Query 021650
Match_columns 309
No_of_seqs 131 out of 285
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 2E-101 4E-106 726.9 23.1 305 1-308 172-477 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 6.3E-39 1.4E-43 298.0 10.7 133 1-147 124-256 (256)
3 KOG1349 Gpi-anchor transamidas 99.8 3.7E-21 7.9E-26 175.8 6.3 131 2-148 157-291 (309)
4 COG5206 GPI8 Glycosylphosphati 99.6 2.4E-16 5.2E-21 145.3 5.8 129 3-147 158-290 (382)
5 PF00656 Peptidase_C14: Caspas 93.0 0.2 4.4E-06 44.9 5.6 92 12-117 103-230 (248)
6 PF12554 MOZART1: Mitotic-spin 58.2 18 0.00038 25.5 3.7 26 265-290 21-46 (48)
7 smart00115 CASc Caspase, inter 30.0 1.9E+02 0.0041 26.5 6.9 75 28-117 119-213 (241)
8 KOG1655 Protein involved in va 25.5 1.7E+02 0.0036 26.8 5.4 54 167-221 35-88 (218)
9 PF10116 Host_attach: Protein 23.7 94 0.002 25.8 3.4 29 8-36 74-102 (138)
10 PF15121 TMEM71: TMEM71 protei 22.0 62 0.0014 27.7 1.9 51 6-67 94-147 (149)
11 PF06866 DUF1256: Protein of u 21.6 1.3E+02 0.0028 26.5 3.9 32 5-37 66-97 (163)
12 cd00032 CASc Caspase, interleu 20.2 3.4E+02 0.0073 24.8 6.6 97 6-117 97-217 (243)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-101 Score=726.92 Aligned_cols=305 Identities=55% Similarity=0.992 Sum_probs=291.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceEEEEeecccCcccCCCCCCCCcEEEEccCCCCccccccCCCCCCCCCCcccc
Q 021650 1 MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYI 80 (309)
Q Consensus 1 ~P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~ 80 (309)
||+++.|||+||+++|++||+.|+|++||||||||||||||||+||+|+|||||||||++|||||+|||+++|.||.++.
T Consensus 172 mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~ 251 (477)
T KOG1348|consen 172 MPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYS 251 (477)
T ss_pred cCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhhhcccccccccCHHHHHHHHHHhhcCCCCCCCCCCcccccCCcccccccccccccCCCCCCCC-CCCC
Q 021650 81 TCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP-PNKL 159 (309)
Q Consensus 81 tcLgD~fS~~wme~~~~~~~~~~tl~~~~~~v~~~t~~~~~~~~~Shv~~yGd~~~~~~~~~~f~g~~~~~~~~~-~~~~ 159 (309)
|||||+|||+||||||.||+++|||.+||+.||+||+.. |+.|||||||||..|+++.|..|||.+|++.+++ +..+
T Consensus 252 tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s--~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~~~s 329 (477)
T KOG1348|consen 252 TCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTS--YSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLPASS 329 (477)
T ss_pred cccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCC--CCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCCccC
Confidence 999999999999999999999999999999999999854 7779999999999999999999999999998876 2333
Q ss_pred CCCccccccccchhHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccCCCCC
Q 021650 160 QPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPL 239 (309)
Q Consensus 160 ~~~~~~~v~srDa~L~~L~~kl~~a~~~~~~k~~a~~eL~~~l~~R~~id~~v~~I~~~l~g~~~~~~vL~~~~~~g~~~ 239 (309)
..++++.+||||++|++||+|++++++++.++.+++++|.++++||++||++|..|+.++|+. .+..+|+.+|+.|+|+
T Consensus 330 ~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Pl 408 (477)
T KOG1348|consen 330 HKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPL 408 (477)
T ss_pred cCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCc
Confidence 344567899999999999999999999998899999999999999999999999999999998 4457899999999999
