Query 021651
Match_columns 309
No_of_seqs 261 out of 1960
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 100.0 8.9E-48 1.9E-52 355.3 32.7 290 15-307 2-291 (308)
2 PLN02878 homogentisate phytylt 100.0 2.3E-42 5E-47 309.5 27.5 241 64-307 21-265 (280)
3 PRK12895 ubiA prenyltransferas 100.0 1.4E-39 3.1E-44 296.7 27.7 261 25-307 2-265 (286)
4 PRK12870 ubiA 4-hydroxybenzoat 100.0 8.3E-39 1.8E-43 293.7 25.9 269 22-309 5-275 (290)
5 PRK13106 ubiA prenyltransferas 100.0 1.2E-37 2.5E-42 286.4 29.0 265 22-306 11-279 (300)
6 PRK12873 ubiA prenyltransferas 100.0 7.3E-38 1.6E-42 285.8 26.5 270 23-308 4-278 (294)
7 PLN02809 4-hydroxybenzoate non 100.0 3.2E-37 6.9E-42 282.4 28.2 267 23-309 3-273 (289)
8 PRK12888 ubiA prenyltransferas 100.0 3.3E-37 7.2E-42 282.0 27.8 259 26-305 2-264 (284)
9 PRK12847 ubiA 4-hydroxybenzoat 100.0 4.6E-37 1E-41 282.0 28.7 267 22-309 3-272 (285)
10 PRK12882 ubiA prenyltransferas 100.0 5.9E-37 1.3E-41 280.2 27.1 262 26-309 4-266 (276)
11 PRK12886 ubiA prenyltransferas 100.0 1.2E-36 2.6E-41 279.4 28.5 265 22-308 4-270 (291)
12 PRK12874 ubiA prenyltransferas 100.0 1.7E-36 3.6E-41 278.3 29.1 266 20-305 2-271 (291)
13 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.9E-36 4.2E-41 277.1 27.8 246 26-293 3-248 (279)
14 TIGR01475 ubiA_other putative 100.0 1.8E-36 3.9E-41 277.7 27.6 259 26-305 2-263 (282)
15 PRK12878 ubiA 4-hydroxybenzoat 100.0 3.7E-36 7.9E-41 278.6 28.6 286 2-308 5-298 (314)
16 COG0382 UbiA 4-hydroxybenzoate 100.0 5.3E-36 1.2E-40 275.6 29.0 270 20-309 4-275 (289)
17 PRK12876 ubiA prenyltransferas 100.0 5.2E-36 1.1E-40 273.5 28.5 266 25-309 3-283 (300)
18 PLN00012 chlorophyll synthetas 100.0 4.6E-36 1E-40 282.7 28.7 233 5-253 65-309 (375)
19 PRK12848 ubiA 4-hydroxybenzoat 100.0 5E-36 1.1E-40 274.7 27.9 265 23-308 2-268 (282)
20 PRK12392 bacteriochlorophyll c 100.0 7.3E-36 1.6E-40 277.8 29.0 253 22-290 8-271 (331)
21 TIGR01476 chlor_syn_BchG bacte 100.0 1.5E-36 3.3E-41 278.4 23.9 221 27-257 1-222 (283)
22 TIGR01474 ubiA_proteo 4-hydrox 100.0 9E-36 1.9E-40 272.8 27.5 263 26-309 1-267 (281)
23 PRK07566 bacteriochlorophyll/c 100.0 9.2E-36 2E-40 276.5 27.7 235 8-256 10-249 (314)
24 PRK12884 ubiA prenyltransferas 100.0 2.4E-35 5.2E-40 270.0 27.8 263 24-308 2-266 (279)
25 TIGR02056 ChlG chlorophyll syn 100.0 3.9E-35 8.5E-40 271.4 29.5 223 21-257 11-244 (306)
26 PRK04375 protoheme IX farnesyl 100.0 1.6E-35 3.6E-40 272.9 26.9 266 23-309 7-276 (296)
27 PRK12869 ubiA protoheme IX far 100.0 1.7E-34 3.7E-39 264.1 27.6 263 25-309 1-267 (279)
28 TIGR01473 cyoE_ctaB protoheme 100.0 1.7E-34 3.7E-39 264.4 26.6 264 27-309 1-268 (280)
29 PRK13595 ubiA prenyltransferas 100.0 2.5E-34 5.4E-39 260.8 26.3 217 23-257 9-230 (292)
30 PRK13362 protoheme IX farnesyl 100.0 1E-33 2.2E-38 261.3 27.4 270 21-309 8-281 (306)
31 PRK12883 ubiA prenyltransferas 100.0 1.7E-33 3.6E-38 257.5 27.9 209 26-253 3-211 (277)
32 PRK05951 ubiA prenyltransferas 100.0 3.2E-33 7E-38 257.6 29.2 269 24-305 2-278 (296)
33 PRK06080 1,4-dihydroxy-2-napht 100.0 2.5E-32 5.3E-37 251.8 28.8 225 26-262 3-234 (293)
34 PRK13387 1,4-dihydroxy-2-napht 100.0 4.1E-31 9E-36 245.2 28.9 231 26-261 3-254 (317)
35 PRK13105 ubiA prenyltransferas 100.0 6.2E-30 1.3E-34 232.8 27.4 217 27-259 2-223 (282)
36 KOG1381 Para-hydroxybenzoate-p 100.0 7.6E-32 1.7E-36 235.7 11.0 271 15-307 53-329 (353)
37 PRK07419 1,4-dihydroxy-2-napht 100.0 3.3E-29 7.2E-34 230.6 28.2 227 22-261 8-239 (304)
38 PRK12871 ubiA prenyltransferas 100.0 7.4E-29 1.6E-33 228.1 28.2 259 24-304 3-277 (297)
39 PRK12872 ubiA prenyltransferas 100.0 2.2E-29 4.8E-34 231.2 24.6 252 25-293 3-255 (285)
40 TIGR00751 menA 1,4-dihydroxy-2 100.0 6.8E-29 1.5E-33 227.0 27.5 215 34-260 1-228 (284)
41 PLN02776 prenyltransferase 100.0 4.9E-29 1.1E-33 231.0 26.3 255 32-308 1-260 (341)
42 COG0109 CyoE Polyprenyltransfe 100.0 7.1E-30 1.5E-34 229.9 17.8 266 22-307 14-282 (304)
43 PLN02922 prenyltransferase 100.0 5.2E-28 1.1E-32 223.9 29.5 232 23-261 12-253 (315)
44 PRK12875 ubiA prenyltransferas 100.0 2.8E-28 6.1E-33 222.4 26.0 222 22-260 4-229 (282)
45 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.1E-27 2.4E-32 219.0 28.9 220 29-261 2-226 (285)
46 COG1575 MenA 1,4-dihydroxy-2-n 100.0 1.1E-27 2.4E-32 216.2 27.5 226 25-261 7-241 (303)
47 PRK13592 ubiA prenyltransferas 100.0 1.1E-27 2.3E-32 216.6 21.5 217 73-308 55-283 (299)
48 PRK13591 ubiA prenyltransferas 100.0 1.2E-26 2.7E-31 211.4 25.6 213 24-261 25-244 (307)
49 PF01040 UbiA: UbiA prenyltran 100.0 4.8E-27 1E-31 211.6 21.6 158 75-243 34-193 (257)
50 PRK12324 phosphoribose diphosp 99.9 2E-20 4.3E-25 171.5 23.9 150 22-180 7-158 (295)
51 PRK08238 hypothetical protein; 99.9 8.1E-20 1.8E-24 178.1 23.2 195 14-229 179-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.6 8.4E-16 1.8E-20 138.3 1.9 257 24-308 92-356 (409)
53 KOG4581 Predicted membrane pro 99.3 2.9E-12 6.4E-17 110.6 3.4 238 2-258 44-291 (359)
54 PRK12884 ubiA prenyltransferas 93.4 0.67 1.5E-05 42.3 9.8 35 203-238 44-78 (279)
55 PRK13595 ubiA prenyltransferas 92.1 3.7 8E-05 37.9 12.6 26 208-234 59-84 (292)
56 PRK13592 ubiA prenyltransferas 92.1 4.3 9.4E-05 37.5 13.0 44 204-248 54-100 (299)
57 PRK07419 1,4-dihydroxy-2-napht 92.0 1.6 3.5E-05 40.5 10.4 36 81-119 189-225 (304)
58 COG1575 MenA 1,4-dihydroxy-2-n 91.4 2.7 5.9E-05 38.9 10.9 24 78-101 188-211 (303)
59 PRK07566 bacteriochlorophyll/c 91.4 2.7 5.8E-05 39.2 11.2 23 85-107 208-231 (314)
60 PRK12887 ubiA tocopherol phyty 90.8 2 4.4E-05 39.9 9.8 23 215-238 72-94 (308)
61 PF01040 UbiA: UbiA prenyltran 90.2 2.2 4.7E-05 37.8 9.1 35 206-240 33-68 (257)
62 PRK09573 (S)-2,3-di-O-geranylg 90.1 4.3 9.3E-05 37.1 11.2 34 204-238 45-78 (279)
63 PRK12875 ubiA prenyltransferas 90.0 15 0.00032 33.8 14.5 38 85-125 184-222 (282)
64 PRK12872 ubiA prenyltransferas 89.9 8.7 0.00019 35.0 13.1 23 85-107 180-203 (285)
65 PRK12324 phosphoribose diphosp 89.8 2.5 5.5E-05 39.1 9.4 32 207-238 57-89 (295)
66 TIGR02056 ChlG chlorophyll syn 89.6 2.5 5.3E-05 39.3 9.2 32 206-238 64-95 (306)
67 COG0382 UbiA 4-hydroxybenzoate 89.3 3.7 8E-05 37.7 10.1 37 203-239 54-91 (289)
68 PLN02809 4-hydroxybenzoate non 89.2 2.7 5.8E-05 38.8 9.1 35 205-239 54-89 (289)
69 TIGR02235 menA_cyano-plnt 1,4- 89.2 4.1 8.9E-05 37.5 10.2 35 84-121 179-214 (285)
70 PLN00012 chlorophyll synthetas 89.0 6.5 0.00014 37.7 11.8 23 85-107 271-294 (375)
71 PRK13387 1,4-dihydroxy-2-napht 88.9 2.2 4.8E-05 39.8 8.4 41 81-124 204-245 (317)
72 TIGR01476 chlor_syn_BchG bacte 88.6 2.2 4.7E-05 39.1 8.0 39 207-246 49-90 (283)
73 PRK12869 ubiA protoheme IX far 88.6 6 0.00013 36.2 10.9 36 203-238 43-79 (279)
74 PRK12883 ubiA prenyltransferas 88.3 8.9 0.00019 34.9 11.9 31 207-238 48-78 (277)
75 PLN02922 prenyltransferase 87.0 3.3 7.1E-05 38.7 8.2 36 81-119 203-239 (315)
76 PRK12882 ubiA prenyltransferas 87.0 4.9 0.00011 36.6 9.3 33 205-238 47-79 (276)
77 PRK12847 ubiA 4-hydroxybenzoat 86.8 3.7 8E-05 37.6 8.4 33 206-238 55-88 (285)
78 PRK13591 ubiA prenyltransferas 86.7 8.4 0.00018 35.8 10.6 30 204-234 66-95 (307)
79 PRK06080 1,4-dihydroxy-2-napht 86.3 26 0.00057 32.0 14.3 33 85-120 187-220 (293)
80 PRK12873 ubiA prenyltransferas 86.2 3.9 8.4E-05 37.8 8.2 35 204-238 52-87 (294)
81 TIGR01474 ubiA_proteo 4-hydrox 85.4 5.2 0.00011 36.6 8.6 34 206-239 50-84 (281)
82 PRK04375 protoheme IX farnesyl 84.8 12 0.00027 34.4 10.9 35 204-238 52-87 (296)
83 PRK12870 ubiA 4-hydroxybenzoat 84.7 5.6 0.00012 36.6 8.5 34 206-239 56-90 (290)
84 TIGR00751 menA 1,4-dihydroxy-2 84.1 15 0.00032 33.8 10.9 35 84-120 182-216 (284)
85 PRK12392 bacteriochlorophyll c 83.6 7.7 0.00017 36.5 9.0 36 212-248 66-104 (331)
86 PRK12888 ubiA prenyltransferas 83.6 20 0.00043 32.9 11.6 36 203-238 46-82 (284)
87 TIGR01475 ubiA_other putative 82.7 12 0.00027 34.1 9.9 37 202-238 42-79 (282)
88 TIGR01473 cyoE_ctaB protoheme 82.3 9.1 0.0002 34.9 8.9 35 204-238 43-78 (280)
89 PRK12895 ubiA prenyltransferas 82.2 17 0.00037 33.5 10.6 22 85-106 178-200 (286)
90 PRK12874 ubiA prenyltransferas 82.0 17 0.00037 33.5 10.6 28 78-107 181-209 (291)
91 PRK12848 ubiA 4-hydroxybenzoat 81.2 9.5 0.00021 34.9 8.6 33 207-239 53-86 (282)
92 PRK13362 protoheme IX farnesyl 80.5 11 0.00024 35.0 8.8 35 204-238 55-90 (306)
93 PRK08238 hypothetical protein; 80.0 12 0.00027 37.0 9.4 34 205-238 235-269 (479)
94 PRK12878 ubiA 4-hydroxybenzoat 79.6 10 0.00022 35.3 8.3 34 205-238 81-115 (314)
95 PRK12871 ubiA prenyltransferas 79.1 28 0.00061 32.2 11.0 24 85-108 194-218 (297)
96 PRK05951 ubiA prenyltransferas 77.8 45 0.00097 30.7 12.0 25 204-228 48-72 (296)
97 PLN02776 prenyltransferase 77.0 20 0.00044 33.9 9.4 37 202-238 35-72 (341)
98 PRK13106 ubiA prenyltransferas 77.0 38 0.00082 31.4 11.2 35 204-238 57-92 (300)
99 PRK12886 ubiA prenyltransferas 76.6 17 0.00036 33.5 8.7 36 204-239 50-86 (291)
100 PLN02878 homogentisate phytylt 75.2 15 0.00033 33.6 7.9 34 214-248 41-77 (280)
101 PRK12876 ubiA prenyltransferas 75.1 20 0.00043 33.3 8.7 35 204-238 55-90 (300)
102 PRK13105 ubiA prenyltransferas 73.8 55 0.0012 30.1 11.3 20 214-233 52-71 (282)
103 cd00867 Trans_IPPS Trans-Isopr 55.1 10 0.00022 33.2 2.7 35 207-241 157-201 (236)
104 PRK10581 geranyltranstransfera 54.4 13 0.00028 34.5 3.2 42 206-247 213-265 (299)
105 COG0109 CyoE Polyprenyltransfe 39.4 3.2E+02 0.007 25.4 11.1 48 204-251 60-111 (304)
106 TIGR02748 GerC3_HepT heptapren 35.4 21 0.00046 33.3 1.6 34 207-240 201-245 (319)
107 COG0142 IspA Geranylgeranyl py 34.9 17 0.00038 33.9 0.9 37 207-243 205-252 (322)
108 PLN02890 geranyl diphosphate s 32.6 4.8E+02 0.01 25.5 12.0 34 206-239 298-342 (422)
109 CHL00151 preA prenyl transfera 31.1 24 0.00052 33.0 1.1 34 207-240 206-250 (323)
110 TIGR02749 prenyl_cyano solanes 30.7 40 0.00086 31.5 2.6 33 207-239 205-248 (322)
111 PF00348 polyprenyl_synt: Poly 28.5 32 0.0007 30.9 1.5 40 204-243 174-224 (260)
112 cd00685 Trans_IPPS_HT Trans-Is 27.1 42 0.00091 30.1 2.0 34 204-237 177-221 (259)
113 COG4147 DhlC Predicted symport 26.4 1.1E+02 0.0025 30.3 4.8 23 155-178 438-460 (529)
114 COG2814 AraJ Arabinose efflux 25.4 6.3E+02 0.014 24.5 17.2 131 104-244 71-216 (394)
115 PRK10888 octaprenyl diphosphat 24.6 5.8E+02 0.012 23.8 11.9 34 206-239 201-245 (323)
116 PF08285 DPM3: Dolichol-phosph 23.2 3.3E+02 0.0071 20.5 5.9 23 69-91 47-69 (91)
117 PRK10299 PhoPQ regulatory prot 23.1 38 0.00081 22.2 0.6 16 80-95 19-34 (47)
118 TIGR02762 TraL_TIGR type IV co 22.4 2.2E+02 0.0048 21.5 4.9 30 94-127 7-36 (95)
119 PLN02857 octaprenyl-diphosphat 20.5 47 0.001 32.3 1.0 33 207-239 299-342 (416)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=8.9e-48 Score=355.28 Aligned_cols=290 Identities=34% Similarity=0.567 Sum_probs=236.5
Q ss_pred CCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhh
Q 021651 15 SDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGID 94 (309)
Q Consensus 15 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D 94 (309)
|+..+++.+..+++++|++|||+.+++.+++++....+....+...+...+...+...+....++.+++++||++|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677788889999999999999999999987544322222222233222322333334456677778889999999999
Q ss_pred hhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHH
Q 021651 95 KVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGF 174 (309)
Q Consensus 95 ~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~ 174 (309)
++|||+||+++|++|+++++.+..++.++++.++. ..|+..+.+..++.++++.||.||+|+||+|..++++++...|.
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~ 160 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV 160 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence 99999999999999999999999999888887764 47888888888889999999999999999999999999888898
Q ss_pred HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHH
Q 021651 175 LLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYV 254 (309)
Q Consensus 175 ~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~ 254 (309)
.+.+|.+.+..+..+.+..+++..++++++.++++.++++.||++|+|+||+.|+||+|+++|+|++.+++..++.++|+
T Consensus 161 i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~ 240 (308)
T PRK12887 161 IVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL 240 (308)
T ss_pred HHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence 88888876554333333345566677788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhc
Q 021651 255 AAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 307 (309)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
..+..+......+...++..+|++++.++.||.+.+|.+ |+++..+|||+.
T Consensus 241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~i 291 (308)
T PRK12887 241 GMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQ--DKQAIAQFYQFI 291 (308)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc--cchHHHHHHHHH
Confidence 888877665555555556699999999999999999886 788999999973
No 2
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.3e-42 Score=309.49 Aligned_cols=241 Identities=35% Similarity=0.547 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Q 021651 64 LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSL-YCL 142 (309)
Q Consensus 64 ~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~ 142 (309)
.+...+.+.+++++++.|+.++||++|+|+||+|||+||+|||++|+++++.+...+.++|+.++.. .|+..+.. ...
T Consensus 21 ~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~-~g~~~l~~al~~ 99 (280)
T PLN02878 21 FFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWI-VGSWPLFWALFV 99 (280)
T ss_pred HHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HChHHHHHHHHH
Confidence 4444455667889999999999999999999999999999999999999999999999888877653 55543333 345
Q ss_pred HHHHHhhccC--CccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhhhccccchHHHHHHHHHHHHHHHHHHHHccCC
Q 021651 143 GLFLGTIYSV--PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR-AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLP 219 (309)
Q Consensus 143 ~~~~~~~Ys~--pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 219 (309)
+.++++.||. ||+|+||++++...+.....|....+|.|.+.. ..+|.+..++++.++..++++++..+++++||++
T Consensus 100 ~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 179 (280)
T PLN02878 100 SFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIP 179 (280)
T ss_pred HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCc
Confidence 5688999997 999999999988887776666666777776533 3445444455566666667788889999999999
Q ss_pred ChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHH
Q 021651 220 DVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVI 299 (309)
Q Consensus 220 D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 299 (309)
|+||||+.|+||+|+++|+|++.+++..+..++|+..+..+...+..+...+...||.+++..+++|.+++|.+ ++++
T Consensus 180 DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~--sk~~ 257 (280)
T PLN02878 180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLS--SKAA 257 (280)
T ss_pred CchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcc--cHHH
Confidence 99999999999999999999999999999999999888888877767777788999999999999999999875 8889
Q ss_pred HHHHHHhc
Q 021651 300 LATCCTLG 307 (309)
Q Consensus 300 ~~~~~~~~ 307 (309)
..+|||+.
