28 d1nkua_ a.96.1.4 (A:) 3-Methyl 20.3 23 0.0017 29.1 2.2 82 94-180 48-157 (187)
29 d2apob1 g.41.16.1 (B:403-457) 20.1 15 0.0011 25.3 0.9 12 270-281 14-25 (55)
No 1
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]}
Probab=96.61 E-value=0.00064 Score=59.44 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.1
Q ss_pred HHHHhhh-cCCCccChHHHHHHHHHHhh
Q 021649 148 EASMAYV-AGKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 148 EA~~AY~-~GkPimsDeEFD~LK~kLk~ 174 (309)
++-.+|| .|+|+|||+|||.|+.+|+.
T Consensus 20 ~~~~~Yy~~~~p~iSD~eYD~L~~~L~~ 47 (313)
T d1ta8a_ 20 QYSHEYYVKDQPSVEDYVYDRLYKELVD 47 (313)
T ss_dssp HHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4456788 59999999999999999975
No 2
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=96.52 E-value=0.00072 Score=59.68 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.1
Q ss_pred HHhhhc-CCCccChHHHHHHHHHHhh
Q 021649 150 SMAYVA-GKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 150 ~~AY~~-GkPimsDeEFD~LK~kLk~ 174 (309)
-.+||. |+|+|||+|||.|+++|+.
T Consensus 20 ~~~Yy~~~~p~isD~eYD~L~~~L~~ 45 (312)
T d1b04a_ 20 GYEYYVLDRPSVPDAEYDRLMQELIA 45 (312)
T ss_dssp HHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 457886 9999999999999999965
No 3
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=95.79 E-value=0.0017 Score=57.40 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=22.6
Q ss_pred HHHhhhc-CCCccChHHHHHHHHHHhh
Q 021649 149 ASMAYVA-GKPIMSDEEYDKLKQKLKM 174 (309)
Q Consensus 149 A~~AY~~-GkPimsDeEFD~LK~kLk~ 174 (309)
+-.+||. |+|+|||++||.|+.+|+.
T Consensus 20 ~~~~YY~~~~p~IsD~~YD~L~~eL~~ 46 (314)
T d1dgsa3 20 HNYRYYVLADPEISDAEYDRLLRELKE 46 (314)
T ss_dssp HHHHHHTTCCCCSCSSSSHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3557985 9999999999999999975
No 4
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]}
Probab=95.52 E-value=0.0048 Score=53.69 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 021649 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (309)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL 129 (309)
-+.+++..--++=.+||+.|.++|||+|||.|+++|
T Consensus 10 ~~~~L~~~i~~~~~~Yy~~~~p~iSD~eYD~L~~~L 45 (313)
T d1ta8a_ 10 RAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKEL 45 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 356777777888889999999999999999999987
No 5
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=95.35 E-value=0.0057 Score=53.74 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 021649 92 KKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (309)
Q Consensus 92 k~slge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL 129 (309)
++-+.|++..--.+=.+||+.|.|+|||+|||.|+++|
T Consensus 6 ~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L 43 (312)
T d1b04a_ 6 ERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQEL 43 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 44567788777788889999999999999999999997
No 6
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=93.41 E-value=0.019 Score=50.55 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 021649 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (309)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~ 130 (309)
-+-+++..--.+=.+||..|.|+|||+|||.|++||.