Q ss_pred cCccchHHHHHHHHhhhcCCccchhhhHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCcccccCCC
Q 021650 240 VDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHPAIRGYS 308 (309)
Q Consensus 240 v~d~dCyk~~V~~Fe~~Cg~l~~Y~lk~~~~faNLC~~g~~~~~i~~Ai~~~C~~~~~~~~~~~~~~~~ 308 (309)
+|||+|+|.+|++|++|||+++||||||+|+|+||||.|++.++|..|+.++|..+...+|.+..+|||
T Consensus 409 vddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs 477 (477)
T KOG1348|consen 409 VDDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS 477 (477)
T ss_pred cchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=6.3e-39 Score=298.00 Aligned_cols=133 Identities=45% Similarity=0.746 Sum_probs=127.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceEEEEeecccCcccCCCCCCCCcEEEEccCCCCccccccCCCCCCCCCCcccc
Q 021650 1 MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYI 80 (309)
Q Consensus 1 ~P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~ 80 (309)
||+++.|+++||+++|++|+++++|||||||||||+|||||++ |++++|||++|||+++|+||++||++ ++++
T Consensus 124 ~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~~------~~~~ 196 (256)
T PF01650_consen 124 FPDGEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSFFEG-LLKSPNVYVITAANADESSYGCYCSD------DSIG 196 (256)
T ss_pred CCCcccccHHHHHHHHHHHHhhCCcceEEEEEecccccchhhc-cCCCCCEEEEecCCcccccccccccc------cccc
Confidence 6878899999999999999999999999999999999999999 78999999999999999999999932 3699
Q ss_pred ccccchhhhhhhhhcccccccccCHHHHHHHHHHhhcCCCCCCCCCCcccccCCccccccccccccc
Q 021650 81 TCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGF 147 (309)
Q Consensus 81 tcLgD~fS~~wme~~~~~~~~~~tl~~~~~~v~~~t~~~~~~~~~Shv~~yGd~~~~~~~~~~f~g~ 147 (309)
+||||+||.+||++++.++++.+||.+||+.||++|. +|||++|||.++.+++|++|+|.
T Consensus 197 ~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~~~~-------~shv~~~gd~s~~~~~v~~f~g~ 256 (256)
T PF01650_consen 197 TYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKRKTT-------GSHVQQYGDPSIPQLPVSEFQGT 256 (256)
T ss_pred cEeHHHHHHHhhhhhccCCccccCHHHHHHHHHHhcc-------cchHHhcCCCCccccCHHHhcCC
Confidence 9999999999999999999999999999999999998 89999999999999999999984
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.7e-21 Score=175.77 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=118.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceEEEEeecccCcccCCCCCCCCcEEEEccCCCCccccccCCCCCCCCCCccccc
Q 021650 2 PNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYIT 81 (309)
Q Consensus 2 P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~t 81 (309)
-+.++|+.+||+++|+||||++||+||+|+|++|++.|||+.+..+ ||+|+.+|.-+|+||+++-|++ ||+
T Consensus 157 qd~eelts~dLadai~qm~e~~Ryneil~miDTCQaasly~~~~sP--NVLav~SS~~ge~SySh~~d~~-------Igv 227 (309)
T KOG1349|consen 157 QDAEELTSDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYSP--NVLAVASSLVGEPSYSHHSDSD-------IGV 227 (309)
T ss_pred ccHHHhhhHHHHHHHHHHHHhhhhceEEEEeeccchHHHHHhhcCC--CeEEEeecccCCcccccCCCcc-------cce
Confidence 3557899999999999999999999999999999999999997654 8999999999999999999974 999
Q ss_pred cccchhhhhhhhhcccc-cccccCHHHHHHHHHHhhcCCCCCCCCCCcccccCC---cccccccccccccC
Q 021650 82 CLGDLYSVAWMEDSETH-NLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNT---SVKSEKLYLYQGFD 148 (309)
Q Consensus 82 cLgD~fS~~wme~~~~~-~~~~~tl~~~~~~v~~~t~~~~~~~~~Shv~~yGd~---~~~~~~~~~f~g~~ 148 (309)
.+.|+|++..+++.++. +....||+++|+.+.++.- +||+...-|+ +..+.++.+|+|..
