Query 021653
Match_columns 309
No_of_seqs 226 out of 2369
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 07:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.9 3.2E-20 1.1E-24 176.0 20.9 186 18-230 9-200 (491)
2 2xut_A Proton/peptide symporte 99.8 4.2E-19 1.4E-23 169.8 18.7 192 21-236 11-208 (524)
3 3o7q_A L-fucose-proton symport 99.8 4.2E-18 1.5E-22 158.7 23.8 177 18-224 22-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.8 8.7E-18 3E-22 157.0 15.3 175 21-226 27-206 (451)
5 2gfp_A EMRD, multidrug resista 99.7 1.1E-16 3.7E-21 146.5 12.5 165 27-221 5-169 (375)
6 4gc0_A D-xylose-proton symport 99.7 1.9E-16 6.4E-21 149.9 13.2 172 57-239 54-235 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.6 1.4E-13 4.8E-18 128.3 18.7 177 22-225 252-432 (451)
8 3o7q_A L-fucose-proton symport 99.5 1E-12 3.5E-17 122.1 19.6 167 22-220 258-426 (438)
9 2cfq_A Lactose permease; trans 99.4 1.7E-12 5.8E-17 120.9 14.6 165 32-225 230-398 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.3 2E-11 6.7E-16 115.4 11.9 184 24-228 285-473 (491)
11 2cfq_A Lactose permease; trans 99.3 4.1E-13 1.4E-17 125.1 -0.8 168 23-217 8-178 (417)
12 4gc0_A D-xylose-proton symport 99.3 2.9E-10 1E-14 107.2 18.8 185 22-230 276-466 (491)
13 2gfp_A EMRD, multidrug resista 99.0 3E-10 1E-14 103.4 5.5 164 22-213 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 2E-07 6.9E-12 88.5 2.3 90 133-228 404-504 (524)
15 4aw6_A CAAX prenyl protease 1 35.0 2.3E+02 0.008 26.1 9.9 28 80-108 187-214 (482)
16 4dve_A Biotin transporter BIOY 20.6 2E+02 0.007 23.0 5.9 21 65-85 100-120 (198)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=3.2e-20 Score=176.05 Aligned_cols=186 Identities=21% Similarity=0.385 Sum_probs=164.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh-----cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHh-ccchHHH
Q 021653 18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADA-YAGRFWT 91 (309)
Q Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~-~~GR~~~ 91 (309)
+++++..+.+.+..++.++.+|++..+++.|++++ +|++..+.+.+.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567788888899999999999999999999988 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhh
Q 021653 92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA 171 (309)
Q Consensus 92 i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~ 171 (309)
+.++.++..++.+++.++. +.+.++++|++.|+|.|...+...++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--- 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR--- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT---
T ss_pred HHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc---
Confidence 9999999999988887655 667889999999999999999999999999998732
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcce
Q 021653 172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY 230 (309)
Q Consensus 172 ~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 230 (309)
.|+..+++++.+.++|..++|.+.+++.+..||++.|++.++..+++.++++...+++
T Consensus 143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4888999999999999999999999999999999999998887777666655544433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=4.2e-19 Score=169.83 Aligned_cols=192 Identities=31% Similarity=0.559 Sum_probs=159.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcC------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHH
Q 021653 21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI 94 (309)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i 94 (309)
++..+.+.+..++.++.+|++..+++.|+++++| ++..+.+.+.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4556667788889999999999999999999999 9999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653 95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT 174 (309)
Q Consensus 95 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r 174 (309)
+.++..++.+++.++. .+.+.++++|++.|+|.|...++..++++|.+|+++ ++++
T Consensus 91 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~ 146 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLA 146 (524)
T ss_dssp HHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHH
T ss_pred HHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHH
Confidence 9999998888777643 156778899999999999999999999999999873 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcceeccCCC
Q 021653 175 WKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPA 236 (309)
Q Consensus 175 ~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (309)
...+++++.+.++|..+++.+.+++.+..||++.|++.+++.+++.++++...+++..++|+
T Consensus 147 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (524)
T 2xut_A 147 QKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPE 208 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 55667799999999999999999999889999999998888777666665555544433333
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.81 E-value=4.2e-18 Score=158.68 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=146.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653 18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI 97 (309)
Q Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~ 97 (309)
+..++.+..+....++..+....... +.+++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 44455555555556556655554444 44557789999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHH---HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653 98 IYQIGMICL---TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT 174 (309)
Q Consensus 98 l~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r 174 (309)
+..++.+++ ..+. +.+.++++|++.|+|.|...+...++++|.+|++ +|
T Consensus 100 ~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r 151 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SG 151 (438)
T ss_dssp HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------TH
T ss_pred HHHHHHHHHHhccccc----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hH