T Consensus 258 i~~fY~fi 265 (280)
T PLN02878 258 ITSFYMFI 265 (280)
T ss_pred HHHHHHHH
Confidence 99999973
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-39 Score=296.72 Aligned_cols=261 Identities=16% Similarity=0.198 Sum_probs=200.4
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCc
Q 021651 25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP 102 (309)
Q Consensus 25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rp 102 (309)
++|.|+|++||++........ ..+++++.++.+++..+....++ ..+..+++|+ +||+.|+|+|++|+ |+||
T Consensus 2 ~~~~~~el~k~~~t~~al~~a---~~g~~lA~~~~~~~~~l~l~~~~-~~~~rsag~~--~Ndi~Dr~iD~~~~RT~~RP 75 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFI---LAGYVIAAGHYIHPIKILLILIA-AVSARTSAMS--INRIEGLRYDMINPRKKDWA 75 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHH---HHHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhcccCCCCcCCCCC
Confidence 368899999999975443333 33444444433444333333332 3466678887 99999999999996 5899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 021651 103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 182 (309)
Q Consensus 103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~ 182 (309)
+|+|++|++||+.+..++.++++.++ +..|+.++.+......+...|+ .+||++.++|+++|...|+ .++++|.
T Consensus 76 LpsG~is~~~A~~~~~~~~~~~~~~~-~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~-~~l~g~~ 149 (286)
T PRK12895 76 LVSGRIKMREAIAFTIIFIAIFEICT-FLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGL-GVLAGYL 149 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHh-HHHHHHH
Confidence 99999999999999999888887644 4578988877776666666776 7999999999999999995 6677787
Q ss_pred HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021651 183 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 262 (309)
Q Consensus 183 a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~ 262 (309)
+.++. .++....+++.+..++|+.++|++|++||+|+|++.|+||+|+++|++++.+++..++.++..+....+..
T Consensus 150 Av~g~----~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~ 225 (286)
T PRK12895 150 AVIPA----FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIY 225 (286)
T ss_pred HHcCC----CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542 23223334456777899999999999999999999999999999999999988888888888877777765
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHH-HHHHHhc
Q 021651 263 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVIL-ATCCTLG 307 (309)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 307 (309)
.. + ..|+++.++.+.++.|||..++++ |+++| ..||+-+
T Consensus 226 ~~-~---~~y~~~~~~~~~~l~~q~~~~~~~--~~~~~~~~~F~~N 265 (286)
T PRK12895 226 IR-T---LWYLAALIIIYTLVIYQHLIIDPR--NPINKRMSFFNAN 265 (286)
T ss_pred Hh-h---HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHc
Confidence 43 3 356788888899999999999876 56677 5677654
No 4
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=8.3e-39 Score=293.67 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-- 99 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~-- 99 (309)
.+.++++|+|++||+++.++.+..++...++.++.++.+++..+...+++ ..+..+++|+ +||++|+|+|++|+|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg-~~~~~~a~~~--~Nd~~D~~iD~~~~Rt~ 81 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILG-ALATSAAGCV--VNDLWDRDIDPQVERTR 81 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhccCCCCCccc
Confidence 35678999999999999888776665444555554444555544333332 3456788888 999999999988763
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651 100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179 (309)
Q Consensus 100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g 179 (309)
+||+|+|++|++|+..+..++.++++.++. ..|+.++.+.+.+.+..+.|| ..||++.++|++.|+..|+ .+++
T Consensus 82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l~ 155 (290)
T PRK12870 82 FRPLASRRLSVKVGIVIAIVALLCAAGLAF-FLNPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIAWGF-AVLI 155 (290)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHHHHh-HHHH
Confidence 899999999999999999999888886654 478888877777777888998 5899999999988888775 4666
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651 180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 259 (309)
Q Consensus 180 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~ 259 (309)
+|.+.++. .++..+++.+..++|+.+++++|++||+|+|+++|+||+|+++|++++.+++. ++.++.......
T Consensus 156 g~~a~~g~------~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~ 228 (290)
T PRK12870 156 SWSAVTGH------LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAIL 228 (290)
T ss_pred HHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHH
Confidence 77665532 23344556678889999999999999999999999999999999998887766 445544444455
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 260 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
+.....+ ..|..+..+....+.||+..++++++||+.+.++|+.+-|
T Consensus 229 ~~~~~~~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~ 275 (290)
T PRK12870 229 GVLLELH---LPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVW 275 (290)
T ss_pred HHHhCCc---HHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhH
Confidence 5544433 2445667777889999999998888899999999987643
No 5
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=286.37 Aligned_cols=265 Identities=18% Similarity=0.170 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--C
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--P 99 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~ 99 (309)
.+.++++|+|++||++.++...+.. .+++++.++.+++..+...+++ ..+..+++|+ +||++|+|+|++|+ |
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~---~g~~la~~~~~~~~~l~l~~lg-~~l~~~a~~~--~Nd~~D~diD~~~~RT~ 84 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAY---LGAFVAIKGIPPISTLILIFLA-LFFLRTAGMT--NDNLADLEIDAKNPRTK 84 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHH---HHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhHHhccccCCCccC
Confidence 5678999999999999887765444 2334444444555544333332 3466778887 99999999999996 5
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651 100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179 (309)
Q Consensus 100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g 179 (309)
+||+|+|++|++|++.+..++.+.++.+ ....|+.+..+...+.++.+.|| .+||++.++|+++|...|+.+. .
T Consensus 85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~-~~~ln~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~~-~ 158 (300)
T PRK13106 85 NRPLVTGAIKISEAKALITAGLILFFAS-AYLVNRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGLAVF-S 158 (300)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHHH-H
Confidence 8999999999999998876655544443 34578887777777777778897 6999999999999999887644 4
Q ss_pred HHHHHHhhhhccc--cchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 180 VYYATRAALGLSF--EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 180 ~~~a~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
++.+.++....+. ..+.+.+++.+..++|+.++|++|++||+|+|+|.|+||+|+++| +++++++..++.++..++.
T Consensus 159 G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~ 237 (300)
T PRK13106 159 GAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDL 237 (300)
T ss_pred HHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 4555443211000 011222334556779999999999999999999999999999999 8899999999999888888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHh
Q 021651 258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTL 306 (309)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (309)
+.+.....+ ..|+.+..+...++.|||..++++ ++|.+-|+.
T Consensus 238 ~~~~~~~lg---~~y~~~~~~~~~~l~~~~~~~~~~----~~~~~~F~~ 279 (300)
T PRK13106 238 LGDLYYGLG---PIAIAATILHGLIMAYAYYLASKK----GDFGRAFYY 279 (300)
T ss_pred HHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHH
Confidence 877765555 356677777888999999998765 455555554
No 6
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-38 Score=285.80 Aligned_cols=270 Identities=20% Similarity=0.173 Sum_probs=207.5
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--C
Q 021651 23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--Y 100 (309)
Q Consensus 23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~--~ 100 (309)
++++++|+|++||+++.++.+..+....+.+.+.++.+++..+...++ ..+++.+++|+ +||+.|+|+|++|+| +
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~-g~~l~~~a~~~--~Nd~~D~~iD~~~~RT~~ 80 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIIL-GGLAVSGAGCI--ANDLWDRRIDRKVERTKN 80 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHH-HHHHHHHHHHH--HHHHHHHhhccCCCcCCC
Confidence 456889999999999998888777655555554433344443332332 24567778887 999999999999974 8
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651 101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN---FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 177 (309)
Q Consensus 101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~---~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~ 177 (309)
||+|+|++|+++++.+..++.++++.+.... .|+.+..+..++.+....|| .+||++.+++++.|+..+ .++
T Consensus 81 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~~a-~~~ 155 (294)
T PRK12873 81 RPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALCWG-FAV 155 (294)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHHHH-hHH
Confidence 9999999999999999999888887665432 36777777777777888998 599999999988877655 467
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
+++|.+.++.. ++....+++.+..++|+.++|+++++||+|+|+++|+||+|+++|++ +.+....++.++.++..
T Consensus 156 l~gw~Av~g~~----~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~ 230 (294)
T PRK12873 156 LIPWAAAEGSL----NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLA 230 (294)
T ss_pred HHHHHHHhCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHH
Confidence 77887776432 33223344456778999999999999999999999999999999975 66666778888888777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651 258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308 (309)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (309)
..+.....++ .|.++.++.+..+.|||..+++++..+++|-+.|+-+-
T Consensus 231 ~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~ 278 (294)
T PRK12873 231 LAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQV 278 (294)
T ss_pred HHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhcc
Confidence 7777666553 45677778888999999999886544788888777543
No 7
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=3.2e-37 Score=282.45 Aligned_cols=267 Identities=20% Similarity=0.144 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHH-HHHHHHhC-CCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--
Q 021651 23 SAFRDACWRFLRPHTIRGTALGSVAL-VARALIEN-PNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK-- 98 (309)
Q Consensus 23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~-~~~a~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~-- 98 (309)
++++++|+|++|.+++.++.+..+.. +...+.+. ++.+++..++...++ ..++.+++|+ +||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g-~~~~~~a~~~--~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCG-ALLLRGAGCT--INDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH-HHHHHHHHHH--HHhhHHhccccCCCCC
Confidence 46789999999999999887777533 33333332 333555544333222 3466677777 99999999999986
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651 99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 178 (309)
Q Consensus 99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~ 178 (309)
|+||+|+|++|++|++.+..++.++++.+.. ..|+.++.+..++.+..+.|| .+||++.+++++.|...++ .++
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l 153 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGLTFNW-GAL 153 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHHHHHH-HHH
Confidence 4899999999999999999888888876654 468888888878888888998 5999999999988776554 456
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651 179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 258 (309)
Q Consensus 179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~ 258 (309)
.+|.+.++.. ++ .....+....++|+.++++++++||+|+|+++|+||+|+++|+++..+++ .++.+++.....
T Consensus 154 ~g~~av~g~~----~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~ 227 (289)
T PLN02809 154 LGWAAVKGSL----DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLAL 227 (289)
T ss_pred HHHHHHhCCC----Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHH
Confidence 6676655321 21 12222555667899999999999999999999999999999999666665 466777777766
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 259 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
.+.....+ ..+..++.+.+..+.||+..++++ |+++|.+.|+.+.|
T Consensus 228 ~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~--~~~~~~~~F~~n~~ 273 (289)
T PLN02809 228 SGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLS--SRADCNRKFVSNKW 273 (289)
T ss_pred HHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCCH
Confidence 66654444 245567888888999999999876 67788888887653
No 8
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-37 Score=282.02 Aligned_cols=259 Identities=16% Similarity=0.177 Sum_probs=194.2
Q ss_pred HHHHHHHhchhhHHHHHHHHH-HHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCc
Q 021651 26 RDACWRFLRPHTIRGTALGSV-ALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP 102 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~-~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rp 102 (309)
+++++|+.||+|.+.+..... +.+.+... .++.+++..+....++ ..+..+++|+ +||++|+|+|++|+ |+||
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~-~~l~~~a~~~--~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFA-SDGSVHWADLLLVTVA-MVGARTFAMA--ANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhCCCCCCCCCCCCC
Confidence 678999999999765433333 22222212 2344555544333332 3456677777 99999999999998 5899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 021651 103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 182 (309)
Q Consensus 103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~ 182 (309)
+|+|++|++|++.+...+..+++.++ ...|+.+..+..++.+..+.|+ .+||++.++|+..|+..++ .++++|.
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~~-~~l~g~~ 151 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAA-ALLNPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQAV-GPVGAWI 151 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHHH-HHHHHHH
Confidence 99999999999998887776665543 3578888777777777778997 6999999999998887655 5667787
Q ss_pred HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021651 183 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 262 (309)
Q Consensus 183 a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~ 262 (309)
++++. .+++.+++.+..++|+.+++++|++||+|+|+++|+||+|+++|+|++.+++..++.+++++..+.+..
T Consensus 152 a~~g~------~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~ 225 (284)
T PRK12888 152 AVTGT------WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA 225 (284)
T ss_pred HHcCC------CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542 234445567788899999999999999999999999999999999999988888888877777766665
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHH-HHHH
Q 021651 263 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILA-TCCT 305 (309)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 305 (309)
...++ .|+++..+.+.++.|||..++++ |+++|. .||+
T Consensus 226 ~~~~~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~ 264 (284)
T PRK12888 226 VGFGA---LWWIGLAITAGAFAYEHAIVSPT--DLSRVNRAFFT 264 (284)
T ss_pred hCCcH---HHHHHHHHHHHHHHHHHHHcCcc--CHHHHHHHHHH
Confidence 45443 45667778889999999998776 555564 5553
No 9
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-37 Score=282.00 Aligned_cols=267 Identities=21% Similarity=0.217 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK-- 98 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~-- 98 (309)
..+++++|+|++||+++.+..+...+...+...+.++. +++...+..+++ ..++.+++|+ +||++|+|+|++|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIG-SVLMRSAGCI--INDIFDRKIDKHVART 79 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHH-HHHHHHHHHH--HHhHHHhhhccCCCcc
Confidence 35678999999999998876655554444444443332 455443333332 3466778888 99999999999876
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651 99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 178 (309)
Q Consensus 99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~ 178 (309)
|+||+|+|++|++|++.+...+.++++.++. ..|+.+..+.+++.+..+.|| ..||++.+++++.|...++ .++
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~l 153 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILL-LLNKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTFNM-GIL 153 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHHHH-HHH
Confidence 4899999999999999999999888886654 468888888888888889998 4999998999888887665 456
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651 179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 258 (309)
Q Consensus 179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~ 258 (309)
++|.+.++. .++..+++.+..++|+.++++++++||+|+|+++|+||+|+++|+|++.++.....+..+..++.
T Consensus 154 ~~~~a~~g~------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~ 227 (285)
T PRK12847 154 MAFAAVQNQ------LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL 227 (285)
T ss_pred HHHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 667665532 23455566778889999999999999999999999999999999999999887775555554433
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 259 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
+.....+ +.+..++.+..+.+.+|+..++++ |++++++.|+.+++
T Consensus 228 -~~~~~~~---~~~y~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~ 272 (285)
T PRK12847 228 -GIISSLH---NIFYLAILAAAGIFYYQYKLLDFD--NPANCMYAFKANHY 272 (285)
T ss_pred -HHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhHH
Confidence 2222222 122334445567888898877654 67788999998764
No 10
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.9e-37 Score=280.18 Aligned_cols=262 Identities=21% Similarity=0.270 Sum_probs=188.9
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 105 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s 105 (309)
+|+|+|++||++...+.++... ++..+.+...+.......++ ...+..+++|+ +||++|+|+|++|+|+||+++
T Consensus 4 ~~~~~~l~Rp~~~~~~~~~~~~---g~~~a~~~~~~~~~~~l~~l-~~~l~~~~~~~--~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 4 VRGYLELTRPVNAVVAGVAAFI---GAFIAGGILSSPSLTGLAFA-AVFLATGAGNA--INDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH---HHHHhccccchHHHHHHHHH-HHHHHHHHHHH--HHHHhhhccccccCCCCCcCC
Confidence 6889999999999777766653 33333333223222222222 23466778888 999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651 106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185 (309)
Q Consensus 106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~ 185 (309)
|++|++|++.++.++.+++++++. ..|+.+..+...+.++.+.||. ++||++.++|++++...|..+.+|.....
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~-~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~- 152 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAF-LLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVG- 152 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhc-
Confidence 999999999999999998887665 4788877777777778889984 89999988999998888876555543221
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021651 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQ 265 (309)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 265 (309)
.. . ....+.+.+..++++.+++++||+||+|+|+++|+||+|+++|+|++.+++...+++....+.........
T Consensus 153 ----~~-~-~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 226 (276)
T PRK12882 153 ----TE-G-LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTF 226 (276)
T ss_pred ----cc-c-hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1 12233455666788899999999999999999999999999999999998877766655555433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCccccchHHHHHHHHhccC
Q 021651 266 AFRRNLMIPAHVILASCLLFQTW-LLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 309 (309)
+ ..|.+...+....+++... ..+. +|++++++.|+++||
T Consensus 227 ~---~~y~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~ 266 (276)
T PRK12882 227 G---LWYLVLVAPADLVMLAAAYRSLKK--TDPTASQKLLKYGMF 266 (276)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 3 2344554455445555433 3333 367899999999986
No 11
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=279.40 Aligned_cols=265 Identities=20% Similarity=0.205 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--C
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--P 99 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~ 99 (309)
+.+++|+|+|++||++......+.. .+++++.++.+++..+...+++ +.+..+++|+ +||++|+|+|++|+ +
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~---~g~~lA~~~~~~~~~l~~~~l~-~~l~~~a~~~--~Nd~~D~~iD~~~~RT~ 77 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAG---IGAVLAALGLPGASQLDWILMA-MVGARTAAMG--FNRLIDAEIDARNPRTA 77 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHH---HHHHHhccCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhccCCCCCCCC
Confidence 4567899999999999865544443 3333443333444433333332 3466677777 99999999999998 5
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651 100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179 (309)
Q Consensus 100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g 179 (309)
+||+|+|++|++|+..+...+.++++ +.....|+.+..+..++.+....|| .+||++.+++++.|+..+ .++++
T Consensus 78 ~RPL~sG~is~~~A~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~-~~~l~ 151 (291)
T PRK12886 78 GRAIPAGLISKGSAILFIVLSSLLML-FAAWFLNPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLA-LAPLG 151 (291)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHH-HHHHH
Confidence 89999999999999888655554443 3334578888777777777788998 589999999988888755 45677
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651 180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 259 (309)
Q Consensus 180 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~ 259 (309)
+|.++++. .+.+.+++.+..++|+.++++++++||+|+|+++|+||+|+++|+++++++...++.+.+..++..
T Consensus 152 g~~a~~g~------~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~ 225 (291)
T PRK12886 152 AWIAIRGT------IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFAL 225 (291)
T ss_pred HHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 88776542 233445566777899999999999999999999999999999999999998877777777776666
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651 260 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (309)
+.....+ ..|.++..+....+++|++..++++. ++.++++|+.+-
T Consensus 226 ~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~F~~~~ 270 (291)
T PRK12886 226 GISAGLG---PWFLAGLAVTGILLLYEHWLLRGGDL-TRLDAAFFNMNG 270 (291)
T ss_pred HHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhH
Confidence 5543333 34566666777788899888865421 347788777653
No 12
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-36 Score=278.28 Aligned_cols=266 Identities=18% Similarity=0.162 Sum_probs=192.7
Q ss_pred HhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH--HhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc
Q 021651 20 NKVSAFRDACWRFLRPHTIRGTALGSVALVARAL--IENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN 97 (309)
Q Consensus 20 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n 97 (309)
+++++++|+|+|++||++.+.+....+.+...+. ...++.+++..+...+++ ..+..+++|+ +||++|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~-~~l~~~a~~~--~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILA-AVSARNFAMA--FNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhhhhccccCC
Confidence 3567889999999999998877665553221111 111233455544333332 2355667777 9999999999999
Q ss_pred C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHH
Q 021651 98 K--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL 175 (309)
Q Consensus 98 ~--~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~ 175 (309)
+ |+||+|+|++|++|++.+...+.++++.++ +..|+.+..+.+........|| .+||++.++|++.|+..|+
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~-~~~n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g~~~~~- 152 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVS-YFINPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLGLSLGL- 152 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----hhcccccccHHHHHHHHHH-
Confidence 8 589999999999999999988887666554 3468887777666666788998 5999999999999888665
Q ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 021651 176 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 255 (309)
Q Consensus 176 ~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~ 255 (309)
+++.+|.+.++. .+ ...+++.+..++|+.+++++|++||+|+|+++|+||+|+++|++++.++...++.+..+.