T Consensus 228 ~vIDrftyy~l~flek~~~~~~~~l~dl~~s~~~~~~-------~St~gvr~dl~~r~~~~v~itDFFg~v 291 (309)
T KOG1349|consen 228 YVIDRFTYYTLEFLEKGIGAKNRTLQDLFDSCPKRLL-------GSTPGVRTDLYQRDPKDVLITDFFGSV 291 (309)
T ss_pred eeeccchHHHHHHHHhcccchhhhHHHHHHhCChhhh-------cCCcCcccccccCCcccceeeeecccc
Confidence 99999999999999984 6666699999999999998 8999888787 56688899999964
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-16 Score=145.28 Aligned_cols=129 Identities=11% Similarity=0.154 Sum_probs=109.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceEEEEeecccCcccCCCCCCCCcEEEEccCCCCccccccCCCCCCCCCCcccccc
Q 021650 3 NMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITC 82 (309)
Q Consensus 3 ~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~tc 82 (309)
+-++++.+||+++|++|+++|||++++|+|++|++.+|+.....+ ||+|+.+|.-++|||+++.|. ++|+-
T Consensus 158 daeemtseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~ysP--NvLavgsSeig~ssyShhsd~-------~Igva 228 (382)
T COG5206 158 DAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSP--NVLAVGSSEIGQSSYSHHSDS-------LIGVA 228 (382)
T ss_pred cHHHhhhHHHHHHHHHHHHhhhhceEEEEeeccccchhhhhccCC--ceEEEeccccCCccccccchh-------hhhHH
Confidence 446899999999999999999999999999999999999987654 899999999999999999987 48999
Q ss_pred ccchhhhhhhhhcccc-cccccCHHHHHHHHHHhhcCCCCCCCCCCcccccCC---ccccccccccccc
Q 021650 83 LGDLYSVAWMEDSETH-NLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNT---SVKSEKLYLYQGF 147 (309)
Q Consensus 83 LgD~fS~~wme~~~~~-~~~~~tl~~~~~~v~~~t~~~~~~~~~Shv~~yGd~---~~~~~~~~~f~g~ 147 (309)
..|+|++.++++.++. ..++-||++++...-..-. +|||...-+. +=++-.+.+|+|.
T Consensus 229 VIDrFty~~l~fle~id~~skltlqDL~~s~n~e~i-------hS~~gv~~~~fdr~p~d~litDFF~n 290 (382)
T COG5206 229 VIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNKEPI-------HSHVGVRELVFDRRPSDFLITDFFAN 290 (382)
T ss_pred HhhcchHHHHHHHhhcCcCCeeEHHHHHHhcCcccc-------cCCCCcccccccCCccceeehHhhhh
Confidence 9999999999888874 5689999999998887776 8999654332 2223446888875
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=92.95 E-value=0.2 Score=44.89 Aligned_cols=92 Identities=20% Similarity=0.349 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCC-CC-ceEEEEeecccCcccCCC----------------------------CCCCCcEEEEccCCCCc
Q 021650 12 FIDVLKKKHAAKS-YK-GMVIYVEACESGSIFEGV----------------------------MPKDLDIYVTTASNAQE 61 (309)
Q Consensus 12 L~~~l~~M~~~~~-Y~-~lvfyiEaC~SgSmf~~~----------------------------lp~~~niya~TAan~~E 61 (309)
+.+.|+.+..+.. =+ + +|++++|+||.+-.+. .+...+++.++|+.+.|
T Consensus 103 ~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~ 181 (248)
T PF00656_consen 103 LDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQ 181 (248)
T ss_dssp HHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTB
T ss_pred HHHHHhhhhhhhccCCcc-EEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEEeccccc
Confidence 5555655555511 12 3 9999999999987631 12345899999999999
Q ss_pred cccccCCCCCCCCCCccccccccchhhhhhhhhcccc------cccccCHHHHHHHHHHhhc
Q 021650 62 SSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETH------NLKRETISQQYQAVKERTS 117 (309)
Q Consensus 62 sS~~~~c~~~~~~~~~~~~tcLgD~fS~~wme~~~~~------~~~~~tl~~~~~~v~~~t~ 117 (309)
.||.. ++ .=+-+|+.++++-+..+ .....+|.+++..|++++.