Confidence 999999888 4434 7889999999999999999999999999999987 79
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-cccc-------------------------chhhhhHHHHHHHHHHHHHH
Q 021653 175 WKYFNWYYFVMGAAILVAVTVLVYIQ-DNIG-------------------------WGWGLGIPTFAMFLSIIAFL 224 (309)
Q Consensus 175 ~~~~~~~~~~~~iG~~l~~~~~~~i~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~ 224 (309)
+...++++.+.++|..+++.+.+++. +..+ |++.|++.+++.++..++++
T Consensus 152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 5554 89999877766555444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.76 E-value=8.7e-18 Score=157.00 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=146.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653 21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ 100 (309)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~ 100 (309)
|+..+.+.+..++..+..+.+...++ ++.+++ .+..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 44555555555555555554555554 445677 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653 101 IGMICLTI----SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK 176 (309)
Q Consensus 101 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 176 (309)
++.+++.+ +. +.+.++++|++.|+|.|...+...++++|.+|++ +|++
T Consensus 104 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~ 155 (451)
T 1pw4_A 104 AVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGG 155 (451)
T ss_dssp HHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHH
T ss_pred HHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhH
Confidence 99999888 55 6677899999999999999999999999999987 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHHh
Q 021653 177 YFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG 226 (309)
Q Consensus 177 ~~~~~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~ 226 (309)
..++++.+.++|..+++.+++++.+..| |++.|++.+++.++..++.+..
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999888888 9999999888776655444433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.69 E-value=1.1e-16 Score=146.46 Aligned_cols=165 Identities=10% Similarity=0.083 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653 27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL 106 (309)
Q Consensus 27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~ 106 (309)
+....++..+........++. +.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344455555555545555554 4678999999999999999999999999999999996 99999999999999999998
Q ss_pred HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653 107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG 186 (309)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 186 (309)
..+. +.+.++++|++.|++.+...+....++.|.+|++ +|++..++++...+
T Consensus 83 ~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 83 VTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGIL 134 (375)
T ss_dssp HHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHH
T ss_pred HHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHH
Confidence 8877 7888999999999999999999999999999977 69999999999999
Q ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Q 021653 187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII 221 (309)
Q Consensus 187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~ 221 (309)
+|..+++.+.+++.+..+|++.|++.++..++..+
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999888999999888776655544
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.68 E-value=1.9e-16 Score=149.95 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHH
Q 021653 57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI 136 (309)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (309)
....+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++........... .-...-..+..+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~----~~~~~~a~~~~~ 128 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN----TVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS----SCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh----HHHHHHhhhHHH
Confidence 34567888899999999999999999996 9999999999999999998885431000000000 000001127889
Q ss_pred HHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchhh
Q 021653 137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN--------IGWGWG 208 (309)
Q Consensus 137 ~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~--------~gw~~~ 208 (309)
++++|++.|+|.|+..+..+.+++|..|++ +|+...++++.+..+|.++++.+...+... .+|+..
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM 202 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence 999999999999999999999999999987 799999999999999999988776655432 346666
Q ss_pred hhHHHHHHHHHHHH--HHHhCcceeccCCCCCh
Q 021653 209 LGIPTFAMFLSIIA--FLIGYPLYRNLDPAGSP 239 (309)
Q Consensus 209 f~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 239 (309)
+.+..+..++.++. +.+++|++...+.+.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 203 FASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp HHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred hhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 65555544433322 33456666655444333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=1.4e-13 Score=128.32 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=146.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc--chHHHHHHHHHHH
Q 021653 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA--GRFWTITIASIIY 99 (309)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~--GR~~~i~i~~~l~ 99 (309)
+..+.+.+..++..+..+++..+++.|+++.+|++..+++.+.+...++..++.++.|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456667777778888888889999999998899999999999999999999999999999999 6 8999888777665
Q ss_pred H-HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653 100 Q-IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF 178 (309)
Q Consensus 100 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 178 (309)
. ++.+++.... ..+.+.+.+..++.|++.++..+....+..|.+|++ .|++..