T Consensus 153 ~~l~G~~av~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~ 226 (291)
T PRK12874 153 APIAGVVAVLGE----IP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLF 226 (291)
T ss_pred HHHHHHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHH
Confidence 456667666532 22 333445667789999999999999999999999999999999999998877776665555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Q 021651 256 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCT 305 (309)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (309)
....+.....+ ..++++..+.+.++.||+...+.+ |++.++.||.
T Consensus 227 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ff~ 271 (291)
T PRK12874 227 WLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKD--FKKIDKAFFT 271 (291)
T ss_pred HHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 55444433322 234566767778888999888543 4445666654
No 13
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.9e-36 Score=277.13 Aligned_cols=246 Identities=25% Similarity=0.369 Sum_probs=184.0
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 105 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s 105 (309)
+|+|+|++||++...+.++...+ +..+.+..+++..+...++ ...+..+++|+ +||++|+|+|++|+|+||+|+
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g---~~la~~~~~~~~~~~l~~l-~~~l~~~~~~~--iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIG---YLIASNFKIDLKGIILAAL-VVFLVCAGGNV--INDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHH---HHHHccCCcchHHHHHHHH-HHHHHHHHHHH--HHhhcccccccccCCCCCcCC
Confidence 67899999999998777766533 2233332334443333333 23466778787 999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651 106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185 (309)
Q Consensus 106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~ 185 (309)
|++|+++++.++..+..+++.++. ..|+.+..+.+++.+..+.||. ++||++.++|+++|...|..+..|. .+.+
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~-~~~~ 151 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSI-FINIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG-LAVF 151 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH-HHHc
Confidence 999999999999999988887665 4788888887788878899984 7999999999999999998755554 3332
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021651 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQ 265 (309)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 265 (309)
+ . ...+++....++|+.+++++||+||+|+|+++|+||+|+++|+|++.+++...+.+....+.+.......
T Consensus 152 ~------~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
T PRK09573 152 N------V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIF 223 (279)
T ss_pred c------c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2233355666789999999999999999999999999999999999999887766666655443322112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 021651 266 AFRRNLMIPAHVILASCLLFQTWLLERA 293 (309)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 293 (309)
+ ..|..+.++....++|++.+.-++
T Consensus 224 ~---~~y~~~~~~~~~~~l~~~~~~~~~ 248 (279)
T PRK09573 224 G---IYYLIVVIICDILFIIAMLILLKN 248 (279)
T ss_pred H---HHHHHHHHHHhHHHHHHHHHHHcC
Confidence 2 346666667777888886655433
No 14
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.8e-36 Score=277.74 Aligned_cols=259 Identities=16% Similarity=0.206 Sum_probs=193.3
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc--CCCCcc
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KPYLPI 103 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl 103 (309)
+|+|+|++||++..+...... ++++.+.++.+++..+...+++ ..++.+++|+ +||++|+|+|++| +|+||+
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~---~g~~la~~~~~~~~~~~l~~l~-~~l~~~a~~~--~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAY---AGALLAAKGLPGLKTLILILIA-AVSARTAAMA--FNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred HHHHHHHHccccHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHHHHHHcccCCCCccCCCCC
Confidence 689999999999876654443 3344443444555444333332 3466778888 9999999999999 468999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651 104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 183 (309)
Q Consensus 104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a 183 (309)
|+|++|+++++.+..++.++++.++ ...|+.+..+...+.++.+.|| .+||++.++|++.|...|. +++++|.+
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~~~g~~a 149 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSAS-YFLNPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGL-APLAGWVA 149 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999887766555444 3467777777767777788998 5899999999998888775 55666766
Q ss_pred HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021651 184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM 263 (309)
Q Consensus 184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~ 263 (309)
.++.. +.....+++.+..++|+.+++++||+||+|+|+++|+||+|+++|+|++.++...++.+++....+.+...
T Consensus 150 ~~g~~----~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (282)
T TIGR01475 150 VIGTI----SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYV 225 (282)
T ss_pred HhCCc----cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65422 21134445667788999999999999999999999999999999999999998888888887777666654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHH-HHH
Q 021651 264 PQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILAT-CCT 305 (309)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 305 (309)
+.+ ..|.++..+.+..+.++++..+++ |++++++ |+.
T Consensus 226 ~~g---~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~ 263 (282)
T TIGR01475 226 GNG---YIALLALILIGLILAYEHYIVDPG--DQSKIQRAFFY 263 (282)
T ss_pred hCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 444 245566666677888898877654 5666765 444
No 15
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3.7e-36 Score=278.65 Aligned_cols=286 Identities=17% Similarity=0.112 Sum_probs=201.3
Q ss_pred cccccccCCCcCCCCchhHh-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCC-----cccHHHHHHHHHHHHHH
Q 021651 2 LQNSASSQIGAAGSDPLLNK-VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN-----LIKWSLLLKAFSGLLAL 75 (309)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~-----~~~~~~~~~~l~~~~~l 75 (309)
|.+.|++...+..+++..-+ .+.++++|+|++|.+++.++.+..+..+.+...+.+. ..++..++..+++ ..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~-~~l 83 (314)
T PRK12878 5 QSSDATGRVADAPSGNWVDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVG-AIA 83 (314)
T ss_pred CCCCCcccccccccccchhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHH-HHH
Confidence 55667888777777764433 6688999999995555444444444333333333321 3443333323332 346
Q ss_pred HHHhccccccccccchhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCC
Q 021651 76 ICGNGYIVGINQIYDIGIDKVNK--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVP 153 (309)
Q Consensus 76 ~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~p 153 (309)
+.+++|+ +||++|+|+|++|+ ++||+++|++|++|++.+..++.++++.+.. ..|+.+..+.+.+.+..+.||
T Consensus 84 ~~~a~~~--~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l~~~~~~~~~~Y~-- 158 (314)
T PRK12878 84 MRGAGCT--YNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAIVAAYP-- 158 (314)
T ss_pred HHHHHHH--HHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH--
Confidence 6788888 99999999999876 4899999999999999999888888877654 468888888888888889997
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccch
Q 021651 154 PFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLA 233 (309)
Q Consensus 154 P~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlp 233 (309)
.+||++.+++...|+..++ +++.+|.+.++. . ++..+++.+..++|+.+.+.++++||+|+|+++|+||+|
T Consensus 159 --~~KR~t~~~~~~~Gl~~~~-~~l~g~~a~~g~----~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slp 229 (314)
T PRK12878 159 --FMKRITWWPQFFLGLAFSW-GALMGWAAHFGS----L--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTA 229 (314)
T ss_pred --HHHhcCCcchHHHHHHHHH-HHHHHHHHHhCC----C--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccc
Confidence 5999988888877776554 344457766542 2 234445566778999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651 234 TKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308 (309)
Q Consensus 234 v~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (309)
+++|+++++++..... +......+.+.....+ ..++++.......+.+|+..++++ |+++++++|+.+.
T Consensus 230 v~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~n~ 298 (314)
T PRK12878 230 RLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGVP---LLALLGLLAAAAHLAWQIARLDID--DPDQCLRLFKSNR 298 (314)
T ss_pred hHhchhhHHHHHHHHH-HHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcccC--ChHHHHHHHHHhH
Confidence 9999999988875443 3333333333332333 234455555566788998887654 5667889988764
No 16
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=5.3e-36 Score=275.56 Aligned_cols=270 Identities=23% Similarity=0.278 Sum_probs=204.0
Q ss_pred HhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC
Q 021651 20 NKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP 99 (309)
Q Consensus 20 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~ 99 (309)
...+++++.+.++.|+++++.+.+.....+.+...+.+..+++.......+ ..++..+++|+ +||+.|+|+|++|+|
T Consensus 4 ~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~ag~~--iND~~D~eiD~~n~r 80 (289)
T COG0382 4 MSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFL-AFFLARSAGYV--INDLADREIDRINPR 80 (289)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHhHH--HHHHhhhhccCCCCC
Confidence 345677888888899988887766666544444444333333222222221 23345566666 999999999999998
Q ss_pred --CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651 100 --YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 177 (309)
Q Consensus 100 --~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~ 177 (309)
+||+|+|++|+++++.+..++.++++.++. ..|+.++.+...+.++.+.|+ ++||++.++|++++...|+.+.
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~~ 155 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALAL-LLNPLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGAL 155 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999988887654 578888888888889999994 8999999999999999888666
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
.|.. +..+ +..++.+++.+..++|+.+++++||++|+|+||+.|+||+|+.+|++++..++...+ +..+...
T Consensus 156 ~g~~-a~~~------~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~ 227 (289)
T COG0382 156 AGAA-AVGG------SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLV 227 (289)
T ss_pred HHHH-HHhC------ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHH
Confidence 5543 3321 123455667788889999999999999999999999999999999999999988877 3333333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
..+...... ...++.+..+.+..+.+|+..++.+ +++.+.++++.+++
T Consensus 228 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 275 (289)
T COG0382 228 LLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVR--DPPACFALFDVNLL 275 (289)
T ss_pred HHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHhhH
Confidence 334332222 1356778888888999999998776 77888898888763
No 17
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.2e-36 Score=273.54 Aligned_cols=266 Identities=17% Similarity=0.164 Sum_probs=193.4
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhC------CC---cccHHHHHHHHHHHHHHHHHhccccccccccchhhhh
Q 021651 25 FRDACWRFLRPHTIRGTALGSVALVARALIEN------PN---LIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDK 95 (309)
Q Consensus 25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~------~~---~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~ 95 (309)
+++.|.|+.|.+|. +...+.++++++.+. ++ .++|..+.+..++ .....+++|+ +||+.|+|+|+
T Consensus 3 ~~~~~~~~i~~~ht---~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~Rsag~~--~Nd~~DrdiD~ 76 (300)
T PRK12876 3 RIKYFQQLINCKYA---LFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSA-FFCARTVGII--VNQIIDCAIDK 76 (300)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhcccC
Confidence 57889999999995 444444444454442 34 4567655433332 3345566677 99999999999
Q ss_pred hcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHH
Q 021651 96 VNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRG 173 (309)
Q Consensus 96 ~n~~--~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G 173 (309)
+|+| +||+|+|++|++|++.+...+.++++. .....|+.+..+..++.++.+.|| ++||+++++|++.|...+
T Consensus 77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~-l~~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~ 151 (300)
T PRK12876 77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLS-LCWLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYY 151 (300)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHH
Confidence 9994 899999999999999999766555444 345689998888888888889998 699999999998888776
Q ss_pred HHHHHHHHHHHHhhhhccccchH--HHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHH
Q 021651 174 FLLNFGVYYATRAALGLSFEWNA--PVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL 251 (309)
Q Consensus 174 ~~~~~g~~~a~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~ 251 (309)
+ .+.++|.+..+. +.++.. ..++..+..++|..++|++|++||+|+||+.|+||+|+++|++++.+++..++.+
T Consensus 152 ~-~~l~~~~Av~~~---~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 152 L-AILMNFFAIIET---PLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred H-HHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 6 566667665431 112100 2233455667888899999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHH-HhcCccccchHHHHHHHHhccC
Q 021651 252 NYVAAILAAIYMPQAFRRNLMIPAHVILASCL-LFQT-WLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
+....+..+.....++ .+|+.+.++.+..+ .+|| ..++ +++++.+.+||+.+.|
T Consensus 228 ~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~F~~N~~ 283 (300)
T PRK12876 228 SAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLID--KKKSTLEQKFFLGNIY 283 (300)
T ss_pred HHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHhcCH
Confidence 8887777776655553 23555555444444 5666 5553 3467788899987654
No 18
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=4.6e-36 Score=282.69 Aligned_cols=233 Identities=21% Similarity=0.287 Sum_probs=170.9
Q ss_pred ccccCCCcCCCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHH------HHHHHHHHHHHHHH
Q 021651 5 SASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL------LLKAFSGLLALICG 78 (309)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~------~~~~l~~~~~l~~~ 78 (309)
+.+.+-|..+++.. +.-.+++|+|++++||++++...++++++.+ . .+ ..+|.. ++..++ ...++.+
T Consensus 65 ~~~~~~~~~~~~~~-~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~---~-~g-~~~~~~~~~~~~ll~~ll-~~~L~~~ 137 (375)
T PLN00012 65 GGSAVNQLLGIKGA-AQETDIWKIRLQLTKPVTWPPLVWGVLCGAA---A-SG-NFHWTLEDVAKSIVCMLM-SGPFLTG 137 (375)
T ss_pred cchhhHHhhCCCCc-ccchHHHHHHHHHhCHHHHHHHHHHHHHHHH---H-cC-CCCchhhhHHHHHHHHHH-HHHHHHH
Confidence 33444455555555 3346788999999999999877776664332 2 22 233331 111222 2345667
Q ss_pred hccccccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhhccC
Q 021651 79 NGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSV 152 (309)
Q Consensus 79 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~------~~~~~~~l~~~~~~~~~~Ys~ 152 (309)
++|+ +|||+|+|+|++|+|+||+++|++|+++++.....+..+++.++.+. .++..+.+.++++++.++||.
T Consensus 138 ~an~--iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~ 215 (375)
T PLN00012 138 YTQT--INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA 215 (375)
T ss_pred HHHH--HHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC
Confidence 7777 99999999999999999999999999999887766666665554332 256666677778888999999
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccc
Q 021651 153 PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTL 232 (309)
Q Consensus 153 pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tl 232 (309)
||+++||++++||+.+|...+..+.++++ +..+ .+++..+++++..+++..+++++||++|+|+|+++|+||+
T Consensus 216 pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a~~g------~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TL 288 (375)
T PLN00012 216 PPLKLKQNGWIGNYALGASYISLPWWAGQ-ALFG------TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSL 288 (375)
T ss_pred CchhhhHhccHhHHHHHHHHHHHHHHHHH-HHcC------CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCccc
Confidence 99999999999999888887766655554 3222 2334555566778899999999999999999999999999
Q ss_pred hhhhchhhHHHHHHHHHHHHH
Q 021651 233 ATKLGVKNIAFLGSGLLLLNY 253 (309)
Q Consensus 233 pv~~G~~~~~~l~~~~~~~~~ 253 (309)
||++|++++++++..++.+..
T Consensus 289 pV~~G~~~a~~l~~~~l~l~~ 309 (375)
T PLN00012 289 PVAFGVETAKWICVGSIDITQ 309 (375)
T ss_pred ceeechHHHHHHHHHHHHHHH
Confidence 999999999998765444443
No 19
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=5e-36 Score=274.67 Aligned_cols=265 Identities=18% Similarity=0.168 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CC
Q 021651 23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PY 100 (309)
Q Consensus 23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~ 100 (309)
++++++|+|++|++++..+.+..+....+..++.++.+++..+...+++ ..+..+++|+ +||++|+|+|++|+ |+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~ 78 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLG-VFLMRAAGCV--INDYADRDFDGHVKRTKN 78 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhHHhccCCCCCCCCC
Confidence 3568999999999998877766554444444443444454433333332 2356678888 99999999999876 48
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 021651 101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV 180 (309)
Q Consensus 101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~ 180 (309)
||+|+|++|++++..++..+..+++.++. ..|+.+..+...+.+..+.|+ ..||++.+++++.++..|+.+ ..+
T Consensus 79 RPl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~g~~~-~~g 152 (282)
T PRK12848 79 RPLASGAVSEKEALALFVVLVLVAFLLVL-TLNTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAFGWGI-PMA 152 (282)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHHHHHH-HHH
Confidence 99999999999999999999888876553 578888777777777888996 589999899998888888754 445
Q ss_pred HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 021651 181 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 260 (309)
Q Consensus 181 ~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~ 260 (309)
|.+.++. .+...+++.+..++|+...+..+++||+|+|+++|+||+|+++|+|++.+... ++.+........+
T Consensus 153 ~~a~~~~------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~~ 225 (282)
T PRK12848 153 FAAVQGS------VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLALLAWAG 225 (282)
T ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHHHHHHHH
Confidence 6665432 23344556677889999999999999999999999999999999998888764 3444343333334
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651 261 IYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308 (309)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (309)
.....+ ..|.++..+....+.||+..++++ |+++|.+.|+-+.
T Consensus 226 ~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~F~~n~ 268 (282)
T PRK12848 226 WLLGLG---WAYYWGLLVAAALFVYQQKLIRDR--EREACFKAFLNNN 268 (282)
T ss_pred HHhcCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCc
Confidence 333333 345566777788999999977664 6677877776554
No 20
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=7.3e-36 Score=277.75 Aligned_cols=253 Identities=22% Similarity=0.266 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCC-cccHHHHH--HHHHH-HHHHHHHhccccccccccchhhhhhc
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN-LIKWSLLL--KAFSG-LLALICGNGYIVGINQIYDIGIDKVN 97 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~-~~~~~~~~--~~l~~-~~~l~~~~~~~~~~Nd~~D~~~D~~n 97 (309)
+.+++|+|+|++||++++ ..++.. +.+. ++.+. .+++..+. ..... ...+..+++++ +||++|+|+|++|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~--~g~~-lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~--iND~~D~~~D~~n 81 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCL--AGGV-MASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS--VNDYFDLELDRVN 81 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHH--HHHH-HHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhH--HhcceeecccccC
Confidence 466789999999999876 333333 2222 22221 12222111 11110 11233455666 9999999999999
Q ss_pred CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHH
Q 021651 98 KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNF-------GPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT 170 (309)
Q Consensus 98 ~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~-------~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~ 170 (309)
+|+||+++|++|+++++.+..++..+++.++.+.. ++..+...+++.+++++||.||+++||+++.++..+++
T Consensus 82 ~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl 161 (331)
T PRK12392 82 EPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGF 161 (331)
T ss_pred CCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHH
Confidence 99999999999999999999998888877665321 12222333466778999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHH
Q 021651 171 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 250 (309)
Q Consensus 171 ~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~ 250 (309)
.+|+.+..+. .+.. + +.++..+++.+..++|+.+++++||++|+|+|++.|+||+|+++|++++.+++...+.
T Consensus 162 ~~~~~~~~~~-~a~~---g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~ 234 (331)
T PRK12392 162 SYGFITFLSA-NALF---S---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIID 234 (331)
T ss_pred HHHHHHHHHH-HHHh---c---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHH
Confidence 8776544333 2222 2 2234445566777899999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021651 251 LNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLL 290 (309)
Q Consensus 251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (309)
++....+..+....+++ .+....++++.++.+|....
T Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 235 LVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence 77776666666555542 23344555666778887755
No 21
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=1.5e-36 Score=278.39 Aligned_cols=221 Identities=22% Similarity=0.251 Sum_probs=165.6
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651 27 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 105 (309)
Q Consensus 27 ~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s 105 (309)
|+|+|++||++++....+...+.+.+ ...++. .++...+...+....++.+++|+ +|||+|+|+|++|+|+||+++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a-~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~--~Nd~~D~~~D~~~~~~Rpi~~ 77 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALAS-GYERGFPEHWWLMLLGMLMAGPLGTGFSQS--INDYFDRDVDAINEPQRPIPS 77 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhc-cCCCCcchhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhCcccCCCCCCCCCC
Confidence 46889999999988777776433211 011222 33443222111123456677777 999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651 106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185 (309)
Q Consensus 106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~ 185 (309)
|++|+++++.+..++..+++.++.+..++....+..++.+.++.||.||+++||+++++|+.++...+..+..+++.+..