T Consensus 9 ~i~~L~~~i~~~~~~YY~~~~p~IsD~~YD~L~~eL~ 45 (314)
T d1dgsa3 9 RINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELK 45 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3455555555666888889999999999999999874
No 7
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=73.96 E-value=0.52 Score=30.42 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=11.2
Q ss_pred eeccCCCCccceee
Q 021649 271 LKRMFLSLGPYYQF 284 (309)
Q Consensus 271 LKGpCPNCGee~aF 284 (309)
++|.||.|+.+-|+
T Consensus 1 V~G~CP~C~~~~a~ 14 (35)
T d1pfva3 1 VKGTCPKCKSPDQY 14 (35)
T ss_dssp EEEECTTTCCSSEE
T ss_pred CeeECCCCCCcccc
Confidence 58999999977554
No 8
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=69.55 E-value=0.69 Score=29.78 Aligned_cols=13 Identities=15% Similarity=-0.107 Sum_probs=10.4
Q ss_pred eeccCCCCcccee
Q 021649 271 LKRMFLSLGPYYQ 283 (309)
Q Consensus 271 LKGpCPNCGee~a 283 (309)
++|.||.||.+-|
T Consensus 1 V~G~CP~C~~~~a 13 (35)
T d1rqga3 1 VIGTCPYCGAEDQ 13 (35)
T ss_dssp CCSBCSSSCCSCC
T ss_pred CeEECCCCCCCcc
Confidence 4799999997644
No 9
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=46.73 E-value=3 Score=27.21 Aligned_cols=16 Identities=6% Similarity=-0.116 Sum_probs=12.1
Q ss_pred ccCCCCccceeecccC
Q 021649 273 RMFLSLGPYYQFLVVE 288 (309)
Q Consensus 273 GpCPNCGee~aFv~~~ 288 (309)
-+||.|+.+|++=-+.
T Consensus 4 P~CP~C~seytYedg~ 19 (38)
T d2akla2 4 PPCPQCNSEYTYEDGA 19 (38)
T ss_dssp CCCTTTCCCCCEECSS
T ss_pred CcCCCCCCcceEcCCC
Confidence 3799999998775443
No 10
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.90 E-value=4.6 Score=25.42 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=8.1
Q ss_pred cCCCCcccee
Q 021649 274 MFLSLGPYYQ 283 (309)
Q Consensus 274 pCPNCGee~a 283 (309)
.||+||+.|-
T Consensus 4 ~C~~CG~~Yh 13 (35)
T d1zina2 4 ICRNCGATYH 13 (35)
T ss_dssp EETTTCCEEE
T ss_pred CCcCcCchhc
Confidence 4999999754
No 11
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=33.76 E-value=4.7 Score=25.36 Aligned_cols=10 Identities=20% Similarity=0.364 Sum_probs=8.2
Q ss_pred cCCCCcccee
Q 021649 274 MFLSLGPYYQ 283 (309)
Q Consensus 274 pCPNCGee~a 283 (309)
-||+||+.|-
T Consensus 4 ~C~~CG~~Yh 13 (35)
T d1s3ga2 4 ICKVCGTSYH 13 (35)
T ss_dssp EETTTCCEEE
T ss_pred CCcCcCchhc
Confidence 4999999864
No 12
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=32.79 E-value=5.8 Score=27.18 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=7.3
Q ss_pred ccCCCCccc
Q 021649 273 RMFLSLGPY 281 (309)
Q Consensus 273 GpCPNCGee 281 (309)
-.||||||.
