BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021654
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HE8|A Chain A, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B
pdb|3HE8|B Chain B, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B
pdb|3HEE|A Chain A, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B And Ribose-5-Phosphate
pdb|3HEE|B Chain B, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B And Ribose-5-Phosphate
Length = 149
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVXXXXXXXXXXR 71
+KI G+D G LK + L+ +V D GT S+ + G +V R
Sbjct: 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 60
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G+V CGTG+G++I ANK PG+ A C A +R N+ N+LA+ + A++I+
Sbjct: 61 GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 120
Query: 132 DTWLKTPFKAPCPAS 146
DTWLK F+ A+
Sbjct: 121 DTWLKAEFQGGRHAT 135
>pdb|3PH4|A Chain A, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Allose
pdb|3PH4|B Chain B, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Allose
pdb|3PH3|A Chain A, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Ribose
pdb|3PH3|B Chain B, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Ribose
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVXXXXXXXXXXR 71
+KI G+D G LK + L+ +V D GT S+ + G +V R
Sbjct: 21 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 80
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G+V CGTG+G++I ANK PG+ A C A +R N+ N+LA+ + A++I+
Sbjct: 81 GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 140
Query: 132 DTWLKTPFKAPCPAS 146
DTWLK F+ A+
Sbjct: 141 DTWLKAEFQGGRHAT 155
>pdb|1NN4|A Chain A, Structural Genomics, RpibALSB
pdb|1NN4|B Chain B, Structural Genomics, RpibALSB
pdb|1NN4|C Chain C, Structural Genomics, RpibALSB
pdb|1NN4|D Chain D, Structural Genomics, RpibALSB
Length = 162
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVXXXXXXXX 68
KI G D G LK +V+HL ++V D GT +DY ++V V
Sbjct: 16 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG- 74
Query: 69 XXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
G++ CGTGVG++I ANK G+ A C P A +R N+ NVLA E A
Sbjct: 75 ---GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 131
Query: 129 EILDTWLKTPFKA 141
I+D WL ++
Sbjct: 132 MIVDAWLGAQYEG 144
>pdb|2VVR|A Chain A, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|B Chain B, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|C Chain C, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|D Chain D, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|E Chain E, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|F Chain F, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
Length = 149
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVXXXXXXXX 68
KI G D G LK +V+HL ++V D GT +DY ++V V
Sbjct: 3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG- 61
Query: 69 XXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
G++ CGTGVG++I ANK G+ A C P A +R N+ NVLA E A
Sbjct: 62 ---GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAK 118
Query: 129 EILDTWLKTPFK 140
I+D WL ++
Sbjct: 119 MIVDAWLGAQYE 130
>pdb|3S5P|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
From Giardia Lamblia
pdb|3S5P|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
From Giardia Lamblia
Length = 166
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 10 PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGRRVX 61
P +K+ +D G +L+ L + +V DLGT D+ IG E
Sbjct: 19 PGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEA----- 73
Query: 62 XXXXXXXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMS 121
++ CGTG+G++I ANK G+ C T DA R NN N LA+ G +
Sbjct: 74 --VTSGRADCCILVCGTGIGISIAANKMKGIRCALCSTEYDAEMARKHNNANALALGGRT 131
Query: 122 TSKESAVEILDTWLKTPFK 140
T E A IL +L T F+
Sbjct: 132 TGPEVAASILSRFLSTNFE 150
>pdb|1O1X|A Chain A, Crystal Structure Of A Ribose 5-phosphate Isomerase Rpib
(tm1080) From Thermotoga Maritima At 1.90 A Resolution
Length = 155
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVXXXXXXXXXXR 71
+KI +D ELK+ + ++L I+VED GT S+ + ++V
Sbjct: 13 VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADF 72
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G++ GTG+G +I AN+ G+ A CL P A RS NN N+L + G E A I+
Sbjct: 73 GILLXGTGLGXSIAANRYRGIRAALCLFPDXARLARSHNNANILVLPGRLIGAELAFWIV 132
Query: 132 DTWLKTPF 139
DT+L TPF
Sbjct: 133 DTFLSTPF 140
>pdb|3K7O|A Chain A, Structure Of Type B Ribose 5-phosphate Isomerase From
Trypanosoma Cruzi
pdb|3K7O|B Chain B, Structure Of Type B Ribose 5-phosphate Isomerase From
Trypanosoma Cruzi
pdb|3K7S|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K7S|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K7S|C Chain C, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K7S|D Chain D, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K8C|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With 4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
pdb|3K8C|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With 4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
Length = 179
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G++ACG+G+G++I ANK PGV A C A +R N+ N++ V +T E EI+
Sbjct: 85 GVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREII 144
Query: 132 DTWLKTPF 139
T+L+TPF
Sbjct: 145 ITFLQTPF 152
>pdb|3K7P|A Chain A, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type B
From Trypanosoma Cruzi.