T Consensus 78 G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~ 157 (283)
T TIGR01476 78 GIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA 157 (283)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999888888776544344435566677788999999999999999889999888777655555554321
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
+.++..++.++..++++.+++.+||+||+|+||++|+||+|+++|+|++++++..+..+.+...+
T Consensus 158 -------~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 222 (283)
T TIGR01476 158 -------PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVI 222 (283)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence 12344455566777889999999999999999999999999999999999998877666665544
No 22
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=9e-36 Score=272.75 Aligned_cols=263 Identities=20% Similarity=0.196 Sum_probs=192.5
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCC
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYL 101 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~R 101 (309)
+++|.|++|++++.++.+..++...+...+.. +.+++..+...+++ ..+..+++|+ +||++|+|+|++|+ |+|
T Consensus 1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~R 77 (281)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVG-AILMRGAGCV--INDIWDRDFDPQVERTKSR 77 (281)
T ss_pred ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH-HHHHHHHHHH--HHhHhhhcccccCCcccCC
Confidence 36799999999998777666654444444432 33345433322222 3456678888 99999999999876 489
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 021651 102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY 181 (309)
Q Consensus 102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~ 181 (309)
|+|+|++|++|++.+..++.++++.++. ..|+.+..+.+++.+..+.|| .+||++.++++..|+..++. ++.+|
T Consensus 78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~-~~~g~ 151 (281)
T TIGR01474 78 PLASGAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWG-ALMGW 151 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHH-HHHHH
Confidence 9999999999999999999888887654 478888888888888899998 59999999999888776654 44456
Q ss_pred HHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 021651 182 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI 261 (309)
Q Consensus 182 ~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~ 261 (309)
.+.++ . .++..+++....++|+.++++++++||+|+|+++|+||+|+++|+|++++.. .++.+......+.+.
T Consensus 152 ~a~~g----~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~ 224 (281)
T TIGR01474 152 AAVTG----D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILLLALAGL 224 (281)
T ss_pred HHHcC----C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 65543 2 2334444566778999999999999999999999999999999998865543 344444444434443
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 262 YMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
....+ ..|.++..+.+..+.+++..+++ +|+++++++|+.+++
T Consensus 225 ~~~~~---~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~F~~~~~ 267 (281)
T TIGR01474 225 IAGLG---PVYYLGLAAAALLLIRQIATLDI--RDPENCLKLFKANNY 267 (281)
T ss_pred HhCCc---HHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhH
Confidence 32223 34556677778899999998754 367788999998864
No 23
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=9.2e-36 Score=276.54 Aligned_cols=235 Identities=25% Similarity=0.348 Sum_probs=176.3
Q ss_pred cCCCcCCCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHH-----HHHHHHHHHHHHHHhccc
Q 021651 8 SQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL-----LLKAFSGLLALICGNGYI 82 (309)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~ 82 (309)
..-|.-+|+.-- ...+++++|++++||+++..+..+...+.+ .. +. .++.. +....+....+..+++|+
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~---~~-~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 83 (314)
T PRK07566 10 KPRQLLGPKGAS-PTTSIWKARLQLMKPITWFPPMWAFLCGAV---SS-GA-FGWTLENVLKLLAGMLLAGPLLCGTSQT 83 (314)
T ss_pred cccccccccccc-ccchHHHHHHHHhCCcchHHHHHHHHHHHH---Hc-CC-CCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555432 235778999999999998766666553222 22 11 22222 111111123356677787
Q ss_pred cccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchh
Q 021651 83 VGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAV 162 (309)
Q Consensus 83 ~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~ 162 (309)
+|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.++. ..++....+.+++.+..+.||.||+++||+++
T Consensus 84 --~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~ 160 (314)
T PRK07566 84 --LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLFLAWIYSAPPLRLKQNGW 160 (314)
T ss_pred --HhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 999999999999999999999999999999999988888887654 46887777777788889999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHH
Q 021651 163 AAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIA 242 (309)
Q Consensus 163 ~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~ 242 (309)
++|+.++...|..++++++.+.++ . .+++..++.++..+++..+++.+||++|+|+||++|+||+|+++|+++++
T Consensus 161 ~g~i~vg~~~g~~~~~~g~~~~~~---~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~ 235 (314)
T PRK07566 161 LGNYAVGLSYEGLPWWAGAAAFGA---G--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAA 235 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcc---C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHH
Confidence 899999998887766666654431 1 22345555666777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 021651 243 FLGSGLLLLNYVAA 256 (309)
Q Consensus 243 ~l~~~~~~~~~~~~ 256 (309)
+++..+..+.++..
T Consensus 236 ~l~~~l~~~~~~~~ 249 (314)
T PRK07566 236 RIACVVIDLFQLAV 249 (314)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877766666654
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.4e-35 Score=270.02 Aligned_cols=263 Identities=24% Similarity=0.326 Sum_probs=188.4
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcc
Q 021651 24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI 103 (309)
Q Consensus 24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl 103 (309)
+++++|+|++||++.+.+.++... ++..+.++.+++. +...++ ...+..+++|+ +||++|+|+|++|+|+||+
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~---g~~la~~~~~~~~-~~l~~l-~~~l~~~a~~~--~Nd~~D~~~D~~~r~~Rpl 74 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVL---GAIIALGGLPLDE-ALLGFL-TAFFASGSANA--LNDYFDYEVDRINRPDRPI 74 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHH---HHHHHCCCCchHH-HHHHHH-HHHHHHHHHHH--HHhhhhHhhhhccCCCCCC
Confidence 468999999999999877766553 3333433322222 222222 24466777787 9999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651 104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 183 (309)
Q Consensus 104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a 183 (309)
++|++|+++++.++.++.++++.++. ..|+....+.+++.+.++.||. ++||+++++|++++...|..+..|.. +
T Consensus 75 ~~G~is~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~-~ 149 (279)
T PRK12884 75 PSGRISRREALLLAILLFILGLIAAY-LISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGI-A 149 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999998888887665 4688877777778888899984 79999988999998887765444433 2
Q ss_pred HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021651 184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM 263 (309)
Q Consensus 184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~ 263 (309)
.. . .....+.+....++|+.+.++.+|++|+|+|+++|+||+|+++|+|++.++...++.+.+++++......
T Consensus 150 ~~----~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12884 150 VG----E---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG 222 (279)
T ss_pred hC----C---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 1124445566778899999999999999999999999999999999999988887777776555443322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCccc--cchHHHHHHHHhcc
Q 021651 264 PQAFRRNLMIPAHVILASCLLFQTWLLERAN--YTKVILATCCTLGM 308 (309)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 308 (309)
..+ ..|.....+....+++++...-+++ ++..+.++.++.+|
T Consensus 223 ~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (279)
T PRK12884 223 IFN---ILYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTAM 266 (279)
T ss_pred Hhh---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 222 2455556666777888875443222 22233444555544
No 25
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=3.9e-35 Score=271.41 Aligned_cols=223 Identities=24% Similarity=0.327 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHH-----HHHHHHHHHHHHHhccccccccccchhhhh
Q 021651 21 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL-----LKAFSGLLALICGNGYIVGINQIYDIGIDK 95 (309)
Q Consensus 21 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~ 95 (309)
...+++|+|+|++||++++...+++..+. ... ++ .++... ....+....++.+++|+ +|||+|+|.|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~---~~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~--~NDy~D~d~D~ 83 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGA---AAS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQT--INDFYDRDIDA 83 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHH---HHc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhhhhc
Confidence 45677899999999999987777665332 222 22 333221 11111223466677777 99999999999
Q ss_pred hcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHH
Q 021651 96 VNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA 169 (309)
Q Consensus 96 ~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~------~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~ 169 (309)
.|+|+||+++|++|+++++.+...+..+++.++.+. .++..+.+.+++.++++.||.||+++||++++||+.++
T Consensus 84 ~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 84 INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG 163 (306)
T ss_pred cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence 999999999999999999999988888787666432 13566777778888899999999999999988999888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHH
Q 021651 170 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL 249 (309)
Q Consensus 170 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~ 249 (309)
...+..+..+++ +.++ ++++..++.++..++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..+.
T Consensus 164 ~~~~~~~~~~~~-a~~g------~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~ 236 (306)
T TIGR02056 164 ASYIALPWWAGH-ALFG------ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAI 236 (306)
T ss_pred HHHHHHHHHHHH-HHhC------CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence 877776665554 2222 233455566777788999999999999999999999999999999999999988776
Q ss_pred HHHHHHHH
Q 021651 250 LLNYVAAI 257 (309)
Q Consensus 250 ~~~~~~~i 257 (309)
..++...+
T Consensus 237 ~~~~~~~~ 244 (306)
T TIGR02056 237 DIFQGLIA 244 (306)
T ss_pred HHHHHHHH
Confidence 66555443
No 26
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.6e-35 Score=272.92 Aligned_cols=266 Identities=16% Similarity=0.181 Sum_probs=193.9
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CC
Q 021651 23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PY 100 (309)
Q Consensus 23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~ 100 (309)
++++++|+|++||++......+... ++..+.++.+++..+...++ ...+.++++|+ +||++|+|+|++|+ |+
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~---G~~la~~~~~~~~~~~l~~l-~~~l~~aa~~~--iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALG---GMLLAPPGVPPLLLLLLTLL-GIALVAGAAGA--LNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHH---HHHHhcCCCCCHHHHHHHHH-HHHHHHHHHHH--HHhHHhhccCCCCCccCC
Confidence 5678999999999998766666553 33344333445544433333 23466788888 99999999999988 68
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651 101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179 (309)
Q Consensus 101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g 179 (309)
||+|+|++|++|++.++..+.++++.++.+..|+.+..+..++.+ ..+.||. ++||++. +|..++...|..++++
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~~g~~~~l~ 156 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGAAGAMPPLI 156 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHHHHHhHHHH
Confidence 999999999999999999998888877655457766666555544 4678983 6999985 6777777777777777
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651 180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 259 (309)
Q Consensus 180 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~ 259 (309)
+|.++++ +.++..+++.+..++|..+.+..++++|+|+|+++|+||+|+++|++++++++...+.+.....+..
T Consensus 157 g~~a~~g------~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~ 230 (296)
T PRK04375 157 GWAAVTG------SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLP 230 (296)
T ss_pred HHHHhCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877653 2234445567788899999999999999999999999999999999999888777666655544443
Q ss_pred HHhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 260 AIYMPQAFRRNLMIP-AHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
......++ .|.+ +..+.+..+.+++...+++ |++++++.|+.++|
T Consensus 231 ~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~s~~ 276 (296)
T PRK04375 231 VLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKD--DRKWARKLFRYSIN 276 (296)
T ss_pred HHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHH
Confidence 33221222 2333 4444566677788777654 57789999998875
No 27
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=264.05 Aligned_cols=263 Identities=17% Similarity=0.120 Sum_probs=187.7
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCc
Q 021651 25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP 102 (309)
Q Consensus 25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rp 102 (309)
++|+|+|++||++.....++... ++..+.++.+++..+....+ ...+..+++|+ +||++|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~---g~~la~~~~~~~~~~~l~~~-~~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~RP 74 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVA---GYFLAAKHGVSWLPLIPLLI-GGTLASGGSAA--FNHGIERDIDKVMSRTSKRP 74 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHH---HHHHhccCCCCHHHHHHHHH-HHHHHHHHHHH--HhchHhcCCCCCCCCCCCCC
Confidence 36889999999997665555553 33344333345443332222 34466788888 99999999999988 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 021651 103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSL-YCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY 181 (309)
Q Consensus 103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~ 181 (309)
+|+|++|++|+..++..+..+++.++.+..|+....+ .+...+..+.||. ++||++++ |..++...|..+++|+|
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~l~g~ 150 (279)
T PRK12869 75 TPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGNAAALAGY 150 (279)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877665467765433 3334457789983 79999974 66777778888999999
Q ss_pred HHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 021651 182 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI 261 (309)
Q Consensus 182 ~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~ 261 (309)
.++++. .+...+++.+..++|..+.....+++|+|+|+++|+||+|+++|+|++.+....++.+....+...+.
T Consensus 151 ~a~~g~------~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~ 224 (279)
T PRK12869 151 ASGTGS------LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL 224 (279)
T ss_pred HHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887642 23444556677788998887777889999999999999999999999998887776665555544433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHhcCccccchHHHHHHHHhccC
Q 021651 262 YMPQAFRRNLMIPAHVILASCLLFQ-TWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
...+ ..|.+...+....++++ ....+ ++ +++++++.|+.+.|
T Consensus 225 -~~~g---~~y~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~f~~s~~ 267 (279)
T PRK12869 225 -YYIG---LIGLILVAILSAALMATSIRALL-NP-TKEEAWKMFKASSP 267 (279)
T ss_pred -hhcc---HHHHHHHHHHHHHHHHHHHHHhh-CC-ChHHHHHHHHHHHH
Confidence 2223 34555555444545544 44443 32 46678888887643
No 28
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=1.7e-34 Score=264.43 Aligned_cols=264 Identities=17% Similarity=0.137 Sum_probs=192.0
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCcc
Q 021651 27 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPI 103 (309)
Q Consensus 27 ~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl 103 (309)
|+|+|++||++.....+++..+ +..+.+.. +++..+....+ ...++.+++|+ +||++|+|+|++|+ |+||+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g---~~la~~~~~~~~~~~~l~~~-~~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~Rpl 74 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAG---MWLAPGGALVNPPLLLLTLL-GTTLAAASANA--FNMYIDRDIDKKMKRTRNRPL 74 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHH-HHHHHHHHHHH--HHhhcccCcCCCCCCCCCCCC
Confidence 4689999999997776666533 33333322 45544433333 23466778888 99999999999987 68999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 021651 104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY 182 (309)
Q Consensus 104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~ 182 (309)
++|++|++++..++..+.++|+.+.....|+....+..++.++ .+.||. .+||++.+ +..++...|..+++++|.
T Consensus 75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 75 VTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888755545788777776666654 789984 68999876 455666778888889888
Q ss_pred HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021651 183 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 262 (309)
Q Consensus 183 a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~ 262 (309)
+.++. .++..+++.+..++|+...+...+++|+|+|+++|+||+|+++|+|++.+.....++.....+.+.+..
T Consensus 151 a~~g~------~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (280)
T TIGR01473 151 AVTGS------ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFL 224 (280)
T ss_pred HhcCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76542 233444566677889988888888999999999999999999999999888777766655555544443
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651 263 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW 309 (309)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (309)
...++ .++..+..+....+.+++...+++ .|++++++.|+.+||
T Consensus 225 ~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~f~~s~~ 268 (280)
T TIGR01473 225 GGTGW--LYLIVATLLGALFLYLAFKFYRDP-TDRKKARKLFKFSLI 268 (280)
T ss_pred hcccH--HHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHH
Confidence 33332 122345555566777888777644 356789999998875
No 29
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=2.5e-34 Score=260.77 Aligned_cols=217 Identities=20% Similarity=0.092 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCC
Q 021651 23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKW--SLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPY 100 (309)
Q Consensus 23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~ 100 (309)
.+.++.+++.+||.+++.+..+..+++ ..+ ++..+| ..+ ++++.+++..+..+|++||++|+|+|++|+|+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~---~~~-g~~~~~~~~~~---~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGV---WLT-GHLYTLDPGVL---PLLLYLTLPFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHH---HHh-cCcccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence 456677899999999988877776433 222 334555 322 22234455566666779999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651 101 LPIAAGDLSVQSAWFLVIFFAVTGLL---IVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 177 (309)
Q Consensus 101 Rpl~sG~ls~~~a~~~~~~~~~~~~~---l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~ 177 (309)
||+++|++|+++++.+...+...++. ...+..++.+..+.+++.++.+.||.||+|+|++|+++++++ ...|. +
T Consensus 82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~--p 158 (292)
T PRK13595 82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYAL--P 158 (292)
T ss_pred CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHH--H
Confidence 99999999999998876655444321 223456788777777888999999999999999999999887 34454 3
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
.+...+.. |.. ..+.. .+..++|..++|+++++||+|+||+.|+||+|+++|+|++.+++..+.+++.+...
T Consensus 159 ~~~~~~~~---g~~--~~~~~---l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~ 230 (292)
T PRK13595 159 LALPALAL---GAP--VPWPP---LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW 230 (292)
T ss_pred HHHHHHHc---CCc--chHHH---HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 33333322 211 11121 23446888999999999999999999999999999999999999887666555443
No 30
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1e-33 Score=261.31 Aligned_cols=270 Identities=15% Similarity=0.128 Sum_probs=191.4
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--
Q 021651 21 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK-- 98 (309)
Q Consensus 21 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~-- 98 (309)
..+.++|+|++++||+++....+++..+. ..+.++.+++..+...++ ..++.++++|+ +||++|+|+|++|+
T Consensus 8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~---~la~~~~~~~~~~~~~~l-g~~l~~aaa~~--~Nd~~D~~iD~~~~Rt 81 (306)
T PRK13362 8 LWEASLKDYIQVTKPGIIFGNVISVAGGF---FLASKGHVDPVLMLAAVI-GLSLVVASGCA--LNNCIDRDIDAKMQRT 81 (306)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHHccCCCCHHHHHHHHH-HHHHHHHHHHH--HhChHHhCcCCCCCCC
Confidence 34667899999999999987777666433 233333345444333333 34567788888 99999999999876
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651 99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 177 (309)
Q Consensus 99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~ 177 (309)
++||+|+|++|+++++.++..+..+|+.++....|+....+..++.+ ..+.|| .++||++.+++++.++. |..++
T Consensus 82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt---~~lKr~t~~~~~vgg~~-ga~p~ 157 (306)
T PRK13362 82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLS-GAMPP 157 (306)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---HHHhccCcHhHHHHHHH-HHHHH
Confidence 48999999999999999999988888876655567776655555443 467898 37999999888765554 56678
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
+++|.+.++. .+...+++.+..++|+.+.+...+++|+|||+++|+||+|+++|+|++++.......+....+.
T Consensus 158 l~G~~a~~g~------~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~ 231 (306)
T PRK13362 158 VVGYCAVTGQ------FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTA 231 (306)
T ss_pred HHHHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHH
Confidence 8888776542 2344556677888999999999999999999999999999999999998866554444333333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHhccC
Q 021651 258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERAN-YTKVILATCCTLGMW 309 (309)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 309 (309)
+.......+ ..|.....+....+++.+.+..+++ ++++..++.|++|-|
T Consensus 232 l~~~~g~~g---~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~ 281 (306)
T PRK13362 232 LLPLAGYTG---IGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSIL 281 (306)
T ss_pred HHHHHcccc---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 322211112 3455555555666777666654332 455678899988753
No 31
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1.7e-33 Score=257.55 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=155.4
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA 105 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s 105 (309)
+|+|+|++||++.....++... ++..+.++.+++......++ ...+..+++|+ +||++|+|+|++|+|+||+++
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~---G~~la~~~~~~~~~~~l~~~-~~~~~~~a~~~--~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGIL---GSLVALGGIPPIKTLILIFL-VVYLGCSGGNT--INDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH---HHHHHcCCCCcHHHHHHHHH-HHHHHHHHHhH--HHhhhhHhccccCCCCCCCCC
Confidence 6789999999998766655543 33344333333433322222 23455577777 999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651 106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185 (309)
Q Consensus 106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~ 185 (309)
|++|++++..+..++..+|+.++. ..|+..+.+.+.+...++.||. ++||++.++|++++...|..+..|.. +.
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~-~~~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~-a~- 150 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAY-LINIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAI-AV- 150 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHH-Hh-
Confidence 999999999999888888877654 4788877777777788999984 78999888999999999887655443 22
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHH
Q 021651 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNY 253 (309)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~ 253 (309)
+ ..++ ..+. ....+++..++++.||+||+|+|+++|+||+|+++|+|+++++...+..+..
