Query 021651
Match_columns 309
No_of_seqs 261 out of 1960
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 65.3 4.7 0.00016 36.0 3.7 44 205-248 205-259 (297)
2 3lsn_A Geranyltranstransferase 57.6 4 0.00014 36.6 1.8 43 206-248 213-266 (304)
3 3ts7_A Geranyltranstransferase 55.8 4 0.00014 37.0 1.5 42 207-248 220-272 (324)
4 3lom_A Geranyltranstransferase 55.3 4.3 0.00015 36.6 1.6 42 207-248 221-273 (313)
5 3p8r_A Geranyltranstransferase 52.1 4.9 0.00017 36.0 1.4 42 207-248 220-272 (302)
6 4f62_A Geranyltranstransferase 51.1 5.5 0.00019 35.9 1.6 42 207-248 213-265 (317)
7 3p8l_A Geranyltranstransferase 50.4 5.6 0.00019 35.6 1.5 42 207-248 217-269 (302)
8 2h8o_A Geranyltranstransferase 47.0 6.6 0.00023 35.7 1.4 42 207-248 253-305 (335)
9 3llw_A Geranyltranstransferase 46.2 7.9 0.00027 34.8 1.8 43 206-248 220-271 (311)
10 3uca_A Geranyltranstransferase 45.9 7.1 0.00024 35.3 1.4 42 207-248 242-294 (324)
11 1rqj_A Geranyltranstransferase 43.4 11 0.00036 33.7 2.2 41 207-247 214-265 (299)
12 3pde_A Farnesyl-diphosphate sy 41.5 16 0.00056 32.6 3.1 42 207-248 216-268 (309)
13 2j1p_A Geranylgeranyl pyrophos 41.3 9.2 0.00032 34.0 1.4 39 207-248 224-262 (293)
14 1rtr_A Geranyltranstransferase 41.1 9 0.00031 34.2 1.3 42 207-248 209-261 (301)
15 3kra_B Geranyl diphosphate syn 33.3 61 0.0021 28.3 5.4 40 210-249 74-113 (274)
16 3oyr_A Trans-isoprenyl diphosp 31.6 17 0.00058 33.1 1.6 35 206-240 222-267 (345)
17 3npk_A Geranyltranstransferase 29.9 15 0.0005 32.7 0.8 40 207-246 206-254 (291)
18 2e8v_A Geranylgeranyl pyrophos 27.9 20 0.00068 32.5 1.3 35 207-241 205-250 (340)
19 3rmg_A Octaprenyl-diphosphate 25.5 26 0.00091 31.6 1.7 35 207-241 205-249 (334)
20 3aqb_B Component B of hexapren 25.3 22 0.00076 31.9 1.2 35 207-241 202-247 (325)
21 3pko_A Geranylgeranyl pyrophos 24.6 20 0.00069 32.4 0.7 35 207-241 215-260 (334)
22 1wy0_A Geranylgeranyl pyrophos 24.2 22 0.00076 32.1 1.0 34 207-240 209-253 (342)
23 3mzv_A Decaprenyl diphosphate 24.0 20 0.0007 32.4 0.7 34 207-240 211-255 (341)
24 1v4e_A Octoprenyl-diphosphate 24.0 15 0.0005 32.7 -0.3 37 207-243 195-241 (299)
25 3lk5_A Geranylgeranyl pyrophos 23.7 25 0.00085 32.4 1.2 35 207-241 248-293 (380)
26 3ipi_A Geranyltranstransferase 22.8 33 0.0011 30.4 1.7 31 207-237 198-233 (295)
27 3tc1_A Octaprenyl pyrophosphat 22.1 25 0.00086 31.4 0.9 37 204-240 188-235 (315)
28 2q80_A Geranylgeranyl pyrophos 21.8 27 0.00091 31.0 1.0 33 207-239 180-223 (301)
29 1wmw_A Geranylgeranyl diphosph 21.4 22 0.00077 31.9 0.3 35 206-240 202-246 (330)
30 3nf2_A Putative polyprenyl syn 21.3 30 0.001 31.5 1.2 34 207-240 215-259 (352)
31 2qis_A Farnesyl pyrophosphate 20.2 22 0.00076 32.6 0.1 35 207-241 255-299 (374)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=65.28 E-value=4.7 Score=36.03 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 205 VTLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 205 ~~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
.--...++++.+|+.|..+ |.+.|+.|+|+.+|.+.++....-+
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 259 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADL 259 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 3355667899999999865 6678999999999999887766544
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=57.58 E-value=4 Score=36.63 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 206 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
--...++++.+|+.|..+ |.+.|+.|+|+.+|.+.++..+.-.
T Consensus 213 ~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 213 QAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 345667889999999865 6678999999999999888776544
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=55.82 E-value=4 Score=36.96 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=29.2
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.+|.+.++..+.-.