pdb|3K7P|B Chain B, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type B
From Trypanosoma Cruzi
Length = 179
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G++A G+G+G++I ANK PGV A C A +R N+ N++ V +T E EI+
Sbjct: 85 GVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREII 144
Query: 132 DTWLKTPF 139
T+L+TPF
Sbjct: 145 ITFLQTPF 152
>pdb|3M1P|A Chain A, Structure Of Ribose 5-Phosphate Isomerase Type B From
Trypanosoma Cruzi, Soaked With Allose-6-Phosphate
pdb|3M1P|B Chain B, Structure Of Ribose 5-Phosphate Isomerase Type B From
Trypanosoma Cruzi, Soaked With Allose-6-Phosphate
Length = 153
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G++A G+G+G++I ANK PGV A C A +R N+ N++ V +T E EI+
Sbjct: 65 GVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREII 124
Query: 132 DTWLKTPF 139
T+L+TPF
Sbjct: 125 ITFLQTPF 132
>pdb|4EM8|A Chain A, The Structure Of Ribose 5-Phosphate Isomerase B From
Anaplasma Phagocytophilum
pdb|4EM8|B Chain B, The Structure Of Ribose 5-Phosphate Isomerase B From
Anaplasma Phagocytophilum
Length = 148
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVXXXXXXX 67
++ +D G EL+ L ++LR L +V D G + DY +V R V
Sbjct: 9 RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSF-- 66
Query: 68 XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
G++ CGTG+G++I AN++ + A C + A +R N+ NVL ++A
Sbjct: 67 ----GVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 122
Query: 128 VEILDTWLKTPF 139
+L T++ T F
Sbjct: 123 QSVLYTFMTTAF 134
>pdb|1USL|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|B Chain B, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|C Chain C, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|D Chain D, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|E Chain E, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate
Length = 170
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVXXXXXX 66
+++ GAD G ELK ++ HL+ + D G DY + R
Sbjct: 12 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 71
Query: 67 XXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
G+V G+G G I ANK PG + A R NN ++ + G +
Sbjct: 72 L----GIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAE 127
Query: 127 AVEILDTWLKTPF 139
A+ I+D ++ TP+
Sbjct: 128 ALAIVDAFVTTPW 140
>pdb|2VVO|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVP|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVQ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
Length = 162
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVXXXXXX 66
+++ GAD G ELK ++ HL+ + D G DY + R
Sbjct: 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 63
Query: 67 XXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
G+V G+G G I ANK PG + A R NN ++ + G +
Sbjct: 64 L----GIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAE 119
Query: 127 AVEILDTWLKTPF 139
A+ I+D ++ TP+
Sbjct: 120 ALAIVDAFVTTPW 132
>pdb|2BES|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|B Chain B, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|C Chain C, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|D Chain D, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|E Chain E, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BET|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|B Chain B, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|C Chain C, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|D Chain D, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|E Chain E, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate
Length = 172
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVXXXXXX 66
+++ GAD G ELK ++ HL+ + D G DY + R
Sbjct: 14 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 73
Query: 67 XXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
G+V G+G G I ANK PG + A R NN ++ + G +
Sbjct: 74 L----GIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAE 129
Query: 127 AVEILDTWLKTPF 139
A+ I+D ++ TP+
Sbjct: 130 ALAIVDAFVTTPW 142
>pdb|3SDW|A Chain A, Crystal Structure Of A Ribose-5-Phosphate Isomerase B Rpib
From Coccidioides Immitis Bound To Phosphate
pdb|3SGW|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
From Coccidioides Immitis Semi-Covalently Bound To
Malonic Acid
Length = 184
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 12 PLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTSDYYSIGA--EVGRRVXXXXXXX 67
PL++ D G K+AL +HL L + D+G + A V +
Sbjct: 29 PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 88
Query: 68 XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
R L+ CGTG+GVAI ANK PG+ A T N+ VL E A
Sbjct: 89 KVDRALMICGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELA 148
Query: 128 VEILDTWLKTPF 139
+ WL F
Sbjct: 149 KRLAGEWLTYRF 160
>pdb|3QD5|A Chain A, Crystal Structure Of A Putative Ribose-5-Phosphate
Isomerase From Coccidioides Immitis Solved By Combined
Iodide Ion Sad And Mr
pdb|3QD5|B Chain B, Crystal Structure Of A Putative Ribose-5-Phosphate
Isomerase From Coccidioides Immitis Solved By Combined
Iodide Ion Sad And Mr
Length = 167
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 12 PLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTSDYYSIGA--EVGRRVXXXXXXX 67
PL++ D G K+AL +HL L + D+G + A V +
Sbjct: 12 PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 71
Query: 68 XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
R L+ GTG+GVAI ANK PG+ A T N+ VL E A
Sbjct: 72 KVDRALMIXGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELA 131
Query: 128 VEILDTWLKTPF 139
+ WL F
Sbjct: 132 KRLAGEWLTYRF 143
>pdb|3ONO|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase
Lacab_rpib From Vibrio Parahaemolyticus
Length = 214
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 LVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