T Consensus 182 ~s~e~--~~-----------~~~g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 230 (248)
T PF00656_consen 182 TSYED--SP-----------GSGGLFTYALLEALKGNAADDPNQSWDELLEELLTEVNQKVA 230 (248)
T ss_dssp CEEEE--CT-----------TTEEHHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHHHHHHHH
T ss_pred eeecc--cC-----------ccCHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHhHCC
Confidence 99988 22 12336999999988432 2346789999999999884
No 6
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=58.24 E-value=18 Score=25.53 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHH
Q 021650 265 MKHMRAFANICNSGVSQALMEETSEA 290 (309)
Q Consensus 265 lk~~~~faNLC~~g~~~~~i~~Ai~~ 290 (309)
...+....+||+.|+.++..++.|..
T Consensus 21 ~etL~ici~L~e~GVnPeaLA~vI~e 46 (48)
T PF12554_consen 21 RETLSICIELCENGVNPEALAAVIKE 46 (48)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35788999999999999998888765
No 7
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=30.05 E-value=1.9e+02 Score=26.52 Aligned_cols=75 Identities=12% Similarity=0.258 Sum_probs=44.6
Q ss_pred eEEEEeecccCcccCCC--------------------CCCCCcEEEEccCCCCccccccCCCCCCCCCCccccccccchh
Q 021650 28 MVIYVEACESGSIFEGV--------------------MPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLY 87 (309)
Q Consensus 28 lvfyiEaC~SgSmf~~~--------------------lp~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~tcLgD~f 87 (309)
=+|+|+||...-.-.|+ +|...+++..-|+-|..-||.. +..|+ +|
T Consensus 119 KlffiqACRg~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~D~li~ysT~pG~va~r~----------~~~gS----~f 184 (241)
T smart00115 119 KLFFIQACRGDELDGGVPVEDDVDDPPTEFEDDAIYKIPVEADFLAAYSTTPGYVSWRN----------PTRGS----WF 184 (241)
T ss_pred cEEEEeCCCCCCCCCCeecccccccccccccccccccCCCcCcEEEEEeCCCCeEeecC----------CCCCc----hH
Confidence 48999999753221121 3444455555555555444321 11333 46
Q ss_pred hhhhhhhcccccccccCHHHHHHHHHHhhc
Q 021650 88 SVAWMEDSETHNLKRETISQQYQAVKERTS 117 (309)
Q Consensus 88 S~~wme~~~~~~~~~~tl~~~~~~v~~~t~ 117 (309)
.-+..+-+..+ .+.+.|.+++..|.+++.
T Consensus 185 i~~L~~~l~~~-~~~~~l~~ilt~V~~~V~ 213 (241)
T smart00115 185 IQSLCQVLKEY-ARSLDLLDILTEVNRKVA 213 (241)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHh
Confidence 66666666543 367889999999999986
No 8
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.47 E-value=1.7e+02 Score=26.84 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=39.5
Q ss_pred ccccchhHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021650 167 VNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFG 221 (309)
Q Consensus 167 v~srDa~L~~L~~kl~~a~~~~~~k~~a~~eL~~~l~~R~~id~~v~~I~~~l~g 221 (309)
+..-|+.|.-++-++++...+.. +..+.++-.++|+.++..+.--+.+..--|+
T Consensus 35 IskLDaeL~k~~~Qi~k~R~gpa-q~~~KqrAlrVLkQKK~yE~q~d~L~~QsfN 88 (218)
T KOG1655|consen 35 ISKLDAELCKYKDQIKKTRPGPA-QNALKQRALRVLKQKKMYENQKDSLDQQSFN 88 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44568899999999999988764 7777777788888888877655554443333
No 9
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=23.74 E-value=94 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCCCceEEEEeecc
Q 021650 8 YAMEFIDVLKKKHAAKSYKGMVIYVEACE 36 (309)
Q Consensus 8 ~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~ 36 (309)
.|+++++.|.+...++.|.+||+.-+.=.