T Consensus 151 ~----~~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~ 211 (277)
T PRK12883 151 G----RIGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTV 211 (277)
T ss_pred c----cccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHH
Confidence 1 1122 2222 2335567778899999999999999999999999999999988766544433
No 32
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.2e-33 Score=257.59 Aligned_cols=269 Identities=20% Similarity=0.166 Sum_probs=188.7
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC-----
Q 021651 24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK----- 98 (309)
Q Consensus 24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~----- 98 (309)
+++|.+++.+||++.+.+..++..+.+.+.. ..+.++|..+...+++ ..++++++|. +|||+|+|.|..|+
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~-~~~~f~~~~~ll~~l~-~~l~~~~~n~--~Ndy~D~~~g~D~~~rt~~ 77 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYY-LFRSFDPLLGALMLLG-YFLLHASLNV--FNDYKDYVLDCDHHETTGY 77 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCccccccCC
Confidence 3578899999999998888887744332222 2234566655444433 3466677777 99999966655554
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHH
Q 021651 99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAF---NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL 175 (309)
Q Consensus 99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~ 175 (309)
|+||+++|++|++++.....++..+++.++.+ ..++..+.+.+++.+.++.||.||+++|+++ +||+.+++.+|..
T Consensus 78 ~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~g-lGe~~v~~~~g~~ 156 (296)
T PRK05951 78 RQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRW-LGEHLVFYAWSHM 156 (296)
T ss_pred CCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCC-chHHHHHHHHHHH
Confidence 67999999999999999988877666654432 3466667777788889999999999999886 5999999999998
Q ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 021651 176 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 255 (309)
Q Consensus 176 ~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~ 255 (309)
.++|.++.+++. .+...+..++...+++......||+||+|+||++|+||+|+++|+|++ ++...+...+|+.
T Consensus 157 ~vlg~~~~~~~~------~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~ 229 (296)
T PRK05951 157 LVMGLIYVWLGN------LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVI 229 (296)
T ss_pred HHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHH
Confidence 899988877642 233445567777788888999999999999999999999999999999 6665666666665
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Q 021651 256 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCT 305 (309)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (309)
.+.........+...+++++.......+.+++...+.++ .+...+-+..
T Consensus 230 ~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (296)
T PRK05951 230 LQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDP-DEATVQLFML 278 (296)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccc-cHHHHHHHHH
Confidence 544333211111112334444444445556666554333 3344444433
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=2.5e-32 Score=251.76 Aligned_cols=225 Identities=23% Similarity=0.224 Sum_probs=174.7
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccch--hhhhh--cCCCC
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDI--GIDKV--NKPYL 101 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~--~~D~~--n~~~R 101 (309)
+|+|++++||++...+.++...+.+.+ ...+.+++..+...+++ ..+..+++|. +|||+|+ +.|+. ++|+|
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a--~~~~~~~~~~~ll~~l~-~~l~~~~~n~--~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALA--YWLGSFHPLLALLALLA-ALLLQIATNL--ANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH-HHHHHHHHHH--HHhHHHhccCCCcccccCCcc
Confidence 578999999999988888777543322 12133455544333332 3355667777 9999999 46754 56789
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651 102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAF---NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 178 (309)
Q Consensus 102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~ 178 (309)
|+++|++|+++++.++..+..++++++.+ ..++....+.+++.++++.||.||+++|+++ +||+.++..+|...+.
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~g-lge~~~~~~~G~~~~~ 156 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTG-LGELFVGVFFGLVIVL 156 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCC-cHHHHHHHHHHHHHHH
Confidence 99999999999998888887766655432 2366666777778888999999999999986 5999999999998888
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651 179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 258 (309)
Q Consensus 179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~ 258 (309)
+.++.+++ ..+++.++.+++.++++..+++.||++|+|+|+++|+||+|+++|+|+++++...++.++++..+.
T Consensus 157 ~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~ 230 (293)
T PRK06080 157 GTYYLQAG------TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVL 230 (293)
T ss_pred HHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHH
Confidence 87776543 233456667888889999999999999999999999999999999999999999999888887776
Q ss_pred HHHh
Q 021651 259 AAIY 262 (309)
Q Consensus 259 ~~~~ 262 (309)
....
T Consensus 231 ~~~~ 234 (293)
T PRK06080 231 LALL 234 (293)
T ss_pred HHHH
Confidence 5543
No 34
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=4.1e-31 Score=245.21 Aligned_cols=231 Identities=15% Similarity=0.185 Sum_probs=176.1
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC----CCC
Q 021651 26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK----PYL 101 (309)
Q Consensus 26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~----~~R 101 (309)
+|.|++.+||++.+.+.+++..+.+.+.. ..+..++..++..+++ ..++++++|+ +|||+|.+.|..++ ++|
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~-~~~~~~~~~~ll~ll~-~~~~~~~~N~--~NDy~D~~~g~D~~~~~~~~~ 78 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLY-VAKIFDWLLFLAFMVA-MLAFDIATTA--INNYMDFKKALDTADYVGIGN 78 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hCCCccHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCCcccccCCcc
Confidence 57899999999998888888744332222 2334566554433332 2346778787 99999988766554 578
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651 102 PIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 178 (309)
Q Consensus 102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~ 178 (309)
++++|.+|+|+++..+..+..++.+++. +..++....+++++.+.++.||.||+++||++ +||+.++..+|+.+..
T Consensus 79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~g-LGe~~v~i~~G~~~v~ 157 (317)
T PRK13387 79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMP-LGEIFSGLTMGFGIFL 157 (317)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCc-cHHHHHHHHHHHHHHH
Confidence 9999999999999998888877776443 34577777788889999999999999999998 6999999999998888
Q ss_pred HHHHHHHhhhhcc--------ccc--h----HHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHH
Q 021651 179 GVYYATRAALGLS--------FEW--N----APVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244 (309)
Q Consensus 179 g~~~a~~~~~g~~--------~~~--~----~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l 244 (309)
|+++.+++..+.. +++ + .+.++.++...+.+...+..||++|+|+||++|+||+|+++|+|+++++
T Consensus 158 g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l 237 (317)
T PRK13387 158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL 237 (317)
T ss_pred HHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence 8888765422100 000 0 0112366777788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021651 245 GSGLLLLNYVAAILAAI 261 (309)
Q Consensus 245 ~~~~~~~~~~~~i~~~~ 261 (309)
..++..++|+..+....
T Consensus 238 ~~~l~~~a~l~~~~~v~ 254 (317)
T PRK13387 238 FAILFYASYLAIAVIVL 254 (317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888887765443
No 35
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=6.2e-30 Score=232.80 Aligned_cols=217 Identities=20% Similarity=0.188 Sum_probs=155.8
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccc-cccccccchhhhhhcCCCCcccc
Q 021651 27 DACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYI-VGINQIYDIGIDKVNKPYLPIAA 105 (309)
Q Consensus 27 ~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~Nd~~D~~~D~~n~~~Rpl~s 105 (309)
|.+++++||++++.+.+++.. +++++ ++.++|.. +.+.+++....... |++|||+|+|.|+.|++++.. .
T Consensus 2 ~~~~~~~rP~~wi~~a~pf~~---g~~la-~~~~~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 2 RQLLLSSRPISWINTAYPFAA---AYLLA-GGEIDWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred hhHHHhcccHHHhccHHHHHH---HHHHH-CCCCChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 678999999999988888874 33344 34445532 22233333333333 468999999999999875432 5
Q ss_pred cccCHHHHHHHHHHHHHHHHH---H-HHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 021651 106 GDLSVQSAWFLVIFFAVTGLL---I-VAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY 181 (309)
Q Consensus 106 G~ls~~~a~~~~~~~~~~~~~---l-~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~ 181 (309)
|.+|++|.....+.+..++.. + .....++.++.+..++++.++.||.||+|+|++++.++++.+..+.....+|.+
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~ 152 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLV 152 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 889999874444333322222 1 122337777788888899999999999999999998886554444333556655
Q ss_pred HHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651 182 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA 259 (309)
Q Consensus 182 ~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~ 259 (309)
+. + .. .++..++.+..+++|..+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+..
T Consensus 153 ~~-~----~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~ 223 (282)
T PRK13105 153 LA-G----AP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLAL 223 (282)
T ss_pred Hh-h----cc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2 11 234455567778889999999999999999999999999999999999999999999888777643
No 36
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=7.6e-32 Score=235.72 Aligned_cols=271 Identities=20% Similarity=0.165 Sum_probs=205.1
Q ss_pred CCchhHhHHHHHHHHHHHhchhhHHHHHHHHH-HHHHHHHHhCCCc-ccHHHHHHHHHHHHH-HHHHhccccccccccch
Q 021651 15 SDPLLNKVSAFRDACWRFLRPHTIRGTALGSV-ALVARALIENPNL-IKWSLLLKAFSGLLA-LICGNGYIVGINQIYDI 91 (309)
Q Consensus 15 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~-~~~~~a~~~~~~~-~~~~~~~~~l~~~~~-l~~~~~~~~~~Nd~~D~ 91 (309)
.+++.+..+.++++|.|++|.++++||++..+ +.|..++.+..+. ++.. ...++++++ ++.+++|+ +||..|+
T Consensus 53 sss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~--mL~LFG~GAllMRgAGCt--INDlwDk 128 (353)
T KOG1381|consen 53 SSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIK--MLALFGVGALLMRGAGCT--INDLWDK 128 (353)
T ss_pred chhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhH--HHHHhcccHHHhccCCce--ehhhhhh
Confidence 34555556778999999999999999987665 5555444443333 3333 335677666 45589999 9999999
Q ss_pred hhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHH
Q 021651 92 GIDKVNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA 169 (309)
Q Consensus 92 ~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~ 169 (309)
|+|+..+| .||+++|++|+++++.+..+...+++.+. .++|+..+.++..++...+.|+ -+||.+++++++.|
T Consensus 129 dlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 129 DLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALGASSLALVITYP----LMKRFTYWPQLVLG 203 (353)
T ss_pred hhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHH-HhccHHHHHhcccccccEEEee----hhhhcchhHHHHHh
Confidence 99998875 79999999999999999888888887654 3689999888877778888998 69999999998876
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchHHH-HHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHH
Q 021651 170 TVRGFLLNFGVYYATRAALGLSFEWNAPV-AFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 170 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
..+++-..+ +|.+..+.. .+.. +-+.+-..+|++.+|++|++||+++|.+.|+|+.+.++|+++-.++ ..+
T Consensus 204 ltfnwGAll-Gw~A~~g~~------~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl-~gf 275 (353)
T KOG1381|consen 204 LTFNWGALL-GWCALKGSL------SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL-SGF 275 (353)
T ss_pred hhcchhhhh-cchhhcCcc------ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH-hhh
Confidence 655443222 244433221 1211 1133445589999999999999999999999999999999966665 456
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhc
Q 021651 249 LLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 307 (309)
Q Consensus 249 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
.......+..+|+...+++ + +..+..+++..+..|...+|.| |+.+|-++|+-.
T Consensus 276 ~a~~ia~La~aG~~s~q~~--p-yy~~lg~~~~~L~~~i~~vdiD--np~dC~k~f~sN 329 (353)
T KOG1381|consen 276 GAAQIASLAAAGIASDQTW--P-YYAALGAVAARLGSQIYKVDID--NPSDCWKKFKSN 329 (353)
T ss_pred hHHHHHHHHHhhhccCCCc--h-HHHHHHHHHHHHHhheeeeecC--ChHHHHHHHHhc
Confidence 6677777778888777775 3 4455888899999999999887 888998888754
No 37
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=3.3e-29 Score=230.63 Aligned_cols=227 Identities=20% Similarity=0.215 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhcCC
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKP 99 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n~~ 99 (309)
..++++.|++.+||++...++.++..+.+.+.. ..+.++|..++..+++ ..++++..|. +|||+|++ .|+. ++
T Consensus 8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~-~~~~f~~~~~ll~ll~-~~l~q~~~N~--~NDy~D~~~G~D~~-~~ 82 (304)
T PRK07419 8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALG-ETGVFRLDQFITFLLA-AILILAWENL--SNDVFDADTGIDKN-KF 82 (304)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHH-HHHHHHHHHH--HHHHHHHhccCCcc-cc
Confidence 356788899999999999888888744332222 2345666665444332 3356677777 99999987 6774 22
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHH
Q 021651 100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL 176 (309)
Q Consensus 100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~ 176 (309)
+ ...++..++++....+..+..++.+++. +..+|..+.++.++.+.++.||.||+++|++++ ||+.++..+|...
T Consensus 83 ~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~l~~G~l~ 160 (304)
T PRK07419 83 H-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCFLAFGPLA 160 (304)
T ss_pred c-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHHHHHHHHH
Confidence 2 2334555788888888877766665543 245777777888899999999999999999984 9999999999999
Q ss_pred HHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHH
Q 021651 177 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA 256 (309)
Q Consensus 177 ~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~ 256 (309)
..|.++.+++ .+++..+..++...+.+..+...||++|+|+||++|+||+|+++|+|+++++..++...+|+..
T Consensus 161 v~g~~yv~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~ 234 (304)
T PRK07419 161 VAAALYSQTP------SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALE 234 (304)
T ss_pred HHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHH
Confidence 9999888764 2344556677778888899999999999999999999999999999999999999888888877
Q ss_pred HHHHH
Q 021651 257 ILAAI 261 (309)
Q Consensus 257 i~~~~ 261 (309)
+....
T Consensus 235 i~~v~ 239 (304)
T PRK07419 235 LLPVL 239 (304)
T ss_pred HHHHH
Confidence 65444
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=7.4e-29 Score=228.07 Aligned_cols=259 Identities=18% Similarity=0.167 Sum_probs=161.7
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc------
Q 021651 24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN------ 97 (309)
Q Consensus 24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n------ 97 (309)
+++++|++++||++......++..+.+.+.. .++.+++..+....+ .++++.+++|+ +||++|+|.|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~-~~g~~~~~~~~l~~l-~~~l~~~ag~~--iND~~D~~~D~~~v~rtm~ 78 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFA-NYGGFSWELTIKAAL-IGLFGFEAGFV--LNDYVDRKRDRLDVENTLT 78 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHH-HHHHHHHHHHH--HhhHHHHhcCcchHhhhhh
Confidence 4578999999999875444443322211111 223445544322222 23344566677 9999999999865
Q ss_pred ---C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHhhccCCccccccchh--hHHHH
Q 021651 98 ---K--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG---PFITSLYCLGLFLGTIYSVPPFRMKRFAV--AAFLI 167 (309)
Q Consensus 98 ---~--~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~--~~~l~ 167 (309)
| ++||+++|++|+++++.+..++.++++.++....+ +..+.+...+.++++.|+. .||.+. ...+.
T Consensus 79 r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~----~kr~~~~p~~~l~ 154 (297)
T PRK12871 79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV----KKRNQKYPVAQLL 154 (297)
T ss_pred ccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccccccHHHHH
Confidence 3 47999999999999999999988888776543222 2334444556677788972 333211 12222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHH
Q 021651 168 IATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSG 247 (309)
Q Consensus 168 ~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~ 247 (309)
-+...++ ++++++. .++ +.+...+++.+..++|+.+++++||++|+|+|+++|+||+|+++|++++++....
T Consensus 155 G~~~~~~-~~~~g~~-~~g------~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~ 226 (297)
T PRK12871 155 GRTDFTL-FPAAGYL-CYG------QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG 226 (297)
T ss_pred HHHHHHH-HHHHHHH-HhC------CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence 2223333 4555543 222 2234455566778899999999999999999999999999999999999876665
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHH
Q 021651 248 LLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCC 304 (309)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (309)
+..+.+...+ +.....++ ..+....++.+.++.+|.+..+.+ |++.|-+-|
T Consensus 227 ~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f 277 (297)
T PRK12871 227 FTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEK--SQDAGMKIL 277 (297)
T ss_pred HHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHH
Confidence 5554443332 22223331 122333355666788888877554 555664433
No 39
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2.2e-29 Score=231.19 Aligned_cols=252 Identities=23% Similarity=0.224 Sum_probs=168.1
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCccc
Q 021651 25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 104 (309)
Q Consensus 25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~ 104 (309)
-+++++++.|+.+.........-....... .+... ....++ ...++.+++|+ +||++|+|+|++|+|+||.+
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~-~~~~~----~~~~~~-~~~~~~~~~~~--~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYMASLL-LGLPI----SWLLLL-ITFLIAAAVYI--INYLTDLEEDIINKPERVVF 74 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHH-HcChh----HHHHHH-HHHHHHHHHHH--hhhhcCCchhhcCCCchHHH
Confidence 468899999999975443333211110001 11111 111222 23456677777 99999999999999999988
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651 105 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPF-RMKRFAVAAFLIIATVRGFLLNFGVYYA 183 (309)
Q Consensus 105 sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~-~lKr~~~~~~l~~~~~~G~~~~~g~~~a 183 (309)
+++...+.+..+..+...+++.+.....++..+.+..++.++++.||.||+ ++||.|..||++++..+|..+..+.+..
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~ 154 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence 554444444333333333343333333478777777788888999999876 5899999999999999998877766654
Q ss_pred HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021651 184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM 263 (309)
Q Consensus 184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~ 263 (309)
.+. .++...+..++..+++....++++|++|+|+|+++|+||+|+++|+|+++++...++.+.+..++......
T Consensus 155 ~~~------~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~ 228 (285)
T PRK12872 155 YQL------TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG 228 (285)
T ss_pred ccc------ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 12344455566777888899999999999999999999999999999999999988888887776554432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 021651 264 PQAFRRNLMIPAHVILASCLLFQTWLLERA 293 (309)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 293 (309)
... ..++...+.....+.+++...+++
T Consensus 229 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
T PRK12872 229 LLP---LLLLVLLLLLAYVLYYIIKLFAAD 255 (285)
T ss_pred Hhh---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 211 122333333444555565555433
No 40
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=6.8e-29 Score=226.98 Aligned_cols=215 Identities=20% Similarity=0.133 Sum_probs=165.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhc--CCCCcccccccC
Q 021651 34 RPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVN--KPYLPIAAGDLS 109 (309)
Q Consensus 34 Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n--~~~Rpl~sG~ls 109 (309)
||++.+.++.++..+.+.+. .. +.++|..++..+++ ..++++..|. +|||+|.+ .|+.+ +|+|++++|.+|
T Consensus 1 Rp~tl~~s~~pv~lG~ala~-~~-~~f~~~~~ll~~~~-~~~~q~~~N~--~NDy~D~~~G~D~~~~~~~~r~i~~g~is 75 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAA-WL-HAFVWLVALLALAT-AVLLQILSNY--ANDYGDGIKGSDTDDRIGPLRGVQKGLIT 75 (284)
T ss_pred CCchHHHHHHHHHHHHHHHH-Hc-CCccHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCChhhccCCcchhcCCCCC
Confidence 89999888888874433222 22 35676665444433 2356677777 99999985 35433 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hHHH------HHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 021651 110 VQSAWFLVIFFAVTGLLIVAF---NFGP------FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV 180 (309)
Q Consensus 110 ~~~a~~~~~~~~~~~~~l~~~---~~~~------~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~ 180 (309)
++++...+..++.++++++.+ ..++ ....+++++.+.++.||.||+++|+++ +||+.+++.+|...+.|.
T Consensus 76 ~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~g-LGE~~v~i~~G~l~v~g~ 154 (284)
T TIGR00751 76 PREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAG-LGDISVLVFFGPLAVLGT 154 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCc-hHHHHHHHHHHHHHHHHH
Confidence 999998888877766655432 2344 345666778888999999999999998 499999999999999999
Q ss_pred HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 021651 181 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 260 (309)
Q Consensus 181 ~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~ 260 (309)
++.+++ .+++..++.++...+.+..+...||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+...