T Consensus 220 ~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 220 CIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 45566788888888754 6788999999999999888776544
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=55.26 E-value=4.3 Score=36.56 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.+|.+.++....-+
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~ 273 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVH 273 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 45567788888888765 6688999999999999888766544
No 5
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=52.13 E-value=4.9 Score=35.96 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.+|.+.++..+.-.
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 272 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTL 272 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 44566788888887654 6788999999999999887766543
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=51.09 E-value=5.5 Score=35.94 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|.. .|.+.|+.|+|+.+|.+.++..+.-.
T Consensus 213 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 265 (317)
T 4f62_A 213 AIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRL 265 (317)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4556678888888874 46788999999999999988876644
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=50.43 E-value=5.6 Score=35.61 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|.. .|.+.|+.|+|+.+|.++++..+.-.
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~ 269 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQ 269 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4556678888888874 57888999999999999988776543
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=47.05 E-value=6.6 Score=35.69 Aligned_cols=42 Identities=19% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.+|.+.+...+.-.
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~ 305 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 45566788888888754 6778999999999988877765533
No 9
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=46.23 E-value=7.9 Score=34.79 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=31.5
Q ss_pred HHHHHHHHHHccCCChhhhH---------HcCCccchhhhchhhHHHHHHHH
Q 021651 206 TLFALVIAVTKDLPDVEGDR---------KFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~D~---------~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
--...++++.+|+.|..+|. +.|+.|+|+.+|.+++.....-+
T Consensus 220 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~ 271 (311)
T 3llw_A 220 LKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTL 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 34556788999999998775 67999999999999887665533
No 10
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=45.95 E-value=7.1 Score=35.33 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|.. .|.+.|+.|+|+.+|.++++..+.-+
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~ 294 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNI 294 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHH
Confidence 4556678888888874 47788999999999999887766543
No 11
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=43.44 E-value=11 Score=33.65 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=31.3
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSG 247 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~ 247 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.+|.+.+.....-
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~ 265 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARD 265 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44566788888888764 567799999999999887665543
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=41.47 E-value=16 Score=32.65 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++..|+.|.. .|.+.|+.|+|+.+|.+++.....-+
T Consensus 216 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~ 268 (309)
T 3pde_A 216 AFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDT 268 (309)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHH
Confidence 4556678888888875 47788999999999999887765543
No 13
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=41.33 E-value=9.2 Score=33.95 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|..+|. ++|+|+.+|.+.++..+.-.
T Consensus 224 ~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 224 CIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 4566789999999999998 89999999998887765533
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=41.14 E-value=9 Score=34.19 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhHHHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNIAFLGSGL 248 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~l~~~~ 248 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.+|.+.++..+.-.
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~ 261 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYH 261 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 45567888999988754 6677999999999998887765543
No 15
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=33.28 E-value=61 Score=28.27 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHH
Q 021651 210 LVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL 249 (309)
Q Consensus 210 ~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~ 249 (309)
.+..+..|+++.++|.+.|++|.-.++|+..+....-.+.
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll 113 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIV 113 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHH
Confidence 3445788999444466799999999999997765554443
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=31.62 E-value=17 Score=33.08 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=21.8
Q ss_pred HHHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhh
Q 021651 206 TLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKN 240 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~ 240 (309)
--...++++..|+.|..+ |.+.|+.|+|+.++.+.
T Consensus 222 ~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 222 LNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Confidence 345667889999999764 66789999999999753
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=29.90 E-value=15 Score=32.66 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCChhhhH---------HcCCccchhhhchhhHHHHHH
Q 021651 207 LFALVIAVTKDLPDVEGDR---------KFKISTLATKLGVKNIAFLGS 246 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D~---------~~G~~Tlpv~~G~~~~~~l~~ 246 (309)
-...++++.+|+.|..+|. ..|+.|+|+.+|.+++.....
T Consensus 206 ~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~ 254 (291)
T 3npk_A 206 KLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKE 254 (291)
T ss_dssp HHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHH
Confidence 4556788899999987764 368999999999988876544
No 18
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=27.87 E-value=20 Score=32.46 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~ 241 (309)
-...++++..|+.|.. +|.+.|+.|+|+.++.+..
T Consensus 205 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 250 (340)
T 2e8v_A 205 LLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFT 250 (340)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 4455678888888764 5778899999999998754
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=25.49 E-value=26 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHHHHHHccCCChh----------hhHHcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVE----------GDRKFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e----------~D~~~G~~Tlpv~~G~~~~ 241 (309)
-...++++.+|+.|.. +|.+.|+.|+|+.+..+..