T Consensus 331 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~ 384 (451)
T 1pw4_A 331 VTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAA 384 (451)
T ss_dssp HHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHH
T ss_pred HHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHH
Confidence 5 4444333221 114566677778889988888888889999999987 799999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653 179 NWYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI 225 (309)
Q Consensus 179 ~~~~~~~~i-G~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 225 (309)
++++...++ |..+++.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999888877776655443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=1e-12 Score=122.08 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHH-hHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653 22 ITMPFIFSNEVCEKLAVVGFNTNMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ 100 (309)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~ 100 (309)
+..+..++..++.....+.+..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+.+.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 455666666667777777888899999 8888899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653 101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (309)
Q Consensus 101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 180 (309)
++.++..... +... .+..++.|++.+...+....+..|.+|++ ++...++
T Consensus 337 ~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 386 (438)
T 3o7q_A 337 ALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_dssp HHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred HHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence 8777666543 3333 33447788999999999999989998853 4444554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHH
Q 021653 181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSI 220 (309)
Q Consensus 181 ~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~ 220 (309)
.. ...+|+.++|.+.+++.+..| ++..|.+.+++.++..
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44 567999999999999999888 9999988766554443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.42 E-value=1.7e-12 Score=120.87 Aligned_cols=165 Identities=8% Similarity=0.052 Sum_probs=119.7
Q ss_pred HHHHHHHHhhHHHHHHHhHHhcCCC---HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653 32 VCEKLAVVGFNTNMISYLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI 108 (309)
Q Consensus 32 ~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~ 108 (309)
++....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++..++.+++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445566888887666532 23445556666667778889999999996 9999998888777666554433
Q ss_pred HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH-HHHHHHH
Q 021653 109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGA 187 (309)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~~i 187 (309)
.. +...+.+...+.+++.+...+....+.+|.+|++ .|++..++ ++....+
T Consensus 309 ~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 309 AT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQL 360 (417)
T ss_dssp CC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHH
T ss_pred hc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhH
Confidence 22 4455556666677777766677788999999976 78888888 4777889
Q ss_pred HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653 188 AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI 225 (309)
Q Consensus 188 G~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~ 225 (309)
|+.++|.+.+++.+..|+...|.+.+++.+++.++.+.
T Consensus 361 g~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888888888877777666655433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.27 E-value=2e-11 Score=115.39 Aligned_cols=184 Identities=9% Similarity=-0.029 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHH-----HHHHH
Q 021653 24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-----IASII 98 (309)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~-----i~~~l 98 (309)
.+.+....++....+......++.|+++.++.+....+.+.+...++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44444445555566666777888999888888866677777778888888899999999996 9986544 66666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653 99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF 178 (309)
Q Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 178 (309)
..++.+++........ .+.+.+...+.+..++.|+|.+...+....+..|.+|++ .|+...
T Consensus 364 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~ 424 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQMM 424 (491)
T ss_dssp HHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSST
T ss_pred HHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHHH
Confidence 6666665554331100 001124556667778889999999999999999999988 689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653 179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP 228 (309)
Q Consensus 179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 228 (309)
+.++...++|..+++.+.+++.+. ++...|.+.+++.+++.++.+...+
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888764 5666777777766666655554443
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=4.1e-13 Score=125.05 Aligned_cols=168 Identities=5% Similarity=-0.081 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653 23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG 102 (309)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g 102 (309)
..+.+....++..+.+..+..+++.|+++++|++..+.+.+.+.+.++..++++++|+++||+ |||++++++..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 344444555555555566677899999989999999999999999999999999999999996 9999999888776543
Q ss_pred HHHH---HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653 103 MICL---TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 179 (309)
Q Consensus 103 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 179 (309)
.... ..... ....+..++.+.+++.|...+...+...+..++. .++++..++
T Consensus 87 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g 141 (417)
T 2cfq_A 87 FAPFFIFIFGPL---------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFG 141 (417)
T ss_dssp HHHHHHHTHHHH---------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHH
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchH
Confidence 2211 11110 0001223344444444433333333333332211 114555566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 021653 180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF 217 (309)
Q Consensus 180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~ 217 (309)
..+...++|..++|.+.+++.+ .+|+..|++.++..+
T Consensus 142 ~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 142 RARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp HHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 6666778899999999888876 589998887665543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.25 E-value=2.9e-10 Score=107.20 Aligned_cols=185 Identities=14% Similarity=0.049 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI 101 (309)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~ 101 (309)
+..........+..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444444333344444556667888888777777777888889999999999996 999999999888888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653 102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY 181 (309)
Q Consensus 102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 181 (309)
+.+.+....... .........+..+..+++.+ ..+....+.+|.+|++ .|++..++.