T Consensus 155 ~yvq~~------~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~ 228 (284)
T TIGR00751 155 QYLQAH------RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFM 228 (284)
T ss_pred HHHhcC------CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 887764 23345455667777888899999999999999999999999999999999999988888887665543
No 41
>PLN02776 prenyltransferase
Probab=99.97 E-value=4.9e-29 Score=230.97 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=182.2
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCcccccccC
Q 021651 32 FLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPIAAGDLS 109 (309)
Q Consensus 32 l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls 109 (309)
++||+......++.. ++++++.++.+++..+...+++ ..+..+++|+ +||++|+|+|++|+ ++||+|+|++|
T Consensus 1 L~Kpri~~lv~~ta~---~G~~lA~~~~~~~~~l~~~~lg-~~l~~aaa~~--~N~i~DrdiD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 1 LSKARLSALVVATSG---AGFVLGSGEAIDLPGLGWTCAG-TMLCAASANT--LNQVFEVKNDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CCcchhHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence 467888655555544 3444554444455544433333 4566778787 99999999999987 48999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021651 110 VQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAAL 188 (309)
Q Consensus 110 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~ 188 (309)
+++++.++.++.++|+.+..+..|+.+..+.+.+.++ ...|| .+||++.+ |.++|...|..+++++|.+.++.+
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avtg~~ 149 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWAAASGQL 149 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999988888665556788888777665554 56898 59999976 568999999889999999887532
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhh--chhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 021651 189 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKL--GVKNIAFLGSGLLLLNYVAAILAAIYMPQA 266 (309)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~--G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 266 (309)
++..+++.+..++|+........++|+|+|+++|++++|+.- |+++++.+....+.+..+..+...+... +
T Consensus 150 ------~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~-~ 222 (341)
T PLN02776 150 ------DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT-S 222 (341)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Confidence 344556777888999988888888999999999999999976 4666666665555444333333222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651 267 FRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308 (309)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (309)
+.+++.+.++.+..+.++++..+++ |++..++.|++|.
T Consensus 223 --~~~~~~a~~l~~~~l~~~~~~~~~~--~~~~ar~~F~~Sl 260 (341)
T PLN02776 223 --SPFALEAALLTAYLAASAASFYREP--TNANARKMFHGSL 260 (341)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 1244566666677777888877543 5667788888764
No 42
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-30 Score=229.85 Aligned_cols=266 Identities=18% Similarity=0.176 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP-- 99 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~-- 99 (309)
.+.++|+|++++||+......++..+ +++++.++..++..+...++| +++..+++++ +|+++|+|+|++++|
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~---g~~lA~~~~~~~~l~~~~~~g-~~L~a~~a~a--~N~~~DrDID~~M~RT~ 87 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFA---GMLLAPRGSINPLLLLLTLLG-GALGAGGAGA--FNMYIDRDIDALMERTR 87 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHH---HHHHcccccccHHHHHHHHHH-HHHHHHHHHH--HhhhhhhhHHHhhhhcc
Confidence 46789999999999998666666553 444554344455554444443 4567778787 999999999999985
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651 100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF 178 (309)
Q Consensus 100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~ 178 (309)
+||+++|+++++|++.++.++.++|+.+..+..|+....+.+.+++ ..+.||. .+||++. .|+++|.+.|..+++
T Consensus 88 ~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~-~NiviGg~aGa~Ppl 163 (304)
T COG0109 88 KRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTP-QNIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcc-cceeeeecccccccc
Confidence 8999999999999999999999999988766789988877776655 5678995 8999986 688999999999999
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651 179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 258 (309)
Q Consensus 179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~ 258 (309)
.+|.+.++.. + +..+++.+.+++|+-..--.-+++-+||-+++|+..+|+.-|++.+++......++.....++
T Consensus 164 iGwaAvtg~~----~--~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~ 237 (304)
T COG0109 164 IGWAAVTGSI----S--LGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLL 237 (304)
T ss_pred ceeeeeeCCC----C--chHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887633 2 233334444555544333333344455669999999999999999988766554444444333
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhc
Q 021651 259 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG 307 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
... .|.....|.+...+++..+++..++...+ +|++..++.|++|
T Consensus 238 ~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~-~~~~~A~klF~~S 282 (304)
T COG0109 238 LAL---LGYVGYLYLVVATLLGAWFLALAWKLYRK-DDRKWARKLFKYS 282 (304)
T ss_pred HHH---hccchhHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 322 22333456666667777777777777555 5888889999887
No 43
>PLN02922 prenyltransferase
Probab=99.97 E-value=5.2e-28 Score=223.88 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=173.1
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhcCCC
Q 021651 23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPY 100 (309)
Q Consensus 23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n~~~ 100 (309)
.+++|.|++.+||++...++.++..+.+.+.. ..+..+|..++..+++ ..++.++.|. +|||+|.+ .|+.++..
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~-~~g~f~~~~~ll~ll~-~~l~q~~~N~--~NDy~D~~~G~D~~~~~~ 87 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYL-QTGLFDARRYGTLLLS-SVLVITWLNL--SNDAYDADTGVDKNKKES 87 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHH-HHHHHHHHHH--HhhhhHhccCcCcccCCC
Confidence 45678899999999999888888744332222 2245677765444433 2356677777 99999976 57644322
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHH
Q 021651 101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN----FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL 176 (309)
Q Consensus 101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~----~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~ 176 (309)
+.-..| |+++.......+..+++...... .+|..+.++.++.+.++.||.||+++||+++ ||+.++..+|..+
T Consensus 88 ~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i~fG~l~ 164 (315)
T PLN02922 88 VVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFAAFGPLA 164 (315)
T ss_pred CCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHHHHHHHH
Confidence 222344 89999888877776665322221 3577777888899999999999999999985 9999999999988
Q ss_pred HHHHHHHHHhhhhc-cc---cchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHH
Q 021651 177 NFGVYYATRAALGL-SF---EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 252 (309)
Q Consensus 177 ~~g~~~a~~~~~g~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~ 252 (309)
..|.|..+++..+. .+ ++++..++.++...+.+.++..+||++|+|+||++|+||+|+++|+|+++++..++...+
T Consensus 165 v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~ 244 (315)
T PLN02922 165 TTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLL 244 (315)
T ss_pred HHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHH
Confidence 88888877542210 11 234556678888899999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH
Q 021651 253 YVAAILAAI 261 (309)
Q Consensus 253 ~~~~i~~~~ 261 (309)
|+..+....
T Consensus 245 y~~~i~~v~ 253 (315)
T PLN02922 245 YSLLAALGL 253 (315)
T ss_pred HHHHHHHHH
Confidence 887765543
No 44
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2.8e-28 Score=222.39 Aligned_cols=222 Identities=23% Similarity=0.181 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCC
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYL 101 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~R 101 (309)
.++++|.+++++||+++..+..+.+.+.+.+....++..++.. ..+++ .+++.++.++|++||++|+|+||.|+|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~--~~ll~-~~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA--VALFA-YFLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH--HHHHH-HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 3577889999999999988887777443322111112233322 12222 22344555566699999999999998765
Q ss_pred c---cc-ccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651 102 P---IA-AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN 177 (309)
Q Consensus 102 p---l~-sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~ 177 (309)
. ++ +++.+... .......+++.+.. ..++....+.+...+..+.||.||+|+|+++..+..+.+.. ..+.
T Consensus 81 ~~r~~~~s~~~~~~~---~~~l~~~l~l~l~~-~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~--~~~~ 154 (282)
T PRK12875 81 REREVRYRGDRRVLV---AVALSGALALAFLL-VLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY--ILPG 154 (282)
T ss_pred CCCCccHHHHHHHHH---HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHH--HHHH
Confidence 3 33 22221111 11112222322222 23343333334557788999999999999998654433332 2455
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651 178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI 257 (309)
Q Consensus 178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i 257 (309)
.++|.++++. .++..+ .+..++|+.+++++||+||+|+|+++|+||+|+++|+|++++++..++.++....+
T Consensus 155 ~~~y~~~tg~------~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 155 VAAYALVSGS------LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred HHHHHHHcCC------CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence 6777666532 233333 23346899999999999999999999999999999999999998888888777666
Q ss_pred HHH
Q 021651 258 LAA 260 (309)
Q Consensus 258 ~~~ 260 (309)
..+
T Consensus 227 ~~~ 229 (282)
T PRK12875 227 AVD 229 (282)
T ss_pred HHH
Confidence 544
No 45
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.97 E-value=1.1e-27 Score=219.03 Aligned_cols=220 Identities=21% Similarity=0.222 Sum_probs=165.7
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhcCCCCccccc
Q 021651 29 CWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPYLPIAAG 106 (309)
Q Consensus 29 ~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~sG 106 (309)
|++.+||++...++.++..+.+.+.. ..+.+++..+...+++ ..+++++.|. +|||+|.+ .|+.+. .+ ...+
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~-~~~~f~~~~~ll~li~-~l~~q~~~N~--~Ndy~D~~~G~D~~~~-~~-~~~~ 75 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWG-QGGVFHLDRFALFLIA-AILILAWINL--TNDVFDSDTGIDRFKL-HS-IVNL 75 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCCcccc-CC-cccc
Confidence 67899999999888888744332222 2345666665444333 2356677777 99999986 476432 11 2222
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651 107 DLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 183 (309)
Q Consensus 107 ~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a 183 (309)
..++++.......+..++..++. +..++..+.++.++.+.++.||.||+++|++++ ||+.++..+|...+.|.++.
T Consensus 76 ~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv 154 (285)
T TIGR02235 76 TGSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIAAALYA 154 (285)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHHHHHHH
Confidence 34578877777777666655443 235676777778889999999999999999985 99999999999999999887
Q ss_pred HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 021651 184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI 261 (309)
Q Consensus 184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~ 261 (309)
+++ ++++..+..++...+.+.++...||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+....
T Consensus 155 qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~ 226 (285)
T TIGR02235 155 QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVI 226 (285)
T ss_pred hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 764 334555667788888999999999999999999999999999999999999999998888887765443
No 46
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=1.1e-27 Score=216.23 Aligned_cols=226 Identities=20% Similarity=0.207 Sum_probs=172.5
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhh----cC
Q 021651 25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKV----NK 98 (309)
Q Consensus 25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~----n~ 98 (309)
+.+.|+++.||++.+.+..|++.+.+.+... .+.+++...+..++.+ .++....+. .|||.|.+ .|.+ .+
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~-~~~f~~~~~ll~Li~~-~~iq~~vN~--~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWY-GKSFNLLVALLALIAA-ILLQILVNL--ANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHH--HHhhhhhhcCCCCCCCcccc
Confidence 4488999999999999999988554433332 2234555444343332 245566666 99999986 5642 22
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHH
Q 021651 99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL 175 (309)
Q Consensus 99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~ 175 (309)
.++-+...+++++..+...+.+...+.+++. ...+|..+.+++++.+.++.|+.+|++++|.|+ ||+.++.++|..
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~~~vffG~l 161 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIFVGVFFGPL 161 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHHHHHHHHHH
Confidence 3456777788888887777766655544442 245677788888999999999999999999985 999999999999
Q ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 021651 176 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA 255 (309)
Q Consensus 176 ~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~ 255 (309)
...|.++.+++ .+++..+..+++..+.+..+...|++||+|+|+|+||+|+|+++|+++++++...++..+|++
T Consensus 162 ~v~g~~yiqt~------~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~ 235 (303)
T COG1575 162 IVLGAYYIQTG------RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA 235 (303)
T ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH
Confidence 99999988764 234456667888888889999999999999999999999999999999999999888888887
Q ss_pred HHHHHH
Q 021651 256 AILAAI 261 (309)
Q Consensus 256 ~i~~~~ 261 (309)
.+....
T Consensus 236 ~~~~~i 241 (303)
T COG1575 236 IVIFVI 241 (303)
T ss_pred HHHHHH
Confidence 765433
No 47
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=216.59 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=149.6
Q ss_pred HHHHHHhccccccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc--
Q 021651 73 LALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIY-- 150 (309)
Q Consensus 73 ~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Y-- 150 (309)
++++++++++ +||++|+|+|++|+|+||+|||++|+++++.++..+.++++.+... + .......++.+.|
T Consensus 55 vf~~~~~gni--iNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l-----~-~i~i~~~~i~~lY~~ 126 (299)
T PRK13592 55 VFGFWMILRI--ADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVL-----F-MNNVGWFLFLYIYGT 126 (299)
T ss_pred HHHHHHHhHH--HHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHH
Confidence 5677888999 9999999999999999999999999999999998886666655432 2 1122233445566
Q ss_pred ---cCCccccccchhhHHHHHHHHHHHHHHHH--HHHHH--HhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhh
Q 021651 151 ---SVPPFRMKRFAVAAFLIIATVRGFLLNFG--VYYAT--RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEG 223 (309)
Q Consensus 151 ---s~pP~~lKr~~~~~~l~~~~~~G~~~~~g--~~~a~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~ 223 (309)
+. ++|+.++.||+.++...|..+..| .+.+. ....|.+ ......+.+.+..++.++++|+.+|++| ||
T Consensus 127 lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-~g 201 (299)
T PRK13592 127 LMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-PK 201 (299)
T ss_pred HHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-Cc
Confidence 74 899999999999999999866433 12111 1112211 1112113445677788999999999999 88
Q ss_pred hHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---hHHH
Q 021651 224 DRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYT---KVIL 300 (309)
Q Consensus 224 D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~ 300 (309)
|++ |.+|+|+++|.|++.+++.++.+++++.+.+..+ ..++.+. +...+...++.++..+.-.++.. +++.
T Consensus 202 d~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~--~~g~~g~---~~l~~~~~~~l~~~~~~lk~p~~~~~~~~~ 275 (299)
T PRK13592 202 DET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLW--NISHVGV---VVLVLNVIWMTVQFEQFIKSPTRFNIRERV 275 (299)
T ss_pred ccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHH--HhhhhHH---HHHHHHHHHHHHHHHHHhcCCCcchhhHHH
Confidence 886 5999999999999999999888777776554322 1221111 12223455777777766444322 2477
Q ss_pred HHHHHhcc
Q 021651 301 ATCCTLGM 308 (309)
Q Consensus 301 ~~~~~~~~ 308 (309)
+++.|.+|
T Consensus 276 ~~~~ki~~ 283 (299)
T PRK13592 276 ERYTYITE 283 (299)
T ss_pred HHHHHHHH
Confidence 78888776
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.96 E-value=1.2e-26 Score=211.45 Aligned_cols=213 Identities=21% Similarity=0.204 Sum_probs=145.7
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHH-HHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCc
Q 021651 24 AFRDACWRFLRPHTIRGTALGSVAL-VARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLP 102 (309)
Q Consensus 24 ~~l~~~~~l~Rp~~~~~~~l~~~~~-~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rp 102 (309)
...++.+++.+-...+ .++.... .+..++ .+..+++... .+.+++..++|+ +||++|+|+|++|+|+||
T Consensus 25 ~~~~~~~~~~~ss~~~--a~~a~~~~~~a~lL-~g~~~~~~~~-----~~~~L~~~s~~~--iNd~~D~eiD~IN~P~r~ 94 (307)
T PRK13591 25 KFLNATFELLNSSTLV--AFSGALRIHIAFLL-LGLQSSILTC-----IAGGLIIYSVYT--LDRALDSEEDAVNRSELI 94 (307)
T ss_pred HHHHHHHHHHhhhHHH--HHHHHHHHHHHHHH-hCCCcchHHH-----HHHHHHHHHHHH--HhhhccchhhhccCcccc
Confidence 4567777875555543 2222211 111222 2333454432 134567788888 999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCC----c--cccccchhhHHHHHHHHHHHHH
Q 021651 103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVP----P--FRMKRFAVAAFLIIATVRGFLL 176 (309)
Q Consensus 103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~p----P--~~lKr~~~~~~l~~~~~~G~~~ 176 (309)
.+ +++.+..++.+.+++|+.++. ..++.. +.+++.+.++.||.+ | +++|+++..||+.++..+|...
T Consensus 95 ~~----s~~~a~~ls~la~llGl~La~-~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i 167 (307)
T PRK13591 95 GS----NKKIGLLVSLLAFLLGTYILA-MDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFI 167 (307)
T ss_pred cc----CHHHHHHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHH
Confidence 87 788888888888888887654 456543 445677889999974 4 4899999999999999999844
Q ss_pred HHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHH
Q 021651 177 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA 256 (309)
Q Consensus 177 ~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~ 256 (309)
..+. ... .+ .+ .+.....+......++++.+||++|+|+|++.|+||+|+++|+++++++...+++++++..
T Consensus 168 ~g~~---g~~-~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~l 239 (307)
T PRK13591 168 AGIA---GSY-CG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVL 239 (307)
T ss_pred HHHH---Hhh-hh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 3221 110 00 11 1111122222334467778999999999999999999999999999999998888888776
Q ss_pred HHHHH
Q 021651 257 ILAAI 261 (309)
Q Consensus 257 i~~~~ 261 (309)
+....
T Consensus 240 i~~~~ 244 (307)
T PRK13591 240 GIALI 244 (307)
T ss_pred HHHHH
Confidence 65443
No 49
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=4.8e-27 Score=211.60 Aligned_cols=158 Identities=32% Similarity=0.592 Sum_probs=128.3
Q ss_pred HHHHhccccccccccchhhhhh--cCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 021651 75 LICGNGYIVGINQIYDIGIDKV--NKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSV 152 (309)
Q Consensus 75 l~~~~~~~~~~Nd~~D~~~D~~--n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~ 152 (309)
+...+++. +||+.|+|+|++ |+|+||+++|+++++++...+.++.++++.++ +..++..+.+..+..+.++.||
T Consensus 34 ~~~~~~~~--~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~~~~Ys- 109 (257)
T PF01040_consen 34 LLQLAVYL--LNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLA-LLLGPWFLLILLLGFLLGLLYS- 109 (257)
T ss_pred HHHHHHHH--hhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHh-
Confidence 45566666 999999999999 88999999999999999998888888887766 4567777777777777889999
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccc
Q 021651 153 PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTL 232 (309)
Q Consensus 153 pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tl 232 (309)
||+++||++++++++++...+..+..+.+. ..+ +++++.+..+...+++.......+|++|+|+|+++|+||+
T Consensus 110 ~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl 182 (257)
T PF01040_consen 110 PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGG------DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTL 182 (257)
T ss_pred hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCC------cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcch
Confidence 888999999989999998877655555443 221 2234445555565677788888889999999999999999
Q ss_pred hhhhchhhHHH
Q 021651 233 ATKLGVKNIAF 243 (309)
Q Consensus 233 pv~~G~~~~~~ 243 (309)
|+++|++++++
T Consensus 183 ~v~~G~~~~~~ 193 (257)
T PF01040_consen 183 PVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999988
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=2e-20 Score=171.53 Aligned_cols=150 Identities=25% Similarity=0.291 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc--CC
Q 021651 22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KP 99 (309)
Q Consensus 22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n--~~ 99 (309)
.++++++|++++||++++...+...+.+.+. ...+...+.......+ ..++..+++|+ +||++|+|+|++| ||
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~~~a~--~~~~~~~~~~~llafl-~~~l~~sa~y~--iND~~D~e~Dr~~prk~ 81 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAPIFAG--NLLNPGALLKVLLAFV-LFCLASSAVYL--VNDIRDVEADRLHPTKR 81 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHHHHHH--hhcccchHHHHHHHHH-HHHHHHHHHHH--HHhHHHHHhhccCCCCC
Confidence 3567899999999999998877665433211 1111112222222222 23455677777 9999999999997 57
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651 100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179 (309)
Q Consensus 100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g 179 (309)
+||++||++|+++++.++.++..+|+.++. ..|+.+..+.....+..+.|| +++||++.+++++++..++.-...|
T Consensus 82 ~RPlasG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~~~~~~~~~Ys---~~lK~~~~~d~l~va~~~~lr~~~G 157 (295)
T PRK12324 82 NRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLVYLVLNLAYS---FKLKHQPVLDVFCIASGFVLRAIAG 157 (295)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh---HHhcCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999988888887654 467777666666677888999 4899999999988887766544444
Q ss_pred H
Q 021651 180 V 180 (309)
Q Consensus 180 ~ 180 (309)
+
T Consensus 158 ~ 158 (295)
T PRK12324 158 G 158 (295)
T ss_pred H
Confidence 3
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.86 E-value=8.1e-20 Score=178.08 Aligned_cols=195 Identities=23% Similarity=0.289 Sum_probs=137.9
Q ss_pred CCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHHHHHhccccccccccch
Q 021651 14 GSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDI 91 (309)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~ 91 (309)
.++..+++.+..+++|++++|||++++..+.+++..+ +.. +...+.......+ .++++.+++|+ +||+.|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~p~l~----a~~~~~~~~~~~~~~~f~-~~~l~~sa~~~--~ND~~D~ 251 (479)
T PRK08238 179 PVERVFPPRPARLRTWLKALRVHQWAKNLLVFVPLLA----AHQFGDLQALLAALLAFL-AFSLCASAVYI--LNDLLDL 251 (479)
T ss_pred CcceecCCCchHHHHHHHHhCCcHHHHHHHHHHHHHH----hcccCChHHHHHHHHHHH-HHHHHHHHHHH--HHhhHHh
Confidence 3455555667889999999999999988877664332 221 1111222221222 24466678888 9999999
Q ss_pred hhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHH
Q 021651 92 GIDKVN--KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA 169 (309)
Q Consensus 92 ~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~ 169 (309)
|+||+| ||+||++||++|+++++.++.++.++|+.+++ ..|+.++.+.+...++.+.|| +++||++.+++++++
T Consensus 252 e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~-~l~~~~~~~~~~~~~~~~~Ys---~~lKr~~~~~~~~la 327 (479)
T PRK08238 252 EADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL-ALGPAFLLVLLAYLALTLAYS---LRLKRKVLVDVLTLA 327 (479)
T ss_pred hhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhh---HHhcCCccccchHHH
Confidence 999999 57999999999999999999999888887665 367766666556677788999 489999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCC
Q 021651 170 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKI 229 (309)
Q Consensus 170 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~ 229 (309)
...++-+..|.. +. + .+++.|++ .+.++..+...+.+...|.++++..|.