T Consensus 28 ~~c~~CG~~ 36 (56)
T d2qam01 28 SVDKTSGEK 36 (56)
T ss_dssp EECSSSCCE
T ss_pred eECCCCCCC
Confidence 369999985
No 13
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.30 E-value=6.5 Score=25.13 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=8.1
Q ss_pred cCCCCcccee
Q 021649 274 MFLSLGPYYQ 283 (309)
Q Consensus 274 pCPNCGee~a 283 (309)
.||+||+.|-
T Consensus 4 ~C~~cG~~Yh 13 (38)
T d1akya2 4 IHPASGRSYH 13 (38)
T ss_dssp ECTTTCCEEE
T ss_pred CCcCccchhh
Confidence 4999999854
No 14
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=32.20 E-value=24 Score=24.70 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=27.1
Q ss_pred hhHHHHHHHHhhhcCCCccChHHHHHHHHHHhhhCCceeee
Q 021649 142 AEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVE 182 (309)
Q Consensus 142 ~EQ~FLEA~~AY~~GkPimsDeEFD~LK~kLk~eGS~VVvk 182 (309)
--..|-+.+.+-+.|++ ++|+-||+|++-| --|+|.++
T Consensus 14 Tr~~~~~~l~~lf~~~~-iDe~~leeLEe~L--I~aDvGv~ 51 (81)
T d1vmaa1 14 TKETFFGRVVKLLKGKK-LDDETREELEELL--IQADVGVE 51 (81)
T ss_dssp HHHHTHHHHHHHHTTCC-CCHHHHHHHHHHH--HHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH--HHccCCHH
Confidence 33455566666666775 8999999999999 45566553
No 15
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=31.83 E-value=5.1 Score=25.55 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=8.0
Q ss_pred cCCCCcccee
Q 021649 274 MFLSLGPYYQ 283 (309)
Q Consensus 274 pCPNCGee~a 283 (309)
-||+||+.|-
T Consensus 4 vc~~cG~~Yh 13 (37)
T d2ak3a2 4 IHPGSGRVYN 13 (37)
T ss_dssp EETTTTEEEE
T ss_pred eeCCcCChhh
Confidence 4999999754
No 16
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=29.44 E-value=5.9 Score=24.86 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.0
Q ss_pred cCCCCcccee
Q 021649 274 MFLSLGPYYQ 283 (309)
Q Consensus 274 pCPNCGee~a 283 (309)
-||+||+.|-
T Consensus 4 ~c~~cG~~Yh 13 (35)
T d1e4va2 4 VHAPSGRVYH 13 (35)
T ss_dssp EETTTTEEEE
T ss_pred CCcCcCChhh
Confidence 4999999754
No 17
>d1xaka_ b.1.24.1 (A:) Accessory protein X4 (ORF8, ORF7a) {SARS coronavirus [TaxId: 227859]}
Probab=27.39 E-value=11 Score=26.65 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=12.4
Q ss_pred hhccceeeeccCCCC
Q 021649 264 IVRESLILKRMFLSL 278 (309)
Q Consensus 264 ~~~D~liLKGpCPNC 278 (309)
.++-.+|||-|||+=
T Consensus 10 vrgttvilkepcpsg 24 (68)
T d1xaka_ 10 VRGTTVILKEPCPSG 24 (68)
T ss_dssp ETTSEEEEECSSTTC
T ss_pred hcCceEEEecCCCCC
Confidence 456789999999984
No 18
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]}
Probab=26.74 E-value=11 Score=25.66 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=9.8
Q ss_pred eeeeccCCCCccc
Q 021649 269 LILKRMFLSLGPY 281 (309)
Q Consensus 269 liLKGpCPNCGee 281 (309)
.+-.-|||+||.-
T Consensus 2 Fv~H~pCp~CgSS 14 (54)
T d1nuia2 2 FLYHIPCDNCGSS 14 (54)
T ss_dssp EEEEECCSSSCCS
T ss_pred cccccCCCCCCCC
Confidence 3557899999953
No 19
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=24.62 E-value=9.8 Score=26.18 Aligned_cols=8 Identities=0% Similarity=-0.475 Sum_probs=6.4
Q ss_pred cCCCCccc
Q 021649 274 MFLSLGPY 281 (309)
Q Consensus 274 pCPNCGee 281 (309)
.|||||+.
T Consensus 31 ~C~~CG~~ 38 (58)
T d2zjrz1 31 ECPQCHGK 38 (58)
T ss_dssp ECTTTCCE
T ss_pred ECCCCCCC
Confidence 49999974
No 20
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.29 E-value=11 Score=25.80 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=9.5
Q ss_pred eeeccCCCCccc
Q 021649 270 ILKRMFLSLGPY 281 (309)
Q Consensus 270 iLKGpCPNCGee 281 (309)
-||-.||.||+.