T Consensus 205 ~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 205 YIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
Confidence 4455677777777763 7899999999999976543
No 20
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=25.28 E-value=22 Score=31.87 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~ 241 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.++.+.+
T Consensus 202 ~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 202 CIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 45566788888888754 567899999999997654
No 21
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=24.58 E-value=20 Score=32.37 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~ 241 (309)
-...++++.+|+.|.. .|.+.|+.|+|+.++.+..
T Consensus 215 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 260 (334)
T 3pko_A 215 AIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHA 260 (334)
T ss_dssp HHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhC
Confidence 4455677788877764 4788999999999998754
No 22
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=24.23 E-value=22 Score=32.09 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=26.6
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhh
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKN 240 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~ 240 (309)
-...++++.+|+.|.. +|.+.|+.|+|+.++.+.
T Consensus 209 ~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 209 NVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHh
Confidence 4556678888888875 566789999999999753
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=24.03 E-value=20 Score=32.44 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.4
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhh
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKN 240 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~ 240 (309)
-...++++.+|+.|..+ |.+.|+.|+|+.++.+.
T Consensus 211 ~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 255 (341)
T 3mzv_A 211 ALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHh
Confidence 45566788888887754 67899999999999654
No 24
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=24.01 E-value=15 Score=32.75 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHHHccCCChhhh----------HHcCCccchhhhchhhHHH
Q 021651 207 LFALVIAVTKDLPDVEGD----------RKFKISTLATKLGVKNIAF 243 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D----------~~~G~~Tlpv~~G~~~~~~ 243 (309)
-...++++..|+.|..+| .+.|+.|+|+.++.+.+..
T Consensus 195 ~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~~ 241 (299)
T 1v4e_A 195 TIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPE 241 (299)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhChH
Confidence 445667888888887665 5678999999999876544
No 25
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=23.67 E-value=25 Score=32.42 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~~ 241 (309)
-...++++..|+.|..+ |.+.|++|+|+.++.+.+
T Consensus 248 ~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~ 293 (380)
T 3lk5_A 248 DIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293 (380)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 45566788888888754 677899999999998765
No 26
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=22.85 E-value=33 Score=30.41 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHccCCChhhh-----HHcCCccchhhhc
Q 021651 207 LFALVIAVTKDLPDVEGD-----RKFKISTLATKLG 237 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~D-----~~~G~~Tlpv~~G 237 (309)
-...++++.+|+.|..+| .+.|+.|+|+.++
T Consensus 198 ~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 198 ALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CCHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHH
Confidence 455678899999998775 5678999999998
No 27
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=22.09 E-value=25 Score=31.45 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCChhh-----------hHHcCCccchhhhchhh
Q 021651 204 FVTLFALVIAVTKDLPDVEG-----------DRKFKISTLATKLGVKN 240 (309)
Q Consensus 204 ~~~~~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~~G~~~ 240 (309)
+.--...++++.+|+.|..+ |.+.|+.|+|+.++.+.
T Consensus 188 ~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~ 235 (315)
T 3tc1_A 188 FGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHh
No 28
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=21.83 E-value=27 Score=31.02 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchh
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVK 239 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~ 239 (309)
-...++++.+|+.|.. +|.+.|+.|+|+.++.+
T Consensus 180 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~ 223 (301)
T 2q80_A 180 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIW 223 (301)
T ss_dssp HHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHH
Confidence 3455677888887765 56788999999999875
No 29
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=21.36 E-value=22 Score=31.92 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=27.0
Q ss_pred HHHHHHHHHHccCCChh----------hhHHcCCccchhhhchhh
Q 021651 206 TLFALVIAVTKDLPDVE----------GDRKFKISTLATKLGVKN 240 (309)
Q Consensus 206 ~~~~~~~~~~~d~~D~e----------~D~~~G~~Tlpv~~G~~~ 240 (309)
.-...++++.+|+.|.. +|.+.|+.|+|+.++.+.
T Consensus 202 ~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~ 246 (330)
T 1wmw_A 202 LRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHh
Confidence 34556678888887765 578899999999998754
No 30
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=21.30 E-value=30 Score=31.49 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhh
Q 021651 207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKN 240 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~ 240 (309)
-...++++..|+.|.. +|.+.|+.|+|+.++.+.
T Consensus 215 ~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 4556678888888874 567789999999999865
No 31
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=20.16 E-value=22 Score=32.61 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=27.7
Q ss_pred HHHHHHHHHccCCChhh----------hHHcCCccchhhhchhhH
Q 021651 207 LFALVIAVTKDLPDVEG----------DRKFKISTLATKLGVKNI 241 (309)
Q Consensus 207 ~~~~~~~~~~d~~D~e~----------D~~~G~~Tlpv~~G~~~~ 241 (309)
-...++++..|+.|..+ |.+.|+.|+|+.++.+.+
T Consensus 255 ~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a 299 (374)
T 2qis_A 255 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC
Confidence 45567888999988865 567899999999997653
Done!