T Consensus 328 ~~~~lr~~~G~~-a~----~----~~~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 328 ALYTLRIIAGAA-AI----G----VALSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHHHHHHH-Hh----c----cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 877765555532 21 1 12333332 233344566678999999999988886
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.56 E-value=8.4e-16 Score=138.30 Aligned_cols=257 Identities=16% Similarity=0.195 Sum_probs=165.2
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--CC
Q 021651 24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YL 101 (309)
Q Consensus 24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~--~R 101 (309)
...+.|+|++||+.-+..+++..++ +.++ ++..++..+...-.| -.+..++.+. +||+.+.+.|.+++| +|
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~g---Yala-p~p~s~~~l~~~tvG-T~L~S~sANa--iNQ~~E~~~DsqM~RT~~R 164 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTG---YALA-PGPFSFPTLLYTTVG-TGLCSASANA--INQIFEPPFDSQMKRTQNR 164 (409)
T ss_pred chHHHHHHhcccceEEEEeeecccc---cccc-ccCCCcchhHHHhhh-hHHHHhhhHh--hhhhccCCchhhhHhhccc
Confidence 4678999999999865444444433 3233 333555544322222 1344556566 999999999999875 89
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 021651 102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV 180 (309)
Q Consensus 102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~ 180 (309)
|+++|++|+..|+.++.+..+.|..+.++..|+....++..-++ ...+|+ .+||... .|-++|.+.|.++|+-+
T Consensus 165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAIPPLMG 239 (409)
T KOG1380|consen 165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAIPPLMG 239 (409)
T ss_pred ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccCCccch
Confidence 99999999999999999888878766665678988877765443 556898 7999874 68889999999999999
Q ss_pred HHHHHhhhhccccchHHHHHHHHHHHHHHHHH--HHHccCCChhhhHHcCCccchhhhc---hhhHHHHHHHHHHHHHHH
Q 021651 181 YYATRAALGLSFEWNAPVAFITAFVTLFALVI--AVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLLNYVA 255 (309)
Q Consensus 181 ~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~D~e~D~~~G~~Tlpv~~G---~~~~~~l~~~~~~~~~~~ 255 (309)
|.+.++.+ ++..++++...+.|-+-. .+-.++ +++..++|.+.+++.=- .+.+++.+..+..+++..
T Consensus 240 wAAasg~l------~~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~ 311 (409)
T KOG1380|consen 240 WAAASGLL------DPGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAA 311 (409)
T ss_pred hhhhccCC------CccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhccc
Confidence 98766532 345555655555664431 122222 34558999999988643 344455544444444322
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651 256 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308 (309)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (309)
... + ... ..+-+-...+...+.|..++..++. |.++.++.|++|.
T Consensus 312 ~~~-~---lT~---~wf~i~s~~~na~l~~~afkFY~~~-d~~~aRklF~aSL 356 (409)
T KOG1380|consen 312 PST-D---LTT---WWFAIESLPLNAYLAYLAFKFYRDR-DYHNARKLFFASL 356 (409)
T ss_pred ccc-C---ccc---ceeeeccccHhHHHHHHHHHHhhcc-chhhHHHHHHHHH
Confidence 211 0 001 1122223344456677777776554 6677788887764
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.26 E-value=2.9e-12 Score=110.63 Aligned_cols=238 Identities=19% Similarity=0.159 Sum_probs=151.1
Q ss_pred cccccccCCCcCCCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH--HHHHh
Q 021651 2 LQNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLA--LICGN 79 (309)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~--l~~~~ 79 (309)
.|.|-++||++++- ..+.+.|+-..||+..-....+...+.+.+ +...+..++.+.. ..++.++ .++.+
T Consensus 44 ~~~rltghp~~sg~-------~~k~~syllalrpws~sasl~p~~lgsala-yrs~~~~d~~l~~-~fl~a~avlavh~a 114 (359)
T KOG4581|consen 44 EQDRLTGHPQRSGT-------FMKCASYLLALRPWSFSASLTPTALGSALA-YRSHGAEDFRLAT-FFLCAFAVLAVHCA 114 (359)
T ss_pred ccccccCCCCcchH-------HHHHHHHHhhhcccccccccchHhhhhHHH-HhhccccchhHHH-HHHHHhhheeeecc
Confidence 46677788887764 345678999999999876666655322222 1122223333321 1222222 35678
Q ss_pred ccccccccccch--hhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHH--HhHHHHHH----HHHHHHHHHHhhcc
Q 021651 80 GYIVGINQIYDI--GIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA--FNFGPFIT----SLYCLGLFLGTIYS 151 (309)
Q Consensus 80 ~~~~~~Nd~~D~--~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~--~~~~~~~~----~l~~~~~~~~~~Ys 151 (309)
+++ .|.|+|. .+|.+...+|.+...-+.+.+...+...+...|..... ..+.|.-. ++..-++--.+.|+
T Consensus 115 gnl--vntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflyt 192 (359)
T KOG4581|consen 115 GNL--VNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYT 192 (359)
T ss_pred cch--hhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEe
Confidence 888 9999996 47876667899888888888888888777666554322 12233211 12222333456888
Q ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCcc
Q 021651 152 VPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIST 231 (309)
Q Consensus 152 ~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~T 231 (309)
.. +.+|+.. +|.+++-+.+|.+..+-+|..+++.+ .|.+.. .++...+-+-++.--|+.+|.|.||++|+-|
T Consensus 193 gg-igfkyia-lgdliili~fgpiavlfaf~~q~g~l----~~~~l~--yaiplalnteailhsnntrd~dndr~agivt 264 (359)
T KOG4581|consen 193 GG-IGFKYIA-LGDLIILILFGPIAVLFAFAIQTGHL----AIFPLG--YAIPLALNTEAILHSNNTRDADNDREAGIVT 264 (359)
T ss_pred cc-cceEEEe-ccCEEEEEeechHHHHHHHHHhcCce----eEEeeh--heeeeccchHHHhccCCCcccccccccCeEE
Confidence 64 5788875 47777666677655554555555432 232221 2333445566677789999999999999999
Q ss_pred chhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651 232 LATKLGVKNIAFLGSGLLLLNYVAAIL 258 (309)
Q Consensus 232 lpv~~G~~~~~~l~~~~~~~~~~~~i~ 258 (309)
+++.+|+..+..++..++.+.|.....
T Consensus 265 lailig~t~s~ily~~llf~py~lf~i 291 (359)
T KOG4581|consen 265 LAILIGPTASHILYAMLLFAPYLLFFI 291 (359)
T ss_pred EEEeecccHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777776676665543
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=93.41 E-value=0.67 Score=42.27 Aligned_cols=35 Identities=17% Similarity=-0.047 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651 203 AFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV 238 (309)
Q Consensus 203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~ 238 (309)
+...+...+-..+||+.|+|.|++. +++=|..-|+
T Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 44 LTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 3344555566789999999999998 7888888885
No 55
>PRK13595 ubiA prenyltransferase; Provisional
Probab=92.13 E-value=3.7 Score=37.94 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHccCCChhhhHHcCCccchh
Q 021651 208 FALVIAVTKDLPDVEGDRKFKISTLAT 234 (309)
Q Consensus 208 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv 234 (309)
.......+||+-|.|.|+++-++ -++
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~-~~i 84 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK-GGW 84 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC-CCC
Confidence 33456789999999999876544 344
No 56
>PRK13592 ubiA prenyltransferase; Provisional
Probab=92.09 E-value=4.3 Score=37.52 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCCccchhhhch---hhHHHHHHHH
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL 248 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~~~ 248 (309)
..++.+.+-.++||+.|+|-||. +++.=|+-=|+ +.++..+..+
T Consensus 54 ~vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 54 TVFGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence 34455566778999999999954 57888887775 4444444333
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=92.04 E-value=1.6 Score=40.53 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=22.3
Q ss_pred cccccccccchhhhhhcCCC-CcccccccCHHHHHHHHHH
Q 021651 81 YIVGINQIYDIGIDKVNKPY-LPIAAGDLSVQSAWFLVIF 119 (309)
Q Consensus 81 ~~~~~Nd~~D~~~D~~n~~~-Rpl~sG~ls~~~a~~~~~~ 119 (309)
+++-.||..|+|+|+.+.++ -|. ++.++.+..+...
T Consensus 189 ~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~ 225 (304)
T PRK07419 189 LILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPW 225 (304)
T ss_pred HHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHH
Confidence 33337999999999998653 233 3444444444333
No 58
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.43 E-value=2.7 Score=38.85 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=18.2
Q ss_pred HhccccccccccchhhhhhcCCCC
Q 021651 78 GNGYIVGINQIYDIGIDKVNKPYL 101 (309)
Q Consensus 78 ~~~~~~~~Nd~~D~~~D~~n~~~R 101 (309)
..++++-.|+..|.|+|++|+|+-
T Consensus 188 l~~~Il~aNNirDie~D~~~gk~T 211 (303)
T COG1575 188 LIANILLANNLRDIEEDIRNGKYT 211 (303)
T ss_pred HHHHHHHhcccccchhHHhcCCcc
Confidence 334444489999999999998754
No 59
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=91.39 E-value=2.7 Score=39.20 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.4
Q ss_pred cccccchhhhhhcC-CCCcccccc
Q 021651 85 INQIYDIGIDKVNK-PYLPIAAGD 107 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~-~~Rpl~sG~ 107 (309)
.||+.|+|.|+.+. |.-|+.-|+
T Consensus 208 ~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 208 LNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHhHhHHHcCCcccceeEcH
Confidence 79999999999874 445655554
No 60
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=90.84 E-value=2 Score=39.93 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.3
Q ss_pred HccCCChhhhHHcCCccchhhhch
Q 021651 215 TKDLPDVEGDRKFKISTLATKLGV 238 (309)
Q Consensus 215 ~~d~~D~e~D~~~G~~Tlpv~~G~ 238 (309)
+||+.|+|-|+. ++++.|+.=|+
T Consensus 72 iNd~~D~~iD~i-nkp~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRI-NKPHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhc-CCCCCCcCCcc
Confidence 999999999995 46888877675
No 61
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=90.18 E-value=2.2 Score=37.85 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=25.5
Q ss_pred HHHHHHHHHHccCCChhhhHHc-CCccchhhhchhh
Q 021651 206 TLFALVIAVTKDLPDVEGDRKF-KISTLATKLGVKN 240 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~D~~~-G~~Tlpv~~G~~~ 240 (309)
++.....+.+||+.|.|.|+.. +++.-|..-|+-+
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 3555667789999999999996 4556666666543
No 62
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=90.13 E-value=4.3 Score=37.07 Aligned_cols=34 Identities=26% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~ 238 (309)
..++...+-..+||+-|+|.|++.. ++=|+.-|+
T Consensus 45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~ 78 (279)
T PRK09573 45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence 3445556667899999999999764 666776665
No 63
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=89.97 E-value=15 Score=33.82 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=24.2
Q ss_pred cccccchhhhhhcCC-CCcccccccCHHHHHHHHHHHHHHHH
Q 021651 85 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTGL 125 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~~~~~~ 125 (309)
+|++.|+|.|++.+. .-|. ++..+.+..+...+..++.
T Consensus 184 in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~ 222 (282)
T PRK12875 184 FSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAA 222 (282)
T ss_pred HHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHH
Confidence 799999999997653 3343 4445555555555544443
No 64
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.94 E-value=8.7 Score=34.98 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=17.1
Q ss_pred cccccchhhhhhcC-CCCcccccc
Q 021651 85 INQIYDIGIDKVNK-PYLPIAAGD 107 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~-~~Rpl~sG~ 107 (309)
+||..|+|.|+.++ +.=|..-|+
T Consensus 180 ~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 180 VFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHhcccchhHHHcCCcccchhcch
Confidence 79999999999875 344555554
No 65
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=89.82 E-value=2.5 Score=39.09 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=22.9
Q ss_pred HHHHHHHHHccCCChhhhHHc-CCccchhhhch
Q 021651 207 LFALVIAVTKDLPDVEGDRKF-KISTLATKLGV 238 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~~~-G~~Tlpv~~G~ 238 (309)
+...+...+||+.|+|.||+. .++.=|..=|+
T Consensus 57 l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence 444556789999999999996 34455555554
No 66
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=89.57 E-value=2.5 Score=39.32 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=23.5
Q ss_pred HHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651 206 TLFALVIAVTKDLPDVEGDRKFKISTLATKLGV 238 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~ 238 (309)
.+...+.+.+||+-|.|.|++.+ ++=|+.-|+
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~ 95 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGA 95 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCc
Confidence 34555668899999999998876 455666664
No 67
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=89.31 E-value=3.7 Score=37.69 Aligned_cols=37 Identities=24% Similarity=0.003 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651 203 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK 239 (309)
Q Consensus 203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~ 239 (309)
+..++...+...+||+.|+|-||+.-+ |.=|..-|+-
T Consensus 54 l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v 91 (289)
T COG0382 54 LAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRV 91 (289)
T ss_pred HHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence 333455556678999999999999877 5677777763
No 68
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=89.23 E-value=2.7 Score=38.81 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651 205 VTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK 239 (309)
Q Consensus 205 ~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~ 239 (309)
.++...+-..+||+.|+|-|++..+ |+-|..-|+-
T Consensus 54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i 89 (289)
T PLN02809 54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL 89 (289)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence 3445555678999999999999876 5788888863
No 69
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=89.18 E-value=4.1 Score=37.49 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=22.4
Q ss_pred ccccccchhhhhhcCCC-CcccccccCHHHHHHHHHHHH
Q 021651 84 GINQIYDIGIDKVNKPY-LPIAAGDLSVQSAWFLVIFFA 121 (309)
Q Consensus 84 ~~Nd~~D~~~D~~n~~~-Rpl~sG~ls~~~a~~~~~~~~ 121 (309)
-.||..|+|+|+.+.++ -+. ++.++.+..+...+.
T Consensus 179 ~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~ 214 (285)
T TIGR02235 179 FCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI 214 (285)
T ss_pred HhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence 37999999999998653 232 444555544444433
No 70
>PLN00012 chlorophyll synthetase; Provisional
Probab=89.00 E-value=6.5 Score=37.68 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=17.8
Q ss_pred cccccchhhhhhcC-CCCcccccc
Q 021651 85 INQIYDIGIDKVNK-PYLPIAAGD 107 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~-~~Rpl~sG~ 107 (309)
.||+-|+|.|+... +.-|+.-|+
T Consensus 271 vnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 271 VNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HhhhcchhhHHHcCCcccceeech
Confidence 79999999999864 555665554
No 71
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.93 E-value=2.2 Score=39.84 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=24.7
Q ss_pred cccccccccchhhhhhcCCC-CcccccccCHHHHHHHHHHHHHHH
Q 021651 81 YIVGINQIYDIGIDKVNKPY-LPIAAGDLSVQSAWFLVIFFAVTG 124 (309)
Q Consensus 81 ~~~~~Nd~~D~~~D~~n~~~-Rpl~sG~ls~~~a~~~~~~~~~~~ 124 (309)
+++-.||..|+|+|+.+.++ -|. ++.++.+..+...+..++
T Consensus 204 ~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a 245 (317)
T PRK13387 204 NIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS 245 (317)
T ss_pred HHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence 33338999999999998653 233 444555555444443333
No 72
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=88.60 E-value=2.2 Score=39.10 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=26.1
Q ss_pred HHHHHHHHHccCCChhhhHHcCCccchhhhch---hhHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGS 246 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~ 246 (309)
+...+-+.+||+-|.|.|++.+ ++=|+.-|. |.++.+..
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~ 90 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWL 90 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHH
Confidence 4455567899999999999776 555665554 44444433
No 73
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=88.55 E-value=6 Score=36.17 Aligned_cols=36 Identities=19% Similarity=-0.021 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 203 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
+...+...+-..+||+.|+|-|++..+ +.=|..-|+
T Consensus 43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 79 (279)
T PRK12869 43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL 79 (279)
T ss_pred HHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence 333445556688999999999999765 455665665
No 74
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=88.29 E-value=8.9 Score=34.88 Aligned_cols=31 Identities=19% Similarity=-0.059 Sum_probs=23.6
Q ss_pred HHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651 207 LFALVIAVTKDLPDVEGDRKFKISTLATKLGV 238 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~ 238 (309)
+...+-..+||+-|+|.|+.. +++=|+.-|+
T Consensus 48 ~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (277)
T PRK12883 48 LGCSGGNTINDYFDYEIDKIN-RPNRPLPRGA 78 (277)
T ss_pred HHHHHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence 334556789999999999975 4777777665
No 75
>PLN02922 prenyltransferase
Probab=87.02 E-value=3.3 Score=38.73 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=22.9
Q ss_pred cccccccccchhhhhhcCCCC-cccccccCHHHHHHHHHH
Q 021651 81 YIVGINQIYDIGIDKVNKPYL-PIAAGDLSVQSAWFLVIF 119 (309)
Q Consensus 81 ~~~~~Nd~~D~~~D~~n~~~R-pl~sG~ls~~~a~~~~~~ 119 (309)
+++-.||..|+|+|++++++- |. ++.++.+..+...