T Consensus 74 Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~ 102 (138)
T PF10116_consen 74 FAREVADRLEKARRAGKFDRLVLVAPPRF 102 (138)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECHHH
Confidence 47899999999999999999999876533
No 10
>PF15121 TMEM71: TMEM71 protein family
Probab=21.96 E-value=62 Score=27.75 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceEEEEeeccc---CcccCCCCCCCCcEEEEccCCCCccccccC
Q 021650 6 YVYAMEFIDVLKKKHAAKSYKGMVIYVEACES---GSIFEGVMPKDLDIYVTTASNAQESSFGTY 67 (309)
Q Consensus 6 ~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~S---gSmf~~~lp~~~niya~TAan~~EsS~~~~ 67 (309)
.+|.+.|+..|++..+-++==--+|=++||+| ||+|.++ -+.+.|++|-..
T Consensus 94 V~YKENLVRIFRkkkr~rrsl~sLf~~~as~sWL~~sif~~v-----------ds~~~e~~Wleg 147 (149)
T PF15121_consen 94 VMYKENLVRIFRKKKRIRRSLSSLFSLSASKSWLHGSIFGDV-----------DSSPSEDSWLEG 147 (149)
T ss_pred eeehhhhhHHHHhhhhhhhhhhhhcCcccchhhhcccccCCC-----------CCCccccccccc
Confidence 67899999999998886655555677999997 7777553 336778887543
No 11
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=21.61 E-value=1.3e+02 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCceEEEEeeccc
Q 021650 5 PYVYAMEFIDVLKKKHAAKSYKGMVIYVEACES 37 (309)
Q Consensus 5 ~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~S 37 (309)
+.++|..|.++|++-+++.. +..++-|+||-.
T Consensus 66 ~PVHA~NL~e~l~~I~~~~~-~~~IIAIDAcLG 97 (163)
T PF06866_consen 66 EPVHALNLEETLNEIKKKHP-NPFIIAIDACLG 97 (163)
T ss_pred CCcchhhHHHHHHHHHHHCC-CCeEEEEECCCC
Confidence 57899999999999887433 678999999965
No 12
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=20.19 E-value=3.4e+02 Score=24.75 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHH-HHcCCCCceEEEEeecccCcccCC-----------------------CCCCCCcEEEEccCCCCc
Q 021650 6 YVYAMEFIDVLKKK-HAAKSYKGMVIYVEACESGSIFEG-----------------------VMPKDLDIYVTTASNAQE 61 (309)
Q Consensus 6 ~l~a~dL~~~l~~M-~~~~~Y~~lvfyiEaC~SgSmf~~-----------------------~lp~~~niya~TAan~~E 61 (309)
.+.-++|.+.|.-- -..=+-|-=+|+|+||...-.-.| .+|...+++..-|+-+..
T Consensus 97 ~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lv~ysT~pG~ 176 (243)
T cd00032 97 VVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGY 176 (243)
T ss_pred EEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcCCCceeccCccccccccccccccccccCCCCcccEEEEecCCCCe
Confidence 34445555444311 111123444899999987543222 134445666666666555
Q ss_pred cccccCCCCCCCCCCccccccccchhhhhhhhhcccccccccCHHHHHHHHHHhhc
Q 021650 62 SSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTS 117 (309)
Q Consensus 62 sS~~~~c~~~~~~~~~~~~tcLgD~fS~~wme~~~~~~~~~~tl~~~~~~v~~~t~ 117 (309)
-||-.- ..|+ +|.-.+.+-+..+ ...+.|.+++..|.+++.
T Consensus 177 ~a~r~~----------~~gS----~fi~~l~~~l~~~-~~~~~l~~il~~V~~~V~ 217 (243)
T cd00032 177 VSWRNT----------KKGS----WFIQSLCQVLRKY-AHSLDLLDILTKVNRKVA 217 (243)
T ss_pred EeecCC----------CCCC----EeHHHHHHHHHHh-CCCCcHHHHHHHHHHHHh
Confidence 554211 1233 4555555555422 246789999999999986
Done!