T Consensus 12 TL~~~CP~CG~~ 23 (52)
T d2ey4e1 12 TLKEVCPVCGEK 23 (52)
T ss_dssp ESSSBCTTTCCB
T ss_pred eccccCcCCCCc
Confidence 467889999975
No 21
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}
Probab=24.28 E-value=11 Score=26.15 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=9.3
Q ss_pred eeeeccCCCCcc
Q 021649 269 LILKRMFLSLGP 280 (309)
Q Consensus 269 liLKGpCPNCGe 280 (309)
+-+.-.||+||+
T Consensus 15 ~r~~k~CP~CG~ 26 (55)
T d2k4xa1 15 VRKHRFCPRCGP 26 (55)
T ss_dssp CCSSCCCTTTTT
T ss_pred EEecCcCcCCCC
Confidence 345678999996
No 22
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}
Probab=24.04 E-value=21 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=19.7
Q ss_pred hhcCCCccChHHHHHHHHHHhhh
Q 021649 153 YVAGKPIMSDEEYDKLKQKLKME 175 (309)
Q Consensus 153 Y~~GkPimsDeEFD~LK~kLk~e 175 (309)
.+.-+.+|+++|||++.++|+++
T Consensus 72 vi~v~n~l~~~ei~~l~e~i~~~ 94 (97)
T d1vkra_ 72 HISLTNFLDSGLYTSLTERLVAA 94 (97)
T ss_dssp EEEESCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEecCChHHHHHHHHHHHHH
Confidence 55668889999999999999874
No 23
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=23.26 E-value=33 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=19.0
Q ss_pred cChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhh
Q 021649 117 MSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYV 154 (309)
Q Consensus 117 msneefd~LkEeL~WeGSsvv~L~~~EQ~FLEA~~AY~ 154 (309)
++++|.+.+=+.+...|...|.. ++|+.++..|+
T Consensus 133 ~~~~~~~~~f~~~D~d~dG~i~~----~Ef~~~~~~~~ 166 (176)
T d1nyaa_ 133 MSKAEAAEAFNQVDTNGNGELSL----DELLTAVRDFH 166 (176)
T ss_dssp CCHHHHHHHHHHHCTTCSSEEEH----HHHHHHHSCCS
T ss_pred CcHHHHHHHHHHHCCCCCCcEeH----HHHHHHHHHHh
Confidence 45555555555555566655544 35666666644
No 24
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=21.96 E-value=19 Score=26.02 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhhhcCCeeEEe-------------------------ChhhHH---H
Q 021649 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVML-------------------------SSAEQK---F 146 (309)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~WeGSsvv~L-------------------------~~~EQ~---F 146 (309)
|.+-|...+..||. .| +....|--+.|.++-.|.-+.|.++ ++++.. .
T Consensus 5 lt~~E~~VM~~lW~---~~-~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~~~Y~~~~~~~~~~~~~~ 80 (120)
T d1okra_ 5 ISSAEWEVMNIIWM---KK-YASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 80 (120)
T ss_dssp CCHHHHHHHHHHHH---HS-SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc---CC-CCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEEecCCceEEeecCCHHHHHHHHH
Confidence 45677888888885 34 4555776777777767765554322 233311 2
Q ss_pred HHHHHhhhcCCCc-----------cChHHHHHHHHHHh
Q 021649 147 LEASMAYVAGKPI-----------MSDEEYDKLKQKLK 173 (309)
Q Consensus 147 LEA~~AY~~GkPi-----------msDeEFD~LK~kLk 173 (309)
.+.+..+++|.+- +|++|.+.|+.-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~el~~L~~lL~ 118 (120)
T d1okra_ 81 KNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILN 118 (120)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHccCCCHHHHHHHHHHHh
Confidence 2223346666543 88889888888775
No 25
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=21.84 E-value=34 Score=24.99 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhcCccccChHHHhhhHhh
Q 021649 98 LEQEFLQALQAFYYEGKAVMSNEEFDNLKEE 128 (309)
Q Consensus 98 ~E~~fl~Al~~fY~~gk~~msneefd~LkEe 128 (309)
-|.+|++-+..+++.... ++++.|.|=+.