T Consensus 203 ~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~ 239 (315)
T PLN02922 203 LILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHH
Confidence 444489999999999987633 33 3444555444433
No 76
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=86.98 E-value=4.9 Score=36.58 Aligned_cols=33 Identities=24% Similarity=0.014 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651 205 VTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV 238 (309)
Q Consensus 205 ~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~ 238 (309)
.++...+-..+||+-|+|-|++. +++=|..-|+
T Consensus 47 ~~l~~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~ 79 (276)
T PRK12882 47 VFLATGAGNAINDYFDREIDRIN-RPDRPIPSGA 79 (276)
T ss_pred HHHHHHHHHHHHHHhhhcccccc-CCCCCcCCCC
Confidence 33445556789999999999964 4777877775
No 77
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=86.82 E-value=3.7 Score=37.64 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=24.5
Q ss_pred HHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 206 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
++...+-..+||+.|+|-|++..+ ++=|+.-|+
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 88 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGA 88 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence 344555678999999999998665 466777775
No 78
>PRK13591 ubiA prenyltransferase; Provisional
Probab=86.70 E-value=8.4 Score=35.84 Aligned_cols=30 Identities=20% Similarity=0.050 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCCccchh
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKISTLAT 234 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv 234 (309)
..++.+.+...+||+-|+|.|+. +++..|.
T Consensus 66 ~~~L~~~s~~~iNd~~D~eiD~I-N~P~r~~ 95 (307)
T PRK13591 66 AGGLIIYSVYTLDRALDSEEDAV-NRSELIG 95 (307)
T ss_pred HHHHHHHHHHHHhhhccchhhhc-cCccccc
Confidence 34466777889999999999976 4554444
No 79
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=86.30 E-value=26 Score=32.00 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=20.4
Q ss_pred cccccchhhhhhcCC-CCcccccccCHHHHHHHHHHH
Q 021651 85 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFF 120 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~ 120 (309)
.||..|+|.|+.+.+ .-|. ++..+.+..+...+
T Consensus 187 ~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l 220 (293)
T PRK06080 187 ANNIRDIETDRENGKNTLAV---RLGDKNARRLHAAL 220 (293)
T ss_pred hcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHH
Confidence 799999999998754 2333 33344444444333
No 80
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=86.17 E-value=3.9 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
..++...+-..+||+.|+|-|++.-+ |.=|+.-|+
T Consensus 52 g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 52 GGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 33455556678999999999998887 588887776
No 81
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=85.36 E-value=5.2 Score=36.63 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651 206 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK 239 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~ 239 (309)
.+...+-..+||+.|+|-|++..+ +.=|+.-|+-
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 84 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAV 84 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCc
Confidence 344455678999999999997765 3567666753
No 82
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=84.84 E-value=12 Score=34.41 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
...+...+-..+||+.|+|-|++..+ ++=|+.-|+
T Consensus 52 ~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~ 87 (296)
T PRK04375 52 GIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGR 87 (296)
T ss_pred HHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence 33345555678999999999998654 455655565
No 83
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.72 E-value=5.6 Score=36.63 Aligned_cols=34 Identities=15% Similarity=-0.068 Sum_probs=24.7
Q ss_pred HHHHHHHHHHccCCChhhhHHcCCc-cchhhhchh
Q 021651 206 TLFALVIAVTKDLPDVEGDRKFKIS-TLATKLGVK 239 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~~G~~ 239 (309)
++...+-..+||+.|+|-|++..++ .=|..-|+-
T Consensus 56 ~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~i 90 (290)
T PRK12870 56 LATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRL 90 (290)
T ss_pred HHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCc
Confidence 3444555689999999999876654 667777763
No 84
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=84.07 E-value=15 Score=33.84 Aligned_cols=35 Identities=20% Similarity=0.051 Sum_probs=22.0
Q ss_pred ccccccchhhhhhcCCCCcccccccCHHHHHHHHHHH
Q 021651 84 GINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF 120 (309)
Q Consensus 84 ~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~ 120 (309)
-.||..|+|.|+.+.++-. .-++.++.+..+...+
T Consensus 182 ~~Nn~~D~~~D~~~Gk~Tl--~v~lG~~~a~~l~~~l 216 (284)
T TIGR00751 182 NINNLRDIPTDARAGKNTL--AVRLGDARTRMYHQGL 216 (284)
T ss_pred HHcCcccchhHHHcCCEee--hhhcchHhHHHHHHHH
Confidence 3799999999999865321 1244455554444433
No 85
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=83.61 E-value=7.7 Score=36.52 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHHccCCChhhhHHcCCccchhhhch---hhHHHHHHHH
Q 021651 212 IAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL 248 (309)
Q Consensus 212 ~~~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~~~ 248 (309)
-..+||+-|+|.|++.+ ||=|+.-|+ +.++.+...+
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l 104 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIV 104 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHH
Confidence 36799999999999764 566666664 4444444333
No 86
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=83.57 E-value=20 Score=32.94 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 203 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
+...+...+-..+||+.|+|-|++..+ ++=|..-|+
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 82 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA 82 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence 334445555678999999999998864 245666675
No 87
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=82.71 E-value=12 Score=34.06 Aligned_cols=37 Identities=8% Similarity=-0.110 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 202 TAFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
.+..++...+-..+||+.|+|.|++..+ ++=|+.-|+
T Consensus 42 ~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~ 79 (282)
T TIGR01475 42 LIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGL 79 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCC
Confidence 3444456667789999999999998742 344555554
No 88
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=82.30 E-value=9.1 Score=34.92 Aligned_cols=35 Identities=23% Similarity=0.039 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
...+...+-..+||+.|+|-|++..+ ++=|+.-|+
T Consensus 43 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 78 (280)
T TIGR01473 43 GTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGR 78 (280)
T ss_pred HHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence 33445556678999999999998554 455665564
No 89
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=82.23 E-value=17 Score=33.45 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=15.6
Q ss_pred cccccchhhhhhcC-CCCccccc
Q 021651 85 INQIYDIGIDKVNK-PYLPIAAG 106 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~-~~Rpl~sG 106 (309)
+.++.|+|.|++.. +.-|+-=|
T Consensus 178 iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 178 IYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHhcchhhHHHcCCCchHHHHC
Confidence 78889999999775 44454444
No 90
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=81.97 E-value=17 Score=33.47 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=19.4
Q ss_pred HhccccccccccchhhhhhcC-CCCcccccc
Q 021651 78 GNGYIVGINQIYDIGIDKVNK-PYLPIAAGD 107 (309)
Q Consensus 78 ~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 107 (309)
..-.. +|++.|+|.|++.. |.-|+.-|+
T Consensus 181 ~~~~~--~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 181 AGFDL--LYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHH--HHHhccHHHHHHcCCCcccHHhhh
Confidence 34444 79999999998764 555665554
No 91
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=81.23 E-value=9.5 Score=34.88 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651 207 LFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK 239 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~ 239 (309)
+...+-..+||+.|+|-|++..+ +.=|..-|+-
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 86 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAV 86 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCc
Confidence 44455678999999999987665 3567766763
No 92
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=80.48 E-value=11 Score=35.05 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
..++...+-..+||+.|+|-|++..+ +.=|+.-|+
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~ 90 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGE 90 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence 33445556678999999999998765 356766675
No 93
>PRK08238 hypothetical protein; Validated
Probab=79.99 E-value=12 Score=37.00 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHccCCChhhhHHcC-Cccchhhhch
Q 021651 205 VTLFALVIAVTKDLPDVEGDRKFK-ISTLATKLGV 238 (309)
Q Consensus 205 ~~~~~~~~~~~~d~~D~e~D~~~G-~~Tlpv~~G~ 238 (309)
.++...+..++||+-|+|.||+.- +|.=|..-|+
T Consensus 235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~ 269 (479)
T PRK08238 235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGA 269 (479)
T ss_pred HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCC
Confidence 345555677899999999999974 3566766665
No 94
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.61 E-value=10 Score=35.34 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHccCCChhhhHHcCCc-cchhhhch
Q 021651 205 VTLFALVIAVTKDLPDVEGDRKFKIS-TLATKLGV 238 (309)
Q Consensus 205 ~~~~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~~G~ 238 (309)
..+...+-..+||+.|+|-|++..+. .=|+.-|+
T Consensus 81 ~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~ 115 (314)
T PRK12878 81 AIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQ 115 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Confidence 33445556789999999999876542 45655564
No 95
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=79.10 E-value=28 Score=32.19 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=18.5
Q ss_pred cccccchhhhhhcC-CCCccccccc
Q 021651 85 INQIYDIGIDKVNK-PYLPIAAGDL 108 (309)
Q Consensus 85 ~Nd~~D~~~D~~n~-~~Rpl~sG~l 108 (309)
.||..|+|.|+.+. |.-|+.-|+-
T Consensus 194 ~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 194 LNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHhhhhhHHHcCCeeeeeeechH
Confidence 79999999999875 4557666653
No 96
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=77.78 E-value=45 Score=30.71 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcC
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFK 228 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G 228 (309)
...+...+.+..||+.|.|.|+...
T Consensus 48 ~~~l~~~~~n~~Ndy~D~~~g~D~~ 72 (296)
T PRK05951 48 GYFLLHASLNVFNDYKDYVLDCDHH 72 (296)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCccc
Confidence 3335555667899999966655554
No 97
>PLN02776 prenyltransferase
Probab=77.05 E-value=20 Score=33.87 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 202 TAFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
.+..++...+-..+||+.|+|-|++..+ +.=|+.-|+
T Consensus 35 ~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 35 CAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCC
Confidence 3344455556678999999999999776 466666665
No 98
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=76.97 E-value=38 Score=31.39 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
..++...+-..+||+.|+|-|++.-+ ++=|+.-|+
T Consensus 57 g~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~ 92 (300)
T PRK13106 57 ALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGA 92 (300)
T ss_pred HHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCC
Confidence 33445555668999999999998753 345666675
No 99
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=76.62 E-value=17 Score=33.53 Aligned_cols=36 Identities=17% Similarity=-0.049 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK 239 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~ 239 (309)
...+...+-..+||+.|+|-|++.-+ +.=|+.-|+-
T Consensus 50 ~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~i 86 (291)
T PRK12886 50 AMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI 86 (291)
T ss_pred HHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCc
Confidence 33344455568999999999998764 3457777753
No 100
>PLN02878 homogentisate phytyltransferase
Probab=75.17 E-value=15 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHccCCChhhhHHcCCccchhhhch---hhHHHHHHHH
Q 021651 214 VTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL 248 (309)
Q Consensus 214 ~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~~~ 248 (309)
-+||+.|+|-| |.+++..|+-=|+ +.+..++..+
T Consensus 41 glNd~~D~EID-kINkP~rPIpSG~iS~~~a~~~~~~~ 77 (280)
T PLN02878 41 GLNQLYDIEID-KVNKPYLPLASGEFSVATGVAIVTSF 77 (280)
T ss_pred chhhhhhhccc-ccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 48999999999 5789999999997 4444444433
No 101
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=75.08 E-value=20 Score=33.33 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV 238 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~ 238 (309)
.+.+.-.+-..+||+-|+|-|++.-+ ++=|..-|+
T Consensus 55 a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 55 AFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 33344444468999999999999886 566777776
No 102
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=73.81 E-value=55 Score=30.08 Aligned_cols=20 Identities=20% Similarity=0.019 Sum_probs=14.4
Q ss_pred HHccCCChhhhHHcCCccch
Q 021651 214 VTKDLPDVEGDRKFKISTLA 233 (309)
Q Consensus 214 ~~~d~~D~e~D~~~G~~Tlp 233 (309)
-+||+-|.|.|++..+|.=|
T Consensus 52 ~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 52 GINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred hhhhhhhhhcCCCCcccCCC
Confidence 34899888888887666444
No 103
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=55.09 E-value=10 Score=33.19 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHccCCChhhhH----------HcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVEGDR----------KFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~----------~~G~~Tlpv~~G~~~~ 241 (309)
-...++++.+|++|..+|. +.|+.|+|+....+..
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 4456678999999998888 8999999999984433
No 104
>PRK10581 geranyltranstransferase; Provisional
Probab=54.45 E-value=13 Score=34.49 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=33.1
Q ss_pred HHHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhHHHHHHH
Q 021651 206 TLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSG 247 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~l~~~ 247 (309)
--+..++++..|+.|+. .|.+.|+.|+|+.+|.+.+...+.-
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~ 265 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARD 265 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHH
Confidence 34566789999999975 4577899999999999888775543
No 105
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=39.36 E-value=3.2e+02 Score=25.44 Aligned_cols=48 Identities=15% Similarity=-0.079 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHccCCChhhhHHcCCc-cchhhhch---hhHHHHHHHHHHH
Q 021651 204 FVTLFALVIAVTKDLPDVEGDRKFKIS-TLATKLGV---KNIAFLGSGLLLL 251 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~~G~---~~~~~l~~~~~~~ 251 (309)
...+-..+-..+|+.-|+|-|++..+. .=|+.-|+ +.+......+..+
T Consensus 60 g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~ 111 (304)
T COG0109 60 GGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVA 111 (304)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHH
Confidence 334555566789999999999887642 23555554 5555554444333
No 106
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=35.37 E-value=21 Score=33.27 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhh
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKN 240 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~ 240 (309)
-...++++.+|+.|.. +|.+.|++|+|+.+..+.
T Consensus 201 ~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 245 (319)
T TIGR02748 201 YVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMED 245 (319)
T ss_pred HHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcC
Confidence 4566788999998875 567889999999998753
No 107
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=34.88 E-value=17 Score=33.94 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.4
Q ss_pred HHHHHHHHHccCCChhhh-----------HHcCCccchhhhchhhHHH
Q 021651 207 LFALVIAVTKDLPDVEGD-----------RKFKISTLATKLGVKNIAF 243 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D-----------~~~G~~Tlpv~~G~~~~~~ 243 (309)
-...++++..|+.|+.+| .+.|++|+|+.++.+.+..
T Consensus 205 ~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 205 NLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 445678899999998874 5668899999999876544
No 108
>PLN02890 geranyl diphosphate synthase
Probab=32.57 E-value=4.8e+02 Score=25.47 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHccCCChhh-----------hHHcCCccchhhhchh
Q 021651 206 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVK 239 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~ 239 (309)
--+..++++..|+.|..+ |.+.|+.|+|+.+..+
T Consensus 298 ~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~ 342 (422)
T PLN02890 298 RNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAME 342 (422)
T ss_pred HHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHh
Confidence 345667889999999865 4778999999998764
No 109
>CHL00151 preA prenyl transferase; Reviewed
Probab=31.08 E-value=24 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhh
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKN 240 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~ 240 (309)
-+..++++..|+.|..+ |.+.|+.|+|+.++.+.
T Consensus 206 ~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 206 HLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 45567888999998654 77889999999998653
No 110
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=30.70 E-value=40 Score=31.53 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchh
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVK 239 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~ 239 (309)
-+..++++..|+.|.. +|.+.|+.|+|+.+..+
T Consensus 205 ~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 205 HLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
Confidence 4566788999999865 56789999999998864
No 111
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=28.49 E-value=32 Score=30.89 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHH
Q 021651 204 FVTLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAF 243 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~ 243 (309)
+..-....+++.+|+.|..+ |.+.|+.|+|+.++.+....
T Consensus 174 ~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~ 224 (260)
T PF00348_consen 174 FGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERARE 224 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHH
No 112
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=27.10 E-value=42 Score=30.07 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChhh-----------hHHcCCccchhhhc
Q 021651 204 FVTLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLG 237 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G 237 (309)
+..-+...+++.+|+.|..+ |.+.|+.|+|+.++
T Consensus 177 ~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~ 221 (259)
T cd00685 177 FGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLA 221 (259)
T ss_pred HHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHH
No 113
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=26.36 E-value=1.1e+02 Score=30.34 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=13.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHH
Q 021651 155 FRMKRFAVAAFLIIATVRGFLLNF 178 (309)
Q Consensus 155 ~~lKr~~~~~~l~~~~~~G~~~~~ 178 (309)
+++||..-.|. +.+...|....+
T Consensus 438 lfWKr~n~~GA-i~G~~~GL~~tl 460 (529)
T COG4147 438 LFWKRLNTAGA-IAGMLLGLIVTL 460 (529)
T ss_pred HHHhhccHHhH-HHHHHHHHHHHH
Confidence 37888765443 445555654433
No 114
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=25.42 E-value=6.3e+02 Score=24.46 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=61.9
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHhhccC-----CccccccchhhHHHHHHHHH
Q 021651 104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLY------CLGLFLGTIYSV-----PPFRMKRFAVAAFLIIATVR 172 (309)
Q Consensus 104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~------~~~~~~~~~Ys~-----pP~~lKr~~~~~~l~~~~~~ 172 (309)
.++|+++|..+.....+++++-++.+...|...+.+. ..+.+....++. || =||-.-.+-+..|...
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP--GKRGRALALVFTGLTL 148 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHH
Confidence 3556667777777777777776555432232222111 122232332322 43 2222223334433333
Q ss_pred HHH--HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCC--ChhhhHHcCCccchhhhchhhHHHH
Q 021651 173 GFL--LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLP--DVEGDRKFKISTLATKLGVKNIAFL 244 (309)
Q Consensus 173 G~~--~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--D~e~D~~~G~~Tlpv~~G~~~~~~l 244 (309)
+.+ .|+|.+.. ..+.|....+.++. .....+ .....-.| |.+++++...++..-.+.+++....
T Consensus 149 A~v~GvPLGt~ig------~~~GWR~~F~~ia~-l~ll~~-~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~ 216 (394)
T COG2814 149 ATVLGVPLGTFLG------QLFGWRATFLAIAV-LALLAL-LLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLG 216 (394)
T ss_pred HHHHhccHHHHHH------HHhhHHHHHHHHHH-HHHHHH-HHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHH
Confidence 322 25565542 22345433332222 112222 22355666 6777777777778888887755443
No 115
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=24.58 E-value=5.8e+02 Score=23.76 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHHHHHHccCCChh-----------hhHHcCCccchhhhchh
Q 021651 206 TLFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVK 239 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~ 239 (309)
--+..++++..|+.|.. +|.+.|+.|+|+.+..+
T Consensus 201 ~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~ 245 (323)
T PRK10888 201 RYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMH 245 (323)
T ss_pred HHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHH
Confidence 34566788999998875 45668999999998764
No 116
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.23 E-value=3.3e+02 Score=20.49 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhccccccccccch
Q 021651 69 FSGLLALICGNGYIVGINQIYDI 91 (309)
Q Consensus 69 l~~~~~l~~~~~~~~~~Nd~~D~ 91 (309)
.+|+-++..-.-.++.+||+-|.
T Consensus 47 ~fG~Ysl~~lgy~v~tFnDcpeA 69 (91)
T PF08285_consen 47 SFGCYSLFTLGYGVATFNDCPEA 69 (91)
T ss_pred HHHHHHHHHHHHhhhccCCCHHH
Confidence 34433344433444559999774
No 117
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=23.06 E-value=38 Score=22.16 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=11.3
Q ss_pred ccccccccccchhhhh
Q 021651 80 GYIVGINQIYDIGIDK 95 (309)
Q Consensus 80 ~~~~~~Nd~~D~~~D~ 95 (309)
.+..++|.+.|.++|=
T Consensus 19 lyl~ald~~CDQg~~F 34 (47)
T PRK10299 19 LWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHhcCCccc
Confidence 3344489999998764
No 118
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.41 E-value=2.2e+02 Score=21.48 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=16.7
Q ss_pred hhhcCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 021651 94 DKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLI 127 (309)
Q Consensus 94 D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l 127 (309)
|++|+|.|-+ -.+..|+ ..+...+++|+..
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~ 36 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILS 36 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHH
Confidence 5666666654 5667777 4444444445443
No 119
>PLN02857 octaprenyl-diphosphate synthase
Probab=20.55 E-value=47 Score=32.33 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchh
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVK 239 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~ 239 (309)
-+..++++..|+.|.. +|.+.|+.|+|+.+-.+
T Consensus 299 ~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~ 342 (416)
T PLN02857 299 NLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALE 342 (416)
T ss_pred HHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHh
Confidence 4566788999998865 56789999999998654
Done!