T Consensus 355 ~~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~------~R~~~~g~~ 411 (491)
T 4gc0_A 355 GMFSLGTAFYTQ----------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNA------IRGKALAIA 411 (491)
T ss_dssp HHHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTT------THHHHHHHH
T ss_pred HHHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHh------HHHHHHHHH
Confidence 777666543111 01111122222222233322 3356678899999998 699999998
Q ss_pred HHHHHHHHHHHHHHHHHhhc------cccchhhhhHHHHHHHHHHHHHHHhCcce
Q 021653 182 YFVMGAAILVAVTVLVYIQD------NIGWGWGLGIPTFAMFLSIIAFLIGYPLY 230 (309)
Q Consensus 182 ~~~~~iG~~l~~~~~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 230 (309)
+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 88888999888877666543 34556677777777777776666655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.99 E-value=3e-10 Score=103.40 Aligned_cols=164 Identities=9% Similarity=-0.030 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH-HH
Q 021653 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQ 100 (309)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l-~~ 100 (309)
|..+...+..++..+..+.+..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3455556666677777777888888899888999999999999999999999999999999996 872 2333332 22
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653 101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (309)
Q Consensus 101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 180 (309)
.+..+...... ...+.+.+++..++.|++.+...+....+..|.+| + +|++..+.
T Consensus 276 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWF------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHH------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHH
T ss_pred HHHHHHHHhhh------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHH
Confidence 22221111110 01145566677788899999999999999999987 4 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 021653 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPT 213 (309)
Q Consensus 181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~ 213 (309)
++...++|..+++.+.+.+.+..+|...+.+..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999998887777777666543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.28 E-value=2e-07 Score=88.50 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc-----
Q 021653 133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI--GW----- 205 (309)
Q Consensus 133 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~--gw----- 205 (309)
+.+.+.++.++.|+|.+...+....+..|.+|++ .|++..++++...++|+.+++.+.+.+.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4455667778899999999999999999999987 6999999999999999999999999887632 23
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHhCc
Q 021653 206 ----GWGLGIPTFAMFLSIIAFLIGYP 228 (309)
Q Consensus 206 ----~~~f~i~~~~~~~~~~~~~~~~~ 228 (309)
+..|++.+++.+++.++++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555544443333
No 15
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=35.01 E-value=2.3e+02 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653 80 FVADAYAGRFWTITIASIIYQIGMICLTI 108 (309)
Q Consensus 80 ~laD~~~GR~~~i~i~~~l~~~g~~~~~~ 108 (309)
++.++. |+++.+....+...+..++..+
T Consensus 187 ~ii~~~-g~~~wl~~w~~~~~~~l~~~~i 214 (482)
T 4aw6_A 187 YIIKIG-GDYFFIYAWLFTLVVSLVLVTI 214 (482)
T ss_dssp HHHHHS-CSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-CchhHHHHHHHHHHHHHHHHHH
Confidence 355774 9988777666655555554444
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.56 E-value=2e+02 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhc
Q 021653 65 TNFGGTGSLTPLIGAFVADAY 85 (309)
Q Consensus 65 ~~~~~~~~~~~l~~G~laD~~ 85 (309)
.-|.++..+++.+.|+++||.
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~ 120 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKL 120 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 346777778888999999995
Done!