T Consensus 8 TE~EFl~fl~~i~~~~~~--te~~~d~l~~h 36 (81)
T d2vlqa1 8 TEAEFLQLVTTICNADTS--SEEELVKLVTH 36 (81)
T ss_dssp CHHHHHHHHHHHHHTCSS--SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 389999999999987765 57777776443
No 26
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=21.66 E-value=13 Score=25.60 Aligned_cols=9 Identities=0% Similarity=-0.359 Sum_probs=6.8
Q ss_pred ccCCCCccc
Q 021649 273 RMFLSLGPY 281 (309)
Q Consensus 273 GpCPNCGee 281 (309)
..|||||+.
T Consensus 30 ~~C~~CG~~ 38 (59)
T d2j0151 30 VPCPECKAM 38 (59)
T ss_dssp BCCSSSSSC
T ss_pred eECCCCCCc
Confidence 469999973
No 27
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.01 E-value=19 Score=22.72 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=9.7
Q ss_pred cCCCCccceeecccCCCc
Q 021649 274 MFLSLGPYYQFLVVEPPT 291 (309)
Q Consensus 274 pCPNCGee~aFv~~~~p~ 291 (309)
-|++||-.+. ++.|.
T Consensus 7 ~C~vCG~i~~---g~~P~ 21 (37)
T d1nnqa2 7 ICPICGYTAV---DEAPE 21 (37)
T ss_dssp ECTTTCCEEE---SCCCS
T ss_pred ECCCCCCEec---CCCCC
Confidence 4899997643 35554
No 28
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=20.31 E-value=23 Score=29.06 Aligned_cols=82 Identities=20% Similarity=0.365 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhhhcCCeeEEeChh-h------HHHHH----------HHHhhhcC
Q 021649 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSA-E------QKFLE----------ASMAYVAG 156 (309)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~msneefd~LkEeL~WeGSsvv~L~~~-E------Q~FLE----------A~~AY~~G 156 (309)
++=-|-..|-+|...|=.+.-+.|++++.++|-.+ .| +|.=..+ + +.+|+ =+-+|.+|
T Consensus 48 ~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~Ll~d---~~--IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~ 122 (187)
T d1nkua_ 48 TVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQD---AG--IIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNH 122 (187)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTCCHHHHHHHHTC---CS--SCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHcCCHHHHHHHhcc---CC--eeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 56677888999999999999999999999999876 33 3321111 1 22222 13368899
Q ss_pred CCccC-----------hHHHHHHHHHHhhhCCcee
Q 021649 157 KPIMS-----------DEEYDKLKQKLKMEGSEIV 180 (309)
Q Consensus 157 kPims-----------DeEFD~LK~kLk~eGS~VV 180 (309)
+|++. .++-+.|=..||..|.+.|
T Consensus 123 ~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFv 157 (187)
T d1nkua_ 123 QPQMTQATTLSEIPTSTPASDALSKALKKRGFKFV 157 (187)
T ss_dssp CCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeec
Confidence 99975 4888999999999998765
No 29
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.13 E-value=15 Score=25.32 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=9.2
Q ss_pred eeeccCCCCccc
Q 021649 270 ILKRMFLSLGPY 281 (309)
Q Consensus 270 iLKGpCPNCGee 281 (309)
-|+-.||.||+.
T Consensus 14 TL~~~CP~CG~~ 25 (55)
T d2apob1 14 TLKEICPKCGEK 25 (55)
T ss_dssp ESSSBCSSSCSB
T ss_pred eccccCcCCCCc
Confidence 367789999964
Done!