+ CGTG G N +PGV CL P+DA INN N ++++
Sbjct: 71 VTGCGTGQGALXSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLA 116
>pdb|2PPW|A Chain A, The Crystal Structure Of Uncharacterized Ribose
5-Phosphate Isomerase Rpib From Streptococcus Pneumoniae
pdb|2PPW|B Chain B, The Crystal Structure Of Uncharacterized Ribose
5-Phosphate Isomerase Rpib From Streptococcus Pneumoniae
Length = 216
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 73 LVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAV 117
+ CGTGVG + N PGV + P DA IN N L++
Sbjct: 72 VTGCGTGVGAXLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSI 116
>pdb|3O14|A Chain A, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
pdb|3O14|B Chain B, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
Length = 223
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
++IVR+ GS AH H G + +VL G + + E D G Y+ P H
Sbjct: 45 TSIVRYAPGSRFSAHTHDGGEEFIVLDG------VFQDEHGDYPAGTYVRNPPTTSHVPG 98
Query: 275 YYEETEFFIK 284
E F+K
Sbjct: 99 SAEGCTIFVK 108
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 197 PVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERF- 255
PV++I G I E+ + ++ F +EP+ + QG L E+F
Sbjct: 124 PVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDK--IYQGLNPGGALVLSEKFS 181
Query: 256 --DLTVGDYLFTPAGDVHRVKYYEETE 280
D VG+ LF D R Y E E
Sbjct: 182 FEDAKVGELLFNMHHDFKRANGYSELE 208
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
Length = 145
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 227 PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVH 271
P H H + H++ VL+G + +G ++ G+ +F P G+ H
Sbjct: 53 PPHFHEWEHEIYVLEGSXGLVLPDQGRTEEVGPGEAIFIPRGEPH 97
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 227 PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVH 271
P H H + H++ VL+G + +G ++ G+ +F P G+ H
Sbjct: 53 PPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPH 97
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 229 HHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
H+H + + L+G+ ++W T G+ L GD+L PA VH +
Sbjct: 234 HYHEYHTETFYCLEGQMTMW--TDGQEIQLNPGDFLHVPANTVHSYR 278
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 223 GSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
G P H H H+ ++VL GK + GER+ L GDY PAG H +
Sbjct: 56 GDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISGDYANIPAGTPHSYR 106
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 212 SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD 269
SPT +AI P H H+ V++G+ VW + G+ ++ GD L TP
Sbjct: 100 SPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWC 158
Query: 270 VHRVKYYEETEFFIKWDGRWDMFFDEDL 297
H + +T+ + W D+ F + +
Sbjct: 159 FH--GHMNDTDQPMAWIDGLDIPFSQQM 184
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 229 HHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
H+H + + L+G+ + W T G+ L GD+L PA VH +
Sbjct: 235 HYHEYHTETFYCLEGQXTXW--TDGQEIQLNPGDFLHVPANTVHSYR 279
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 223 GSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
G P H H H+ ++VL GK + GER+ L GDY PAG H +
Sbjct: 57 GDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISGDYANIPAGTPHSYR 107
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 70 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 129
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 130 PSGLPHSIQALEEGAEFLLVFD 151
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 212 SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD 269
SPT + I P H H+ V++G+ VW + G+ ++ GD L TP
Sbjct: 100 SPTMYAGIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWC 158
Query: 270 VHRVKYYEETEFFIKWDGRWDMFFDEDL 297
H + +T+ + W D+ F + +
Sbjct: 159 FH--GHMNDTDQPMAWIDGLDIPFSQQM 184
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From
Francisella Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From
Francisella Tularensis
Length = 443
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 11 HPLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGT 46
+P +I G D S G LK ALVS L + IDV DLG
Sbjct: 40 YPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGV 77
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 212 SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD 269
SPT + I P H H+ V++G+ VW + G+ ++ GD L TP
Sbjct: 100 SPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWC 158
Query: 270 VHRVKYYEETEFFIKWDGRWDMFFDEDL 297
H + +T+ + W D+ F + +
Sbjct: 159 FH--GHMNDTDQPMAWIDGLDIPFSQQM 184
>pdb|4FAH|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans A85h Mutant
Length = 367
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 212 SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD 269
SPT + I P H H+ V++G+ VW + G+ ++ GD L TP
Sbjct: 100 SPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWC 158
Query: 270 VHRVKYYEETEFFIKWDGRWDMFFDEDL 297
H + +T+ + W D+ F + +
Sbjct: 159 FH--GHMNDTDQPMAWIDGLDIPFSQQM 184
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIAELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2D40|A Chain A, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|B Chain B, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|C Chain C, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|D Chain D, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
Length = 354
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 223 GSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVH 271
G V P+H H +++GK + GER GD++ TP H
Sbjct: 110 GEVAPSHRHNQSALRFIVEGK-GAFTAVDGERTPXNEGDFILTPQWRWH 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,829,456
Number of Sequences: 62578
Number of extensions: 351829
Number of successful extensions: 1020
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 43
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)